Regulog GEMM_RNA_motif - Cyanobacteria
| Regulator type: | RNA regulatory element |
| Name: | GEMM_RNA_motif |
| RFAM: | RF01051 |
| Regulation mode: | |
| Biological process: | Second messenger response |
| Effector: | Cyclic diguanylate |
| Phylum: | Cyanobacteria |
Member of regulog collections
- By taxonomy - Cyanobacteria
- By RNA motif - GEMM_RNA_motif
- By effector - Cyclic diguanylate
- By pathway - Second messenger response
| Genome | Genes | Operons |
|---|---|---|
| Synechococcus sp. PCC 7002 | ||
| Synechocystis sp. PCC 6803 | ||
| Cyanothece sp. ATCC 51142 | ||
| Cyanothece sp. PCC 8801 | ||
| Cyanothece sp. PCC 7425 | 5 | 5 |
| Microcystis aeruginosa NIES-843 | ||
| Nostoc sp. PCC 7120 | ||
| Trichodesmium erythraeum IMS101 | ||
| Synechococcus elongatus PCC 7942 | ||
| Prochlorococcus marinus str. MIT 9313 | ||
| Synechococcus sp. JA-3-3Ab | ||
| Synechococcus sp. WH 8102 | ||
| Gloeobacter violaceus PCC 7421 | ||
| Thermosynechococcus elongatus BP-1 | 1 | 1 |
| Genes | Function | ||||||||||||||
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| CRON 1. | |||||||||||||||
| Cyan7425_2124 |
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Cyanothece sp. PCC 7425 Site: position = -199 score = 35.98 sequence = TCCCGAAAAGGCAAC... Gene: Cyan7425_2124: Hypothetical protein |
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Hypothetical protein |
| CRON 2. | |||||||||||||||
| Cyan7425_0032 |
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Cyanothece sp. PCC 7425 Site: position = -431 score = 35.81 sequence = TCCCGAAAAGGCAAC... Gene: Cyan7425_0032: Hypothetical protein |
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Hypothetical protein |
| CRON 3. | |||||||||||||||
| tlr0560 |
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Thermosynechococcus elongatus BP-1 Site: position = -287 score = 33.71 sequence = CCCGATAAAGGTAAG... Gene: tlr0560: Hypothetical protein |
Hypothetical protein |
| CRON 4. | |||||||||||||||
| Cyan7425_1496 |
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*7
Cyanothece sp. PCC 7425 Gene: Cyan7425_4838: Transcriptional regulator, XRE family Gene: Cyan7425_1496: Transcriptional regulator, XRE family Site: position = -340 score = 36.08 sequence = AGTCCCGAAAAGGCA... Gene: Cyan7425_0305: Transcriptional regulator, XRE family Gene: Cyan7425_2649: Transcriptional regulator, XRE family Site: position = -301 score = 32.81 sequence = AGTCCCGAAAAAGCA... Gene: Cyan7425_5459: Transcriptional regulator, XRE family Site: position = -340 score = 33.32 sequence = AGTCCCGAAAAGGCA... Gene: Cyan7425_5453: Transcriptional regulator, XRE family Gene: Cyan7425_3037: Transcriptional regulator, XRE family |
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Transcriptional regulator, XRE family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |