Regulog CssR - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | OmpR |
| Regulation mode: | activator |
| Biological process: | Protein secretion stress response |
| Effector: | CssS, sensor histidine kinase |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - OmpR
- By effector - CssS, sensor histidine kinase
- By pathway - Protein secretion stress response
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 4 | 3 |
| Bacillus amyloliquefaciens FZB42 | 4 | 3 |
| Bacillus pumilus SAFR-032 | 4 | 3 |
| Bacillus licheniformis DSM 13 | 4 | 3 |
| Anoxybacillus flavithermus WK1 | ||
| Geobacillus kaustophilus HTA426 | ||
| Bacillus cereus ATCC 14579 | ||
| Bacillus halodurans C-125 | ||
| Bacillus clausii KSM-K16 | ||
| Oceanobacillus iheyensis HTE831 | 3 | 2 |
| Paenibacillus sp. JDR-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| htrB |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -200 score = 6.39995 sequence = TTTTCATT-(1)-TTATCCCA Site: position = -221 score = 8.48492 sequence = TTTTCATA-(0)-ATTTCACA Gene: BSU33000: Serine protease, DegP/HtrA, do-like (EC 3.4.21.-) |
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Bacillus amyloliquefaciens FZB42 Site: position = -200 score = 6.39995 sequence = TTTTCATT-(1)-TTATCCCA Site: position = -221 score = 8.48492 sequence = TTTTCATA-(0)-ATTTCACA Gene: RBAM_030110: Serine protease, DegP/HtrA, do-like (EC 3.4.21.-) |
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Bacillus pumilus SAFR-032 Site: position = -122 score = 6.2324 sequence = ATTATATA-(0)-ATTTGACA Gene: BPUM_2952: Serine protease, DegP/HtrA, do-like (EC 3.4.21.-) |
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Bacillus licheniformis DSM 13 Site: position = -161 score = 6.39995 sequence = TTTTCATT-(1)-TTATCCCA Site: position = -182 score = 8.48492 sequence = TTTTCATA-(0)-ATTTCACA Gene: BLi03481: Serine protease, DegP/HtrA, do-like (EC 3.4.21.-) |
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Gene: BC5458: Serine protease, DegP/HtrA, do-like (EC 3.4.21.-) |
Gene: BH4022: Serine protease, DegP/HtrA, do-like (EC 3.4.21.-) |
Gene: ABC4094: Serine protease, DegP/HtrA, do-like (EC 3.4.21.-) |
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Oceanobacillus iheyensis HTE831 Site: position = -88 score = 6.77016 sequence = ATTACACA-(1)-TTTTTCCA Gene: OB0583: Serine protease, DegP/HtrA, do-like (EC 3.4.21.-) |
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Serine protease, DegP/HtrA, do-like (EC 3.4.21.-) |
| CRON 2. | ||||||||||||
| htrA |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -99 score = 6.39995 sequence = TTTTCATT-(1)-TTATCCCA Site: position = -120 score = 8.48492 sequence = TTTTCACA-(0)-ATTTCCCA Gene: BSU12900: Serine protease, DegP/HtrA, do-like (EC 3.4.21.-) |
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Bacillus amyloliquefaciens FZB42 Site: position = -90 score = 6.39995 sequence = TTTTCATT-(1)-TTATCCCA Site: position = -111 score = 8.48492 sequence = TTTTCACA-(0)-ATTTCCCA Gene: RBAM_012750: Serine protease, DegP/HtrA, do-like (EC 3.4.21.-) |
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Bacillus pumilus SAFR-032 Site: position = -100 score = 6.39995 sequence = TTTTCATT-(1)-TTATCCCA Site: position = -121 score = 7.63701 sequence = TTTTAACA-(0)-ATTTCCCA Gene: BPUM_1181: Serine protease, DegP/HtrA, do-like (EC 3.4.21.-) |
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Bacillus licheniformis DSM 13 Site: position = -73 score = 6.39995 sequence = TTTTCATG-(1)-TTATCCCA Site: position = -94 score = 7.52716 sequence = CTTTGACA-(0)-ATTTCCCA Gene: BLi01390: Serine protease, DegP/HtrA, do-like (EC 3.4.21.-) |
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Serine protease, DegP/HtrA, do-like (EC 3.4.21.-) |
| CRON 3. | ||||||||||||
| cssR |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -72 score = 1.11975 sequence = TGTGAAAT-(0)-TATGAAAA Site: position = -94 score = 0.352088 sequence = TGGGATAA-(1)-AATGAAAA Gene: BSU33010: Two-component response regulator of protein secretion stress, OmpR family |
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Bacillus amyloliquefaciens FZB42 Site: position = -71 score = 1.11975 sequence = TGTGAAAT-(0)-TATGAAAA Site: position = -93 score = 0.352088 sequence = TGGGATAA-(1)-AATGAAAA Gene: RBAM_030120: Two-component response regulator of protein secretion stress, OmpR family |
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Bacillus pumilus SAFR-032 Site: position = -84 score = 1.11975 sequence = TGTGAAAT-(0)-TGTGAAAA Site: position = -230 score = 0.252899 sequence = TGTCAAAT-(0)-TATATAAT Gene: BPUM_2953: Two-component response regulator of protein secretion stress, OmpR family |
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Bacillus licheniformis DSM 13 Site: position = -72 score = 1.11975 sequence = TGTGAAAT-(0)-TATGAAAA Site: position = -94 score = 0.352088 sequence = TGGGATAA-(1)-AATGAAAA Gene: BLi03482: Two-component response regulator of protein secretion stress, OmpR family |
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Oceanobacillus iheyensis HTE831 Site: position = -91 score = 0.252899 sequence = TGGAAAAA-(1)-TGTGTAAT Gene: OB0584: Two-component response regulator of protein secretion stress, OmpR family |
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Two-component response regulator of protein secretion stress, OmpR family |
| cssS |
Gene: BSU33020: Two-component sensor histidine kinase |
Gene: RBAM_030130: Two-component sensor histidine kinase |
Gene: BPUM_2954: Two-component sensor histidine kinase |
Gene: BLi03483: Two-component sensor histidine kinase |
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Gene: OB0585: Two-component sensor histidine kinase |
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Two-component sensor histidine kinase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |