Regulog MurR - Bacillales

Properties
Regulator type:	Transcription factor
Regulator family:	RpiR
Regulation mode:	repressor
Biological process:	N-acetylmuramate utilization
Effector:	N-acetylmuramate-6-phosphate
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 3 sites [see more]

Member of regulog collections

By taxonomy - Bacillales
By TF family - RpiR
By effector - N-acetylmuramate-6-phosphate
By pathway - N-acetylmuramate utilization

Statistics of regulated genes
Genome	Genes	Operons
Bacillus subtilis subsp. subtilis str. 168	6	1
Bacillus amyloliquefaciens FZB42
Bacillus pumilus SAFR-032	6	1
Bacillus licheniformis DSM 13	6	1
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579
Bacillus halodurans C-125
Bacillus clausii KSM-K16
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
murQ	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -103 score = 6.03376 sequence = GTGAAATAAAATTTCAA Gene: BSU01700: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_002180: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)	* Bacillus pumilus SAFR-032 Site: position = -90 score = 6.15721 sequence = CTGAAATATAATTTCAG Gene: BPUM_0158: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)	* Bacillus licheniformis DSM 13 Site: position = -74 score = 6.20815 sequence = TTGAAATTATATTTCAG Gene: BLi00191: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579 Gene: BC0841: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)	Bacillus halodurans C-125 Gene: BH3575: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)	Bacillus clausii KSM-K16 Gene: ABC0311: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)	Oceanobacillus iheyensis HTE831 Gene: OB0614: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)	Paenibacillus sp. JDR-2	N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
murR	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU01690: Transcriptional regulator of muropeptide rescue pathway operon, RpiR family	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032 Gene: BPUM_0157: Transcriptional regulator of muropeptide rescue pathway operon, RpiR family	Bacillus licheniformis DSM 13 Gene: BLi00190: Transcriptional regulator of muropeptide rescue pathway operon, RpiR family	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Transcriptional regulator of muropeptide rescue pathway operon, RpiR family
ybbF	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU01680: PTS system, MurNAc-specific IIBC component (EC 2.7.1.69)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_002170: PTS system, MurNAc-specific IIBC component (EC 2.7.1.69)	Bacillus pumilus SAFR-032 Gene: BPUM_0156: PTS system, MurNAc-specific IIBC component (EC 2.7.1.69)	Bacillus licheniformis DSM 13 Gene: BLi00189: PTS system, MurNAc-specific IIBC component (EC 2.7.1.69)	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579 Gene: BC0842: PTS system, MurNAc-specific IIBC component (EC 2.7.1.69)	Bacillus halodurans C-125 Gene: BH3574: PTS system, MurNAc-specific IIBC component (EC 2.7.1.69)	Bacillus clausii KSM-K16 Gene: ABC0312: PTS system, MurNAc-specific IIBC component (EC 2.7.1.69)	Oceanobacillus iheyensis HTE831 Gene: OB0615: PTS system, MurNAc-specific IIBC component (EC 2.7.1.69)	Paenibacillus sp. JDR-2	PTS system, MurNAc-specific IIBC component (EC 2.7.1.69)
amiE	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU01670: Amidase of hydrolyzes the N-acetylmuramyl- L-Ala bond of MurNAc peptides	Bacillus amyloliquefaciens FZB42 Gene: RBAM_002160: Amidase of hydrolyzes the N-acetylmuramyl- L-Ala bond of MurNAc peptides	Bacillus pumilus SAFR-032 Gene: BPUM_0155: Amidase of hydrolyzes the N-acetylmuramyl- L-Ala bond of MurNAc peptides	Bacillus licheniformis DSM 13 Gene: BLi00188: Amidase of hydrolyzes the N-acetylmuramyl- L-Ala bond of MurNAc peptides	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Amidase of hydrolyzes the N-acetylmuramyl- L-Ala bond of MurNAc peptides
nagZ	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU01660: Beta--N-acetylglucosaminidase	Bacillus amyloliquefaciens FZB42 Gene: RBAM_002150: Beta--N-acetylglucosaminidase	Bacillus pumilus SAFR-032 Gene: BPUM_0154: Beta--N-acetylglucosaminidase	Bacillus licheniformis DSM 13 Gene: BLi00187: Beta--N-acetylglucosaminidase	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0675: Beta--N-acetylglucosaminidase	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Beta--N-acetylglucosaminidase
ybbC	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU01650: Hypothetical protein	Bacillus amyloliquefaciens FZB42 Gene: RBAM_002140: Hypothetical protein	Bacillus pumilus SAFR-032 Gene: BPUM_0153: Hypothetical protein	Bacillus licheniformis DSM 13 Gene: BLi00186: Hypothetical protein	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0674: Hypothetical protein	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831 Gene: OB1304: Hypothetical protein	Paenibacillus sp. JDR-2	Hypothetical protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog MurR - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --