Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Bacillus licheniformis DSM 13

Reference regulog properties
Source regulog: Fur - Bacillales
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus licheniformis DSM 13
Orthologous TF(s) BLi02503
Regulated genes 20
Built upon 200 sites [see more]
Predicted regulatory interactions in Bacillus licheniformis DSM 13
Locus tag Position Score Sequence
Position: -45
Score: 6.4
Sequence: ATTGATAATGATAATCATT
Locus tag: BLi00463
BLi00463 -45 6.4 ATTGATAATGATAATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yclN
Ortholog function: Iron compound ABC uptake transporter permease protein
Bacillus subtilis subsp. subtilis str. 168 BSU03800 -98 6.4 AATGATAATGATAATCAAT
-92 4.9 AATGATAATCAATTACTAT
Bacillus amyloliquefaciens FZB42 RBAM_004050 -87 5.9 GTTGATAATGATAATCATT
Bacillus pumilus SAFR-032 BPUM_0984 -57 6.4 ATTGATAATGATAATCATT
Bacillus licheniformis DSM 13 BLi00463 -46 6.4 ATTGATAATGATaATCAtT
Bacillus cereus ATCC 14579 BC5105 -107 6.5 AATGAAAATGATTATCAAT
Bacillus halodurans C-125 BH1025 -71 6.1 AATGATAATGCTTATCATT
-49 6.2 ACTGATAATGATTATCACT
Bacillus clausii KSM-K16 ABC2895 -129 4.5 AGCGAGATTCTTTCTCATT
-68 6.2 ATTGATAATGAGTATCATT
Oceanobacillus iheyensis HTE831 OB0539 -61 5.2 CTTAATAATGATAATCATT
-55 6.5 AATGATAATCATTTTCAAT
Position: -207
Score: 6.7
Sequence: ATTGATAATGATTATCAAT
Locus tag: BLi00541
BLi00541 -207 6.7 ATTGATAATGATTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydbN
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU04530 -164 6.7 ATTGATAATGATTATCAAT
Bacillus amyloliquefaciens FZB42 RBAM_004860 -208 6.1 ACTGATAATGATTCTCAAT
Bacillus pumilus SAFR-032 BPUM_0425 -74 6.5 ATTGAAAATGATTATCAAT
Bacillus licheniformis DSM 13 BLi00541 -207 6.7 ATTGATAATGATTATCAAT
Position: -33
Score: 6.5
Sequence: AATGATAATCATTTTCATT
Locus tag: BLi00873
BLi00873 -33 6.5 AATGATAATCATTTTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfhC
Ortholog function: Putative nitroreductase family protein
Bacillus subtilis subsp. subtilis str. 168 BSU08480 -40 6.5 AATGATAATCATTTTCAAT
Bacillus amyloliquefaciens FZB42 RBAM_008550 -40 6.5 AATGATAATCATTTTCATT
Bacillus pumilus SAFR-032 BPUM_0791 -45 5.9 AATGAGAATCAATTTCAAT
Bacillus licheniformis DSM 13 BLi00873 -33 6.5 AATGATAATCATTTTCATT
Bacillus cereus ATCC 14579 BC0786 -67 6.2 ATTGAAAATCAATATCAAT
Bacillus halodurans C-125 BH0303 -91 6.1 TTTGAAAATGATTATCATT
Bacillus clausii KSM-K16 ABC0928 -80 5.6 AATGAAAATGAGAATCATT
Oceanobacillus iheyensis HTE831 OB0528 -41 6.5 ATTGATAATAATTATCAAT
Position: -77
Score: 6.7
Sequence: AATGATAATGATTATCATT
Position: -71
Score: 5.9
Sequence: AATGATTATCATTGTCATT
Locus tag: BLi01111
BLi01111 -77 6.7 AATGATAATGATTATCATT
-71 5.9 AATGATTATCATTGTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhfQ
Ortholog function: Putative iron(III) dicitrate-binding lipoprotein
Bacillus subtilis subsp. subtilis str. 168 BSU10330 -82 5.7 GGTGATAATGATTCTCATT
Bacillus amyloliquefaciens FZB42 RBAM_010510 -72 6.4 AATGATAATGAATATCATT
Bacillus licheniformis DSM 13 BLi01111 -77 6.7 AATGATAATGATTATCATT
Position: -35
Score: 6.2
Sequence: AATGATAATCTTTATCAAT
Locus tag: BLi01183
BLi01183 -35 6.2 AATGATAATCTTTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dat
Ortholog function: Siderophore biosynthesis diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76)
Bacillus pumilus SAFR-032 BPUM_1019 -36 6.2 AATGATAATCTTTATCAAT
Bacillus licheniformis DSM 13 BLi01183 -35 6.2 AATGATAATCTTTATCAAT
Bacillus halodurans C-125 BH2624 -100 5.9 GATGATTATCATTATCAAT
-59 6.5 AATGATAATCATTATCACT
Position: -73
Score: 6.7
Sequence: ATTGATAATCATTATCATT
Locus tag: BLi01629
BLi01629 -73 6.7 ATTGATAATCATTATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ykuN
Ortholog function: Flavodoxin
Bacillus licheniformis DSM 13 BLi01629 -73 6.7 ATTGATAATCATTATCATT
-35 6.5 AATGAAAATCATTATCAAT
Position: -108
Score: 6.2
Sequence: ATTGATAATCATTTTCAGT
Locus tag: BLi01925
BLi01925 -108 6.2 ATTGATAATCATTTTCAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: miaB
Ortholog function: (dimethylallyl)adenosine tRNA methylthiotransferase
Bacillus subtilis subsp. subtilis str. 168 BSU17010 -110 5.8 ATTGATTATTATTCTCAAT
Bacillus amyloliquefaciens FZB42 RBAM_016850 -111 5.3 ATTGATTCTTATTCTCAAT
Bacillus licheniformis DSM 13 BLi01925 -108 6.2 ATTGATAATCATTTTCAGT
Position: -40
Score: 6
Sequence: AATGATAATGGTTCTCAAT
Locus tag: BLi02271
BLi02271 -40 6 AATGATAATGGTTCTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: exlX
Ortholog function: Extracellular endoglucanase precursor (expansin)
Bacillus subtilis subsp. subtilis str. 168 BSU18630 -46 6.4 AATGATAATGATTCTCATT
Bacillus licheniformis DSM 13 BLi02271 -40 6 AATGATAATGGTTCTCAAT
Position: -143
Score: 5.2
Sequence: TGTGATAAGCATTCTCAAT
Locus tag: BLi02443
BLi02443 -143 5.2 TGTGATAAGCATTCTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fer
Ortholog function: Ferredoxin
Bacillus licheniformis DSM 13 BLi02443 -143 5.2 TGTGATAAGCATTCTCAAT
Anoxybacillus flavithermus WK1 Aflv_1057 -132 5.3 ACTGATAAGCATTTTCAGT
Position: -79
Score: 4.9
Sequence: ATTTATAATGATTATAGTT
Locus tag: BLi02503
BLi02503 -79 4.9 ATTTATAATGATTATAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fur
Ortholog function: Transcriptional regulator for iron transport and metabolism, Fur family
Bacillus amyloliquefaciens FZB42 RBAM_021640 -118 4.8 TTTTAGAATGATTATCACA
Bacillus pumilus SAFR-032 BPUM_2084 -78 4.7 ATTTAAAATGATTATAGTT
Bacillus licheniformis DSM 13 BLi02503 -119 5 ATTTATAATGATTATTAAA
-79 4.9 ATTTATAATGATTATAGTT
Geobacillus kaustophilus HTA426 GK2317 -102 5.3 TATAATAACCATTATCATT
Bacillus cereus ATCC 14579 BC4091 -101 5.8 TTTGAGAATAATTATCAAT
Bacillus halodurans C-125 BH1527 -103 4.7 ACTAATAATAATTATCTGT
-79 5.4 AATAATAATCATTATTAAT
Bacillus clausii KSM-K16 ABC1780 -102 4.9 AATGATATTCATTTGCAGA
Oceanobacillus iheyensis HTE831 OB1849 -96 4.8 TATTATAATTATTATAATT
Paenibacillus sp. JDR-2 Pjdr2_1270 -77 5.1 AATTATAATCATTCTAAAT
Position: -53
Score: 5.8
Sequence: ATTGATAATGATTCTCTTT
Locus tag: BLi02658
BLi02658 -53 5.8 ATTGATAATGATTCTCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fhuD
Ortholog function: Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3)
Bacillus subtilis subsp. subtilis str. 168 BSU33320 -184 6.4 ACTGATAATGATTATCAAT
-51 5.3 GATGATAATGATTCTCTTT
Bacillus amyloliquefaciens FZB42 RBAM_030440 -187 6.7 AATGATAATGATTATCAAT
-51 5.5 ACTGATAATGATTCTCTTT
Bacillus pumilus SAFR-032 BPUM_2994 -220 6.7 AATGATAATGATTATCAAT
-44 6 ATTGAGAATCATTATCATA
Bacillus licheniformis DSM 13 BLi02658 -53 5.8 ATTGATAATGATTCTCTTT
Position: -241
Score: 6.3
Sequence: AATGATTATCATTATCATT
Position: -41
Score: 6
Sequence: AATGAAAATGATTATCAAC
Locus tag: BLi02811
BLi02811 -241 6.3 AATGATTATCATTATCATT
-41 6 AATGAAAATGATTATCAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nikA
Ortholog function: Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3)
Bacillus pumilus SAFR-032 BPUM_3070 -40 5.7 AATGAAAATGATTATCAGC
-34 5.1 AATGATTATCAGCATCAAT
Bacillus licheniformis DSM 13 BLi02811 -241 6.3 AATGATTATCATTATCATT
-41 6 AATGAAAATGATTATCAAC
Bacillus halodurans C-125 BH0567 -51 6.1 TTTGAAAATGATTATCATT
-35 4.6 ATTGTTAATTATATTCAGA
Position: -36
Score: 4.9
Sequence: ATTAAGAACAATTTTCATT
Locus tag: BLi03393
BLi03393 -36 4.9 ATTAAGAACAATTTTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yumC
Ortholog function: Ferredoxin--NADP reductase 2
Bacillus subtilis subsp. subtilis str. 168 BSU32110 -36 5.2 ATTAATAACAATTTTCATT
Bacillus amyloliquefaciens FZB42 RBAM_029160 -35 5.2 ATTAATAACAATTTTCAAT
Bacillus pumilus SAFR-032 BPUM_2873 -35 5.6 AGTGATAACAATTTTCATT
Bacillus licheniformis DSM 13 BLi03393 -36 4.9 ATTAAGAACAATTTTCATT
Bacillus clausii KSM-K16 ABC2925 -39 4.9 AATGAGAAAGGATTTCATT
Oceanobacillus iheyensis HTE831 OB2351 -324 5 TATCATTTTCATTATCAAT
Position: -81
Score: 5.8
Sequence: ATTGAAAATGATTTTCAAG
Locus tag: BLi03474
BLi03474 -81 5.8 ATTGAAAATGATTTTCAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfiZ
Ortholog function: Iron(III) siderophore transport permease
Bacillus subtilis subsp. subtilis str. 168 BSU08450 -115 6.2 ATTGAAATTCATTATCATT
-58 4.9 ATTGAGGATTATTCTCAAA
Bacillus licheniformis DSM 13 BLi03474 -81 5.8 ATTGAAAATGATTTTCAAG
Anoxybacillus flavithermus WK1 Aflv_1267 -153 5.4 TTTGAAAATGATTTTCGTT
-113 6.2 AATGATAATCATTGTCAAT
-29 4.9 ACTGATATTCGATATCAAA
Geobacillus kaustophilus HTA426 GK1459 -181 5.8 TTTGATAATGAATTTCATT
-141 5.2 AGTGAGAATCATTGTCAAC
-68 5 GATGAGAGTCATTATCAAA
Position: -46
Score: 5.5
Sequence: AATGATAATCGTTATCGGT
Locus tag: BLi03521
BLi03521 -46 5.5 AATGATAATCGTTATCGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fhuB
Ortholog function: Ferrichrome transport system permease protein FhuB (TC 3.A.1.14.3)
Bacillus subtilis subsp. subtilis str. 168 BSU33310 -65 5.3 AAAGAGAATCATTATCATC
Bacillus amyloliquefaciens FZB42 RBAM_030430 -185 5.5 AAAGAGAATCATTATCAGT
-49 6.7 ATTGATAATCATTATCATT
Bacillus pumilus SAFR-032 BPUM_2992 -234 6 TATGATAATGATTCTCAAT
-58 6.7 ATTGATAATCATTATCATT
Bacillus licheniformis DSM 13 BLi03521 -46 5.5 AATGATAATCGTTATCGGT
Bacillus halodurans C-125 BH1083 -51 6.5 AGTGATAATGATTATCAAT
Position: -94
Score: 6.2
Sequence: AACGATAATGATTATCATT
Position: -88
Score: 6.4
Sequence: AATGATTATCATTATCAAT
Locus tag: BLi03902
BLi03902 -94 6.2 AACGATAATGATTATCATT
-88 6.4 AATGATTATCATTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dhbA
Ortholog function: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28)
Bacillus subtilis subsp. subtilis str. 168 BSU32000 -121 4.6 TATGATTATTTTTATAATT
-99 6.7 AATGATAATCATTATCAAT
Bacillus amyloliquefaciens FZB42 RBAM_029050 -53 6.7 AATGATAATCATTATCAAT
Bacillus licheniformis DSM 13 BLi03902 -88 6.4 AATGATTATCATTATCAAT
Bacillus cereus ATCC 14579 BC2302 -158 6 AATGAAAAACATTATCAAT
-64 6.2 AATGAAAATCAATATCATT
Oceanobacillus iheyensis HTE831 OB0954 -107 6.7 AATGATAATCATTATCATT
-37 6.4 ATTGAGAATGATTATCAAT
Position: -41
Score: 6.1
Sequence: ATTGATAATAGTTATCAAT
Locus tag: BLi03906
BLi03906 -41 6.1 ATTGATAATAGTTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: feuA
Ortholog function: Fe3+-bacillibactin ABC transporter substrate-binding protein
Bacillus subtilis subsp. subtilis str. 168 BSU01630 -38 6.1 ATTGATAATAGTTATCAAT
Bacillus amyloliquefaciens FZB42 RBAM_002120 -38 6.1 ATTGATAATAGTTATCAAT
Bacillus pumilus SAFR-032 BPUM_3701 -34 5.5 ATTGAGAACAATTATCAGT
Bacillus licheniformis DSM 13 BLi03906 -302 5.1 TATCATTATGATTTTCATT
-41 6.1 ATTGATAATAGTTATCAAT
Position: -58
Score: 5.6
Sequence: AATGCGAATCATTATCACT
Locus tag: BLi04262
BLi04262 -58 5.6 AATGCGAATCATTATCACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yxeB
Ortholog function: Fe3+-hydroxamate ABC transporter substrate-binding protein
Bacillus subtilis subsp. subtilis str. 168 BSU39610 -55 6.4 ATTGATAATGATAATCATT
Bacillus amyloliquefaciens FZB42 RBAM_036560 -36 6.5 AATGATAATCATTATCACT
Bacillus licheniformis DSM 13 BLi04262 -58 5.6 AATGCGAATCATTATCACT
Bacillus clausii KSM-K16 ABC3476 -49 5.8 GGTGATAATGATTTTCATT
Position: -42
Score: 5.9
Sequence: TATGATAACGATTATCATT
Position: -36
Score: 4.9
Sequence: AACGATTATCATTTTCAGA
Locus tag: BLi04266
BLi04266 -42 5.9 TATGATAACGATTATCATT
-36 4.9 AACGATTATCATTTTCAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron uptake system protein A
Bacillus licheniformis DSM 13 BLi04266 -42 5.9 TATGATAACGATTATCATT
Anoxybacillus flavithermus WK1 Aflv_0305 -38 5.6 ATTGAAAAAGGTTATCATT
Geobacillus kaustophilus HTA426 GK1849 -59 4.8 ATTGAGAAAAAGAATCATT
Bacillus cereus ATCC 14579 BC4807 -39 5.9 TTTGAAAATAATTATCATT
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