Regulog RhaR - Bacillales

Properties
Regulator type:	Transcription factor
Regulator family:	DeoR
Regulation mode:	repressor
Biological process:	Rhamnose utilization
Effector:	Rhamnulose-1-phosphate
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

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Member of regulog collections

By taxonomy - Bacillales
By TF family - DeoR
By effector - Rhamnulose-1-phosphate
By pathway - Rhamnose utilization

Statistics of regulated genes
Genome	Genes	Operons
Bacillus subtilis subsp. subtilis str. 168	5	1
Bacillus amyloliquefaciens FZB42
Bacillus pumilus SAFR-032
Bacillus licheniformis DSM 13	5	1
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579
Bacillus halodurans C-125	4	1
Bacillus clausii KSM-K16
Oceanobacillus iheyensis HTE831	6	1
Paenibacillus sp. JDR-2	4	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
rhaM	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU31190: L-rhamnose mutarotase	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0806: L-rhamnose mutarotase	Bacillus clausii KSM-K16 Gene: ABC0376: L-rhamnose mutarotase	* Oceanobacillus iheyensis HTE831 Site: position = -122 score = 3.94897 sequence = CAAAAAATAACAAAAATAA Gene: OB0493: L-rhamnose mutarotase	Paenibacillus sp. JDR-2 Gene: Pjdr2_2754: L-rhamnose mutarotase	L-rhamnose mutarotase
rhaY	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13 Gene: BLi00639: Predicted L-rhamnose permease RhaY	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16 Gene: ABC0377: Predicted L-rhamnose permease RhaY	Oceanobacillus iheyensis HTE831 Gene: OB0494: Predicted L-rhamnose permease RhaY	Paenibacillus sp. JDR-2	Predicted L-rhamnose permease RhaY
rhaB	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU31200: Rhamnulokinase (EC 2.7.1.5)	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13 Gene: BLi03558: Rhamnulokinase (EC 2.7.1.5)	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH1551: Rhamnulokinase (EC 2.7.1.5)	Bacillus clausii KSM-K16 Gene: ABC0374: Rhamnulokinase (EC 2.7.1.5)	Oceanobacillus iheyensis HTE831 Gene: OB0495: Rhamnulokinase (EC 2.7.1.5)	Paenibacillus sp. JDR-2 Gene: Pjdr2_3538: Rhamnulokinase (EC 2.7.1.5)	Rhamnulokinase (EC 2.7.1.5)
rhaA	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU31180: L-rhamnose isomerase (EC 5.3.1.14)	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH1552: L-rhamnose isomerase (EC 5.3.1.14)	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831 Gene: OB0496: L-rhamnose isomerase (EC 5.3.1.14)	Paenibacillus sp. JDR-2 Gene: Pjdr2_3539: L-rhamnose isomerase (EC 5.3.1.14)	L-rhamnose isomerase (EC 5.3.1.14)
rhaD	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831 Gene: OB0497: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	Paenibacillus sp. JDR-2	Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)
rhaR	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU31210: Transcriptional regulator of rhamnose utilization, DeoR family	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13 Gene: BLi03557: Transcriptional regulator of rhamnose utilization, DeoR family	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH1553: Transcriptional regulator of rhamnose utilization, DeoR family	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831 Gene: OB0498: Transcriptional regulator of rhamnose utilization, DeoR family	* Paenibacillus sp. JDR-2 Site: position = -204 score = 4.64773 sequence = CAAAAATAAACAAACATGT Site: position = -174 score = 4.2711 sequence = CAAACAAAAACAAATCTAA Gene: Pjdr2_3763: Transcriptional regulator of rhamnose utilization, DeoR family	Transcriptional regulator of rhamnose utilization, DeoR family
rhaEW	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -89 score = 4.64773 sequence = CAAAAATAAACAAAAACGA Gene: BSU31220: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22)	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	* Bacillus licheniformis DSM 13 Site: position = -33 score = 4.64773 sequence = CAAAAATAAACAAACAAAA Gene: BLi03561: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22)	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	* Bacillus halodurans C-125 Site: position = -31 score = 3.88022 sequence = CAAAATAAAACAAAAATAA Gene: BH1550: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22)	Bacillus clausii KSM-K16 Gene: ABC0375: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22)	Oceanobacillus iheyensis HTE831	* Paenibacillus sp. JDR-2 Site: position = -66 score = 4.14945 sequence = CAAATATAAACAAACATGA Gene: Pjdr2_3540: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22)	Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22)
rhaM2	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13 Gene: BLi03560: L-rhamnose mutarotase, alternative	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	L-rhamnose mutarotase, alternative
rhaI	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13 Gene: BLi03559: Alternative L-rhamnose isomerase RhaI (EC 5.3.1.14)	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Alternative L-rhamnose isomerase RhaI (EC 5.3.1.14)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RhaR - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --