Regulog YcnK - Bacillales

Properties
Regulator type:	Transcription factor
Regulator family:	DeoR
Regulation mode:	repressor
Biological process:	Copper homeostasis
Effector:	Copper ion, (Cu+)
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 5 sites [see more]

Member of regulog collections

By taxonomy - Bacillales
By TF family - DeoR
By effector - Copper ion, (Cu+)
By pathway - Copper homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Bacillus subtilis subsp. subtilis str. 168	3	1
Bacillus amyloliquefaciens FZB42	3	1
Bacillus pumilus SAFR-032
Bacillus licheniformis DSM 13	3	1
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579
Bacillus halodurans C-125
Bacillus clausii KSM-K16
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
ycnK	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -90 score = 8.75748 sequence = CACATTTT-(0)-CACATTTT Gene: BSU03960: Transcriptional regulator of copper import, DeoR family	* Bacillus amyloliquefaciens FZB42 Site: position = -110 score = 7.52164 sequence = AACATTTT-(2)-CACATATT Site: position = -108 score = 8.19182 sequence = CATTTTTT-(2)-CATATTTT Gene: RBAM_004210: Transcriptional regulator of copper import, DeoR family	Bacillus pumilus SAFR-032	* Bacillus licheniformis DSM 13 Site: position = -95 score = 7.00092 sequence = AACATTTC-(2)-CACATTTT Site: position = -93 score = 7.60178 sequence = CATTTCAT-(0)-CACATTTT Gene: BLi00481: Transcriptional regulator of copper import, DeoR family	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Transcriptional regulator of copper import, DeoR family
ycnJ	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU03950: Putative copper import protein	Bacillus amyloliquefaciens FZB42 Gene: RBAM_004200: Putative copper import protein	Bacillus pumilus SAFR-032 Gene: BPUM_0368: Putative copper import protein	Bacillus licheniformis DSM 13 Gene: BLi00480: Putative copper import protein	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579 Gene: BC1838: Putative copper import protein	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_5844: Putative copper import protein	Putative copper import protein
ycnI	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU03940: Hypothetical Membrane Associated Protein	Bacillus amyloliquefaciens FZB42 Gene: RBAM_004190: Hypothetical Membrane Associated Protein	Bacillus pumilus SAFR-032 Gene: BPUM_0367: Hypothetical Membrane Associated Protein	Bacillus licheniformis DSM 13 Gene: BLi00479: Hypothetical Membrane Associated Protein	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579 Gene: BC1839: Hypothetical Membrane Associated Protein	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_5843: Hypothetical Membrane Associated Protein	Hypothetical Membrane Associated Protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YcnK - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --