Regulog ArgR - Psychromonadaceae/Aeromonadales
| Regulator type: | Transcription factor |
| Regulator family: | ArgR |
| Regulation mode: | repressor (activator) |
| Biological process: | Arginine degradation; Arginine biosynthesis |
| Effector: | Arginine |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - ArgR
- By taxonomy - Psychromonadaceae/Aeromonadales
- By TF family - ArgR
- By effector - Arginine
- By pathway - Arginine degradation
- By pathway - Arginine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Psychromonas ingrahamii 37 | 14 | 7 |
| Psychromonas sp. CNPT3 | 6 | 4 |
| Moritella sp. PE36 | 12 | 5 |
| Aeromonas hydrophila subsp. hydrophila ATCC 7966 | 17 | 7 |
| Aeromonas salmonicida subsp. salmonicida A449 | 17 | 7 |
| Tolumonas auensis DSM 9187 | 10 | 6 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| argW |
Gene: Ping_1392: Predicted arginine uptake transporter, COG3314 family |
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Psychromonas sp. CNPT3 Site: position = -141 score = 4.66725 sequence = AGTGCATATTTATGCAGA Gene: PCNPT3_05594: Predicted arginine uptake transporter, COG3314 family |
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Predicted arginine uptake transporter, COG3314 family |
| marC |
Gene: Ping_1391: Membrane protein, MarC family |
Gene: PCNPT3_05589: Membrane protein, MarC family |
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Membrane protein, MarC family |
| CRON 2. | |||||||
| argC |
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Psychromonas ingrahamii 37 Site: position = -164 score = 4.11999 sequence = ACTGCTTTAATAAGCTAT Site: position = -92 score = 4.96907 sequence = ATTGCATAAATAATCAAA Gene: Ping_0228: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
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Moritella sp. PE36 Site: position = -200 score = 4.48271 sequence = GTTGCATAAAAATGTAAT Site: position = -221 score = 4.19641 sequence = ATTGTTTTTTTATGCATA Gene: PE36_14821: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
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Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -234 score = 3.86733 sequence = AGAAAATACAAATGCAAA Site: position = -213 score = 4.30334 sequence = AGTGCATGAATATTCTGT Gene: AHA_0593: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
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Aeromonas salmonicida subsp. salmonicida A449 Site: position = -244 score = 3.86733 sequence = AGAAAATACAAATGCAAA Site: position = -223 score = 4.99872 sequence = AGTGCATTAATATTCTTT Gene: ASA_0578: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
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Tolumonas auensis DSM 9187 Site: position = -37 score = 4.10145 sequence = TATGAATTAATCTGAATT Site: position = -189 score = 4.81061 sequence = AATGCATAAATATTAACT Site: position = -210 score = 3.88325 sequence = AAATAATAGAAATGCAAT Gene: Tola_0094: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
| argB |
Gene: Ping_0229: Acetylglutamate kinase (EC 2.7.2.8) |
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Gene: PE36_14816: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: AHA_0594: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: ASA_0579: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: Tola_0095: Acetylglutamate kinase (EC 2.7.2.8) |
Acetylglutamate kinase (EC 2.7.2.8) |
| argF |
Gene: Ping_0230: Ornithine carbamoyltransferase (EC 2.1.3.3) |
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Gene: PE36_14811: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: AHA_0595: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: ASA_0580: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: Tola_0096: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Ornithine carbamoyltransferase (EC 2.1.3.3) |
| argG |
Gene: Ping_0231: Argininosuccinate synthase (EC 6.3.4.5) |
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Psychromonas sp. CNPT3 Site: position = -339 score = 4.50275 sequence = TGTAAATAGTTATTCATT Site: position = -93 score = 4.29325 sequence = TTTGCATGTTTATGCAGT Gene: PCNPT3_02720: Argininosuccinate synthase (EC 6.3.4.5) |
Gene: PE36_14806: Argininosuccinate synthase (EC 6.3.4.5) |
Gene: AHA_0596: Argininosuccinate synthase (EC 6.3.4.5) |
Gene: ASA_0581: Argininosuccinate synthase (EC 6.3.4.5) |
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Tolumonas auensis DSM 9187 Site: position = -265 score = 4.48664 sequence = TATGCATAAATATGCATG Gene: Tola_1484: Argininosuccinate synthase (EC 6.3.4.5) |
Argininosuccinate synthase (EC 6.3.4.5) |
| argH |
Gene: Ping_0232: Argininosuccinate lyase (EC 4.3.2.1) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: PCNPT3_02725: Argininosuccinate lyase (EC 4.3.2.1) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: PE36_14801: Argininosuccinate lyase (EC 4.3.2.1) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: AHA_0597: Argininosuccinate lyase (EC 4.3.2.1) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: ASA_0582: Argininosuccinate lyase (EC 4.3.2.1) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: Tola_0097: Argininosuccinate lyase (EC 4.3.2.1) / N-acetylglutamate synthase (EC 2.3.1.1) |
Argininosuccinate lyase (EC 4.3.2.1) / N-acetylglutamate synthase (EC 2.3.1.1) |
| CRON 3. | |||||||
| argR |
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Psychromonas ingrahamii 37 Site: position = -96 score = 4.92042 sequence = ATTGAATAGTTATGCATT Gene: Ping_0295: Arginine metabolism transcriptional regulator ArgR |
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Psychromonas sp. CNPT3 Site: position = -232 score = 4.19311 sequence = ATGGCATAAATAATCTAA Site: position = -94 score = 3.94489 sequence = AGTGCATACTTATGCACC Site: position = -124 score = 3.97983 sequence = TATGCATCACTTTGCATA Gene: PCNPT3_03561: Arginine metabolism transcriptional regulator ArgR |
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Moritella sp. PE36 Site: position = -253 score = 4.34895 sequence = TCAACATAAATATTCACT Site: position = -163 score = 4.83184 sequence = TATGCATAATTATTCAGT Site: position = -305 score = 4.37745 sequence = ACTGAATATAATTGCACT Gene: PE36_07657: Arginine metabolism transcriptional regulator ArgR |
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Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -88 score = 3.821 sequence = TAGGCATATGAATGCAAA Site: position = -130 score = 4.46543 sequence = TTTGAATCAATATGCAGA Site: position = -193 score = 4.69314 sequence = ATTGAATAAGTTTTCAAA Gene: AHA_0654: Arginine metabolism transcriptional regulator ArgR |
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Aeromonas salmonicida subsp. salmonicida A449 Site: position = -130 score = 4.46543 sequence = TTTGAATCAATATGCAGA Site: position = -193 score = 4.69314 sequence = ATTGAATAAGTTTTCAAA Gene: ASA_0654: Arginine metabolism transcriptional regulator ArgR |
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Tolumonas auensis DSM 9187 Site: position = -90 score = 4.01323 sequence = TTTGAATATCAATTTTTA Gene: Tola_2550: Arginine metabolism transcriptional regulator ArgR |
Arginine metabolism transcriptional regulator ArgR |
| CRON 4. | |||||||
| argE |
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Psychromonas ingrahamii 37 Site: position = -99 score = 4.12332 sequence = ATTACATTAATACTTTCT Gene: Ping_0227: Acetylornithine deacetylase (EC 3.5.1.16) |
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Moritella sp. PE36 Site: position = -60 score = 4.22767 sequence = ATTACATTTTTATGCAAC Site: position = -39 score = 4.20495 sequence = TATGCATAAAAAAACAAT Gene: PE36_14826: Acetylornithine deacetylase (EC 3.5.1.16) |
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Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -52 score = 4.33781 sequence = TTTGCATTTGTATTTTCT Site: position = -73 score = 3.9351 sequence = ACAGAATATTCATGCACT Gene: AHA_0592: Acetylornithine deacetylase (EC 3.5.1.16) |
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Aeromonas salmonicida subsp. salmonicida A449 Site: position = -52 score = 4.33781 sequence = TTTGCATTTGTATTTTCT Site: position = -73 score = 4.44306 sequence = AAAGAATATTAATGCACT Gene: ASA_0577: Acetylornithine deacetylase (EC 3.5.1.16) |
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Tolumonas auensis DSM 9187 Site: position = -72 score = 4.57201 sequence = AGTTAATATTTATGCATT Site: position = -51 score = 4.24687 sequence = ATTGCATTTCTATTATTT Gene: Tola_0093: Acetylornithine deacetylase (EC 3.5.1.16) |
Acetylornithine deacetylase (EC 3.5.1.16) |
| CRON 5. | |||||||
| argA |
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Psychromonas ingrahamii 37 Site: position = -71 score = 4.71562 sequence = ATTAAATATTAATGCATT Gene: Ping_0872: N-acetylglutamate synthase (EC 2.3.1.1) |
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Moritella sp. PE36 Site: position = -410 score = 3.98123 sequence = ATCACATAAAAATTCAGT Gene: PE36_01437: N-acetylglutamate synthase (EC 2.3.1.1) |
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Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -58 score = 4.64389 sequence = TGTGCATTTATTTTCATA Site: position = -79 score = 3.50302 sequence = AATCAATATTTAATCTTG Gene: AHA_2569: N-acetylglutamate synthase (EC 2.3.1.1) |
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Aeromonas salmonicida subsp. salmonicida A449 Site: position = -79 score = 3.87126 sequence = AATCAATATTTAGTCTTT Site: position = -58 score = 4.64389 sequence = TGTGAATTTATTTTCATA Gene: ASA_2577: N-acetylglutamate synthase (EC 2.3.1.1) |
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Tolumonas auensis DSM 9187 Site: position = -98 score = 4.44161 sequence = AATACATAAAAAATCAAA Gene: Tola_2150: N-acetylglutamate synthase (EC 2.3.1.1) |
N-acetylglutamate synthase (EC 2.3.1.1) |
| CRON 6. | |||||||
| carA |
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Psychromonas ingrahamii 37 Site: position = -35 score = 4.52824 sequence = AATAAATTTATTTTTATT Gene: Ping_0896: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: PCNPT3_05359: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: PE36_20979: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
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Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -174 score = 4.84713 sequence = ATTGAATTTAGATGCATT Gene: AHA_2724: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
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Aeromonas salmonicida subsp. salmonicida A449 Site: position = -174 score = 4.84713 sequence = ATTGAATTTAGATGCATT Gene: ASA_1648: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
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Tolumonas auensis DSM 9187 Site: position = -204 score = 4.77757 sequence = TATGCATTATTTTTCATT Site: position = -225 score = 3.60104 sequence = AGTGATATTTTATGCTTA Gene: Tola_1026: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
| carB |
Gene: Ping_0897: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: PCNPT3_05364: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: PE36_20974: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: AHA_2723: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: ASA_1649: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: Tola_1027: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
| CRON 7. | |||||||
| proV |
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Psychromonas ingrahamii 37 Site: position = -377 score = 4.17469 sequence = ATATAATTAATAAGCAAT Gene: Ping_0616: Glycine betaine/L-proline ABC transporter, ATP-binding protein |
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Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -137 score = 3.81032 sequence = AATTAATTATGATTTTCT Site: position = -226 score = 4.66511 sequence = ATTGAATTTGTTTGCATT Gene: AHA_3376: Glycine betaine/L-proline ABC transporter, ATP-binding protein |
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Aeromonas salmonicida subsp. salmonicida A449 Site: position = -145 score = 3.84864 sequence = TTAAAATCAATATGTTAT Gene: ASA_0933: Glycine betaine/L-proline ABC transporter, ATP-binding protein |
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Glycine betaine/L-proline ABC transporter, ATP-binding protein |
| proW |
Gene: Ping_0615: Glycine betaine/L-proline ABC transporter, permease protein |
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Gene: AHA_3375: Glycine betaine/L-proline ABC transporter, permease protein |
Gene: ASA_0934: Glycine betaine/L-proline ABC transporter, permease protein |
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Glycine betaine/L-proline ABC transporter, permease protein |
| proX |
Gene: Ping_0614: Glycine betaine/L-proline ABC transporter, substrate-binding protein |
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Gene: AHA_3374: Glycine betaine/L-proline ABC transporter, substrate-binding protein |
Gene: ASA_0935: Glycine betaine/L-proline ABC transporter, substrate-binding protein |
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Glycine betaine/L-proline ABC transporter, substrate-binding protein |
| CRON 8. | |||||||
| artP |
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Moritella sp. PE36 Site: position = -167 score = 4.84235 sequence = ACTGAATAATTATGCATA Site: position = -77 score = 4.24586 sequence = AGTGAATATTTATGTTGA Site: position = -25 score = 4.16535 sequence = AGTGCAATTATATTCAGT Gene: PE36_07652: Arginine ABC transporter, ATP-binding protein |
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Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -131 score = 3.9584 sequence = TTTGCATTCATATGCCTA Site: position = -89 score = 4.30531 sequence = TCTGCATATTGATTCAAA Site: position = -26 score = 3.99888 sequence = TTTGAAAACTTATTCAAT Gene: AHA_0655: Arginine ABC transporter, ATP-binding protein |
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Aeromonas salmonicida subsp. salmonicida A449 Site: position = -89 score = 4.30531 sequence = TCTGCATATTGATTCAAA Site: position = -26 score = 3.99888 sequence = TTTGAAAACTTATTCAAT Gene: ASA_0655: Arginine ABC transporter, ATP-binding protein |
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Arginine ABC transporter, ATP-binding protein |
| artI |
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Psychromonas ingrahamii 37 Site: position = -130 score = 4.87272 sequence = AATGCATAACTATTCAAT Site: position = -218 score = 4.37753 sequence = ATTGCTTCATTATTTATT Gene: Ping_0296: Arginine ABC transporter, substrate-binding protein |
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Psychromonas sp. CNPT3 Site: position = -286 score = 4.16016 sequence = ATTTATTTTTTATGCAAA Site: position = -306 score = 4.4514 sequence = GGTGCATAAGTATGCACT Gene: PCNPT3_03566: Arginine ABC transporter, substrate-binding protein |
Gene: PE36_07647: Arginine ABC transporter, substrate-binding protein |
Gene: AHA_0656: Arginine ABC transporter, substrate-binding protein |
Gene: ASA_0656: Arginine ABC transporter, substrate-binding protein |
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Arginine ABC transporter, substrate-binding protein |
| artQ |
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Gene: PE36_07642: Arginine ABC transporter, permease protein 1 |
Gene: AHA_0657: Arginine ABC transporter, permease protein 1 |
Gene: ASA_0657: Arginine ABC transporter, permease protein 1 |
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Arginine ABC transporter, permease protein 1 |
| artM |
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Gene: PE36_07637: Arginine ABC transporter, permease protein 2 |
Gene: AHA_0658: Arginine ABC transporter, permease protein 2 |
Gene: ASA_0658: Arginine ABC transporter, permease protein 2 |
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Arginine ABC transporter, permease protein 2 |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |