Regulog PyrR - Staphylococcaceae
| Regulator type: | RNA regulatory element |
| Name: | PyrR |
| RFAM: | RF00515 |
| Regulation mode: | |
| Biological process: | Pyrimidine metabolism |
| Effector: | PyrR |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Staphylococcaceae
- By RNA motif - PyrR
- By effector - PyrR
- By pathway - Pyrimidine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Staphylococcus aureus subsp. aureus N315 | 8 | 1 |
| Staphylococcus capitis SK14 | 1 | 1 |
| Staphylococcus epidermidis ATCC 12228 | 9 | 2 |
| Staphylococcus carnosus subsp. carnosus TM300 | 11 | 2 |
| Staphylococcus haemolyticus JCSC1435 | 9 | 2 |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | 9 | 2 |
| Macrococcus caseolyticus JCSC5402 | 10 | 2 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| pyrR |
Gene: SA1041: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
*
Staphylococcus capitis SK14 Site: position = -227 score = 26.09 sequence = TCGTCTTTAATTGCG... Gene: STACA0001_2193: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -205 score = 23.65 sequence = TCATCTTTAATTGAG... Gene: SE0873: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -215 score = 34.64 sequence = AAGTCTTTAATTGAG... Gene: Sca_0812: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -206 score = 25.94 sequence = CGGTGTCTTTAAAAG... Gene: SH1716: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -128 score = 20.36 sequence = GAAATCAGCTTGGAT... Site: position = -283 score = 36.27 sequence = GTACGTCTTTAATTG... Gene: SSP1574: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
*
Macrococcus caseolyticus JCSC5402 Site: position = -86 score = 49.77 sequence = AAGCTTTTAAATAAG... Gene: MCCL_0768: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
| CRON 2. | ||||||||
| pyrP |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -216 score = 23.06 sequence = ACCCCTTTTAATTCA... Gene: SA1042: Uracil permease |
Gene: STACA0001_2194: Uracil permease |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -231 score = 18.95 sequence = TATCCTTTTAAAACA... Gene: SE0875: Uracil permease |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -220 score = 21.12 sequence = TACCCTTTTAAATCA... Gene: Sca_0813: Uracil permease |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -234 score = 20.88 sequence = AAAGACCTTTTAAAT... Gene: SH1715: Uracil permease |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -276 score = 21.36 sequence = TAACACCTTTTAATT... Gene: SSP1573: Uracil permease |
*
Macrococcus caseolyticus JCSC5402 Site: position = -107 score = 42.74 sequence = ATCCTTTTAAATTGG... Gene: MCCL_0769: Uracil permease |
Uracil permease |
| pyrB |
Gene: SA1043: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Gene: STACA0001_2195: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Gene: SE0876: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Gene: Sca_0814: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Gene: SH1714: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Gene: SSP1572: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Gene: MCCL_0770: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Aspartate carbamoyltransferase (EC 2.1.3.2) |
| pyrC |
Gene: SA1044: Dihydroorotase (EC 3.5.2.3) |
Gene: STACA0001_2196: Dihydroorotase (EC 3.5.2.3) |
Gene: SE0877: Dihydroorotase (EC 3.5.2.3) |
Gene: Sca_0815: Dihydroorotase (EC 3.5.2.3) |
Gene: SH1713: Dihydroorotase (EC 3.5.2.3) |
Gene: SSP1571: Dihydroorotase (EC 3.5.2.3) |
Gene: MCCL_0771: Dihydroorotase (EC 3.5.2.3) |
Dihydroorotase (EC 3.5.2.3) |
| carA |
Gene: SA1045: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: STACA0001_2197: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: SE0878: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: Sca_0816: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: SH1712: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: SSP1570: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: MCCL_0772: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
| carB |
Gene: SA1046: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: STACA0001_2198: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: SE0879: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: Sca_0817: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: SH1711: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: SSP1569: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: MCCL_0773: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
| pyrK |
|
|
|
Gene: Sca_0818: Dihydroorotate dehydrogenase electron transfer subunit |
|
|
Gene: MCCL_0774: Dihydroorotate dehydrogenase electron transfer subunit |
Dihydroorotate dehydrogenase electron transfer subunit |
| pyrD |
|
|
|
Gene: Sca_0819: Dihydroorotate dehydrogenase (EC 1.3.3.1) |
|
|
Gene: MCCL_0775: Dihydroorotate dehydrogenase (EC 1.3.3.1) |
Dihydroorotate dehydrogenase (EC 1.3.3.1) |
| pyrF |
Gene: SA1047: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: STACA0001_2199: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: SE0880: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: Sca_0820: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: SH1710: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: SSP1568: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: MCCL_0776: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
| pyrE |
Gene: SA1048: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
Gene: STACA0001_2200: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
Gene: SE0881: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
Gene: Sca_0821: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
Gene: SH1709: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
Gene: SSP1567: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
Gene: MCCL_0777: Orotate phosphoribosyltransferase (EC 2.4.2.10) |
Orotate phosphoribosyltransferase (EC 2.4.2.10) |
| STACA0001_2201 |
Gene: SA1049: Conserved hypothetical protein |
Gene: STACA0001_2201: Conserved hypothetical protein |
Gene: SE0882: Conserved hypothetical protein |
Gene: Sca_0822: Conserved hypothetical protein |
Gene: SH1708: Conserved hypothetical protein |
Gene: SSP1566: Conserved hypothetical protein |
|
Conserved hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |