Regulog ykoK - Bacillales
| Regulator type: | RNA regulatory element |
| Name: | ykoK |
| RFAM: | RF00380 |
| Regulation mode: | |
| Biological process: | Magnesium homeostasis |
| Effector: | Magnesium ion, (Mg2+) |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Bacillales
- By RNA motif - ykoK
- By effector - Magnesium ion, (Mg2+)
- By pathway - Magnesium homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 1 | 1 |
| Bacillus amyloliquefaciens FZB42 | 1 | 1 |
| Bacillus pumilus SAFR-032 | 1 | 1 |
| Bacillus licheniformis DSM 13 | 1 | 1 |
| Anoxybacillus flavithermus WK1 | ||
| Geobacillus kaustophilus HTA426 | ||
| Bacillus cereus ATCC 14579 | ||
| Bacillus halodurans C-125 | 5 | 2 |
| Bacillus clausii KSM-K16 | 1 | 1 |
| Oceanobacillus iheyensis HTE831 | ||
| Paenibacillus sp. JDR-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| BH3247 |
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Bacillus halodurans C-125 Site: position = -365 score = 132.87 sequence = ATCATCCTCGTTAGG... Gene: BH1946: transposase (01) |
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transposase (02) |
| mgtE |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -396 score = 147.76 sequence = AGGAACTTCGTTAGG... Gene: BSU13300: Magnesium transporter |
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Bacillus amyloliquefaciens FZB42 Site: position = -399 score = 146.39 sequence = AAGAACTTCGTTAGG... Gene: RBAM_013120: Magnesium transporter |
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Bacillus pumilus SAFR-032 Site: position = -370 score = 149.21 sequence = TGAGACTTCGTTAGG... Gene: BPUM_1225: Magnesium transporter |
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Bacillus licheniformis DSM 13 Site: position = -411 score = 151.05 sequence = CAGCTCTTCGTTAGG... Gene: BLi01426: Magnesium transporter |
Gene: Aflv_2108: Magnesium transporter |
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4
Bacillus halodurans C-125 Gene: BH3224: Magnesium transporter Gene: BH0511: Magnesium transporter Gene: BH1947: Magnesium transporter Gene: BH1948: Magnesium transporter |
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Bacillus clausii KSM-K16 Site: position = -378 score = 131.91 sequence = ATATATTCCTCGTTA... Gene: ABC0737: Magnesium transporter |
Gene: OB1224: Magnesium transporter |
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Magnesium transporter |
| sapB |
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Gene: BC1976: Peptide transport system permease protein sapB (TC 3.A.1.5.5) |
*2
Bacillus halodurans C-125 Site: position = -318 score = 149.52 sequence = ACAACCACTTCGTTA... Gene: BH3225: Peptide transport system permease protein sapB (TC 3.A.1.5.5) Gene: BH0541: Peptide transport system permease protein sapB (TC 3.A.1.5.5) |
Gene: ABC0863: Peptide transport system permease protein sapB (TC 3.A.1.5.5) |
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Gene: Pjdr2_1734: Peptide transport system permease protein sapB (TC 3.A.1.5.5) |
Peptide transport system permease protein sapB (TC 3.A.1.5.5) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |