Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog GbsR (YuaC) - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: MarR
Regulation mode: repressor
Biological process: Glycine betaine synthesis
Effector: Choline
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 5 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Anoxybacillus flavithermus WK1
Bacillus amyloliquefaciens FZB42 2 1
Bacillus cereus ATCC 14579
Bacillus clausii KSM-K16 2 1
Bacillus halodurans C-125
Bacillus licheniformis DSM 13 2 1
Bacillus pumilus SAFR-032 2 1
Bacillus subtilis subsp. subtilis str. 168 2 1
Geobacillus kaustophilus HTA426
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
gbsA
 
Anoxybacillus flavithermus WK1
*
Bacillus amyloliquefaciens FZB42

Site:
position = -47
score = 6.20369
sequence = ATTAAATTTTTATTTAAC

Gene: RBAM_028160: Betaine aldehyde dehydrogenase (EC 1.2.1.8)
 
Bacillus cereus ATCC 14579
*
Bacillus clausii KSM-K16

Site:
position = -38
score = 5.31906
sequence = GTTTAATATATATTAAAC

Gene: ABC0980: Betaine aldehyde dehydrogenase (EC 1.2.1.8)
 
Bacillus halodurans C-125
*
Bacillus licheniformis DSM 13

Site:
position = -47
score = 6.20369
sequence = ATTAAATTTTTATTTAAC

Gene: BLi03270: Betaine aldehyde dehydrogenase (EC 1.2.1.8)
*
Bacillus pumilus SAFR-032

Site:
position = -53
score = 6.37625
sequence = GTTAAATTTTTATTTAAC

Gene: BPUM_2735: Betaine aldehyde dehydrogenase (EC 1.2.1.8)
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -46
score = 6.20369
sequence = ATTAAATTTTTATTTAAC

Gene: BSU31060: Betaine aldehyde dehydrogenase (EC 1.2.1.8)
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Betaine aldehyde dehydrogenase (EC 1.2.1.8)
gbsB
 
Anoxybacillus flavithermus WK1
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_028150: Choline dehydrogenase
 
Bacillus cereus ATCC 14579
 
Bacillus clausii KSM-K16

Gene: ABC0979: Choline dehydrogenase
 
Bacillus halodurans C-125
 
Bacillus licheniformis DSM 13

Gene: BLi03269: Choline dehydrogenase
 
Bacillus pumilus SAFR-032

Gene: BPUM_2734: Choline dehydrogenase
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU31050: Choline dehydrogenase
 
Geobacillus kaustophilus HTA426
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Choline dehydrogenase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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