Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PyrR - Bacillales

Properties
Regulator type: RNA regulatory element
Name: PyrR
RFAM: RF00515
Regulation mode:
Biological process: Pyrimidine metabolism
Effector: PyrR
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 10 3
Bacillus amyloliquefaciens FZB42 10 3
Bacillus pumilus SAFR-032 10 3
Bacillus licheniformis DSM 13 10 3
Anoxybacillus flavithermus WK1 10 3
Geobacillus kaustophilus HTA426 11 3
Bacillus cereus ATCC 14579 11 4
Bacillus halodurans C-125 10 3
Bacillus clausii KSM-K16 10 2
Oceanobacillus iheyensis HTE831 10 3
Paenibacillus sp. JDR-2 7 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pyrP
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -169
score = 64.94
sequence = TCACCTTTTTAAGGG...

Gene: BSU15480: Uracil permease
*
Bacillus amyloliquefaciens FZB42

Site:
position = -151
score = 53.83
sequence = CCCTTTTTAAATGCA...

Gene: RBAM_015310: Uracil permease
*
Bacillus pumilus SAFR-032

Site:
position = -155
score = 57.61
sequence = ACCTTTTTAAATGCA...

Gene: BPUM_1447: Uracil permease
*
Bacillus licheniformis DSM 13

Site:
position = -187
score = 63.05
sequence = TCCTTTTTTAAATGC...

Gene: BLi01768: Uracil permease
*
Anoxybacillus flavithermus WK1

Site:
position = -120
score = 52.67
sequence = GCACCCTTTTTAAAA...

Gene: Aflv_1807: Uracil permease
*
Geobacillus kaustophilus HTA426

Site:
position = -153
score = 64.19
sequence = CACCCTTTTAAGCGC...

Gene: GK1148: Uracil permease
*
Bacillus cereus ATCC 14579

Site:
position = -87
score = 82.76
sequence = AAAGCCCTTTTAAAT...

Gene: BC3890: Uracil permease
*
Bacillus halodurans C-125

Site:
position = -142
score = 54.41
sequence = CCACCTCTTTAAATC...

Gene: BH2540: Uracil permease
*
Bacillus clausii KSM-K16

Site:
position = -139
score = 66.32
sequence = AACCCTCTTTAAACG...

Gene: ABC2337: Uracil permease
*
Oceanobacillus iheyensis HTE831

Site:
position = -173
score = 58.45
sequence = AGACACCTTTAATTC...

Gene: OB2293: Uracil permease
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_0980: Uracil permease
Uracil permease
pyrB
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -146
score = 80.67
sequence = AAACCTTTTAATGAA...

Gene: BSU15490: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -141
score = 72.25
sequence = AAACCTTTTAAAGAA...

Gene: RBAM_015320: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Bacillus pumilus SAFR-032

Site:
position = -154
score = 63.86
sequence = AAACCTTTTAAAAGA...

Gene: BPUM_1448: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Bacillus licheniformis DSM 13

Site:
position = -143
score = 71.72
sequence = AAACCTTTTAAATGA...

Gene: BLi01769: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Anoxybacillus flavithermus WK1

Site:
position = -143
score = 66.97
sequence = ACACACCTTTTAAAA...

Gene: Aflv_1806: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Geobacillus kaustophilus HTA426

Site:
position = -160
score = 64.48
sequence = GCACCTTTTAATTAA...

Gene: GK1149: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Bacillus cereus ATCC 14579

Site:
position = -156
score = 49.82
sequence = AATAACCTTTTAATT...

Gene: BC3889: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Bacillus halodurans C-125

Site:
position = -223
score = 35.81
sequence = ATCGACCTTTAATGA...

Gene: BH2539: Aspartate carbamoyltransferase (EC 2.1.3.2)
 
Bacillus clausii KSM-K16

Gene: ABC2336: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Oceanobacillus iheyensis HTE831

Site:
position = -165
score = 53.4
sequence = CAGCTTTTAATCAAA...

Gene: OB1488: Aspartate carbamoyltransferase (EC 2.1.3.2)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_3864: Aspartate carbamoyltransferase (EC 2.1.3.2)
Aspartate carbamoyltransferase (EC 2.1.3.2)
pyrC
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU15500: Dihydroorotase (EC 3.5.2.3)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_015330: Dihydroorotase (EC 3.5.2.3)
 
Bacillus pumilus SAFR-032

Gene: BPUM_1449: Dihydroorotase (EC 3.5.2.3)
 
Bacillus licheniformis DSM 13

Gene: BLi01770: Dihydroorotase (EC 3.5.2.3)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1805: Dihydroorotase (EC 3.5.2.3)
 
Geobacillus kaustophilus HTA426

Gene: GK1150: Dihydroorotase (EC 3.5.2.3)
 
Bacillus cereus ATCC 14579

Gene: BC3888: Dihydroorotase (EC 3.5.2.3)
 
Bacillus halodurans C-125

Gene: BH2538: Dihydroorotase (EC 3.5.2.3)
 
Bacillus clausii KSM-K16

Gene: ABC2335: Dihydroorotase (EC 3.5.2.3)
 
Oceanobacillus iheyensis HTE831

Gene: OB1489: Dihydroorotase (EC 3.5.2.3)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_3863: Dihydroorotase (EC 3.5.2.3)
Dihydroorotase (EC 3.5.2.3)
carA
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU15510: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_015340: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 
Bacillus pumilus SAFR-032

Gene: BPUM_1450: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 
Bacillus licheniformis DSM 13

Gene: BLi01771: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1804: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 
Geobacillus kaustophilus HTA426

Gene: GK1151: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 
Bacillus cereus ATCC 14579

Gene: BC3887: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 
Bacillus halodurans C-125

Gene: BH2537: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 
Bacillus clausii KSM-K16

Gene: ABC2334: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 
Oceanobacillus iheyensis HTE831

Gene: OB1490: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_3862: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
carB
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU15520: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_015350: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Bacillus pumilus SAFR-032

Gene: BPUM_1451: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Bacillus licheniformis DSM 13

Gene: BLi01772: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1803: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Geobacillus kaustophilus HTA426

Gene: GK1152: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Bacillus cereus ATCC 14579

Gene: BC3886: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Bacillus halodurans C-125

Gene: BH2536: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Bacillus clausii KSM-K16

Gene: ABC2333: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Oceanobacillus iheyensis HTE831

Gene: OB1491: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_3861: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
pyrK
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU15530: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_015360: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Bacillus pumilus SAFR-032

Gene: BPUM_1452: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Bacillus licheniformis DSM 13

Gene: BLi01773: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1802: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Geobacillus kaustophilus HTA426

Gene: GK1153: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Bacillus cereus ATCC 14579

Gene: BC3885: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Bacillus halodurans C-125

Gene: BH2535: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Bacillus clausii KSM-K16

Gene: ABC2332: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Oceanobacillus iheyensis HTE831

Gene: OB1492: Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
 
Paenibacillus sp. JDR-2
Dihydroorotate dehydrogenase electron transfer subunit (EC 1.3.3.1)
pyrD
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU15540: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_015370: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Bacillus pumilus SAFR-032

Gene: BPUM_1453: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Bacillus licheniformis DSM 13

Gene: BLi01774: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1801: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Geobacillus kaustophilus HTA426

Gene: GK1154: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Bacillus cereus ATCC 14579

Gene: BC3884: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Bacillus halodurans C-125

Gene: BH2534: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Bacillus clausii KSM-K16

Gene: ABC2331: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Oceanobacillus iheyensis HTE831

Gene: OB1493: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Paenibacillus sp. JDR-2
Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
pyrF
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU15550: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_015380: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Bacillus pumilus SAFR-032

Gene: BPUM_1454: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Bacillus licheniformis DSM 13

Gene: BLi01775: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1800: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Geobacillus kaustophilus HTA426

Gene: GK1155: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Bacillus cereus ATCC 14579

Gene: BC3883: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Bacillus halodurans C-125

Gene: BH2533: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Bacillus clausii KSM-K16

Gene: ABC2330: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Oceanobacillus iheyensis HTE831

Gene: OB1494: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_3860: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
pyrE
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU15560: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_015390: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Bacillus pumilus SAFR-032

Gene: BPUM_1455: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Bacillus licheniformis DSM 13

Gene: BLi01776: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1799: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Geobacillus kaustophilus HTA426

Gene: GK1157: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Bacillus cereus ATCC 14579

Gene: BC3882: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Bacillus halodurans C-125

Gene: BH2532: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Bacillus clausii KSM-K16

Gene: ABC2329: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Oceanobacillus iheyensis HTE831

Gene: OB1495: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_3859: Orotate phosphoribosyltransferase (EC 2.4.2.10)
Orotate phosphoribosyltransferase (EC 2.4.2.10)
GK1156
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426

Gene: GK1156: Hypothetical protein
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Hypothetical protein
pyrR
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -142
score = 77.59
sequence = GATTCTTTAAAACAG...

Gene: BSU15470: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
*
Bacillus amyloliquefaciens FZB42

Site:
position = -147
score = 64.54
sequence = GATTCTTTAACACAG...

Gene: RBAM_015300: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
*
Bacillus pumilus SAFR-032

Site:
position = -130
score = 65.27
sequence = GATTCTTTAAAACAG...

Gene: BPUM_1446: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
*
Bacillus licheniformis DSM 13

Site:
position = -136
score = 63.43
sequence = GATTCTTTAACACAG...

Gene: BLi01767: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
*
Anoxybacillus flavithermus WK1

Site:
position = -97
score = 63.77
sequence = AAAGACCTTTAAGTT...

Gene: Aflv_1808: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
*
Geobacillus kaustophilus HTA426

Site:
position = -143
score = 71.93
sequence = GAACCTTTAAGTTCA...

Gene: GK1147: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
*
Bacillus cereus ATCC 14579

Site:
position = -157
score = 55.13
sequence = ATGATCCTTTAACAC...

Gene: BC3891: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
*
Bacillus halodurans C-125

Site:
position = -172
score = 67.6
sequence = AAGCTCCTTTAATGT...

Gene: BH2541: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
*
Bacillus clausii KSM-K16

Site:
position = -59
score = 64.13
sequence = AACGTCCTTTAAACG...

Gene: ABC2338: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
*
Oceanobacillus iheyensis HTE831

Site:
position = -115
score = 64.09
sequence = GAACCTTTAAAAAAT...

Gene: OB1487: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
*
Paenibacillus sp. JDR-2

Site:
position = -229
score = 60.22
sequence = CAGTACCTTTAAATC...

Gene: Pjdr2_3865: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
 
CRON 2.
BC5442
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -165
score = 55.76
sequence = AGTCCTTTAACCCAA...

Gene: BC5442: Major facilitator superfamily (MFS) transport protein
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Major facilitator superfamily (MFS) transport protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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