Regulog MOCO_RNA_motif - Shewanellaceae

Properties
Regulator type:	RNA regulatory element
Name:	MOCO_RNA_motif
RFAM:	RF01055
Regulation mode:
Biological process:	Molybdopterin biosynthesis; Molybdenum homeostasis
Effector:	Molybdenum
Phylum:	Proteobacteria

Member of regulog collections

By taxonomy - Shewanellaceae
By RNA motif - MOCO_RNA_motif
By effector - Molybdenum
By pathway - Molybdopterin biosynthesis
By pathway - Molybdenum homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Shewanella oneidensis MR-1	7	1
Shewanella putrefaciens CN-32	7	1
Shewanella sp W3-18-1	7	1
Shewanella sp ANA-3	7	1
Shewanella sp MR-4	7	1
Shewanella sp MR-7	7	1
Shewanella baltica OS155	7	1
Shewanella denitrificans OS217	7	1
Shewanella frigidimarina NCIMB 400	7	1
Shewanella amazonensis SB2B	8	1
Shewanella loihica PV-4	8	1
Shewanella pealeana ATCC 700345	8	1
Shewanella halifaxensis HAW-EB4	8	1
Shewanella piezotolerans WP3	8	1
Shewanella sediminis HAW-EB3	8	1
Shewanella woodyi ATCC 51908	8	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																	Function

CRON 1.
moaA	* Shewanella oneidensis MR-1 Site: position = -122 score = 94.21 sequence = ACAGCTGACGGTTCT... Gene: SO_4452: Molybdenum cofactor biosynthesis protein MoaA	* Shewanella putrefaciens CN-32 Site: position = -87 score = 88.98 sequence = CAGCGACGGTTCTCC... Gene: Sputcn32_0389: Molybdenum cofactor biosynthesis protein MoaA	* Shewanella sp W3-18-1 Site: position = -87 score = 88.98 sequence = CAGCGACGGTTCTCC... Gene: Sputw3181_0243: Molybdenum cofactor biosynthesis protein MoaA	* Shewanella sp ANA-3 Site: position = -87 score = 91.73 sequence = GAATGACGGTTCTCC... Gene: Shewana3_0274: Molybdenum cofactor biosynthesis protein MoaA	* Shewanella sp MR-4 Site: position = -87 score = 95.76 sequence = GAATGACGGTTCTCC... Gene: Shewmr4_0273: Molybdenum cofactor biosynthesis protein MoaA	* Shewanella sp MR-7 Site: position = -89 score = 95.76 sequence = ACGAATGACGGTTCT... Gene: Shewmr7_3748: Molybdenum cofactor biosynthesis protein MoaA	* Shewanella baltica OS155 Site: position = -87 score = 93.83 sequence = CGGTGACGGTTCTCC... Gene: Sbal_0284: Molybdenum cofactor biosynthesis protein MoaA	* Shewanella denitrificans OS217 Site: position = -87 score = 91.28 sequence = CATTGACGGTTCTCC... Gene: Sden_0101: Molybdenum cofactor biosynthesis protein MoaA	* Shewanella frigidimarina NCIMB 400 Site: position = -86 score = 90.84 sequence = ATCTGACGGTTCTCC... Gene: Sfri_0082: Molybdenum cofactor biosynthesis protein MoaA	* Shewanella amazonensis SB2B Site: position = -79 score = 89.29 sequence = CAATGACGGTTCTCC... Gene: Sama_3524: Molybdenum cofactor biosynthesis protein MoaA	* Shewanella loihica PV-4 Site: position = -88 score = 95.4 sequence = AAACGACGGTTCTCC... Gene: Shew_0087: Molybdenum cofactor biosynthesis protein MoaA	* Shewanella pealeana ATCC 700345 Site: position = -125 score = 97.39 sequence = AAGGTTGACGGTTCT... Gene: Spea_4120: Molybdenum cofactor biosynthesis protein MoaA	* Shewanella halifaxensis HAW-EB4 Site: position = -123 score = 96.57 sequence = GGTTGACGGTTCTCC... Gene: Shal_0122: Molybdenum cofactor biosynthesis protein MoaA	* Shewanella piezotolerans WP3 Site: position = -125 score = 96.1 sequence = AAATCTGACGGTTCT... Gene: swp_5009: Molybdenum cofactor biosynthesis protein MoaA	* Shewanella sediminis HAW-EB3 Site: position = -123 score = 93.57 sequence = AGCCCTGACGGTTCT... Gene: Ssed_4402: Molybdenum cofactor biosynthesis protein MoaA	* Shewanella woodyi ATCC 51908 Site: position = -123 score = 96.91 sequence = CTCACTGACGGTTCT... Gene: Swoo_4793: Molybdenum cofactor biosynthesis protein MoaA	Molybdenum cofactor biosynthesis protein MoaA
moaB	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B Gene: Sama_3525: Molybdenum cofactor biosynthesis protein MoaB	Shewanella loihica PV-4 Gene: Shew_0088: Molybdenum cofactor biosynthesis protein MoaB	Shewanella pealeana ATCC 700345 Gene: Spea_4119: Molybdenum cofactor biosynthesis protein MoaB	Shewanella halifaxensis HAW-EB4 Gene: Shal_0123: Molybdenum cofactor biosynthesis protein MoaB	Shewanella piezotolerans WP3 Gene: swp_5008: Molybdenum cofactor biosynthesis protein MoaB	Shewanella sediminis HAW-EB3 Gene: Ssed_4401: Molybdenum cofactor biosynthesis protein MoaB	Shewanella woodyi ATCC 51908 Gene: Swoo_4792: Molybdenum cofactor biosynthesis protein MoaB	Molybdenum cofactor biosynthesis protein MoaB
moaC	Shewanella oneidensis MR-1 Gene: SO_4451: Molybdenum cofactor biosynthesis protein MoaC	Shewanella putrefaciens CN-32 Gene: Sputcn32_0390: Molybdenum cofactor biosynthesis protein MoaC	Shewanella sp W3-18-1 Gene: Sputw3181_0244: Molybdenum cofactor biosynthesis protein MoaC	Shewanella sp ANA-3 Gene: Shewana3_0275: Molybdenum cofactor biosynthesis protein MoaC	Shewanella sp MR-4 Gene: Shewmr4_0274: Molybdenum cofactor biosynthesis protein MoaC	Shewanella sp MR-7 Gene: Shewmr7_3747: Molybdenum cofactor biosynthesis protein MoaC	Shewanella baltica OS155 Gene: Sbal_0285: Molybdenum cofactor biosynthesis protein MoaC	Shewanella denitrificans OS217 Gene: Sden_0102: Molybdenum cofactor biosynthesis protein MoaC	Shewanella frigidimarina NCIMB 400 Gene: Sfri_0083: Molybdenum cofactor biosynthesis protein MoaC	Shewanella amazonensis SB2B Gene: Sama_3526: Molybdenum cofactor biosynthesis protein MoaC	Shewanella loihica PV-4 Gene: Shew_0089: Molybdenum cofactor biosynthesis protein MoaC	Shewanella pealeana ATCC 700345 Gene: Spea_4118: Molybdenum cofactor biosynthesis protein MoaC	Shewanella halifaxensis HAW-EB4 Gene: Shal_0124: Molybdenum cofactor biosynthesis protein MoaC	Shewanella piezotolerans WP3 Gene: swp_5007: Molybdenum cofactor biosynthesis protein MoaC	Shewanella sediminis HAW-EB3 Gene: Ssed_4400: Molybdenum cofactor biosynthesis protein MoaC	Shewanella woodyi ATCC 51908 Gene: Swoo_4791: Molybdenum cofactor biosynthesis protein MoaC	Molybdenum cofactor biosynthesis protein MoaC
moaD	Shewanella oneidensis MR-1 Gene: SO_4450: Molybdenum cofactor biosynthesis protein MoaD	Shewanella putrefaciens CN-32 Gene: Sputcn32_0391: Molybdenum cofactor biosynthesis protein MoaD	Shewanella sp W3-18-1 Gene: Sputw3181_0245: Molybdenum cofactor biosynthesis protein MoaD	Shewanella sp ANA-3 Gene: Shewana3_0276: Molybdenum cofactor biosynthesis protein MoaD	Shewanella sp MR-4 Gene: Shewmr4_0275: Molybdenum cofactor biosynthesis protein MoaD	Shewanella sp MR-7 Gene: Shewmr7_3746: Molybdenum cofactor biosynthesis protein MoaD	Shewanella baltica OS155 Gene: Sbal_0286: Molybdenum cofactor biosynthesis protein MoaD	Shewanella denitrificans OS217 Gene: Sden_0103: Molybdenum cofactor biosynthesis protein MoaD	Shewanella frigidimarina NCIMB 400 Gene: Sfri_0084: Molybdenum cofactor biosynthesis protein MoaD	Shewanella amazonensis SB2B Gene: Sama_3527: Molybdenum cofactor biosynthesis protein MoaD	Shewanella loihica PV-4 Gene: Shew_0090: Molybdenum cofactor biosynthesis protein MoaD	Shewanella pealeana ATCC 700345 Gene: Spea_4117: Molybdenum cofactor biosynthesis protein MoaD	Shewanella halifaxensis HAW-EB4 Gene: Shal_0125: Molybdenum cofactor biosynthesis protein MoaD	Shewanella piezotolerans WP3 Gene: swp_5006: Molybdenum cofactor biosynthesis protein MoaD	Shewanella sediminis HAW-EB3 Gene: Ssed_4399: Molybdenum cofactor biosynthesis protein MoaD	Shewanella woodyi ATCC 51908 Gene: Swoo_4790: Molybdenum cofactor biosynthesis protein MoaD	Molybdenum cofactor biosynthesis protein MoaD
moaE	Shewanella oneidensis MR-1 Gene: SO_4449: Molybdenum cofactor biosynthesis protein MoaE	Shewanella putrefaciens CN-32 Gene: Sputcn32_0392: Molybdenum cofactor biosynthesis protein MoaE	Shewanella sp W3-18-1 Gene: Sputw3181_0246: Molybdenum cofactor biosynthesis protein MoaE	Shewanella sp ANA-3 Gene: Shewana3_0277: Molybdenum cofactor biosynthesis protein MoaE	Shewanella sp MR-4 Gene: Shewmr4_0276: Molybdenum cofactor biosynthesis protein MoaE	Shewanella sp MR-7 Gene: Shewmr7_3745: Molybdenum cofactor biosynthesis protein MoaE	Shewanella baltica OS155 Gene: Sbal_0287: Molybdenum cofactor biosynthesis protein MoaE	Shewanella denitrificans OS217 Gene: Sden_0104: Molybdenum cofactor biosynthesis protein MoaE	Shewanella frigidimarina NCIMB 400 Gene: Sfri_0085: Molybdenum cofactor biosynthesis protein MoaE	Shewanella amazonensis SB2B Gene: Sama_3528: Molybdenum cofactor biosynthesis protein MoaE	Shewanella loihica PV-4 Gene: Shew_0091: Molybdenum cofactor biosynthesis protein MoaE	Shewanella pealeana ATCC 700345 Gene: Spea_4116: Molybdenum cofactor biosynthesis protein MoaE	Shewanella halifaxensis HAW-EB4 Gene: Shal_0126: Molybdenum cofactor biosynthesis protein MoaE	Shewanella piezotolerans WP3 Gene: swp_5005: Molybdenum cofactor biosynthesis protein MoaE	Shewanella sediminis HAW-EB3 Gene: Ssed_4398: Molybdenum cofactor biosynthesis protein MoaE	Shewanella woodyi ATCC 51908 Gene: Swoo_4789: Molybdenum cofactor biosynthesis protein MoaE	Molybdenum cofactor biosynthesis protein MoaE
modA	Shewanella oneidensis MR-1 Gene: SO_4448: Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)	Shewanella putrefaciens CN-32 Gene: Sputcn32_0393: Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)	Shewanella sp W3-18-1 Gene: Sputw3181_0247: Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)	Shewanella sp ANA-3 Gene: Shewana3_0278: Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)	Shewanella sp MR-4 Gene: Shewmr4_0277: Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)	Shewanella sp MR-7 Gene: Shewmr7_3744: Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)	Shewanella baltica OS155 Gene: Sbal_0288: Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)	Shewanella denitrificans OS217 Gene: Sden_0105: Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)	Shewanella frigidimarina NCIMB 400 Gene: Sfri_0086: Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)	Shewanella amazonensis SB2B Gene: Sama_3529: Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)	Shewanella loihica PV-4 Gene: Shew_0092: Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)	Shewanella pealeana ATCC 700345 Gene: Spea_4115: Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)	Shewanella halifaxensis HAW-EB4 Gene: Shal_0127: Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)	Shewanella piezotolerans WP3 Gene: swp_5004: Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)	Shewanella sediminis HAW-EB3 Gene: Ssed_4397: Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)	Shewanella woodyi ATCC 51908 Gene: Swoo_4788: Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)	Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
modB	Shewanella oneidensis MR-1 Gene: SO_4447: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)	Shewanella putrefaciens CN-32 Gene: Sputcn32_0394: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)	Shewanella sp W3-18-1 Gene: Sputw3181_0248: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)	Shewanella sp ANA-3 Gene: Shewana3_0279: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)	Shewanella sp MR-4 Gene: Shewmr4_0278: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)	Shewanella sp MR-7 Gene: Shewmr7_3743: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)	Shewanella baltica OS155 Gene: Sbal_0289: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)	Shewanella denitrificans OS217 Gene: Sden_0106: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)	Shewanella frigidimarina NCIMB 400 Gene: Sfri_0087: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)	Shewanella amazonensis SB2B Gene: Sama_3530: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)	Shewanella loihica PV-4 Gene: Shew_0093: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)	Shewanella pealeana ATCC 700345 Gene: Spea_4114: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)	Shewanella halifaxensis HAW-EB4 Gene: Shal_0128: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)	Shewanella piezotolerans WP3 Gene: swp_5002: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)	Shewanella sediminis HAW-EB3 Gene: Ssed_4396: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)	Shewanella woodyi ATCC 51908 Gene: Swoo_4787: Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)	Molybdenum ABC transporter, permease protein (TC 3.A.1.8.1)
modC	Shewanella oneidensis MR-1 Gene: SO_4446: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)	Shewanella putrefaciens CN-32 Gene: Sputcn32_0395: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)	Shewanella sp W3-18-1 Gene: Sputw3181_0249: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)	Shewanella sp ANA-3 Gene: Shewana3_0280: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)	Shewanella sp MR-4 Gene: Shewmr4_0279: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)	Shewanella sp MR-7 Gene: Shewmr7_3742: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)	Shewanella baltica OS155 Gene: Sbal_0290: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)	Shewanella denitrificans OS217 Gene: Sden_0107: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)	Shewanella frigidimarina NCIMB 400 Gene: Sfri_0088: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)	Shewanella amazonensis SB2B Gene: Sama_3531: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)	Shewanella loihica PV-4 Gene: Shew_0094: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)	Shewanella pealeana ATCC 700345 Gene: Spea_4113: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)	Shewanella halifaxensis HAW-EB4 Gene: Shal_0129: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)	Shewanella piezotolerans WP3 Gene: swp_5001: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)	Shewanella sediminis HAW-EB3 Gene: Ssed_4395: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)	Shewanella woodyi ATCC 51908 Gene: Swoo_4786: Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)	Molybdenum ABC transporter, ATP-binding protein (TC 3.A.1.8.1)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog MOCO_RNA_motif - Shewanellaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --