Statistics of regulated genes

Genome	Genes	Operons
Escherichia coli str. K-12 substr. MG1655	12	6
Salmonella typhimurium LT2	12	6
Citrobacter koseri ATCC BAA-895	10	6
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	11	6
Enterobacter sp. 638	9	5
Erwinia amylovora ATCC 49946	7	4
Yersinia pestis KIM	6	3
Serratia proteamaculans 568	9	4
Erwinia carotovora subsp. atroseptica SCRI1043	9	4
Edwardsiella tarda EIB202	9	4
Proteus mirabilis HI4320	8	5
Photorhabdus luminescens subsp. laumondii TTO1	5	3

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes													Function
CRON 1.
glpT	* Escherichia coli str. K-12 substr. MG1655 Site: position = -218 score = 3.92198 sequence = TGTTTGATTTCGCGCA Site: position = -166 score = 3.70775 sequence = TGCGTCATTTTGAACA Gene: b2240: glycerol-3-phosphate transporter	* Salmonella typhimurium LT2 Site: position = -219 score = 3.92198 sequence = TGTTTGATTTCGCGCA Gene: STM2283: glycerol-3-phosphate transporter	* Citrobacter koseri ATCC BAA-895 Site: position = -210 score = 4.20734 sequence = CGCGCATAATCGCTCA Gene: CKO_00537: glycerol-3-phosphate transporter	* Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -217 score = 4.32795 sequence = TGTTTGATTTCGAGCA Gene: KPN_02646: glycerol-3-phosphate transporter	* Enterobacter sp. 638 Site: position = -200 score = 4.57862 sequence = TGTTTGATTTCGAACA Gene: Ent638_2804: glycerol-3-phosphate transporter	* Erwinia amylovora ATCC 49946 Site: position = -100 score = 4.27412 sequence = TGTGCGCAATGGAACA Gene: EAM_0195: glycerol-3-phosphate transporter	Yersinia pestis KIM	* Serratia proteamaculans 568 Site: position = -108 score = 4.81087 sequence = CGCTCGTTATGGAACA Gene: Spro_0199: glycerol-3-phosphate transporter	* Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -52 score = 4.51698 sequence = CGTTCGTAATAGAACA Gene: ECA4166: glycerol-3-phosphate transporter	* Edwardsiella tarda EIB202 Site: position = -153 score = 4.57251 sequence = CGCTCGAAAATGAAAA Gene: ETAE_3116: glycerol-3-phosphate transporter	* Proteus mirabilis HI4320 Site: position = -92 score = 4.49083 sequence = CGTTCGTTAAAGAAAA Gene: PMI3591: glycerol-3-phosphate transporter	* Photorhabdus luminescens subsp. laumondii TTO1 Site: position = -109 score = 4.25795 sequence = TTTTCGTTATGGAAAA Gene: plu4119: glycerol-3-phosphate transporter	glycerol-3-phosphate transporter
glpQ	Escherichia coli str. K-12 substr. MG1655 Gene: b2239: glycerophosphoryl diester phosphodiesterase	Salmonella typhimurium LT2 Gene: STM2282: glycerophosphoryl diester phosphodiesterase	Citrobacter koseri ATCC BAA-895 Gene: CKO_00538: glycerophosphoryl diester phosphodiesterase	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_02645: glycerophosphoryl diester phosphodiesterase	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM Gene: y0403: glycerophosphoryl diester phosphodiesterase	Serratia proteamaculans 568 Gene: Spro_0198: glycerophosphoryl diester phosphodiesterase	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA4167: glycerophosphoryl diester phosphodiesterase	Edwardsiella tarda EIB202 Gene: ETAE_3117: glycerophosphoryl diester phosphodiesterase	* Proteus mirabilis HI4320 Site: position = -28 score = 4.08416 sequence = TGTACGAAAATGAAAA Gene: PMI3590: glycerophosphoryl diester phosphodiesterase	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu4120: glycerophosphoryl diester phosphodiesterase	glycerophosphoryl diester phosphodiesterase
CRON 2.
glpA	* Escherichia coli str. K-12 substr. MG1655 Site: position = -70 score = 4.97631 sequence = TGCGCGAAATCAAACA Gene: b2241: anaerobic glycerol-3-phosphate dehydrogenase subunit A	* Salmonella typhimurium LT2 Site: position = -69 score = 4.97631 sequence = TGCGCGAAATCAAACA Gene: STM2284: anaerobic glycerol-3-phosphate dehydrogenase subunit A	* Citrobacter koseri ATCC BAA-895 Site: position = -69 score = 4.97631 sequence = TGCGCGAAATCAAACA Gene: CKO_00536: anaerobic glycerol-3-phosphate dehydrogenase subunit A	* Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -70 score = 5.12292 sequence = TGCTCGAAATCAAACA Gene: KPN_02647: anaerobic glycerol-3-phosphate dehydrogenase subunit A	* Enterobacter sp. 638 Site: position = -68 score = 5.02887 sequence = TGTTCGAAATCAAACA Gene: Ent638_2805: anaerobic glycerol-3-phosphate dehydrogenase subunit A	Erwinia amylovora ATCC 49946	* Yersinia pestis KIM Site: position = -90 score = 4.32326 sequence = TGTTTCTTATCAATCA Gene: y0404: anaerobic glycerol-3-phosphate dehydrogenase subunit A	* Serratia proteamaculans 568 Site: position = -73 score = 4.73484 sequence = TGTTCCTTATCAAACA Gene: Spro_0200: anaerobic glycerol-3-phosphate dehydrogenase subunit A	* Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -83 score = 4.7106 sequence = TGCTCTTTATCAAACA Gene: ECA4165: anaerobic glycerol-3-phosphate dehydrogenase subunit A	* Edwardsiella tarda EIB202 Site: position = -77 score = 4.82889 sequence = TGCTCCTTATCAAACA Gene: ETAE_3115: anaerobic glycerol-3-phosphate dehydrogenase subunit A	* Proteus mirabilis HI4320 Site: position = -106 score = 4.9245 sequence = TGCTCATTATCAAACA Gene: PMI3592: anaerobic glycerol-3-phosphate dehydrogenase subunit A	Photorhabdus luminescens subsp. laumondii TTO1	anaerobic glycerol-3-phosphate dehydrogenase subunit A
glpB	Escherichia coli str. K-12 substr. MG1655 Gene: b2242: anaerobic glycerol-3-phosphate dehydrogenase subunit B	Salmonella typhimurium LT2 Gene: STM2285: anaerobic glycerol-3-phosphate dehydrogenase subunit B	Citrobacter koseri ATCC BAA-895 Gene: CKO_00535: anaerobic glycerol-3-phosphate dehydrogenase subunit B	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_02648: anaerobic glycerol-3-phosphate dehydrogenase subunit B	Enterobacter sp. 638 Gene: Ent638_2806: anaerobic glycerol-3-phosphate dehydrogenase subunit B	Erwinia amylovora ATCC 49946	Yersinia pestis KIM Gene: y0405: anaerobic glycerol-3-phosphate dehydrogenase subunit B	Serratia proteamaculans 568 Gene: Spro_0201: anaerobic glycerol-3-phosphate dehydrogenase subunit B	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA4164: anaerobic glycerol-3-phosphate dehydrogenase subunit B	Edwardsiella tarda EIB202 Gene: ETAE_3114: anaerobic glycerol-3-phosphate dehydrogenase subunit B	Proteus mirabilis HI4320 Gene: PMI3593: anaerobic glycerol-3-phosphate dehydrogenase subunit B	Photorhabdus luminescens subsp. laumondii TTO1	anaerobic glycerol-3-phosphate dehydrogenase subunit B
glpC	Escherichia coli str. K-12 substr. MG1655 Gene: b2243: anaerobic glycerol-3-phosphate dehydrogenase subunit C	Salmonella typhimurium LT2 Gene: STM2286: anaerobic glycerol-3-phosphate dehydrogenase subunit C	Citrobacter koseri ATCC BAA-895 Gene: CKO_00534: anaerobic glycerol-3-phosphate dehydrogenase subunit C	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_02649: anaerobic glycerol-3-phosphate dehydrogenase subunit C	Enterobacter sp. 638 Gene: Ent638_2807: anaerobic glycerol-3-phosphate dehydrogenase subunit C	Erwinia amylovora ATCC 49946	Yersinia pestis KIM Gene: y0406: anaerobic glycerol-3-phosphate dehydrogenase subunit C	Serratia proteamaculans 568 Gene: Spro_0202: anaerobic glycerol-3-phosphate dehydrogenase subunit C	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA4163: anaerobic glycerol-3-phosphate dehydrogenase subunit C	Edwardsiella tarda EIB202 Gene: ETAE_3113: anaerobic glycerol-3-phosphate dehydrogenase subunit C	Proteus mirabilis HI4320 Gene: PMI3594: anaerobic glycerol-3-phosphate dehydrogenase subunit C	Photorhabdus luminescens subsp. laumondii TTO1	anaerobic glycerol-3-phosphate dehydrogenase subunit C
CRON 3.
glpD	* Escherichia coli str. K-12 substr. MG1655 Site: position = -50 score = 5.33501 sequence = TGTTCGATAACGAACA Gene: b3426: aerobic glycerol-3-phosphate dehydrogenase	* Salmonella typhimurium LT2 Site: position = -50 score = 5.33501 sequence = TGTTCGATAACGAACA Gene: STM3526: aerobic glycerol-3-phosphate dehydrogenase	* Citrobacter koseri ATCC BAA-895 Site: position = -50 score = 5.42906 sequence = TGCTCGATAACGAACA Gene: CKO_04845: aerobic glycerol-3-phosphate dehydrogenase	* Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -53 score = 4.78559 sequence = TGAGCGATATCGAGCA Gene: KPN_03792: aerobic glycerol-3-phosphate dehydrogenase	* Enterobacter sp. 638 Site: position = -50 score = 5.03626 sequence = TGAGCGATATCGAACA Gene: Ent638_3835: aerobic glycerol-3-phosphate dehydrogenase	* Erwinia amylovora ATCC 49946 Site: position = -49 score = 5.34751 sequence = TGCTCGAAAACGAACA Gene: EAM_3265: aerobic glycerol-3-phosphate dehydrogenase	* Yersinia pestis KIM Site: position = -52 score = 4.97656 sequence = TGAGCGAAAACGAACA Gene: y3891: aerobic glycerol-3-phosphate dehydrogenase	* Serratia proteamaculans 568 Site: position = -52 score = 4.97656 sequence = TGAGCGAAAACGAACA Gene: Spro_4642: aerobic glycerol-3-phosphate dehydrogenase	* Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -47 score = 5.34751 sequence = TGCTCGAAAACGAACA Gene: ECA4141: aerobic glycerol-3-phosphate dehydrogenase	* Edwardsiella tarda EIB202 Site: position = -47 score = 5.34751 sequence = TGCTCGAAAACGAACA Gene: ETAE_3312: aerobic glycerol-3-phosphate dehydrogenase	* Proteus mirabilis HI4320 Site: position = -52 score = 4.97656 sequence = TGAGCGAAAACGAACA Gene: PMI2930: aerobic glycerol-3-phosphate dehydrogenase	* Photorhabdus luminescens subsp. laumondii TTO1 Site: position = -50 score = 4.72589 sequence = TGAGCGAAAACGAGCA Gene: plu0194: aerobic glycerol-3-phosphate dehydrogenase	aerobic glycerol-3-phosphate dehydrogenase
CRON 4.
glpE	* Escherichia coli str. K-12 substr. MG1655 Site: position = -155 score = 5.31315 sequence = TGTTCGTTATCGAACA Gene: b3425: thiosulfate sulfurtransferase	* Salmonella typhimurium LT2 Site: position = -164 score = 5.31315 sequence = TGTTCGTTATCGAACA Gene: STM3525: thiosulfate sulfurtransferase	* Citrobacter koseri ATCC BAA-895 Site: position = -168 score = 5.06248 sequence = TGTTCGTTATCGAGCA Gene: CKO_04844: thiosulfate sulfurtransferase	* Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -167 score = 4.91822 sequence = TGCTCGATATCGCTCA Gene: KPN_03791: thiosulfate sulfurtransferase	Enterobacter sp. 638 Gene: Ent638_3834: thiosulfate sulfurtransferase	* Erwinia amylovora ATCC 49946 Site: position = -203 score = 4.65651 sequence = TGTTCGTTTTCGAGCA Gene: EAM_3264: thiosulfate sulfurtransferase	Yersinia pestis KIM Gene: y3899: thiosulfate sulfurtransferase	Serratia proteamaculans 568 Gene: Spro_4638: thiosulfate sulfurtransferase	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA4139: thiosulfate sulfurtransferase	Edwardsiella tarda EIB202 Gene: ETAE_3316: thiosulfate sulfurtransferase	Proteus mirabilis HI4320 Gene: PMI2927: thiosulfate sulfurtransferase	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu0197: thiosulfate sulfurtransferase	thiosulfate sulfurtransferase
glpG	Escherichia coli str. K-12 substr. MG1655 Gene: b3424: membrane protein GlpG	Salmonella typhimurium LT2 Gene: STM3524: membrane protein GlpG	Citrobacter koseri ATCC BAA-895 Gene: CKO_04842: membrane protein GlpG	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_03790: membrane protein GlpG	Enterobacter sp. 638 Gene: Ent638_3833: membrane protein GlpG	Erwinia amylovora ATCC 49946 Gene: EAM_3263: membrane protein GlpG	Yersinia pestis KIM Gene: y3898: membrane protein GlpG	Serratia proteamaculans 568 Gene: Spro_4639: membrane protein GlpG	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA4138: membrane protein GlpG	Edwardsiella tarda EIB202 Gene: ETAE_3314: membrane protein GlpG	Proteus mirabilis HI4320 Gene: PMI2928: membrane protein GlpG	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu0196: membrane protein GlpG	membrane protein GlpG
glpR	* Escherichia coli str. K-12 substr. MG1655 Site: position = -35 score = 5.07133 sequence = TGCGCGAAAACGAAAA Gene: b3423: glycerol-3-phosphate regulon repressor	* Salmonella typhimurium LT2 Site: position = -112 score = 4.66886 sequence = TGCGCGAAAACGAACG Gene: STM3523: glycerol-3-phosphate regulon repressor	* Citrobacter koseri ATCC BAA-895 Site: position = -134 score = 5.20089 sequence = TGCGCGAAAACGAACA Gene: CKO_04841: glycerol-3-phosphate regulon repressor	* Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -68 score = 3.988 sequence = TGGGCGAAAACGCGCA Gene: KPN_03789: glycerol-3-phosphate regulon repressor	* Enterobacter sp. 638 Site: position = -34 score = 5.20089 sequence = TGCGCGAAAACGAACA Gene: Ent638_3832: glycerol-3-phosphate regulon repressor	Erwinia amylovora ATCC 49946 Gene: EAM_3262: glycerol-3-phosphate regulon repressor	Yersinia pestis KIM Gene: y3897: glycerol-3-phosphate regulon repressor	Serratia proteamaculans 568 Gene: Spro_4640: glycerol-3-phosphate regulon repressor	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA4137: glycerol-3-phosphate regulon repressor	Edwardsiella tarda EIB202 Gene: ETAE_3313: glycerol-3-phosphate regulon repressor	Proteus mirabilis HI4320 Gene: PMI2929: glycerol-3-phosphate regulon repressor	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu0195: glycerol-3-phosphate regulon repressor	glycerol-3-phosphate regulon repressor
CRON 5.
glpF	* Escherichia coli str. K-12 substr. MG1655 Site: position = -158 score = 4.18155 sequence = GGCGCGATAACGCTCA Site: position = -96 score = 5.21649 sequence = TGCTCGTTAACGATAA Gene: b3927: glycerol uptake facilitator protein	* Salmonella typhimurium LT2 Site: position = -101 score = 5.21649 sequence = TGCTCGTTAACGATAA Site: position = -164 score = 4.18155 sequence = GGCGCGATAACGCTCA Gene: STM4087: glycerol uptake facilitator protein	* Citrobacter koseri ATCC BAA-895 Site: position = -99 score = 5.21649 sequence = TGCTCGTTAACGATAA Site: position = -162 score = 4.18155 sequence = GGCGCGATAACGCTCA Gene: CKO_03071: glycerol uptake facilitator protein	* Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -162 score = 4.1 sequence = GGCGCGAAAACGCTCA Site: position = -99 score = 5.21649 sequence = TGCTCGTTAACGATAA Gene: KPN_04010: glycerol uptake facilitator protein	* Enterobacter sp. 638 Site: position = -101 score = 5.21649 sequence = TGCTCGTTAACGATAA Site: position = -164 score = 4.1 sequence = AGCGCGAAAACGCTCA Gene: Ent638_4046: glycerol uptake facilitator protein	* Erwinia amylovora ATCC 49946 Site: position = -100 score = 4.5904 sequence = TGTTCGTTAACGATAG Site: position = -163 score = 4.06184 sequence = TACGCGAAAACGCTCA Gene: EAM_0119: glycerol uptake facilitator protein	* Yersinia pestis KIM Site: position = -93 score = 5.01376 sequence = CGCTCGTTAACGATAA Site: position = -155 score = 4.06184 sequence = TACGCGAAAACGCTCA Gene: y0046: glycerol uptake facilitator protein	* Serratia proteamaculans 568 Site: position = -137 score = 5.12243 sequence = TGTTCGTTAACGATAA Gene: Spro_4797: glycerol uptake facilitator protein	* Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -107 score = 4.73378 sequence = CGCTCATTAACGATAA Gene: ECA4266: glycerol uptake facilitator protein	* Edwardsiella tarda EIB202 Site: position = -93 score = 5.01376 sequence = CGCTCGTTAACGATAA Gene: ETAE_3441: glycerol uptake facilitator protein	* Proteus mirabilis HI4320 Site: position = -86 score = 4.73378 sequence = CGCTCATTAACGATAA Gene: PMI3211: glycerol uptake facilitator protein	* Photorhabdus luminescens subsp. laumondii TTO1 Site: position = -97 score = 4.58716 sequence = CGCGCATTAACGATAA Gene: plu4767: glycerol uptake facilitator protein	glycerol uptake facilitator protein
glpK	Escherichia coli str. K-12 substr. MG1655 Gene: b3926: glycerol kinase	Salmonella typhimurium LT2 Gene: STM4086: glycerol kinase	Citrobacter koseri ATCC BAA-895 Gene: CKO_03072: glycerol kinase	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04011: glycerol kinase	Enterobacter sp. 638 Gene: Ent638_4047: glycerol kinase	Erwinia amylovora ATCC 49946 Gene: EAM_0118: glycerol kinase	Yersinia pestis KIM Gene: y0047: glycerol kinase	Serratia proteamaculans 568 Gene: Spro_4798: glycerol kinase	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA4267: glycerol kinase	Edwardsiella tarda EIB202 Gene: ETAE_3442: glycerol kinase	Proteus mirabilis HI4320 Gene: PMI3210: glycerol kinase	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu4768: glycerol kinase	glycerol kinase
glpX	Escherichia coli str. K-12 substr. MG1655 Gene: b3925: fructose 1,6-bisphosphatase II	Salmonella typhimurium LT2 Gene: STM4085: fructose 1,6-bisphosphatase II	Citrobacter koseri ATCC BAA-895 Gene: CKO_03075: fructose 1,6-bisphosphatase II	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04001: fructose 1,6-bisphosphatase II	Enterobacter sp. 638 Gene: Ent638_4048: fructose 1,6-bisphosphatase II	Erwinia amylovora ATCC 49946 Gene: EAM_0116: fructose 1,6-bisphosphatase II	Yersinia pestis KIM Gene: y0048: fructose 1,6-bisphosphatase II	Serratia proteamaculans 568 Gene: Spro_4799: fructose 1,6-bisphosphatase II	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA4268: fructose 1,6-bisphosphatase II	Edwardsiella tarda EIB202 Gene: ETAE_3443: fructose 1,6-bisphosphatase II	Proteus mirabilis HI4320 Gene: PMI1524: fructose 1,6-bisphosphatase II	Photorhabdus luminescens subsp. laumondii TTO1	fructose 1,6-bisphosphatase II

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