Regulog MurR - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | RpiR |
| Regulation mode: | repressor |
| Biological process: | N-acetylmuramate utilization |
| Effector: | N-acetylmuramate-6-phosphate |
| Phylum: | Firmicutes |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - RpiR
- By effector - N-acetylmuramate-6-phosphate
- By pathway - N-acetylmuramate utilization
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 6 | 1 |
| Bacillus amyloliquefaciens FZB42 | ||
| Bacillus pumilus SAFR-032 | 6 | 1 |
| Bacillus licheniformis DSM 13 | 6 | 1 |
| Anoxybacillus flavithermus WK1 | ||
| Geobacillus kaustophilus HTA426 | ||
| Bacillus cereus ATCC 14579 | ||
| Bacillus halodurans C-125 | ||
| Bacillus clausii KSM-K16 | ||
| Oceanobacillus iheyensis HTE831 | ||
| Paenibacillus sp. JDR-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| murQ |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -103 score = 6.03376 sequence = GTGAAATAAAATTTCAA Gene: BSU01700: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-) |
Gene: RBAM_002180: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-) |
*
Bacillus pumilus SAFR-032 Site: position = -90 score = 6.15721 sequence = CTGAAATATAATTTCAG Gene: BPUM_0158: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-) |
*
Bacillus licheniformis DSM 13 Site: position = -74 score = 6.20815 sequence = TTGAAATTATATTTCAG Gene: BLi00191: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-) |
|
|
Gene: BC0841: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-) |
Gene: BH3575: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-) |
Gene: ABC0311: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-) |
Gene: OB0614: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-) |
|
N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-) |
| murR |
Gene: BSU01690: Transcriptional regulator of muropeptide rescue pathway operon, RpiR family |
|
Gene: BPUM_0157: Transcriptional regulator of muropeptide rescue pathway operon, RpiR family |
Gene: BLi00190: Transcriptional regulator of muropeptide rescue pathway operon, RpiR family |
|
|
|
|
|
|
|
Transcriptional regulator of muropeptide rescue pathway operon, RpiR family |
| ybbF |
Gene: BSU01680: PTS system, MurNAc-specific IIBC component (EC 2.7.1.69) |
Gene: RBAM_002170: PTS system, MurNAc-specific IIBC component (EC 2.7.1.69) |
Gene: BPUM_0156: PTS system, MurNAc-specific IIBC component (EC 2.7.1.69) |
Gene: BLi00189: PTS system, MurNAc-specific IIBC component (EC 2.7.1.69) |
|
|
Gene: BC0842: PTS system, MurNAc-specific IIBC component (EC 2.7.1.69) |
Gene: BH3574: PTS system, MurNAc-specific IIBC component (EC 2.7.1.69) |
Gene: ABC0312: PTS system, MurNAc-specific IIBC component (EC 2.7.1.69) |
Gene: OB0615: PTS system, MurNAc-specific IIBC component (EC 2.7.1.69) |
|
PTS system, MurNAc-specific IIBC component (EC 2.7.1.69) |
| amiE |
Gene: BSU01670: Amidase of hydrolyzes the N-acetylmuramyl- L-Ala bond of MurNAc peptides |
Gene: RBAM_002160: Amidase of hydrolyzes the N-acetylmuramyl- L-Ala bond of MurNAc peptides |
Gene: BPUM_0155: Amidase of hydrolyzes the N-acetylmuramyl- L-Ala bond of MurNAc peptides |
Gene: BLi00188: Amidase of hydrolyzes the N-acetylmuramyl- L-Ala bond of MurNAc peptides |
|
|
|
|
|
|
|
Amidase of hydrolyzes the N-acetylmuramyl- L-Ala bond of MurNAc peptides |
| nagZ |
Gene: BSU01660: Beta--N-acetylglucosaminidase |
Gene: RBAM_002150: Beta--N-acetylglucosaminidase |
Gene: BPUM_0154: Beta--N-acetylglucosaminidase |
Gene: BLi00187: Beta--N-acetylglucosaminidase |
|
|
|
Gene: BH0675: Beta--N-acetylglucosaminidase |
|
|
|
Beta--N-acetylglucosaminidase |
| ybbC |
Gene: BSU01650: Hypothetical protein |
Gene: RBAM_002140: Hypothetical protein |
Gene: BPUM_0153: Hypothetical protein |
Gene: BLi00186: Hypothetical protein |
|
|
|
Gene: BH0674: Hypothetical protein |
|
Gene: OB1304: Hypothetical protein |
|
Hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |