Regulog GEMM_RNA_motif - Cyanobacteria

Properties
Regulator type:	RNA regulatory element
Name:	GEMM_RNA_motif
RFAM:	RF01051
Regulation mode:
Biological process:	Second messenger response
Effector:	Cyclic diguanylate
Phylum:	Cyanobacteria

Member of regulog collections

By taxonomy - Cyanobacteria
By RNA motif - GEMM_RNA_motif
By effector - Cyclic diguanylate
By pathway - Second messenger response

Statistics of regulated genes
Genome	Genes	Operons
Synechococcus sp. PCC 7002
Synechocystis sp. PCC 6803
Cyanothece sp. ATCC 51142
Cyanothece sp. PCC 8801
Cyanothece sp. PCC 7425	5	5
Microcystis aeruginosa NIES-843
Nostoc sp. PCC 7120
Trichodesmium erythraeum IMS101
Synechococcus elongatus PCC 7942
Prochlorococcus marinus str. MIT 9313
Synechococcus sp. JA-3-3Ab
Synechococcus sp. WH 8102
Gloeobacter violaceus PCC 7421
Thermosynechococcus elongatus BP-1	1	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes															Function

CRON 1.
Cyan7425_2124	Synechococcus sp. PCC 7002	Synechocystis sp. PCC 6803	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 8801	* Cyanothece sp. PCC 7425 Site: position = -199 score = 35.98 sequence = TCCCGAAAAGGCAAC... Gene: Cyan7425_2124: Hypothetical protein	Microcystis aeruginosa NIES-843	Nostoc sp. PCC 7120	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942	Prochlorococcus marinus str. MIT 9313	Synechococcus sp. JA-3-3Ab	Synechococcus sp. WH 8102	Gloeobacter violaceus PCC 7421	Thermosynechococcus elongatus BP-1	Hypothetical protein

CRON 2.
Cyan7425_0032	Synechococcus sp. PCC 7002	Synechocystis sp. PCC 6803	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 8801	* Cyanothece sp. PCC 7425 Site: position = -431 score = 35.81 sequence = TCCCGAAAAGGCAAC... Gene: Cyan7425_0032: Hypothetical protein	Microcystis aeruginosa NIES-843	Nostoc sp. PCC 7120	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942	Prochlorococcus marinus str. MIT 9313	Synechococcus sp. JA-3-3Ab	Synechococcus sp. WH 8102	Gloeobacter violaceus PCC 7421	Thermosynechococcus elongatus BP-1	Hypothetical protein

CRON 3.
tlr0560	Synechococcus sp. PCC 7002	Synechocystis sp. PCC 6803	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 8801	Cyanothece sp. PCC 7425	Microcystis aeruginosa NIES-843	Nostoc sp. PCC 7120	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942	Prochlorococcus marinus str. MIT 9313	Synechococcus sp. JA-3-3Ab	Synechococcus sp. WH 8102	Gloeobacter violaceus PCC 7421	* Thermosynechococcus elongatus BP-1 Site: position = -287 score = 33.71 sequence = CCCGATAAAGGTAAG... Gene: tlr0560: Hypothetical protein	Hypothetical protein

CRON 4.
Cyan7425_1496	Synechococcus sp. PCC 7002	Synechocystis sp. PCC 6803	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 8801	7 Cyanothece sp. PCC 7425* Gene: Cyan7425_4838: Transcriptional regulator, XRE family Gene: Cyan7425_1496: Transcriptional regulator, XRE family Site: position = -340 score = 36.08 sequence = AGTCCCGAAAAGGCA... Gene: Cyan7425_0305: Transcriptional regulator, XRE family Gene: Cyan7425_2649: Transcriptional regulator, XRE family Site: position = -301 score = 32.81 sequence = AGTCCCGAAAAAGCA... Gene: Cyan7425_5459: Transcriptional regulator, XRE family Site: position = -340 score = 33.32 sequence = AGTCCCGAAAAGGCA... Gene: Cyan7425_5453: Transcriptional regulator, XRE family Gene: Cyan7425_3037: Transcriptional regulator, XRE family	Microcystis aeruginosa NIES-843	Nostoc sp. PCC 7120	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942	Prochlorococcus marinus str. MIT 9313	Synechococcus sp. JA-3-3Ab	Synechococcus sp. WH 8102	Gloeobacter violaceus PCC 7421	Thermosynechococcus elongatus BP-1	Transcriptional regulator, XRE family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GEMM_RNA_motif - Cyanobacteria

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --