Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Bacillus amyloliquefaciens FZB42

Reference regulog properties
Source regulog: Fur - Bacillales
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus amyloliquefaciens FZB42
Orthologous TF(s) RBAM_021640
Regulated genes 21
Built upon 200 sites [see more]
Predicted regulatory interactions in Bacillus amyloliquefaciens FZB42
Locus tag Position Score Sequence
Position: -38
Score: 6.1
Sequence: ATTGATAATAGTTATCAAT
Locus tag: RBAM_002120
RBAM_002120 -38 6.1 ATTGATAATAGTTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: feuA
Ortholog function: Fe3+-bacillibactin ABC transporter substrate-binding protein
Bacillus subtilis subsp. subtilis str. 168 BSU01630 -38 6.1 ATTGATAATAGTTATCAAT
Bacillus amyloliquefaciens FZB42 RBAM_002120 -38 6.1 ATTGATAATAGTTATCAAT
Bacillus pumilus SAFR-032 BPUM_3701 -34 5.5 ATTGAGAACAATTATCAGT
Bacillus licheniformis DSM 13 BLi03906 -302 5.1 TATCATTATGATTTTCATT
-41 6.1 ATTGATAATAGTTATCAAT
Position: -50
Score: 5.6
Sequence: AATGATAACAGTTATCATT
Locus tag: RBAM_002130
RBAM_002130 -50 5.6 AATGATAACAGTTATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: btr
Ortholog function: Transcriptional regulator of Fe-bacillibactin uptake, AraC family
Bacillus subtilis subsp. subtilis str. 168 BSU01640 -47 6.5 ATTGAAAATGATTATCAAT
Bacillus amyloliquefaciens FZB42 RBAM_002130 -50 5.6 AATGATAACAGTTATCATT
Bacillus pumilus SAFR-032 BPUM_3700 -196 5.6 TTTGATATTGATAATCATT
-190 6.3 ATTGATAATCATTTTCACT
Bacillus clausii KSM-K16 ABC3488 -37 6.7 ATTGATAATGATTATCAAT
Position: -60
Score: 6.1
Sequence: ATTGATATTGATTCTCAAT
Locus tag: RBAM_003480
RBAM_003480 -60 6.1 ATTGATATTGATTCTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycgT
Ortholog function: Thioredoxin reductase (EC 1.8.1.9)
Bacillus subtilis subsp. subtilis str. 168 BSU03270 -57 6.1 ATTGATATTCATTCTCAAT
Bacillus amyloliquefaciens FZB42 RBAM_003480 -60 6.1 ATTGATATTGATTCTCAAT
Position: -87
Score: 5.9
Sequence: GTTGATAATGATAATCATT
Locus tag: RBAM_004050
RBAM_004050 -87 5.9 GTTGATAATGATAATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yclN
Ortholog function: Iron compound ABC uptake transporter permease protein
Bacillus subtilis subsp. subtilis str. 168 BSU03800 -98 6.4 AATGATAATGATAATCAAT
-92 4.9 AATGATAATCAATTACTAT
Bacillus amyloliquefaciens FZB42 RBAM_004050 -87 5.9 GTTGATAATGATAATCATT
Bacillus pumilus SAFR-032 BPUM_0984 -57 6.4 ATTGATAATGATAATCATT
Bacillus licheniformis DSM 13 BLi00463 -46 6.4 ATTGATAATGATaATCAtT
Bacillus cereus ATCC 14579 BC5105 -107 6.5 AATGAAAATGATTATCAAT
Bacillus halodurans C-125 BH1025 -71 6.1 AATGATAATGCTTATCATT
-49 6.2 ACTGATAATGATTATCACT
Bacillus clausii KSM-K16 ABC2895 -129 4.5 AGCGAGATTCTTTCTCATT
-68 6.2 ATTGATAATGAGTATCATT
Oceanobacillus iheyensis HTE831 OB0539 -61 5.2 CTTAATAATGATAATCATT
-55 6.5 AATGATAATCATTTTCAAT
Position: -208
Score: 6.1
Sequence: ACTGATAATGATTCTCAAT
Locus tag: RBAM_004860
RBAM_004860 -208 6.1 ACTGATAATGATTCTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydbN
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU04530 -164 6.7 ATTGATAATGATTATCAAT
Bacillus amyloliquefaciens FZB42 RBAM_004860 -208 6.1 ACTGATAATGATTCTCAAT
Bacillus pumilus SAFR-032 BPUM_0425 -74 6.5 ATTGAAAATGATTATCAAT
Bacillus licheniformis DSM 13 BLi00541 -207 6.7 ATTGATAATGATTATCAAT
Position: -47
Score: 5.8
Sequence: TTTGAGAATCATTTTCATT
Locus tag: RBAM_007300
RBAM_007300 -47 5.8 TTTGAGAATCATTTTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yetG
Ortholog function: Putative monooxygenase
Bacillus amyloliquefaciens FZB42 RBAM_007300 -47 5.8 TTTGAGAATCATTTTCATT
Bacillus cereus ATCC 14579 BC2969 -65 5.9 ATTGAAAATAATTATCATA
-59 4.8 AATAATTATCATAATCAAC
Bacillus halodurans C-125 BH3883 -54 6 TTTGATAATGATAATCAAT
-48 6 AATGATAATCAATATCAAA
Bacillus clausii KSM-K16 ABC1946 -52 6 AATGAGAATCGTTATCAAT
Position: -40
Score: 6.5
Sequence: AATGATAATCATTTTCATT
Locus tag: RBAM_008550
RBAM_008550 -40 6.5 AATGATAATCATTTTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfhC
Ortholog function: Putative nitroreductase family protein
Bacillus subtilis subsp. subtilis str. 168 BSU08480 -40 6.5 AATGATAATCATTTTCAAT
Bacillus amyloliquefaciens FZB42 RBAM_008550 -40 6.5 AATGATAATCATTTTCATT
Bacillus pumilus SAFR-032 BPUM_0791 -45 5.9 AATGAGAATCAATTTCAAT
Bacillus licheniformis DSM 13 BLi00873 -33 6.5 AATGATAATCATTTTCATT
Bacillus cereus ATCC 14579 BC0786 -67 6.2 ATTGAAAATCAATATCAAT
Bacillus halodurans C-125 BH0303 -91 6.1 TTTGAAAATGATTATCATT
Bacillus clausii KSM-K16 ABC0928 -80 5.6 AATGAAAATGAGAATCATT
Oceanobacillus iheyensis HTE831 OB0528 -41 6.5 ATTGATAATAATTATCAAT
Position: -72
Score: 6.4
Sequence: AATGATAATGAATATCATT
Locus tag: RBAM_010510
RBAM_010510 -72 6.4 AATGATAATGAATATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhfQ
Ortholog function: Putative iron(III) dicitrate-binding lipoprotein
Bacillus subtilis subsp. subtilis str. 168 BSU10330 -82 5.7 GGTGATAATGATTCTCATT
Bacillus amyloliquefaciens FZB42 RBAM_010510 -72 6.4 AATGATAATGAATATCATT
Bacillus licheniformis DSM 13 BLi01111 -77 6.7 AATGATAATGATTATCATT
Position: -70
Score: 6.5
Sequence: AATGAAAATCATTATCATT
Position: -33
Score: 6.5
Sequence: AATGAAAATCATTATCAAT
Locus tag: RBAM_013920
RBAM_013920 -70 6.5 AATGAAAATCATTATCATT
-33 6.5 AATGAAAATCATTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ykuN
Ortholog function: Flavodoxin
Bacillus subtilis subsp. subtilis str. 168 BSU14150 -71 6.5 AATGAAAATCATTATCATT
-34 6 ATTGAAAATCATTATCAAC
Bacillus amyloliquefaciens FZB42 RBAM_013920 -70 6.5 AATGAAAATCATTATCATT
-33 6.5 AATGAAAATCATTATCAAT
Bacillus pumilus SAFR-032 BPUM_1312 -75 6.5 AATGAAAATCATTATCATT
-38 6.5 ATTGAAAATGATTATCATT
Bacillus cereus ATCC 14579 BC3541 -48 5.9 ATTGAAATTGATTCTCATT
-21 5.5 AATGAGAATGAGAATCATT
Bacillus clausii KSM-K16 ABC1100 -63 6.5 ATTGAAAATGATTATCAAT
-57 6 AATGATTATCAATATCATT
Position: -111
Score: 5.3
Sequence: ATTGATTCTTATTCTCAAT
Locus tag: RBAM_016850
RBAM_016850 -111 5.3 ATTGATTCTTATTCTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: miaB
Ortholog function: (dimethylallyl)adenosine tRNA methylthiotransferase
Bacillus subtilis subsp. subtilis str. 168 BSU17010 -110 5.8 ATTGATTATTATTCTCAAT
Bacillus amyloliquefaciens FZB42 RBAM_016850 -111 5.3 ATTGATTCTTATTCTCAAT
Bacillus licheniformis DSM 13 BLi01925 -108 6.2 ATTGATAATCATTTTCAGT
Position: -349
Score: 6.2
Sequence: ATTGAAAATCATTCTCAAT
Position: -314
Score: 5.8
Sequence: TATGAAAATGATTCTCATT
Locus tag: RBAM_020180
RBAM_020180 -349 6.2 ATTGAAAATCATTCTCAAT
-314 5.8 TATGAAAATGATTCTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ypbR
Ortholog function: Putative GTP-binding protein
Bacillus subtilis subsp. subtilis str. 168 BSU22030 -333 5.7 ATTGAAAATCATTCTCAAC
-300 5.4 TTTGAAAAAGATTCTCAAT
Bacillus amyloliquefaciens FZB42 RBAM_020180 -349 6.2 ATTGAAAATCATTCTCAAT
-314 5.8 TATGAAAATGATTCTCATT
Bacillus pumilus SAFR-032 BPUM_1939 -303 6.5 ATTGAAAATCATTATCAAT
-267 5.8 AATGATAAGCATTCTCAAT
Bacillus licheniformis DSM 13 BLi02343 -307 6.5 ATTGAAAATGATTATCATT
-277 5.4 GATGATAAACATTCTCATT
Bacillus cereus ATCC 14579 BC1572 -358 5.4 GTTGATAATGATTCTCTTT
-319 6.1 AGTGATAATCATTATCAAA
Position: -141
Score: 5.2
Sequence: TGTGATAAGCATTCTCAAT
Locus tag: RBAM_021190
RBAM_021190 -141 5.2 TGTGATAAGCATTCTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fer
Ortholog function: Ferredoxin
Bacillus subtilis subsp. subtilis str. 168 BSU23040 -142 5.2 TGTGATAAGCATTCTCAAT
Bacillus amyloliquefaciens FZB42 RBAM_021190 -141 5.2 TGTGATAAGCATTCTCAAT
Bacillus pumilus SAFR-032 BPUM_2037 -146 5.2 TGTGATAAGCATTCTCATT
Bacillus cereus ATCC 14579 BC1483 -116 6.1 ATTGATAAGCATTATCATT
Position: -53
Score: 6.7
Sequence: AATGATAATCATTATCAAT
Locus tag: RBAM_029050
RBAM_029050 -53 6.7 AATGATAATCATTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dhbA
Ortholog function: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28)
Bacillus subtilis subsp. subtilis str. 168 BSU32000 -121 4.6 TATGATTATTTTTATAATT
-99 6.7 AATGATAATCATTATCAAT
Bacillus amyloliquefaciens FZB42 RBAM_029050 -53 6.7 AATGATAATCATTATCAAT
Bacillus licheniformis DSM 13 BLi03902 -88 6.4 AATGATTATCATTATCAAT
Bacillus cereus ATCC 14579 BC2302 -158 6 AATGAAAAACATTATCAAT
-64 6.2 AATGAAAATCAATATCATT
Oceanobacillus iheyensis HTE831 OB0954 -107 6.7 AATGATAATCATTATCATT
-37 6.4 ATTGAGAATGATTATCAAT
Position: -61
Score: 6.5
Sequence: ATTGAAAATCATTATCAAT
Locus tag: RBAM_029060
RBAM_029060 -61 6.5 ATTGAAAATCATTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: besA
Ortholog function: Trilactone hydrolase [bacillibactin] siderophore
Bacillus subtilis subsp. subtilis str. 168 BSU32010 -57 5.9 AGTGAAAATCATTATCATA
Bacillus amyloliquefaciens FZB42 RBAM_029060 -61 6.5 ATTGAAAATCATTATCAAT
Bacillus licheniformis DSM 13 BLi03903 -302 5.1 TATCATTATGATTTTCATT
-41 6.1 ATTGATAATAGTTATCAAT
Position: -35
Score: 5.2
Sequence: ATTAATAACAATTTTCAAT
Locus tag: RBAM_029160
RBAM_029160 -35 5.2 ATTAATAACAATTTTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yumC
Ortholog function: Ferredoxin--NADP reductase 2
Bacillus subtilis subsp. subtilis str. 168 BSU32110 -36 5.2 ATTAATAACAATTTTCATT
Bacillus amyloliquefaciens FZB42 RBAM_029160 -35 5.2 ATTAATAACAATTTTCAAT
Bacillus pumilus SAFR-032 BPUM_2873 -35 5.6 AGTGATAACAATTTTCATT
Bacillus licheniformis DSM 13 BLi03393 -36 4.9 ATTAAGAACAATTTTCATT
Bacillus clausii KSM-K16 ABC2925 -39 4.9 AATGAGAAAGGATTTCATT
Oceanobacillus iheyensis HTE831 OB2351 -324 5 TATCATTTTCATTATCAAT
Position: -124
Score: 5.5
Sequence: ATTGATAATGATATTCAGA
Locus tag: RBAM_030060
RBAM_030060 -124 5.5 ATTGATAATGATATTCAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yusV
Ortholog function: Iron(III)-siderophore transporter (ATP binding component)
Bacillus subtilis subsp. subtilis str. 168 BSU32940 -171 5.9 ATTGAAAATGATTTTCAAA
Bacillus amyloliquefaciens FZB42 RBAM_030060 -124 5.5 ATTGATAATGATATTCAGA
Bacillus pumilus SAFR-032 BPUM_2949 -126 5.9 ATTGAAAATGATTTTCAAA
Bacillus licheniformis DSM 13 BLi03472 -81 5.8 ATTGAAAATGATTTTCAAG
Anoxybacillus flavithermus WK1 Aflv_1269 -153 5.4 TTTGAAAATGATTTTCGTT
-113 6.2 AATGATAATCATTGTCAAT
-29 4.9 ACTGATATTCGATATCAAA
Oceanobacillus iheyensis HTE831 OB0450 -93 6.3 ATTGAAAATTATTATCATT
Paenibacillus sp. JDR-2 Pjdr2_4368 -170 5 GATGATAATATTTCTCACT
-111 5.2 TTTGATAACGATTCTCATA
Position: -185
Score: 5.5
Sequence: AAAGAGAATCATTATCAGT
Position: -49
Score: 6.7
Sequence: ATTGATAATCATTATCATT
Locus tag: RBAM_030430
RBAM_030430 -185 5.5 AAAGAGAATCATTATCAGT
-49 6.7 ATTGATAATCATTATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fhuB
Ortholog function: Ferrichrome transport system permease protein FhuB (TC 3.A.1.14.3)
Bacillus subtilis subsp. subtilis str. 168 BSU33310 -65 5.3 AAAGAGAATCATTATCATC
Bacillus amyloliquefaciens FZB42 RBAM_030430 -185 5.5 AAAGAGAATCATTATCAGT
-49 6.7 ATTGATAATCATTATCATT
Bacillus pumilus SAFR-032 BPUM_2992 -234 6 TATGATAATGATTCTCAAT
-58 6.7 ATTGATAATCATTATCATT
Bacillus licheniformis DSM 13 BLi03521 -46 5.5 AATGATAATCGTTATCGGT
Bacillus halodurans C-125 BH1083 -51 6.5 AGTGATAATGATTATCAAT
Position: -187
Score: 6.7
Sequence: AATGATAATGATTATCAAT
Locus tag: RBAM_030440
RBAM_030440 -187 6.7 AATGATAATGATTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fhuD
Ortholog function: Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3)
Bacillus subtilis subsp. subtilis str. 168 BSU33320 -184 6.4 ACTGATAATGATTATCAAT
-51 5.3 GATGATAATGATTCTCTTT
Bacillus amyloliquefaciens FZB42 RBAM_030440 -187 6.7 AATGATAATGATTATCAAT
-51 5.5 ACTGATAATGATTCTCTTT
Bacillus pumilus SAFR-032 BPUM_2994 -220 6.7 AATGATAATGATTATCAAT
-44 6 ATTGAGAATCATTATCATA
Bacillus licheniformis DSM 13 BLi02658 -53 5.8 ATTGATAATGATTCTCTTT
Position: -47
Score: 5.7
Sequence: ATTGAGAAATATTATCATT
Locus tag: RBAM_034370
RBAM_034370 -47 5.7 ATTGAGAAATATTATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywjA
Ortholog function: Multidrug resistance ABC transporter ATP-binding and permease protein
Bacillus subtilis subsp. subtilis str. 168 BSU37230 -44 5.4 ATTGAGAAATATTATCAGT
Bacillus amyloliquefaciens FZB42 RBAM_034370 -47 5.7 ATTGAGAAATATTATCATT
Bacillus pumilus SAFR-032 BPUM_3379 -46 6.5 ATTGAAAATGATTATCAAT
Bacillus cereus ATCC 14579 BC5182 -57 5.9 TTTGATAATGGTTATCATT
Bacillus halodurans C-125 BH3891 -52 6.1 ATTGAGAATGAATATCAAT
Paenibacillus sp. JDR-2 Pjdr2_0424 -137 5.9 TATGATAATGATTATCAAC
Position: -42
Score: 5.7
Sequence: ATTAATAATGATAATCATT
Position: -36
Score: 6.5
Sequence: AATGATAATCATTATCACT
Locus tag: RBAM_036560
RBAM_036560 -42 5.7 ATTAATAATGATAATCATT
-36 6.5 AATGATAATCATTATCACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yxeB
Ortholog function: Fe3+-hydroxamate ABC transporter substrate-binding protein
Bacillus subtilis subsp. subtilis str. 168 BSU39610 -55 6.4 ATTGATAATGATAATCATT
Bacillus amyloliquefaciens FZB42 RBAM_036560 -36 6.5 AATGATAATCATTATCACT
Bacillus licheniformis DSM 13 BLi04262 -58 5.6 AATGCGAATCATTATCACT
Bacillus clausii KSM-K16 ABC3476 -49 5.8 GGTGATAATGATTTTCATT
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