Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of CcpA regulog to Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446

Reference regulog properties
Source regulog: CcpA - Bacillales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein
Phylum: Firmicutes
Propagated regulon:
Target genome Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
Orthologous TF(s) Aaci_1713
Regulated genes 9
Built upon 559 sites [see more]
Predicted regulatory interactions in Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
Locus tag Position Score Sequence
Position: -36
Score: 4
Sequence: CAGAAAGCGATTACAA
Locus tag: Aaci_0220
Aaci_0220 -36 4 CAGAAAGCGATTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtlA
Ortholog function: PTS family mannitol-permease II, BC component
Anoxybacillus flavithermus WK1 Aflv_1566 -58 4.5 CTGTAAGCGCTTTAAT
Bacillus amyloliquefaciens FZB42 RBAM_004230 -96 4.6 TTGTAAGCGTTTTATG
Bacillus halodurans C-125 BH3854 -39 4.3 ATGAGAGCGCTTTATT
Bacillus licheniformis DSM 13 BLi00505 -94 4.4 CTGTAAGCGTTTTAAT
Bacillus pumilus SAFR-032 BPUM_0369 -106 4.1 GTGAAAGCGTTTTACG
Bacillus subtilis subsp. subtilis str. 168 BSU03981 -95 4 CTGTAAGCGTTTTAAC
Geobacillus kaustophilus HTA426 GK1948 -54 4.8 TTGTAAGCGTTTTAAG
Oceanobacillus iheyensis HTE831 OB2603 -75 4.4 TTGTAAGCGGATTCCT
Paenibacillus sp. JDR-2 Pjdr2_6226 -33 4.1 AAGAAAGCGATTTTAT
Position: -309
Score: 4.3
Sequence: ATGAAAACATTTTCGT
Locus tag: Aaci_0793
Aaci_0793 -309 4.3 ATGAAAACATTTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: msmR
Ortholog function: Transcriptional regulator of alpha-galactoside utilization, LacI family
Bacillus amyloliquefaciens FZB42 RBAM_027180 -91 4.8 TTGAAAACGCTTACTC
Bacillus halodurans C-125 BH2227 -95 4.5 TTGAAAACGCTTACCC
Bacillus licheniformis DSM 13 BLi01139 -75 4.2 TTGAAAACTTTTACCT
Bacillus pumilus SAFR-032 BPUM_1754 -78 4.4 TTGAAAGCGCTTTACC
Bacillus subtilis subsp. subtilis str. 168 BSU30260 -86 4.8 TTGTAACCGCTTACTT
Position: -73
Score: 4.3
Sequence: ATGTAACCGCTATCGA
Locus tag: Aaci_0798
Aaci_0798 -73 4.3 ATGTAACCGCTATCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mmgD
Ortholog function: Citrate synthase (si) (EC 2.3.3.1)
Anoxybacillus flavithermus WK1 Aflv_0504 -107 4.6 ATGTAAGCATTTTCTT
Anoxybacillus flavithermus WK1 Aflv_0504 -107 4.6 ATGTAAGCATTTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_026180 -114 4.6 ATGTAAGCATTTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_022420 -43 4.6 GTGTAAGCGTTATCTT
Bacillus clausii KSM-K16 ABC1805 -63 4.9 ATGTAAGCGCTTTATT
Bacillus clausii KSM-K16 ABC2715 174 4.6 TTGGAATCGTTTTCAA
Bacillus licheniformis DSM 13 BLi03062 -115 4.6 ATGTAAGCATTTTCTT
Bacillus licheniformis DSM 13 BLi03062 -115 4.6 ATGTAAGCATTTTCTT
Bacillus pumilus SAFR-032 BPUM_2556 -111 4.6 ATGTAAGCATTTTCTT
-69 4.5 TGGATAGCGCTTTCAA
Bacillus pumilus SAFR-032 BPUM_2556 -111 4.6 ATGTAAGCATTTTCTT
-69 4.5 TGGATAGCGCTTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU24140 -37 4.9 TTGTAAGCGCTGTCTA
Bacillus subtilis subsp. subtilis str. 168 BSU29140 -114 4.6 ATGTAAGCATTTTCTT
Oceanobacillus iheyensis HTE831 OB2269 -39 4.4 TTGACTGCGCTTTCAA
Position: -223
Score: 4.7
Sequence: TTGCAAGCGGTTTCAT
Locus tag: Aaci_2232
Aaci_2232 -223 4.7 TTGCAAGCGGTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dat
Ortholog function: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Anoxybacillus flavithermus WK1 Aflv_0590 -170 4.8 ATGTAAGCGGATACAT
Bacillus cereus ATCC 14579 BC1396 -153 5 TTGTAAACGTTAACAA
Bacillus licheniformis DSM 13 BLi02962 -225 5 ATGTAAGCGTATACAA
Bacillus pumilus SAFR-032 BPUM_2473 -200 4.6 GTGTAAGCGTATACAT
Geobacillus kaustophilus HTA426 GK2662 -165 5.1 ATGTAAGCGCATTCAA
Position: -30
Score: 4.2
Sequence: GTGGAAACGTTACCAT
Locus tag: Aaci_2280
Aaci_2280 -30 4.2 GTGGAAACGTTACCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsD
Ortholog function: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
Anoxybacillus flavithermus WK1 Aflv_2671 -34 4.5 ATGTAACCGGTTACAG
Bacillus amyloliquefaciens FZB42 RBAM_033100 -33 5 ATGTAAACGGTTACAT
Bacillus cereus ATCC 14579 BC0661 -35 4.4 CTGTAAACGGTTACAT
Bacillus clausii KSM-K16 ABC3547 -33 4.1 CTGTAACCGGTTACAT
Bacillus pumilus SAFR-032 BPUM_3265 -38 4.2 GTGTAAACGGTTACAC
Bacillus subtilis subsp. subtilis str. 168 BSU35930 -34 5 ATGTAAACGGTTACAT
Oceanobacillus iheyensis HTE831 OB2575 -68 4.8 ATCAAAACGCTTTCAT
-40 4.1 CTGAAACCGGTTCCAT
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