Regulog yybP-ykoY - Bacillales
| Regulator type: | RNA regulatory element |
| Name: | yybP-ykoY |
| RFAM: | RF00080 |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Bacillales
- By RNA motif - yybP-ykoY
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 2 | 2 |
| Bacillus amyloliquefaciens FZB42 | 1 | 1 |
| Bacillus pumilus SAFR-032 | 2 | 2 |
| Bacillus licheniformis DSM 13 | 2 | 2 |
| Anoxybacillus flavithermus WK1 | 1 | 1 |
| Geobacillus kaustophilus HTA426 | 2 | 1 |
| Bacillus cereus ATCC 14579 | 3 | 2 |
| Bacillus halodurans C-125 | 1 | 1 |
| Bacillus clausii KSM-K16 | 2 | 2 |
| Oceanobacillus iheyensis HTE831 | 2 | 2 |
| Paenibacillus sp. JDR-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| yrzF |
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Gene: BPUM_2418: Predicted Ser/Thr protein kinase |
Gene: BLi02903: Predicted Ser/Thr protein kinase |
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*
Bacillus clausii KSM-K16 Site: position = -135 score = 70.78 sequence = GGAAATTCCCAAAGG... Gene: ABC3139: Predicted Ser/Thr protein kinase |
*
Oceanobacillus iheyensis HTE831 Site: position = -292 score = 77.38 sequence = AATTAATCCCAAAGG... Gene: OB1285: Predicted Ser/Thr protein kinase |
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Predicted Ser/Thr protein kinase |
| CRON 2. | ||||||||||||
| yybP |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -316 score = 75.79 sequence = TGAACACTCCAAAGG... Gene: BSU40560: Putative secreted protein |
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*
Bacillus pumilus SAFR-032 Site: position = -216 score = 52.72 sequence = ACGGTTTCCTAAAGG... Gene: BPUM_3024: Putative secreted protein |
*
Bacillus licheniformis DSM 13 Site: position = -314 score = 75.94 sequence = AATACTCCAAAGGGG... Gene: BLi00708: Putative secreted protein |
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Gene: BC1947: Putative secreted protein |
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Gene: Pjdr2_3145: Putative secreted protein |
Putative secreted protein |
| CRON 3. | ||||||||||||
| COG3339 |
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*
Geobacillus kaustophilus HTA426 Site: position = -247 score = 69.69 sequence = CTTTTGTTAAAGGGG... Gene: GK0609: Hypothetical protein, COG3339 |
*
Bacillus cereus ATCC 14579 Site: position = -190 score = 73.32 sequence = GTGTATATAAAGGGG... Gene: BC0827: Hypothetical protein, COG3339 |
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Hypothetical protein, COG3339 |
| ykoY |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -28 score = 81.01 sequence = GAAATCCCAAAGGGG... Gene: BSU13440: Membrane protein TerC, possibly involved in tellurium resistance |
*
Bacillus amyloliquefaciens FZB42 Site: position = -167 score = 82.73 sequence = GAAATCCCAAAGGGG... Gene: RBAM_013210: Membrane protein TerC, possibly involved in tellurium resistance |
*
Bacillus pumilus SAFR-032 Site: position = -203 score = 81.12 sequence = ATCCCACCAAAGGGG... Gene: BPUM_1236: Membrane protein TerC, possibly involved in tellurium resistance |
*
Bacillus licheniformis DSM 13 Site: position = -222 score = 76.24 sequence = TTTATCCCAAAGGGG... Gene: BLi01498: Membrane protein TerC, possibly involved in tellurium resistance |
*
Anoxybacillus flavithermus WK1 Site: position = -32 score = 72.43 sequence = TTTCCTTCACAAAGG... Gene: Aflv_2033: Membrane protein TerC, possibly involved in tellurium resistance |
Gene: GK0610: Membrane protein TerC, possibly involved in tellurium resistance |
*
Bacillus cereus ATCC 14579 Site: position = -252 score = 76.68 sequence = ACATATCTCCAAAGG... Gene: BC1309: Membrane protein TerC, possibly involved in tellurium resistance |
*
Bacillus halodurans C-125 Site: position = -225 score = 74.26 sequence = ACATAGCTTTTAAGG... Gene: BH2553: Membrane protein TerC, possibly involved in tellurium resistance |
*2
Bacillus clausii KSM-K16 Gene: ABC1841: Membrane protein TerC, possibly involved in tellurium resistance Site: position = -226 score = 66.23 sequence = ACATTCCTTCAAAGG... Gene: ABC0758: Membrane protein TerC, possibly involved in tellurium resistance |
*
Oceanobacillus iheyensis HTE831 Site: position = -305 score = 68.52 sequence = ATAGCAAATTAAAGG... Gene: OB3036: Membrane protein TerC, possibly involved in tellurium resistance |
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Membrane protein TerC, possibly involved in tellurium resistance |
| ykoX |
Gene: BSU13430: DedA family protein |
Gene: RBAM_013200: DedA family protein |
Gene: BPUM_1235: DedA family protein |
Gene: BLi01497: DedA family protein |
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Gene: BC0828: DedA family protein |
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DedA family protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |