Regulog Lysine - Staphylococcaceae
| Regulator type: | RNA regulatory element |
| Name: | Lysine |
| RFAM: | RF00168 |
| Regulation mode: | |
| Biological process: | Lysine biosynthesis |
| Effector: | Lysine |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Staphylococcaceae
- By RNA motif - Lysine
- By effector - Lysine
- By pathway - Lysine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Staphylococcus aureus subsp. aureus N315 | 9 | 2 |
| Staphylococcus capitis SK14 | 9 | 2 |
| Staphylococcus epidermidis ATCC 12228 | 9 | 2 |
| Staphylococcus carnosus subsp. carnosus TM300 | 9 | 2 |
| Staphylococcus haemolyticus JCSC1435 | 9 | 2 |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | 9 | 2 |
| Macrococcus caseolyticus JCSC5402 | 9 | 2 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| lysC |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -256 score = 87.03 sequence = TATTTTGATGAGGCG... Gene: SA1225: Aspartokinase (EC 2.7.2.4) |
*
Staphylococcus capitis SK14 Site: position = -261 score = 92.6 sequence = GATTTTGATGAGGAG... Gene: STACA0001_1639: Aspartokinase (EC 2.7.2.4) |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -232 score = 98.39 sequence = GATTTTGATGAGGCG... Gene: SE1073: Aspartokinase (EC 2.7.2.4) |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -261 score = 98.14 sequence = TATTTTGATGAGGCG... Gene: Sca_1037: Aspartokinase (EC 2.7.2.4) |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -259 score = 103.18 sequence = AAGAAATTGATGAGG... Gene: SH1518: Aspartokinase (EC 2.7.2.4) |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -262 score = 99.65 sequence = AAGGTTTTGATGAGG... Gene: SSP1357: Aspartokinase (EC 2.7.2.4) |
*
Macrococcus caseolyticus JCSC5402 Site: position = -244 score = 88.74 sequence = GAAACAGATGAGGCG... Gene: MCCL_1048: Aspartokinase (EC 2.7.2.4) |
Aspartokinase (EC 2.7.2.4) |
| asd |
Gene: SA1226: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
Gene: STACA0001_1640: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
Gene: SE1074: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
Gene: Sca_1038: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
Gene: SH1517: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
Gene: SSP1356: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
Gene: MCCL_1049: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
| dapA |
Gene: SA1227: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: STACA0001_1641: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: SE1075: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: Sca_1039: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: SH1516: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: SSP1355: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: MCCL_1050: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Dihydrodipicolinate synthase (EC 4.2.1.52) |
| dapB |
Gene: SA1228: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: STACA0001_1642: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: SE1076: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: Sca_1040: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: SH1515: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: SSP1354: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: MCCL_1051: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Dihydrodipicolinate reductase (EC 1.3.1.26) |
| dapD |
Gene: SA1229: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
Gene: STACA0001_1643: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
Gene: SE1077: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
Gene: Sca_1041: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
Gene: SH1514: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
Gene: SSP1353: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
Gene: MCCL_1052: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
| dapL |
Gene: SA1230: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
Gene: STACA0001_1644: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
Gene: SE1078: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
Gene: Sca_1042: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
Gene: SH1513: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
Gene: SSP1352: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
Gene: MCCL_1053: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
| dapX |
Gene: SA1231: Diaminopimelate epimerase alternative form predicted for S.aureus (EC 5.1.1.7) |
Gene: STACA0001_1645: Diaminopimelate epimerase alternative form predicted for S.aureus (EC 5.1.1.7) |
Gene: SE1079: Diaminopimelate epimerase alternative form predicted for S.aureus (EC 5.1.1.7) |
Gene: Sca_1043: Diaminopimelate epimerase alternative form predicted for S.aureus (EC 5.1.1.7) |
Gene: SH1512: Diaminopimelate epimerase alternative form predicted for S.aureus (EC 5.1.1.7) |
Gene: SSP1351: Diaminopimelate epimerase alternative form predicted for S.aureus (EC 5.1.1.7) |
Gene: MCCL_1054: Diaminopimelate epimerase alternative form predicted for S.aureus (EC 5.1.1.7) |
Diaminopimelate epimerase alternative form predicted for S.aureus (EC 5.1.1.7) |
| lysA |
Gene: SA1232: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Gene: STACA0001_1646: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Gene: SE1080: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Gene: Sca_1044: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Gene: SH1511: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Gene: SSP1350: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Gene: MCCL_1055: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Diaminopimelate decarboxylase (EC 4.1.1.20) |
| CRON 2. | ||||||||
| lysP |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -321 score = 112.83 sequence = AAATTGAGTTAGAGG... Gene: SA1505: Lysine-specific permease |
*
Staphylococcus capitis SK14 Site: position = -395 score = 113.15 sequence = TTAGAGTTAGAGGTT... Gene: STACA0001_2345: Lysine-specific permease |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -382 score = 111.56 sequence = AAATAGAGTTAGAGG... Gene: SE1356: Lysine-specific permease |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -269 score = 105.87 sequence = AAAAAGTGTTAGAGG... Gene: Sca_1287: Lysine-specific permease |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -334 score = 112.62 sequence = AAAGAGTTAGAGGTT... Gene: SH1244: Lysine-specific permease |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -383 score = 103.84 sequence = TTTGAGTTAGAGGTT... Gene: SSP1083: Lysine-specific permease |
*
Macrococcus caseolyticus JCSC5402 Site: position = -171 score = 101.62 sequence = TCGTTGAGGTAGAGG... Site: position = -171 score = 101.62 sequence = TCGTTGAGGTAGAGG... Gene: MCCL_1346: Lysine-specific permease |
Lysine-specific permease |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |