Regulog ArgR - Alteromonadales
| Regulator type: | Transcription factor |
| Regulator family: | ArgR |
| Regulation mode: | repressor (activator) |
| Biological process: | Arginine biosynthesis; Arginine degradation |
| Effector: | Arginine |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - ArgR
- By taxonomy - Alteromonadales
- By TF family - ArgR
- By effector - Arginine
- By pathway - Arginine biosynthesis
- By pathway - Arginine degradation
| Genome | Genes | Operons |
|---|---|---|
| Pseudoalteromonas atlantica T6c | 11 | 3 |
| Alteromonas macleodii 'Deep ecotype' | 12 | 4 |
| Glaciecola sp. HTCC2999 | 11 | 3 |
| Colwellia psychrerythraea 34H | 14 | 5 |
| Alteromonadales bacterium TW-7 | 12 | 5 |
| Pseudoalteromonas haloplanktis TAC125 | 10 | 4 |
| Pseudoalteromonas tunicata D2 | 12 | 5 |
| Idiomarina baltica OS145 | 9 | 4 |
| Idiomarina loihiensis L2TR | 12 | 5 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| astC |
*2
Pseudoalteromonas atlantica T6c Site: position = -151 score = 4.81997 sequence = ATTAAATACTTATTCACT Site: position = -253 score = 4.34537 sequence = TGTAAATATTCATTCAAG Gene: Patl_0651: Succinylornithine transaminase (EC 2.6.1.81) Gene: Patl_0163: Succinylornithine transaminase (EC 2.6.1.81) |
*
Alteromonas macleodii 'Deep ecotype' Site: position = -238 score = 4.20121 sequence = AGTTAATAGTTATTCACT Gene: MADE_00499: Succinylornithine transaminase (EC 2.6.1.81) |
*
Glaciecola sp. HTCC2999 Site: position = -128 score = 4.33613 sequence = TTTACATACTTATGCGAA Gene: GHTCC_010100002009: Succinylornithine transaminase (EC 2.6.1.81) |
*
Colwellia psychrerythraea 34H Site: position = -298 score = 4.38026 sequence = ATTAATTAATTACTCAAT Site: position = -351 score = 4.17085 sequence = AATAATTAGATATTCATT Gene: CPS_0636: Succinylornithine transaminase (EC 2.6.1.81) |
*2
Alteromonadales bacterium TW-7 Gene: ATW7_03197: Succinylornithine transaminase (EC 2.6.1.81) Site: position = -239 score = 3.78358 sequence = TGCAAATAGTTATTCACT Site: position = -251 score = 3.77081 sequence = TGTGTTTAGGTATGCAAA Gene: ATW7_14971: Succinylornithine transaminase (EC 2.6.1.81) |
*2
Pseudoalteromonas haloplanktis TAC125 Gene: PSHAb0428: Succinylornithine transaminase (EC 2.6.1.81) Site: position = -241 score = 4.06081 sequence = ACCAAATAGTTATTCACT Gene: PSHAa0194: Succinylornithine transaminase (EC 2.6.1.81) |
*2
Pseudoalteromonas tunicata D2 Site: position = -202 score = 4.18238 sequence = CGTAAATACTTATTCATA Site: position = -281 score = 4.28914 sequence = TTGGTATATTAATGCAAT Gene: PTD2_16426: Succinylornithine transaminase (EC 2.6.1.81) Gene: PTD2_02561: Succinylornithine transaminase (EC 2.6.1.81) |
Gene: OS145_08322: Succinylornithine transaminase (EC 2.6.1.81) |
*
Idiomarina loihiensis L2TR Site: position = -173 score = 4.3673 sequence = TTAGCATAACTATTCGTA Gene: IL2318: Succinylornithine transaminase (EC 2.6.1.81) |
Succinylornithine transaminase (EC 2.6.1.81) |
| astA |
2
Pseudoalteromonas atlantica T6c Gene: Patl_0650: Arginine N-succinyltransferase (EC 2.3.1.109) Gene: Patl_0164: Arginine N-succinyltransferase (EC 2.3.1.109) |
Gene: MADE_00498: Arginine N-succinyltransferase (EC 2.3.1.109) |
Gene: GHTCC_010100002004: Arginine N-succinyltransferase (EC 2.3.1.109) |
Gene: CPS_0635: Arginine N-succinyltransferase (EC 2.3.1.109) |
2
Alteromonadales bacterium TW-7 Gene: ATW7_14966: Arginine N-succinyltransferase (EC 2.3.1.109) Gene: ATW7_03192: Arginine N-succinyltransferase (EC 2.3.1.109) |
2
Pseudoalteromonas haloplanktis TAC125 Gene: PSHAb0427: Arginine N-succinyltransferase (EC 2.3.1.109) Gene: PSHAa0195: Arginine N-succinyltransferase (EC 2.3.1.109) |
2
Pseudoalteromonas tunicata D2 Gene: PTD2_16421: Arginine N-succinyltransferase (EC 2.3.1.109) Gene: PTD2_02566: Arginine N-succinyltransferase (EC 2.3.1.109) |
Gene: OS145_08317: Arginine N-succinyltransferase (EC 2.3.1.109) |
Gene: IL2317: Arginine N-succinyltransferase (EC 2.3.1.109) |
Arginine N-succinyltransferase (EC 2.3.1.109) |
| astD |
Gene: Patl_0649: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) |
Gene: MADE_00496: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) |
Gene: GHTCC_010100001999: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) |
Gene: CPS_0634: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) |
2
Alteromonadales bacterium TW-7 Gene: ATW7_03187: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) Gene: ATW7_14961: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) |
2
Pseudoalteromonas haloplanktis TAC125 Gene: PSHAb0426: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) Gene: PSHAa0196: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) |
2
Pseudoalteromonas tunicata D2 Gene: PTD2_16416: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) Gene: PTD2_02571: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) |
Gene: OS145_08312: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) |
Gene: IL2316: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) |
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) |
| astE |
Gene: Patl_2195: Succinylglutamate desuccinylase (EC 3.5.1.96) |
Gene: MADE_02550: Succinylglutamate desuccinylase (EC 3.5.1.96) |
Gene: GHTCC_010100010205: Succinylglutamate desuccinylase (EC 3.5.1.96) |
Gene: CPS_0633: Succinylglutamate desuccinylase (EC 3.5.1.96) |
Gene: ATW7_13258: Succinylglutamate desuccinylase (EC 3.5.1.96) |
Gene: PSHAa1633: Succinylglutamate desuccinylase (EC 3.5.1.96) |
Gene: PTD2_19355: Succinylglutamate desuccinylase (EC 3.5.1.96) |
Gene: OS145_01877: Succinylglutamate desuccinylase (EC 3.5.1.96) |
Gene: IL1681: Succinylglutamate desuccinylase (EC 3.5.1.96) |
Succinylglutamate desuccinylase (EC 3.5.1.96) |
| CRON 2. | ||||||||||
| argC |
*
Pseudoalteromonas atlantica T6c Site: position = -310 score = 4.70829 sequence = TTTGCATAAATATATAAC Site: position = -331 score = 5.13911 sequence = TTTAAATAATTATTCATT Gene: Patl_0982: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Alteromonas macleodii 'Deep ecotype' Site: position = -343 score = 4.36774 sequence = ATAAAATATTTATACATT Site: position = -322 score = 5.12911 sequence = ATTGCATAAACATTCAAA Gene: MADE_00532: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Glaciecola sp. HTCC2999 Site: position = -259 score = 4.96024 sequence = AATGAATATTTATACATT Site: position = -238 score = 4.2871 sequence = TTTGCATAAATATTATAT Gene: GHTCC_010100002119: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Colwellia psychrerythraea 34H Site: position = -108 score = 4.69035 sequence = ATTGAATATTTACTTAAA Gene: CPS_0460: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Alteromonadales bacterium TW-7 Site: position = -213 score = 4.48737 sequence = CCAAAATAACTATTCAAT Site: position = -192 score = 4.70102 sequence = ATTGCATAACAATATAAA Site: position = -165 score = 4.60323 sequence = GATGAATATCAATTCACT Gene: ATW7_10718: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Pseudoalteromonas haloplanktis TAC125 Site: position = -148 score = 4.08933 sequence = TAAGCATAAATATTTTAA Site: position = -169 score = 4.60323 sequence = GATGAATATCAATTCACT Site: position = -196 score = 4.70102 sequence = ATTGCATAACAATATAAA Gene: PSHAa2291: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Pseudoalteromonas tunicata D2 Site: position = -177 score = 4.451 sequence = CAAAAATAATTATGCAAT Site: position = -156 score = 5.12617 sequence = ATTGCATATTAATTTAAT Gene: PTD2_13824: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Idiomarina baltica OS145 Site: position = -68 score = 4.33434 sequence = TAAATATATTTATTCAGT Site: position = -47 score = 4.5222 sequence = TCTGCATACAAATTCAGC Gene: OS145_04073: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
*
Idiomarina loihiensis L2TR Site: position = -88 score = 4.48434 sequence = TTAATATAATTATTCACT Site: position = -61 score = 4.2741 sequence = TAAGTATATTTATTCGGT Site: position = -40 score = 4.26242 sequence = TCTGCATTTTTACTCAGA Gene: IL0612: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
| argB |
Gene: Patl_0981: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: MADE_00531: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: GHTCC_010100002114: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: CPS_0461: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: ATW7_10713: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: PSHAa2290: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: PTD2_13819: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: OS145_04068: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: IL0613: Acetylglutamate kinase (EC 2.7.2.8) |
Acetylglutamate kinase (EC 2.7.2.8) |
| argF |
Gene: Patl_0980: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: MADE_00530: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: GHTCC_010100002109: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: CPS_0462: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: ATW7_10708: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: PSHAa2289: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: PTD2_13814: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: OS145_04063: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: IL0614: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Ornithine carbamoyltransferase (EC 2.1.3.3) |
| argG |
Gene: Patl_0979: Argininosuccinate synthase (EC 6.3.4.5) |
Gene: MADE_00529: Argininosuccinate synthase (EC 6.3.4.5) |
Gene: GHTCC_010100002104: Argininosuccinate synthase (EC 6.3.4.5) |
Gene: CPS_0463: Argininosuccinate synthase (EC 6.3.4.5) |
Gene: ATW7_10703: Argininosuccinate synthase (EC 6.3.4.5) |
Gene: PSHAa2288: Argininosuccinate synthase (EC 6.3.4.5) |
Gene: PTD2_13809: Argininosuccinate synthase (EC 6.3.4.5) |
Gene: OS145_04058: Argininosuccinate synthase (EC 6.3.4.5) |
Gene: IL0615: Argininosuccinate synthase (EC 6.3.4.5) |
Argininosuccinate synthase (EC 6.3.4.5) |
| argH |
Gene: Patl_0978: Argininosuccinate lyase (EC 4.3.2.1) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: MADE_00528: Argininosuccinate lyase (EC 4.3.2.1) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: GHTCC_010100002099: Argininosuccinate lyase (EC 4.3.2.1) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: CPS_0464: Argininosuccinate lyase (EC 4.3.2.1) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: ATW7_10698: Argininosuccinate lyase (EC 4.3.2.1) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: PSHAa2287: Argininosuccinate lyase (EC 4.3.2.1) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: PTD2_13804: Argininosuccinate lyase (EC 4.3.2.1) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: OS145_04053: Argininosuccinate lyase (EC 4.3.2.1) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: IL0616: Argininosuccinate lyase (EC 4.3.2.1) / N-acetylglutamate synthase (EC 2.3.1.1) |
Argininosuccinate lyase (EC 4.3.2.1) / N-acetylglutamate synthase (EC 2.3.1.1) |
| argA |
Gene: Patl_0977: N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: MADE_00527: N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: GHTCC_010100002094: N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: CPS_0465: N-acetylglutamate synthase (EC 2.3.1.1) |
|
|
|
|
|
N-acetylglutamate synthase (EC 2.3.1.1) |
| CRON 3. | ||||||||||
| argE |
|
|
|
*
Colwellia psychrerythraea 34H Site: position = -31 score = 4.67035 sequence = TTTAAGTAAATATTCAAT Site: position = -43 score = 4.3989 sequence = TCAGCATAAGTATTTAAG Gene: CPS_0459: Acetylornithine deacetylase (EC 3.5.1.16) |
*
Alteromonadales bacterium TW-7 Site: position = -47 score = 4.40607 sequence = TTTATATTGTTATGCAAT Site: position = -74 score = 4.31565 sequence = AGTGAATTGATATTCATC Site: position = -26 score = 4.19709 sequence = ATTGAATAGTTATTTTGG Gene: ATW7_10723: Acetylornithine deacetylase (EC 3.5.1.16) |
*
Pseudoalteromonas haloplanktis TAC125 Site: position = -46 score = 4.40607 sequence = TTTATATTGTTATGCAAT Site: position = -73 score = 4.31565 sequence = AGTGAATTGATATTCATC Site: position = -94 score = 3.76809 sequence = TTAAAATATTTATGCTTA Gene: PSHAa2292: Acetylornithine deacetylase (EC 3.5.1.16) |
*
Pseudoalteromonas tunicata D2 Site: position = -26 score = 4.50488 sequence = ATTGCATAATTATTTTTG Site: position = -47 score = 4.99429 sequence = ATTAAATTAATATGCAAT Gene: PTD2_13829: Acetylornithine deacetylase (EC 3.5.1.16) |
*
Idiomarina baltica OS145 Site: position = -36 score = 4.10241 sequence = TAAATATATTTATGCAAC Site: position = -42 score = 4.15202 sequence = ACTGAATAAATATATTTA Site: position = -63 score = 4.22183 sequence = GCTGAATTTGTATGCAGA Gene: OS145_04078: Acetylornithine deacetylase (EC 3.5.1.16) |
*
Idiomarina loihiensis L2TR Site: position = -29 score = 4.1987 sequence = AGTGAATAATTATATTAA Site: position = -50 score = 4.18192 sequence = TAAATATACTTATGCAAT Site: position = -77 score = 4.25291 sequence = TCTGAGTAAAAATGCAGA Gene: IL0611: Acetylornithine deacetylase (EC 3.5.1.16) |
Acetylornithine deacetylase (EC 3.5.1.16) |
| CRON 4. | ||||||||||
| argR |
Gene: Patl_0538: Arginine metabolism transcriptional regulator ArgR |
*
Alteromonas macleodii 'Deep ecotype' Site: position = -109 score = 4.55604 sequence = CATGAATGATTATGCAAA Gene: MADE_00735: Arginine metabolism transcriptional regulator ArgR |
Gene: GHTCC_010100007107: Arginine metabolism transcriptional regulator ArgR |
*2
Colwellia psychrerythraea 34H Site: position = -76 score = 5.41173 sequence = ATTGAATAAATATTCACT Gene: CPS_0697: Arginine metabolism transcriptional regulator ArgR Gene: CPS_4515: Arginine metabolism transcriptional regulator ArgR |
*
Alteromonadales bacterium TW-7 Site: position = -63 score = 5.07374 sequence = GCTGCATAATTATTCATT Gene: ATW7_12338: Arginine metabolism transcriptional regulator ArgR |
*
Pseudoalteromonas haloplanktis TAC125 Site: position = -37 score = 4.72452 sequence = GCTGCATAATTATTCGTT Gene: PSHAa2659: Arginine metabolism transcriptional regulator ArgR |
*2
Pseudoalteromonas tunicata D2 Gene: PTD2_02901: Arginine metabolism transcriptional regulator ArgR Site: position = -126 score = 4.7406 sequence = ACTGCATAAACATGCACT Gene: PTD2_08504: Arginine metabolism transcriptional regulator ArgR |
*
Idiomarina baltica OS145 Site: position = -81 score = 4.13631 sequence = ATAGAATAGTTATGCGGA Gene: OS145_05015: Arginine metabolism transcriptional regulator ArgR |
*
Idiomarina loihiensis L2TR Site: position = -115 score = 4.28202 sequence = TATCAATAAAAATACAAC Site: position = -157 score = 4.33984 sequence = ACTGCTTAAAAATGCAGG Gene: IL0471: Arginine metabolism transcriptional regulator ArgR |
Arginine metabolism transcriptional regulator ArgR |
| CRON 5. | ||||||||||
| gltB |
*
Pseudoalteromonas atlantica T6c Site: position = -186 score = 4.67855 sequence = TTAGTATAAATATTCGAT Gene: Patl_3748: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) |
*
Alteromonas macleodii 'Deep ecotype' Site: position = -269 score = 4.58401 sequence = AATGCATAAAAATGCGGA Gene: MADE_01631: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) |
*
Glaciecola sp. HTCC2999 Site: position = -310 score = 4.8291 sequence = ATTGCATAAAAATTCTAA Gene: GHTCC_010100000995: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) |
*
Colwellia psychrerythraea 34H Site: position = -194 score = 4.28611 sequence = ATTCAATTAATACTCAGT Gene: CPS_4501: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) |
*
Alteromonadales bacterium TW-7 Site: position = -119 score = 4.84753 sequence = TGTGAATATGTATTCAAA Site: position = -304 score = 5.29901 sequence = ATTGAATATTTATTCACT Gene: ATW7_06903: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) |
|
*
Pseudoalteromonas tunicata D2 Site: position = -325 score = 4.89967 sequence = TGTGAATAAATATTCACA Site: position = -138 score = 4.79858 sequence = CATGAATATGTATTCAAA Gene: PTD2_10749: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) |
*
Idiomarina baltica OS145 Site: position = -142 score = 4.77882 sequence = ACTGAATAACTATTCGTG Site: position = -163 score = 4.07012 sequence = CCTGCATGATAATGTAGT Gene: OS145_11374: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) |
*
Idiomarina loihiensis L2TR Site: position = -28 score = 5.19209 sequence = ATTGAATAATTATTCGAG Gene: IL1075: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) |
Glutamate synthase [NADPH] large chain (EC 1.4.1.13) |
| gltD |
Gene: Patl_3749: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
Gene: MADE_01630: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
Gene: GHTCC_010100001000: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
Gene: CPS_4502: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
Gene: ATW7_06908: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
|
Gene: PTD2_10744: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
Gene: OS145_11379: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
Gene: IL1074: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |