Regulog RhaR - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | DeoR |
| Regulation mode: | repressor |
| Biological process: | Rhamnose utilization |
| Effector: | Rhamnulose-1-phosphate |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - DeoR
- By effector - Rhamnulose-1-phosphate
- By pathway - Rhamnose utilization
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 5 | 1 |
| Bacillus amyloliquefaciens FZB42 | ||
| Bacillus pumilus SAFR-032 | ||
| Bacillus licheniformis DSM 13 | 5 | 1 |
| Anoxybacillus flavithermus WK1 | ||
| Geobacillus kaustophilus HTA426 | ||
| Bacillus cereus ATCC 14579 | ||
| Bacillus halodurans C-125 | 4 | 1 |
| Bacillus clausii KSM-K16 | ||
| Oceanobacillus iheyensis HTE831 | 6 | 1 |
| Paenibacillus sp. JDR-2 | 4 | 2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| rhaM |
Gene: BSU31190: L-rhamnose mutarotase |
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Gene: BH0806: L-rhamnose mutarotase |
Gene: ABC0376: L-rhamnose mutarotase |
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Oceanobacillus iheyensis HTE831 Site: position = -122 score = 3.94897 sequence = CAAAAAATAACAAAAATAA Gene: OB0493: L-rhamnose mutarotase |
Gene: Pjdr2_2754: L-rhamnose mutarotase |
L-rhamnose mutarotase |
| rhaY |
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Gene: BLi00639: Predicted L-rhamnose permease RhaY |
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Gene: ABC0377: Predicted L-rhamnose permease RhaY |
Gene: OB0494: Predicted L-rhamnose permease RhaY |
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Predicted L-rhamnose permease RhaY |
| rhaB |
Gene: BSU31200: Rhamnulokinase (EC 2.7.1.5) |
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Gene: BLi03558: Rhamnulokinase (EC 2.7.1.5) |
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Gene: BH1551: Rhamnulokinase (EC 2.7.1.5) |
Gene: ABC0374: Rhamnulokinase (EC 2.7.1.5) |
Gene: OB0495: Rhamnulokinase (EC 2.7.1.5) |
Gene: Pjdr2_3538: Rhamnulokinase (EC 2.7.1.5) |
Rhamnulokinase (EC 2.7.1.5) |
| rhaA |
Gene: BSU31180: L-rhamnose isomerase (EC 5.3.1.14) |
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Gene: BH1552: L-rhamnose isomerase (EC 5.3.1.14) |
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Gene: OB0496: L-rhamnose isomerase (EC 5.3.1.14) |
Gene: Pjdr2_3539: L-rhamnose isomerase (EC 5.3.1.14) |
L-rhamnose isomerase (EC 5.3.1.14) |
| rhaD |
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Gene: OB0497: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) |
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Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) |
| rhaR |
Gene: BSU31210: Transcriptional regulator of rhamnose utilization, DeoR family |
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Gene: BLi03557: Transcriptional regulator of rhamnose utilization, DeoR family |
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Gene: BH1553: Transcriptional regulator of rhamnose utilization, DeoR family |
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Gene: OB0498: Transcriptional regulator of rhamnose utilization, DeoR family |
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Paenibacillus sp. JDR-2 Site: position = -204 score = 4.64773 sequence = CAAAAATAAACAAACATGT Site: position = -174 score = 4.2711 sequence = CAAACAAAAACAAATCTAA Gene: Pjdr2_3763: Transcriptional regulator of rhamnose utilization, DeoR family |
Transcriptional regulator of rhamnose utilization, DeoR family |
| rhaEW |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -89 score = 4.64773 sequence = CAAAAATAAACAAAAACGA Gene: BSU31220: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) |
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Bacillus licheniformis DSM 13 Site: position = -33 score = 4.64773 sequence = CAAAAATAAACAAACAAAA Gene: BLi03561: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) |
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Bacillus halodurans C-125 Site: position = -31 score = 3.88022 sequence = CAAAATAAAACAAAAATAA Gene: BH1550: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) |
Gene: ABC0375: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) |
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Paenibacillus sp. JDR-2 Site: position = -66 score = 4.14945 sequence = CAAATATAAACAAACATGA Gene: Pjdr2_3540: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) |
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) |
| rhaM2 |
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Gene: BLi03560: L-rhamnose mutarotase, alternative |
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L-rhamnose mutarotase, alternative |
| rhaI |
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Gene: BLi03559: Alternative L-rhamnose isomerase RhaI (EC 5.3.1.14) |
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Alternative L-rhamnose isomerase RhaI (EC 5.3.1.14) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |