Regulog GEMM_RNA_motif - Bacillales

Properties
Regulator type:	RNA regulatory element
Name:	GEMM_RNA_motif
RFAM:	RF01051
Regulation mode:
Biological process:	Second messenger response
Effector:	Cyclic diguanylate
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Bacillales
By RNA motif - GEMM_RNA_motif
By effector - Cyclic diguanylate
By pathway - Second messenger response

Statistics of regulated genes
Genome	Genes	Operons
Bacillus subtilis subsp. subtilis str. 168
Bacillus amyloliquefaciens FZB42
Bacillus pumilus SAFR-032	6	1
Bacillus licheniformis DSM 13	4	1
Anoxybacillus flavithermus WK1	3	2
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579	2	2
Bacillus halodurans C-125	3	1
Bacillus clausii KSM-K16
Oceanobacillus iheyensis HTE831	1	1
Paenibacillus sp. JDR-2	1	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
sinR	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU24610: SinR, regulator of post-exponential-phase responses genes (competence and sporulation)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_022930: SinR, regulator of post-exponential-phase responses genes (competence and sporulation)	Bacillus pumilus SAFR-032 Gene: BPUM_2193: SinR, regulator of post-exponential-phase responses genes (competence and sporulation)	Bacillus licheniformis DSM 13 Gene: BLi02636: SinR, regulator of post-exponential-phase responses genes (competence and sporulation)	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579 Gene: BC1282: SinR, regulator of post-exponential-phase responses genes (competence and sporulation)	Bacillus halodurans C-125 Gene: BH2125: SinR, regulator of post-exponential-phase responses genes (competence and sporulation)	Bacillus clausii KSM-K16	* Oceanobacillus iheyensis HTE831 Site: position = -315 score = 72.74 sequence = CCTCAGAAAAAGGCA... Gene: OB2524: SinR, regulator of post-exponential-phase responses genes (competence and sporulation)	Paenibacillus sp. JDR-2	SinR, regulator of post-exponential-phase responses genes (competence and sporulation)

CRON 2.
tlpA	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	* Anoxybacillus flavithermus WK1 Site: position = -190 score = 68.02 sequence = TGAATAATCGGCAAA... Gene: Aflv_0339: Methyl-accepting chemotaxis sensory transducer	Geobacillus kaustophilus HTA426	* Bacillus cereus ATCC 14579 Site: position = -218 score = 60.98 sequence = AGCGAGAAAGGCAAA... Gene: BC0422: Methyl-accepting chemotaxis sensory transducer	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	* Paenibacillus sp. JDR-2 Site: position = -181 score = 74.42 sequence = AAACTGAAAAAGGCA... Gene: Pjdr2_3934: Methyl-accepting chemotaxis sensory transducer	Methyl-accepting chemotaxis sensory transducer

CRON 3.
Aflv_1600	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	* Anoxybacillus flavithermus WK1 Site: position = -65 score = 63.12 sequence = TAAGAAGTAAAGGCA... Gene: Aflv_1600: Hypothetical protein	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Hypothetical protein
sspH	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1 Gene: Aflv_1599: Small, acid-soluble spore protein H	Geobacillus kaustophilus HTA426 Gene: GK2129: Small, acid-soluble spore protein H	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Small, acid-soluble spore protein H

CRON 4.
BC1060	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	* Bacillus cereus ATCC 14579 Site: position = -151 score = 52.05 sequence = GATATTTTTAGCACA... Gene: BC1060: Collagen adhesin	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Collagen adhesin

CRON 5.
BH0563	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	* Bacillus halodurans C-125 Site: position = -202 score = 46.03 sequence = CTTGAAAAAGGCGAG... Gene: BH0563: Hypothetical protein	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Hypothetical protein
BH0564	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0564: Hypothetical protein	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Hypothetical protein
mcp	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1 Gene: Aflv_2244: Methyl-accepting chemotaxis protein	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0565: Methyl-accepting chemotaxis protein	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Methyl-accepting chemotaxis protein

CRON 6.
srfAA	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU03480: Surfactin synthetase subunit 1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_003650: Surfactin synthetase subunit 1	* Bacillus pumilus SAFR-032 Site: position = -232 score = 66.4 sequence = GAAGAAAAAGGCAAA... Gene: BPUM_0319: Surfactin synthetase subunit 1	* Bacillus licheniformis DSM 13 Site: position = -269 score = 69.61 sequence = GCAGATAAAGGCAAA... Gene: BLi00401: Surfactin synthetase subunit 1	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Surfactin synthetase subunit 1
srfAB	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU03490: Surfactin synthetase subunit 2	Bacillus amyloliquefaciens FZB42 Gene: RBAM_003660: Surfactin synthetase subunit 2	Bacillus pumilus SAFR-032 Gene: BPUM_0320: Surfactin synthetase subunit 2	Bacillus licheniformis DSM 13 Gene: BLi00402: Surfactin synthetase subunit 2	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Surfactin synthetase subunit 2
srfAC	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU03510: Surfactin synthetase subunit 1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_003680: Surfactin synthetase subunit 1	Bacillus pumilus SAFR-032 Gene: BPUM_0321: Surfactin synthetase subunit 1	Bacillus licheniformis DSM 13 Gene: BLi00403: Surfactin synthetase subunit 1	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Surfactin synthetase subunit 1
BPUM_0322	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032 Gene: BPUM_0322: Peptide antibiotics synthetase	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Peptide antibiotics synthetase
BPUM_0323	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032 Gene: BPUM_0323: Peptide antibiotics synthetase	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Peptide antibiotics synthetase
srfAD	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU03520: Surfactin synthetase thioesterase subunit (EC 3.1.2.-)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_003690: Surfactin synthetase thioesterase subunit (EC 3.1.2.-)	Bacillus pumilus SAFR-032 Gene: BPUM_0324: Surfactin synthetase thioesterase subunit (EC 3.1.2.-)	Bacillus licheniformis DSM 13 Gene: BLi00404: Surfactin synthetase thioesterase subunit (EC 3.1.2.-)	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Surfactin synthetase thioesterase subunit (EC 3.1.2.-)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GEMM_RNA_motif - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --