Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog yybP-ykoY - Ralstonia

Properties
Regulator type: RNA regulatory element
Name: yybP-ykoY
RFAM: RF00080
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Ralstonia solanacearum GMI1000 1 1
Ralstonia pickettii 12J 3 3
Ralstonia metallidurans CH34 1 1
Ralstonia eutropha JMP134 1 1
Ralstonia eutropha H16 1 1
Cupriavidus taiwanensis 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ykoY
*
Ralstonia solanacearum GMI1000

Site:
position = -215
score = 74.47
sequence = CGACTTCCTCAAAGG...

Gene: RS04438: Membrane protein TerC, possibly involved in tellurium resistance
*
Ralstonia pickettii 12J

Site:
position = -221
score = 76.33
sequence = GGACTTCCTCAAAGG...

Gene: Rpic_0820: Membrane protein TerC, possibly involved in tellurium resistance
*
Ralstonia metallidurans CH34

Site:
position = -258
score = 62.08
sequence = GGGAAGTTAAAGGGG...

Gene: Rmet_2567: Membrane protein TerC, possibly involved in tellurium resistance
*
Ralstonia eutropha JMP134

Site:
position = -231
score = 68.83
sequence = GCGTCCCTTCAAAGG...

Gene: Reut_A0916: Membrane protein TerC, possibly involved in tellurium resistance
*
Ralstonia eutropha H16

Site:
position = -233
score = 73.3
sequence = TGTCCCTCAAAGGGG...

Gene: H16_A2702: Membrane protein TerC, possibly involved in tellurium resistance
*
Cupriavidus taiwanensis

Site:
position = -230
score = 72.48
sequence = TGTCCCTCAAAGGGG...

Gene: RALTA_A2193: Membrane protein TerC, possibly involved in tellurium resistance
Membrane protein TerC, possibly involved in tellurium resistance
 
CRON 2.
COG0530
 
Ralstonia solanacearum GMI1000
*2
Ralstonia pickettii 12J

Site:
position = -210
score = 50.15
sequence = GCCCGTTGTCATTGG...

Gene: Rpic_1664: Sodium/calcium exchanger family membrane protein, COG0530

Site:
position = -208
score = 50.15
sequence = CCGTTGTCATTGGGG...

Gene: Rpic_2952: Sodium/calcium exchanger family membrane protein, COG0530
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134
 
Ralstonia eutropha H16
 
Cupriavidus taiwanensis
Sodium/calcium exchanger family membrane protein, COG0530
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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