Regulog ylbH - Bacillales
| Regulator type: | RNA regulatory element |
| Name: | ylbH |
| RFAM: | RF00516 |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Bacillales
- By RNA motif - ylbH
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 2 | 1 |
| Bacillus amyloliquefaciens FZB42 | 2 | 1 |
| Bacillus pumilus SAFR-032 | 2 | 1 |
| Bacillus licheniformis DSM 13 | 2 | 1 |
| Anoxybacillus flavithermus WK1 | 2 | 1 |
| Geobacillus kaustophilus HTA426 | 2 | 1 |
| Bacillus cereus ATCC 14579 | 2 | 1 |
| Bacillus halodurans C-125 | 2 | 1 |
| Bacillus clausii KSM-K16 | ||
| Oceanobacillus iheyensis HTE831 | 2 | 1 |
| Paenibacillus sp. JDR-2 | 2 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| ylbH |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -319 score = 128.84 sequence = TAAAAAAATCCCCGC... Gene: BSU15010: Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) |
*
Bacillus amyloliquefaciens FZB42 Site: position = -302 score = 123.23 sequence = TAAAAAAATCCCCGC... Gene: RBAM_014870: Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) |
*
Bacillus pumilus SAFR-032 Site: position = -305 score = 108.01 sequence = CAAAAAAACCCCCGC... Gene: BPUM_1394: Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) |
*
Bacillus licheniformis DSM 13 Site: position = -280 score = 121.15 sequence = TAAAAAAATCCCCGC... Gene: BLi01718: Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) |
*
Anoxybacillus flavithermus WK1 Site: position = -263 score = 88.88 sequence = AATAAAAAAATGCCC... Gene: Aflv_1851: Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) |
*
Geobacillus kaustophilus HTA426 Site: position = -330 score = 83.79 sequence = CAAAAAAAACCTTGC... Gene: GK1098: Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) |
*
Bacillus cereus ATCC 14579 Site: position = -440 score = 115.62 sequence = AAGAAAAAAAACCCT... Gene: BC3930: Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) |
*
Bacillus halodurans C-125 Site: position = -313 score = 84.89 sequence = AATAAAAAAATCCCC... Gene: BH2590: Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) |
Gene: ABC2378: Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) |
*
Oceanobacillus iheyensis HTE831 Site: position = -271 score = 81.68 sequence = AATAAAAAACCTGCA... Gene: OB1450: Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) |
*
Paenibacillus sp. JDR-2 Site: position = -270 score = 70.01 sequence = TACAAAAAAATCGGA... Gene: Pjdr2_3502: Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) |
Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) |
| coaD |
Gene: BSU15020: Phosphopantetheine adenylyltransferase (EC 2.7.7.3) |
Gene: RBAM_014880: Phosphopantetheine adenylyltransferase (EC 2.7.7.3) |
Gene: BPUM_1395: Phosphopantetheine adenylyltransferase (EC 2.7.7.3) |
Gene: BLi01719: Phosphopantetheine adenylyltransferase (EC 2.7.7.3) |
Gene: Aflv_1850: Phosphopantetheine adenylyltransferase (EC 2.7.7.3) |
Gene: GK1099: Phosphopantetheine adenylyltransferase (EC 2.7.7.3) |
Gene: BC3929: Phosphopantetheine adenylyltransferase (EC 2.7.7.3) |
Gene: BH2589: Phosphopantetheine adenylyltransferase (EC 2.7.7.3) |
Gene: ABC2377: Phosphopantetheine adenylyltransferase (EC 2.7.7.3) |
Gene: OB1451: Phosphopantetheine adenylyltransferase (EC 2.7.7.3) |
Gene: Pjdr2_3501: Phosphopantetheine adenylyltransferase (EC 2.7.7.3) |
Phosphopantetheine adenylyltransferase (EC 2.7.7.3) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |