Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog ylbH - Bacillales

Properties
Regulator type: RNA regulatory element
Name: ylbH
RFAM: RF00516
Regulation mode:
Biological process:
Effector:
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 2 1
Bacillus amyloliquefaciens FZB42 2 1
Bacillus pumilus SAFR-032 2 1
Bacillus licheniformis DSM 13 2 1
Anoxybacillus flavithermus WK1 2 1
Geobacillus kaustophilus HTA426 2 1
Bacillus cereus ATCC 14579 2 1
Bacillus halodurans C-125 2 1
Bacillus clausii KSM-K16
Oceanobacillus iheyensis HTE831 2 1
Paenibacillus sp. JDR-2 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ylbH
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -319
score = 128.84
sequence = TAAAAAAATCCCCGC...

Gene: BSU15010: Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -302
score = 123.23
sequence = TAAAAAAATCCCCGC...

Gene: RBAM_014870: Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-)
*
Bacillus pumilus SAFR-032

Site:
position = -305
score = 108.01
sequence = CAAAAAAACCCCCGC...

Gene: BPUM_1394: Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-)
*
Bacillus licheniformis DSM 13

Site:
position = -280
score = 121.15
sequence = TAAAAAAATCCCCGC...

Gene: BLi01718: Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-)
*
Anoxybacillus flavithermus WK1

Site:
position = -263
score = 88.88
sequence = AATAAAAAAATGCCC...

Gene: Aflv_1851: Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-)
*
Geobacillus kaustophilus HTA426

Site:
position = -330
score = 83.79
sequence = CAAAAAAAACCTTGC...

Gene: GK1098: Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-)
*
Bacillus cereus ATCC 14579

Site:
position = -440
score = 115.62
sequence = AAGAAAAAAAACCCT...

Gene: BC3930: Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-)
*
Bacillus halodurans C-125

Site:
position = -313
score = 84.89
sequence = AATAAAAAAATCCCC...

Gene: BH2590: Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-)
 
Bacillus clausii KSM-K16

Gene: ABC2378: Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-)
*
Oceanobacillus iheyensis HTE831

Site:
position = -271
score = 81.68
sequence = AATAAAAAACCTGCA...

Gene: OB1450: Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-)
*
Paenibacillus sp. JDR-2

Site:
position = -270
score = 70.01
sequence = TACAAAAAAATCGGA...

Gene: Pjdr2_3502: Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-)
Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-)
coaD
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU15020: Phosphopantetheine adenylyltransferase (EC 2.7.7.3)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_014880: Phosphopantetheine adenylyltransferase (EC 2.7.7.3)
 
Bacillus pumilus SAFR-032

Gene: BPUM_1395: Phosphopantetheine adenylyltransferase (EC 2.7.7.3)
 
Bacillus licheniformis DSM 13

Gene: BLi01719: Phosphopantetheine adenylyltransferase (EC 2.7.7.3)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1850: Phosphopantetheine adenylyltransferase (EC 2.7.7.3)
 
Geobacillus kaustophilus HTA426

Gene: GK1099: Phosphopantetheine adenylyltransferase (EC 2.7.7.3)
 
Bacillus cereus ATCC 14579

Gene: BC3929: Phosphopantetheine adenylyltransferase (EC 2.7.7.3)
 
Bacillus halodurans C-125

Gene: BH2589: Phosphopantetheine adenylyltransferase (EC 2.7.7.3)
 
Bacillus clausii KSM-K16

Gene: ABC2377: Phosphopantetheine adenylyltransferase (EC 2.7.7.3)
 
Oceanobacillus iheyensis HTE831

Gene: OB1451: Phosphopantetheine adenylyltransferase (EC 2.7.7.3)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_3501: Phosphopantetheine adenylyltransferase (EC 2.7.7.3)
Phosphopantetheine adenylyltransferase (EC 2.7.7.3)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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