Regulog Lysine - Bacillales
| Regulator type: | RNA regulatory element |
| Name: | Lysine |
| RFAM: | RF00168 |
| Regulation mode: | |
| Biological process: | Lysine biosynthesis |
| Effector: | Lysine |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Bacillales
- By RNA motif - Lysine
- By effector - Lysine
- By pathway - Lysine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 2 | 2 |
| Bacillus amyloliquefaciens FZB42 | 2 | 2 |
| Bacillus pumilus SAFR-032 | 2 | 2 |
| Bacillus licheniformis DSM 13 | 2 | 2 |
| Anoxybacillus flavithermus WK1 | 1 | 1 |
| Geobacillus kaustophilus HTA426 | 1 | 1 |
| Bacillus cereus ATCC 14579 | 4 | 4 |
| Bacillus halodurans C-125 | 4 | 4 |
| Bacillus clausii KSM-K16 | 2 | 2 |
| Oceanobacillus iheyensis HTE831 | 2 | 2 |
| Paenibacillus sp. JDR-2 | 1 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| yvsH |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -284 score = 114.36 sequence = TCAGTGAGGTAGAGG... Gene: BSU33330: Putative lysine permease |
*
Bacillus amyloliquefaciens FZB42 Site: position = -292 score = 107.63 sequence = TCGGTGAGGTAGAGG... Gene: RBAM_030450: Putative lysine permease |
*
Bacillus pumilus SAFR-032 Site: position = -369 score = 115.71 sequence = TCAGTGAGGTAGAGG... Gene: BPUM_2995: Putative lysine permease |
*
Bacillus licheniformis DSM 13 Site: position = -292 score = 138.26 sequence = TTAGTGAGGTAGAGG... Gene: BLi03522: Putative lysine permease |
*
Anoxybacillus flavithermus WK1 Site: position = -227 score = 128.65 sequence = GATGAGATAGAGGTC... Gene: Aflv_1989: Putative lysine permease |
*
Geobacillus kaustophilus HTA426 Site: position = -272 score = 112.37 sequence = TTAATGGGATAGAGG... Gene: GK0962: Putative lysine permease |
*
Bacillus cereus ATCC 14579 Site: position = -330 score = 128.31 sequence = TCGGTGAGGTAGAGG... Gene: BC0865: Putative lysine permease |
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Putative lysine permease |
| CRON 2. | ||||||||||||
| lysC |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -306 score = 137.53 sequence = TGGTGAAGATAGAGG... Gene: BSU28470: Aspartokinase (EC 2.7.2.4) |
*
Bacillus amyloliquefaciens FZB42 Site: position = -306 score = 138.88 sequence = TGGTGAAGATAGAGG... Gene: RBAM_025540: Aspartokinase (EC 2.7.2.4) |
*
Bacillus pumilus SAFR-032 Site: position = -319 score = 137.14 sequence = TGTTGAAGATAGAGG... Gene: BPUM_2505: Aspartokinase (EC 2.7.2.4) |
*
Bacillus licheniformis DSM 13 Site: position = -330 score = 136.24 sequence = TGGTGAAGATAGAGG... Gene: BLi02996: Aspartokinase (EC 2.7.2.4) |
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|
*
Bacillus cereus ATCC 14579 Site: position = -390 score = 126.23 sequence = AACGTGAGATAGAGG... Gene: BC1748: Aspartokinase (EC 2.7.2.4) |
*
Bacillus halodurans C-125 Site: position = -317 score = 116.42 sequence = AAGTGATGGTAGAGG... Gene: BH3096: Aspartokinase (EC 2.7.2.4) |
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Gene: Pjdr2_2289: Aspartokinase (EC 2.7.2.4) |
Aspartokinase (EC 2.7.2.4) |
| CRON 3. | ||||||||||||
| lysW |
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*
Bacillus halodurans C-125 Site: position = -322 score = 126.98 sequence = AAGATGGGGTAGAGG... Gene: BH3449: Predicted lysine transporter, NhaC family |
*
Bacillus clausii KSM-K16 Site: position = -264 score = 114.0 sequence = CAGATGGGGTAGAGG... Gene: ABC2952: Predicted lysine transporter, NhaC family |
*
Oceanobacillus iheyensis HTE831 Site: position = -324 score = 111.22 sequence = TCGGTGAGGTAGAGG... Gene: OB2369: Predicted lysine transporter, NhaC family |
|
Predicted lysine transporter, NhaC family |
| CRON 4. | ||||||||||||
| lysA |
Gene: BSU23380: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Gene: RBAM_021480: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Gene: BPUM_2068: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Gene: BLi02486: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Gene: Aflv_1012: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Gene: GK2300: Diaminopimelate decarboxylase (EC 4.1.1.20) |
*
Bacillus cereus ATCC 14579 Site: position = -361 score = 120.46 sequence = TCAAAGGTAGAGGCC... Gene: BC1419: Diaminopimelate decarboxylase (EC 4.1.1.20) |
*
Bacillus halodurans C-125 Site: position = -295 score = 121.7 sequence = GATGAGGTAGAGGTG... Gene: BH1544: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Gene: ABC1801: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Gene: OB1833: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Gene: Pjdr2_2347: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Diaminopimelate decarboxylase (EC 4.1.1.20) |
| CRON 5. | ||||||||||||
| lysP |
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*
Bacillus cereus ATCC 14579 Site: position = -295 score = 121.41 sequence = GATGAGGTAGAGGTT... Gene: BC3052: Lysine-specific permease |
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*
Paenibacillus sp. JDR-2 Site: position = -317 score = 99.4 sequence = GATGAGGTAGAGGTC... Gene: Pjdr2_2916: Lysine-specific permease |
Lysine-specific permease |
| CRON 6. | ||||||||||||
| dapA |
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*
Bacillus halodurans C-125 Site: position = -355 score = 127.95 sequence = AAGTGAGGATAGAGG... Gene: BH1742: Dihydrodipicolinate synthase (EC 4.2.1.52) |
*
Bacillus clausii KSM-K16 Site: position = -270 score = 96.67 sequence = GTGAGAGTAGAGGCG... Gene: ABC2030: Dihydrodipicolinate synthase (EC 4.2.1.52) |
*
Oceanobacillus iheyensis HTE831 Site: position = -285 score = 107.21 sequence = TTTTGGATAGAGGTG... Gene: OB1708: Dihydrodipicolinate synthase (EC 4.2.1.52) |
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Dihydrodipicolinate synthase (EC 4.2.1.52) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |