Regulog YcnK - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | DeoR |
| Regulation mode: | repressor |
| Biological process: | Copper homeostasis |
| Effector: | Copper ion, (Cu+) |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - DeoR
- By effector - Copper ion, (Cu+)
- By pathway - Copper homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 3 | 1 |
| Bacillus amyloliquefaciens FZB42 | 3 | 1 |
| Bacillus pumilus SAFR-032 | ||
| Bacillus licheniformis DSM 13 | 3 | 1 |
| Anoxybacillus flavithermus WK1 | ||
| Geobacillus kaustophilus HTA426 | ||
| Bacillus cereus ATCC 14579 | ||
| Bacillus halodurans C-125 | ||
| Bacillus clausii KSM-K16 | ||
| Oceanobacillus iheyensis HTE831 | ||
| Paenibacillus sp. JDR-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| ycnK |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -90 score = 8.75748 sequence = CACATTTT-(0)-CACATTTT Gene: BSU03960: Transcriptional regulator of copper import, DeoR family |
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Bacillus amyloliquefaciens FZB42 Site: position = -110 score = 7.52164 sequence = AACATTTT-(2)-CACATATT Site: position = -108 score = 8.19182 sequence = CATTTTTT-(2)-CATATTTT Gene: RBAM_004210: Transcriptional regulator of copper import, DeoR family |
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Bacillus licheniformis DSM 13 Site: position = -95 score = 7.00092 sequence = AACATTTC-(2)-CACATTTT Site: position = -93 score = 7.60178 sequence = CATTTCAT-(0)-CACATTTT Gene: BLi00481: Transcriptional regulator of copper import, DeoR family |
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Transcriptional regulator of copper import, DeoR family |
| ycnJ |
Gene: BSU03950: Putative copper import protein |
Gene: RBAM_004200: Putative copper import protein |
Gene: BPUM_0368: Putative copper import protein |
Gene: BLi00480: Putative copper import protein |
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Gene: BC1838: Putative copper import protein |
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Gene: Pjdr2_5844: Putative copper import protein |
Putative copper import protein |
| ycnI |
Gene: BSU03940: Hypothetical Membrane Associated Protein |
Gene: RBAM_004190: Hypothetical Membrane Associated Protein |
Gene: BPUM_0367: Hypothetical Membrane Associated Protein |
Gene: BLi00479: Hypothetical Membrane Associated Protein |
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Gene: BC1839: Hypothetical Membrane Associated Protein |
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Gene: Pjdr2_5843: Hypothetical Membrane Associated Protein |
Hypothetical Membrane Associated Protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |