Regulog GEMM_RNA_motif - Ralstonia
| Regulator type: | RNA regulatory element |
| Name: | GEMM_RNA_motif |
| RFAM: | RF01051 |
| Regulation mode: | |
| Biological process: | Second messenger response |
| Effector: | Cyclic diguanylate |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Ralstonia
- By RNA motif - GEMM_RNA_motif
- By effector - Cyclic diguanylate
- By pathway - Second messenger response
| Genome | Genes | Operons |
|---|---|---|
| Ralstonia solanacearum GMI1000 | ||
| Ralstonia pickettii 12J | 1 | 1 |
| Ralstonia metallidurans CH34 | ||
| Ralstonia eutropha JMP134 | ||
| Ralstonia eutropha H16 | ||
| Cupriavidus taiwanensis |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| PF12138 |
Gene: RS01997: Conserved hypothetical signal peptide protein, PF12138 |
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Ralstonia pickettii 12J Site: position = -143 score = 45.16 sequence = CCAGAGGTCTGGGCA... Gene: Rpic_3899: Conserved hypothetical signal peptide protein, PF12138 |
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Conserved hypothetical signal peptide protein, PF12138 |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |