Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Bacillus megaterium DSM319

Reference regulog properties
Source regulog: Fur - Bacillales
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus megaterium DSM319
Orthologous TF(s) BMD_4385
Regulated genes 13
Built upon 200 sites [see more]
Predicted regulatory interactions in Bacillus megaterium DSM319
Locus tag Position Score Sequence
Position: -67
Score: 6
Sequence: AATGATAACGATTATCAGT
Locus tag: BMD_0872
BMD_0872 -67 6 AATGATAACGATTATCAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhfQ
Ortholog function: Putative iron(III) dicitrate-binding lipoprotein
Bacillus subtilis subsp. subtilis str. 168 BSU10330 -82 5.7 GGTGATAATGATTCTCATT
Bacillus amyloliquefaciens FZB42 RBAM_010510 -72 6.4 AATGATAATGAATATCATT
Bacillus licheniformis DSM 13 BLi01111 -77 6.7 AATGATAATGATTATCATT
Position: -33
Score: 6.5
Sequence: ATTGAAAATGATTATCATT
Position: -27
Score: 4.9
Sequence: AATGATTATCATTAACAGG
Locus tag: BMD_0897
BMD_0897 -33 6.5 ATTGAAAATGATTATCATT
-27 4.9 AATGATTATCATTAACAGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron uptake system protein A
Bacillus licheniformis DSM 13 BLi04266 -42 5.9 TATGATAACGATTATCATT
Anoxybacillus flavithermus WK1 Aflv_0305 -38 5.6 ATTGAAAAAGGTTATCATT
Geobacillus kaustophilus HTA426 GK1849 -59 4.8 ATTGAGAAAAAGAATCATT
Bacillus cereus ATCC 14579 BC4807 -39 5.9 TTTGAAAATAATTATCATT
Position: -290
Score: 4.1
Sequence: AGTGATTTTTATTATAGCT
Locus tag: BMD_1140
BMD_1140 -290 4.1 AGTGATTTTTATTATAGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nasD
Ortholog function: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Bacillus halodurans C-125 BH0613 -62 4.1 ACTAATTATAATAATCAGA
Position: -333
Score: 6.2
Sequence: AATGATAAAGATTATCAAT
Locus tag: BMD_1440
BMD_1440 -333 6.2 AATGATAAAGATTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ypbR
Ortholog function: Putative GTP-binding protein
Bacillus subtilis subsp. subtilis str. 168 BSU22030 -333 5.7 ATTGAAAATCATTCTCAAC
-300 5.4 TTTGAAAAAGATTCTCAAT
Bacillus amyloliquefaciens FZB42 RBAM_020180 -349 6.2 ATTGAAAATCATTCTCAAT
-314 5.8 TATGAAAATGATTCTCATT
Bacillus pumilus SAFR-032 BPUM_1939 -303 6.5 ATTGAAAATCATTATCAAT
-267 5.8 AATGATAAGCATTCTCAAT
Bacillus licheniformis DSM 13 BLi02343 -307 6.5 ATTGAAAATGATTATCATT
-277 5.4 GATGATAAACATTCTCATT
Bacillus cereus ATCC 14579 BC1572 -358 5.4 GTTGATAATGATTCTCTTT
-319 6.1 AGTGATAATCATTATCAAA
Position: -86
Score: 6
Sequence: AGTGAGAATGATTTTCAAT
Locus tag: BMD_2414
BMD_2414 -86 6 AGTGAGAATGATTTTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfhC
Ortholog function: Putative nitroreductase family protein
Bacillus subtilis subsp. subtilis str. 168 BSU08480 -40 6.5 AATGATAATCATTTTCAAT
Bacillus amyloliquefaciens FZB42 RBAM_008550 -40 6.5 AATGATAATCATTTTCATT
Bacillus pumilus SAFR-032 BPUM_0791 -45 5.9 AATGAGAATCAATTTCAAT
Bacillus licheniformis DSM 13 BLi00873 -33 6.5 AATGATAATCATTTTCATT
Bacillus cereus ATCC 14579 BC0786 -67 6.2 ATTGAAAATCAATATCAAT
Bacillus halodurans C-125 BH0303 -91 6.1 TTTGAAAATGATTATCATT
Bacillus clausii KSM-K16 ABC0928 -80 5.6 AATGAAAATGAGAATCATT
Oceanobacillus iheyensis HTE831 OB0528 -41 6.5 ATTGATAATAATTATCAAT
Position: -116
Score: 6.3
Sequence: AGTGATAATGATTTTCATT
Locus tag: BMD_2762
BMD_2762 -116 6.3 AGTGATAATGATTTTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: efeU
Ortholog function: ferrous ion permease
Bacillus subtilis subsp. subtilis str. 168 BSU38280 -34 6.5 AATGATAATCATTTTCAAT
Paenibacillus sp. JDR-2 Pjdr2_0997 -84 6.2 ATTGACAATGATTATCATT
Position: -78
Score: 6.4
Sequence: ATTGATAATGATAATCATT
Locus tag: BMD_3219
BMD_3219 -78 6.4 ATTGATAATGATAATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yclN
Ortholog function: Iron compound ABC uptake transporter permease protein
Bacillus subtilis subsp. subtilis str. 168 BSU03800 -98 6.4 AATGATAATGATAATCAAT
-92 4.9 AATGATAATCAATTACTAT
Bacillus amyloliquefaciens FZB42 RBAM_004050 -87 5.9 GTTGATAATGATAATCATT
Bacillus pumilus SAFR-032 BPUM_0984 -57 6.4 ATTGATAATGATAATCATT
Bacillus licheniformis DSM 13 BLi00463 -46 6.4 ATTGATAATGATaATCAtT
Bacillus cereus ATCC 14579 BC5105 -107 6.5 AATGAAAATGATTATCAAT
Bacillus halodurans C-125 BH1025 -71 6.1 AATGATAATGCTTATCATT
-49 6.2 ACTGATAATGATTATCACT
Bacillus clausii KSM-K16 ABC2895 -129 4.5 AGCGAGATTCTTTCTCATT
-68 6.2 ATTGATAATGAGTATCATT
Oceanobacillus iheyensis HTE831 OB0539 -61 5.2 CTTAATAATGATAATCATT
-55 6.5 AATGATAATCATTTTCAAT
Position: -76
Score: 6.5
Sequence: AGTGATAATCATTATCATT
Position: -41
Score: 6.5
Sequence: AATGAAAATCATTATCAAT
Locus tag: BMD_4054
BMD_4054 -76 6.5 AGTGATAATCATTATCATT
-41 6.5 AATGAAAATCATTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dat
Ortholog function: Siderophore biosynthesis diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76)
Bacillus pumilus SAFR-032 BPUM_1019 -36 6.2 AATGATAATCTTTATCAAT
Bacillus licheniformis DSM 13 BLi01183 -35 6.2 AATGATAATCTTTATCAAT
Bacillus halodurans C-125 BH2624 -100 5.9 GATGATTATCATTATCAAT
-59 6.5 AATGATAATCATTATCACT
Position: -139
Score: 5.1
Sequence: TTTGATAAGCATTCTCAGT
Locus tag: BMD_4349
BMD_4349 -139 5.1 TTTGATAAGCATTCTCAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fer
Ortholog function: Ferredoxin
Bacillus subtilis subsp. subtilis str. 168 BSU23040 -142 5.2 TGTGATAAGCATTCTCAAT
Bacillus amyloliquefaciens FZB42 RBAM_021190 -141 5.2 TGTGATAAGCATTCTCAAT
Bacillus pumilus SAFR-032 BPUM_2037 -146 5.2 TGTGATAAGCATTCTCATT
Bacillus cereus ATCC 14579 BC1483 -116 6.1 ATTGATAAGCATTATCATT
Position: -160
Score: 6.3
Sequence: AGTGATAATGATTTTCATT
Position: -96
Score: 5.8
Sequence: ATTGAAAATGATTCTCAAA
Locus tag: BMD_4999
BMD_4999 -160 6.3 AGTGATAATGATTTTCATT
-96 5.8 ATTGAAAATGATTCTCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfiZ
Ortholog function: Iron(III) siderophore transport permease
Bacillus subtilis subsp. subtilis str. 168 BSU08450 -115 6.2 ATTGAAATTCATTATCATT
-58 4.9 ATTGAGGATTATTCTCAAA
Bacillus licheniformis DSM 13 BLi03474 -81 5.8 ATTGAAAATGATTTTCAAG
Anoxybacillus flavithermus WK1 Aflv_1267 -153 5.4 TTTGAAAATGATTTTCGTT
-113 6.2 AATGATAATCATTGTCAAT
-29 4.9 ACTGATATTCGATATCAAA
Geobacillus kaustophilus HTA426 GK1459 -181 5.8 TTTGATAATGAATTTCATT
-141 5.2 AGTGAGAATCATTGTCAAC
-68 5 GATGAGAGTCATTATCAAA
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