Regulog PyrR - Staphylococcaceae

Properties
Regulator type:	RNA regulatory element
Name:	PyrR
RFAM:	RF00515
Regulation mode:
Biological process:	Pyrimidine metabolism
Effector:	PyrR
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Staphylococcaceae
By RNA motif - PyrR
By effector - PyrR
By pathway - Pyrimidine metabolism

Statistics of regulated genes
Genome	Genes	Operons
Staphylococcus aureus subsp. aureus N315	8	1
Staphylococcus capitis SK14	1	1
Staphylococcus epidermidis ATCC 12228	9	2
Staphylococcus carnosus subsp. carnosus TM300	11	2
Staphylococcus haemolyticus JCSC1435	9	2
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	9	2
Macrococcus caseolyticus JCSC5402	10	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes								Function

CRON 1.
pyrR	Staphylococcus aureus subsp. aureus N315 Gene: SA1041: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR	* Staphylococcus capitis SK14 Site: position = -227 score = 26.09 sequence = TCGTCTTTAATTGCG... Gene: STACA0001_2193: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR	* Staphylococcus epidermidis ATCC 12228 Site: position = -205 score = 23.65 sequence = TCATCTTTAATTGAG... Gene: SE0873: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR	* Staphylococcus carnosus subsp. carnosus TM300 Site: position = -215 score = 34.64 sequence = AAGTCTTTAATTGAG... Gene: Sca_0812: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR	* Staphylococcus haemolyticus JCSC1435 Site: position = -206 score = 25.94 sequence = CGGTGTCTTTAAAAG... Gene: SH1716: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -128 score = 20.36 sequence = GAAATCAGCTTGGAT... Site: position = -283 score = 36.27 sequence = GTACGTCTTTAATTG... Gene: SSP1574: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR	* Macrococcus caseolyticus JCSC5402 Site: position = -86 score = 49.77 sequence = AAGCTTTTAAATAAG... Gene: MCCL_0768: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR	Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR

CRON 2.
pyrP	* Staphylococcus aureus subsp. aureus N315 Site: position = -216 score = 23.06 sequence = ACCCCTTTTAATTCA... Gene: SA1042: Uracil permease	Staphylococcus capitis SK14 Gene: STACA0001_2194: Uracil permease	* Staphylococcus epidermidis ATCC 12228 Site: position = -231 score = 18.95 sequence = TATCCTTTTAAAACA... Gene: SE0875: Uracil permease	* Staphylococcus carnosus subsp. carnosus TM300 Site: position = -220 score = 21.12 sequence = TACCCTTTTAAATCA... Gene: Sca_0813: Uracil permease	* Staphylococcus haemolyticus JCSC1435 Site: position = -234 score = 20.88 sequence = AAAGACCTTTTAAAT... Gene: SH1715: Uracil permease	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -276 score = 21.36 sequence = TAACACCTTTTAATT... Gene: SSP1573: Uracil permease	* Macrococcus caseolyticus JCSC5402 Site: position = -107 score = 42.74 sequence = ATCCTTTTAAATTGG... Gene: MCCL_0769: Uracil permease	Uracil permease
pyrB	Staphylococcus aureus subsp. aureus N315 Gene: SA1043: Aspartate carbamoyltransferase (EC 2.1.3.2)	Staphylococcus capitis SK14 Gene: STACA0001_2195: Aspartate carbamoyltransferase (EC 2.1.3.2)	Staphylococcus epidermidis ATCC 12228 Gene: SE0876: Aspartate carbamoyltransferase (EC 2.1.3.2)	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_0814: Aspartate carbamoyltransferase (EC 2.1.3.2)	Staphylococcus haemolyticus JCSC1435 Gene: SH1714: Aspartate carbamoyltransferase (EC 2.1.3.2)	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP1572: Aspartate carbamoyltransferase (EC 2.1.3.2)	Macrococcus caseolyticus JCSC5402 Gene: MCCL_0770: Aspartate carbamoyltransferase (EC 2.1.3.2)	Aspartate carbamoyltransferase (EC 2.1.3.2)
pyrC	Staphylococcus aureus subsp. aureus N315 Gene: SA1044: Dihydroorotase (EC 3.5.2.3)	Staphylococcus capitis SK14 Gene: STACA0001_2196: Dihydroorotase (EC 3.5.2.3)	Staphylococcus epidermidis ATCC 12228 Gene: SE0877: Dihydroorotase (EC 3.5.2.3)	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_0815: Dihydroorotase (EC 3.5.2.3)	Staphylococcus haemolyticus JCSC1435 Gene: SH1713: Dihydroorotase (EC 3.5.2.3)	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP1571: Dihydroorotase (EC 3.5.2.3)	Macrococcus caseolyticus JCSC5402 Gene: MCCL_0771: Dihydroorotase (EC 3.5.2.3)	Dihydroorotase (EC 3.5.2.3)
carA	Staphylococcus aureus subsp. aureus N315 Gene: SA1045: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Staphylococcus capitis SK14 Gene: STACA0001_2197: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Staphylococcus epidermidis ATCC 12228 Gene: SE0878: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_0816: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Staphylococcus haemolyticus JCSC1435 Gene: SH1712: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP1570: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Macrococcus caseolyticus JCSC5402 Gene: MCCL_0772: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
carB	Staphylococcus aureus subsp. aureus N315 Gene: SA1046: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Staphylococcus capitis SK14 Gene: STACA0001_2198: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Staphylococcus epidermidis ATCC 12228 Gene: SE0879: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_0817: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Staphylococcus haemolyticus JCSC1435 Gene: SH1711: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP1569: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Macrococcus caseolyticus JCSC5402 Gene: MCCL_0773: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
pyrK	Staphylococcus aureus subsp. aureus N315	Staphylococcus capitis SK14	Staphylococcus epidermidis ATCC 12228	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_0818: Dihydroorotate dehydrogenase electron transfer subunit	Staphylococcus haemolyticus JCSC1435	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	Macrococcus caseolyticus JCSC5402 Gene: MCCL_0774: Dihydroorotate dehydrogenase electron transfer subunit	Dihydroorotate dehydrogenase electron transfer subunit
pyrD	Staphylococcus aureus subsp. aureus N315	Staphylococcus capitis SK14	Staphylococcus epidermidis ATCC 12228	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_0819: Dihydroorotate dehydrogenase (EC 1.3.3.1)	Staphylococcus haemolyticus JCSC1435	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	Macrococcus caseolyticus JCSC5402 Gene: MCCL_0775: Dihydroorotate dehydrogenase (EC 1.3.3.1)	Dihydroorotate dehydrogenase (EC 1.3.3.1)
pyrF	Staphylococcus aureus subsp. aureus N315 Gene: SA1047: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	Staphylococcus capitis SK14 Gene: STACA0001_2199: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	Staphylococcus epidermidis ATCC 12228 Gene: SE0880: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_0820: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	Staphylococcus haemolyticus JCSC1435 Gene: SH1710: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP1568: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	Macrococcus caseolyticus JCSC5402 Gene: MCCL_0776: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
pyrE	Staphylococcus aureus subsp. aureus N315 Gene: SA1048: Orotate phosphoribosyltransferase (EC 2.4.2.10)	Staphylococcus capitis SK14 Gene: STACA0001_2200: Orotate phosphoribosyltransferase (EC 2.4.2.10)	Staphylococcus epidermidis ATCC 12228 Gene: SE0881: Orotate phosphoribosyltransferase (EC 2.4.2.10)	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_0821: Orotate phosphoribosyltransferase (EC 2.4.2.10)	Staphylococcus haemolyticus JCSC1435 Gene: SH1709: Orotate phosphoribosyltransferase (EC 2.4.2.10)	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP1567: Orotate phosphoribosyltransferase (EC 2.4.2.10)	Macrococcus caseolyticus JCSC5402 Gene: MCCL_0777: Orotate phosphoribosyltransferase (EC 2.4.2.10)	Orotate phosphoribosyltransferase (EC 2.4.2.10)
STACA0001_2201	Staphylococcus aureus subsp. aureus N315 Gene: SA1049: Conserved hypothetical protein	Staphylococcus capitis SK14 Gene: STACA0001_2201: Conserved hypothetical protein	Staphylococcus epidermidis ATCC 12228 Gene: SE0882: Conserved hypothetical protein	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_0822: Conserved hypothetical protein	Staphylococcus haemolyticus JCSC1435 Gene: SH1708: Conserved hypothetical protein	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP1566: Conserved hypothetical protein	Macrococcus caseolyticus JCSC5402	Conserved hypothetical protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PyrR - Staphylococcaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --