Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Bacillus amyloliquefaciens FZB42

Reference regulog properties
Source regulog: CcpA - Bacillales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus amyloliquefaciens FZB42
Orthologous TF(s) RBAM_026860
Regulated genes 71
Built upon 559 sites [see more]
Predicted regulatory interactions in Bacillus amyloliquefaciens FZB42
Locus tag Position Score Sequence
Position: -32
Score: 4.1
Sequence: TTGTAAACGAATACAC
Locus tag: RBAM_001800
RBAM_001800 -32 4.1 TTGTAAACGAATACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: mrp
Ortholog function: Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like
Anoxybacillus flavithermus WK1 Aflv_0142 -34 4 GTGAAACCGAATACAT
Bacillus amyloliquefaciens FZB42 RBAM_001800 -32 4.1 TTGTAAACGAATACAC
Bacillus cereus ATCC 14579 BC0168 -84 4.5 ATGTAAACGCATTTAT
Bacillus licheniformis DSM 13 BLi00172 -31 4.5 TTGTAAACGAATACAA
Bacillus pumilus SAFR-032 BPUM_0145 -35 4.6 TTGTAAACGAATTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU01540 -32 4.1 TTGTAAACGAATACAC
Position: -162
Score: 4.9
Sequence: AAGAAAGCGCTATCAT
Locus tag: RBAM_002610
RBAM_002610 -162 4.9 AAGAAAGCGCTATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpT
Ortholog function: MFS family major facilitator transporter, glycerol-3-phosphate:cation symporter
Bacillus amyloliquefaciens FZB42 RBAM_002610 -200 4.3 CTTAAAGCGTTTACAT
-162 4.9 AAGAAAGCGCTATCAT
Bacillus pumilus SAFR-032 BPUM_0182 -104 4.9 AAGAAAGCGTTATCAA
Bacillus subtilis subsp. subtilis str. 168 BSU02140 -159 4.9 AAGAAAGCGCTATCAT
Position: -62
Score: 5
Sequence: TTGAAAACGTTTTCCA
Locus tag: RBAM_002800
RBAM_002800 -62 5 TTGAAAACGTTTTCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glsA1
Ortholog function: Glutaminase (EC 3.5.1.2)
Bacillus amyloliquefaciens FZB42 RBAM_002800 -62 5 TTGAAAACGTTTTCCA
Bacillus halodurans C-125 BH2717 -32 5.3 ATGTAAACGCTTTCAT
Bacillus licheniformis DSM 13 BLi00274 -208 4.9 TTGAAAACGCTTATAT
Bacillus pumilus SAFR-032 BPUM_0244 -216 5.2 ATGTAAGCGTTTTCTT
Bacillus subtilis subsp. subtilis str. 168 BSU02430 -81 4.4 ATGAAAGCGTTTAACG
Position: -118
Score: 4.9
Sequence: ATGTAAGCGTTAACAG
Locus tag: RBAM_003280
RBAM_003280 -118 4.9 ATGTAAGCGTTAACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: amyE
Ortholog function: Alpha-amylase precursor
Bacillus amyloliquefaciens FZB42 RBAM_003280 -118 4.9 ATGTAAGCGTTAACAG
Bacillus subtilis subsp. subtilis str. 168 BSU03040 -125 5.1 ATGTAAGCGTTAACAA
Position: -96
Score: 4.6
Sequence: TTGTAAGCGTTTTATG
Locus tag: RBAM_004230
RBAM_004230 -96 4.6 TTGTAAGCGTTTTATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtlA
Ortholog function: PTS family mannitol-permease II, BC component
Anoxybacillus flavithermus WK1 Aflv_1566 -58 4.5 CTGTAAGCGCTTTAAT
Bacillus amyloliquefaciens FZB42 RBAM_004230 -96 4.6 TTGTAAGCGTTTTATG
Bacillus halodurans C-125 BH3854 -39 4.3 ATGAGAGCGCTTTATT
Bacillus licheniformis DSM 13 BLi00505 -94 4.4 CTGTAAGCGTTTTAAT
Bacillus pumilus SAFR-032 BPUM_0369 -106 4.1 GTGAAAGCGTTTTACG
Bacillus subtilis subsp. subtilis str. 168 BSU03981 -95 4 CTGTAAGCGTTTTAAC
Geobacillus kaustophilus HTA426 GK1948 -54 4.8 TTGTAAGCGTTTTAAG
Oceanobacillus iheyensis HTE831 OB2603 -75 4.4 TTGTAAGCGGATTCCT
Paenibacillus sp. JDR-2 Pjdr2_6226 -33 4.1 AAGAAAGCGATTTTAT
Position: -96
Score: 5
Sequence: TTGAAAGCGTTTTATA
Locus tag: RBAM_004390
RBAM_004390 -96 5 TTGAAAGCGTTTTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtlR
Ortholog function: Mannitol operon activator, BglG family
Anoxybacillus flavithermus WK1 Aflv_1564 -65 4.4 TTGAAAGCGGATGAAT
Bacillus amyloliquefaciens FZB42 RBAM_004390 -96 5 TTGAAAGCGTTTTATA
Bacillus halodurans C-125 BH3853 -39 4.3 ATGAGAGCGCTTTATT
Bacillus licheniformis DSM 13 BLi00508 -96 4.2 TTGACAGCGTTTTATG
Bacillus pumilus SAFR-032 BPUM_0388 -60 5 TTGAAAGCGTTTTATA
Bacillus subtilis subsp. subtilis str. 168 BSU04160 -99 5 TTGAAAGCGTTTTATA
Oceanobacillus iheyensis HTE831 OB2602 -75 4.4 TTGTAAGCGGATTCCT
Paenibacillus sp. JDR-2 Pjdr2_6225 -33 4.1 AAGAAAGCGATTTTAT
Position: -54
Score: 5.3
Sequence: TTGAAAACGCTATCAT
Locus tag: RBAM_004800
RBAM_004800 -54 5.3 TTGAAAACGCTATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dctA
Ortholog function: C4-dicarboxylate transport protein
Bacillus amyloliquefaciens FZB42 RBAM_004800 -54 5.3 TTGAAAACGCTATCAT
Bacillus pumilus SAFR-032 BPUM_0419 -72 4.8 TTGAAATCGCTATCAT
Bacillus subtilis subsp. subtilis str. 168 BSU04470 -64 5.3 ATGAAAACGCTATCAT
Position: -196
Score: 5
Sequence: ATGAAAACGCTACCAA
Locus tag: RBAM_007070
RBAM_007070 -196 5 ATGAAAACGCTACCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gatC
Ortholog function: Aspartyl (EC 6.3.5.6)/Glutamyl (EC 6.3.5.7) -tRNA amidotransferase subunit C
Bacillus amyloliquefaciens FZB42 RBAM_007070 -196 5 ATGAAAACGCTACCAA
Bacillus licheniformis DSM 13 BLi00730 -200 5.5 ATGAAAGCGTTTACAA
Bacillus pumilus SAFR-032 BPUM_0644 -215 5 ATGTAAGCGCTACCAA
Bacillus subtilis subsp. subtilis str. 168 BSU06670 -205 4.4 AATAAAACGCTTTCAA
Position: -33
Score: 5.1
Sequence: ATGTAAGCGTATTCAT
Locus tag: RBAM_007810
RBAM_007810 -33 5.1 ATGTAAGCGTATTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: citM
Ortholog function: Mg(2+) Citrate transporter (TC 2.A.11.1.1)
Bacillus amyloliquefaciens FZB42 RBAM_007810 -33 5.1 ATGTAAGCGTATTCAT
Bacillus licheniformis DSM 13 BLi00221 -33 4.9 ATGTAAGCGGATTCAT
Bacillus pumilus SAFR-032 BPUM_0710 -33 5.2 ATGAAAGCGTATACAA
Bacillus subtilis subsp. subtilis str. 168 BSU07610 -32 4.9 ATGTAAGCGGATTCAT
Position: -115
Score: 5.1
Sequence: ATGAAAGCGCTATAAA
Position: -26
Score: 4.4
Sequence: ATGAAAACGGTTACGG
Locus tag: RBAM_007970
RBAM_007970 -115 5.1 ATGAAAGCGCTATAAA
-26 4.4 ATGAAAACGGTTACGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: treP
Ortholog function: PTS system, trehalose-specific enzyme II, BC component (EC 2.7.1.69)
Bacillus amyloliquefaciens FZB42 RBAM_007970 318 4 GTGAAAACGCTTGCGG
Bacillus cereus ATCC 14579 BC0631 234 4.4 TTGATAACGCTTGCAG
Bacillus halodurans C-125 BH2216 136 4.4 TTGAAAGCCTTGACAT
318 4.4 GTGAAAACGCTTGCTG
Bacillus licheniformis DSM 13 BLi00796 318 4.6 GTGAAAACGCTTGCAG
Bacillus subtilis subsp. subtilis str. 168 BSU07800 318 4.6 GTGAAAACGCTTGCAG
Position: -67
Score: 5
Sequence: TTGAAAGCGCTTTATT
Locus tag: RBAM_008340
RBAM_008340 -67 5 TTGAAAGCGCTTTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acoR
Ortholog function: Transcriptional activator of acetoin dehydrogenase operon AcoR
Bacillus amyloliquefaciens FZB42 RBAM_008340 -67 5 TTGAAAGCGCTTTATT
Bacillus cereus ATCC 14579 BC2766 -78 5 TTGAAAACGCTTTTAT
Bacillus halodurans C-125 BH1826 -117 4.7 TTGTTAGCGCTTTCTT
Bacillus licheniformis DSM 13 BLi00853 -51 5.1 TTGAAAGCGCTTTTAT
Bacillus pumilus SAFR-032 BPUM_0455 -59 5.1 TTGAAAGCGCTTTTAT
Bacillus subtilis subsp. subtilis str. 168 BSU08100 -67 5 TTGAAAGCGCTTTATT
Position: -29
Score: 4.8
Sequence: ATGTAAACGTTATCAG
Locus tag: RBAM_008360
RBAM_008360 -29 4.8 ATGTAAACGTTATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: glvA
Ortholog function: Maltose-6'-phosphate glucosidase (EC 3.2.1.122)
Bacillus amyloliquefaciens FZB42 RBAM_008360 -29 4.8 ATGTAAACGTTATCAG
Bacillus clausii KSM-K16 ABC3581 -54 4.8 TTGAAAGCGCTGCCTT
Bacillus licheniformis DSM 13 BLi00855 -29 4.8 TTGTAAACGCTTATAA
Bacillus subtilis subsp. subtilis str. 168 BSU08180 -28 5.1 TTGTAAACGTTATCAA
Position: -29
Score: 4.9
Sequence: ATGTAAGCGGATTCAA
Locus tag: RBAM_010120
RBAM_010120 -29 4.9 ATGTAAGCGGATTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhaR
Ortholog function: Enoyl-CoA hydratase (EC 4.2.1.17)
Bacillus amyloliquefaciens FZB42 RBAM_010120 -29 4.9 ATGTAAGCGGATTCAA
Bacillus licheniformis DSM 13 BLi01062 -27 4.5 TTGTAAACGTATTCAC
Bacillus subtilis subsp. subtilis str. 168 BSU09880 -29 4.6 AAGTAAGCGCATACAT
Position: -38
Score: 4.5
Sequence: TTGTTAACGTTAACAT
Locus tag: RBAM_012380
RBAM_012380 -38 4.5 TTGTTAACGTTAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxaC
Ortholog function: Uronate isomerase (EC 5.3.1.12)
Bacillus amyloliquefaciens FZB42 RBAM_012380 -123 4.2 ATGTTAACGGATACAA
-38 4.5 TTGTTAACGTTAACAT
Bacillus licheniformis DSM 13 BLi03516 -75 4 ATGTTAACGTTCACAT
-43 4.5 TTGTTAACGTTAACAT
Bacillus pumilus SAFR-032 BPUM_2987 -73 4.8 TTGTAAACGATTACAA
Bacillus subtilis subsp. subtilis str. 168 BSU12300 -123 4.8 ATGACAGCGTTAACAT
-45 4.5 ATGTTAACGTTAACAT
Position: -51
Score: 4.6
Sequence: TTGTAAGGGTTTACAT
Locus tag: RBAM_013160
RBAM_013160 -51 4.6 TTGTAAGGGTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ykoM
Ortholog function: Putative transcriptional regulator, MarR family
Bacillus amyloliquefaciens FZB42 RBAM_013160 -51 4.6 TTGTAAGGGTTTACAT
Bacillus licheniformis DSM 13 BLi01493 -59 4.7 TTGTAAGGGTTTTCAT
Bacillus pumilus SAFR-032 BPUM_1233 -104 4.9 TTGAAAGGGTTTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU13340 -51 4.7 ATGTAAGGGTTTTCAT
Position: -99
Score: 4.6
Sequence: AAGAAAACGCATACAT
Locus tag: RBAM_013910
RBAM_013910 -99 4.6 AAGAAAACGCATACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccpC
Ortholog function: Transcriptional regulators, LysR family
Bacillus amyloliquefaciens FZB42 RBAM_013910 -99 4.6 AAGAAAACGCATACAT
Bacillus cereus ATCC 14579 BC3982 -73 5.1 ATGAAAACGCTGTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU14140 -108 4.7 AAGAAAGCGCATACAT
Position: -60
Score: 4.5
Sequence: AAAAAAGCGTTTACAA
Position: -28
Score: 4.5
Sequence: ATGAATACGTTTCCAA
Locus tag: RBAM_014120
RBAM_014120 -60 4.5 AAAAAAGCGTTTACAA
-28 4.5 ATGAATACGTTTCCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fruR
Ortholog function: Transcriptional regulator of fructose utilization, DeoR family
Anoxybacillus flavithermus WK1 Aflv_1478 -24 4.6 ATGTAAGCGATTTAAA
Bacillus amyloliquefaciens FZB42 RBAM_014120 -28 4.5 ATGAATACGTTTCCAA
Bacillus cereus ATCC 14579 BC3720 -46 4.3 TTGTGACCGTTTTCAT
Bacillus licheniformis DSM 13 BLi01652 -29 4.6 ATGAAGGCGTTTCCAA
Bacillus pumilus SAFR-032 BPUM_1334 -30 4.7 ATGAATACGTTTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU14380 -29 4.7 ATGAATACGTTTTCAT
Oceanobacillus iheyensis HTE831 OB0840 -113 5 TTGAAAGCGTTTTATT
Position: -95
Score: 4.3
Sequence: ATGAAAGCGTTACACT
Locus tag: RBAM_014810
RBAM_014810 -95 4.3 ATGAAAGCGTTACACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ylbB
Ortholog function: CBS domain protein
Bacillus amyloliquefaciens FZB42 RBAM_014810 -95 4.3 ATGAAAGCGTTACACT
Bacillus licheniformis DSM 13 BLi01712 -142 4.5 ATGAAAGCGTTAAACT
Bacillus pumilus SAFR-032 BPUM_1387 -116 4.5 ATGAAAGCGTTAAACT
Bacillus subtilis subsp. subtilis str. 168 BSU14950 -97 4.5 ATGAAAGCGTTAAACT
Position: -46
Score: 4.9
Sequence: ATTAAAGCGTTTACAA
Locus tag: RBAM_014960
RBAM_014960 -46 4.9 ATTAAAGCGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ylbP
Ortholog function: Uncharacterized N-acetyltransferase (EC 2.3.1.-)
Bacillus amyloliquefaciens FZB42 RBAM_014960 -46 4.9 ATTAAAGCGTTTACAA
Bacillus clausii KSM-K16 ABC2369 -70 4.2 TTTAATGCGTTTTCAT
Bacillus licheniformis DSM 13 BLi01727 -48 4.5 AAAAAAGCGTTTACAA
Bacillus pumilus SAFR-032 BPUM_1403 -58 4.8 ATGAAAACGCCTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU15100 -48 4.4 AATAAAGCGTTTACAA
Oceanobacillus iheyensis HTE831 OB1458 -59 4.3 TAGGAAGCGTTATCTT
Position: -132
Score: 4.9
Sequence: TTGTAAACGCTTTAAT
Locus tag: RBAM_014970
RBAM_014970 -132 4.9 TTGTAAACGCTTTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: apbA
Ortholog function: 2-dehydropantoate 2-reductase (EC 1.1.1.169)
Bacillus amyloliquefaciens FZB42 RBAM_014970 -132 4.9 TTGTAAACGCTTTAAT
Bacillus clausii KSM-K16 ABC2368 -98 4.8 ATGAAAACGCATTAAA
Bacillus licheniformis DSM 13 BLi01728 -150 4.6 TTGTAAACGCTTTTTT
Bacillus pumilus SAFR-032 BPUM_1404 -166 4.8 TTGAAGGCGTTTTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU15110 -127 4.7 TTGTAAACGCTTTATT
Position: -52
Score: 4.8
Sequence: ATGAAAGCGCAGTCTA
Locus tag: RBAM_015920
RBAM_015920 -52 4.8 ATGAAAGCGCAGTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sucC
Ortholog function: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Bacillus amyloliquefaciens FZB42 RBAM_015920 -52 4.8 ATGAAAGCGCAGTCTA
Bacillus licheniformis DSM 13 BLi01829 -53 4.8 ATGAAAGCGCAGTCTA
Bacillus pumilus SAFR-032 BPUM_1507 -57 4.8 ATGAAAGCGCAGTCTA
Bacillus subtilis subsp. subtilis str. 168 BSU16090 -51 4.8 ATGAAAGCGCAGTCTA
Geobacillus kaustophilus HTA426 GK1208 -47 4.2 ATGAAAGCGCTAAGAC
Position: -104
Score: 5.1
Sequence: TTGAAAGCGCTTTTAT
Locus tag: RBAM_017320
RBAM_017320 -104 5.1 TTGAAAGCGCTTTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xynP
Ortholog function: Putative H+-xyloside symporter
Bacillus amyloliquefaciens FZB42 RBAM_017320 -104 5.1 TTGAAAGCGCTTTTAT
Bacillus pumilus SAFR-032 BPUM_1832 -90 5.1 TTGAAAGCGCTTTATA
Bacillus subtilis subsp. subtilis str. 168 BSU17570 -99 5.1 TTGAAAGCGCTTTTAT
Position: 34
Score: 5.1
Sequence: TTGAAAGCGCAAACAA
Locus tag: RBAM_017350
RBAM_017350 34 5.1 TTGAAAGCGCAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylA
Ortholog function: Xylose isomerase (EC 5.3.1.5)
Bacillus amyloliquefaciens FZB42 RBAM_017350 34 5.1 TTGAAAGCGCAAACAA
Bacillus clausii KSM-K16 ABC0572 -72 4.7 TTGACACCGCTTACAA
Bacillus halodurans C-125 BH2757 -33 4.7 TTGATAACGCTTACTT
Bacillus licheniformis DSM 13 BLi04048 -109 4.5 TTGAAAGCGATTAATT
Bacillus subtilis subsp. subtilis str. 168 BSU17600 34 4.7 TTGGAAGCGCAAACAA
Geobacillus kaustophilus HTA426 GK1875 -59 5 ATGAAAGCGTTATAAT
Position: 0
Score: 4.3
Sequence: ATGAAAGCGGTTCTAG
Locus tag: RBAM_017960
RBAM_017960 0 4.3 ATGAAAGCGGTTCTAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjmD
Ortholog function: Oxidoreductase, zinc-binding dehydrogenase family (EC 1.1.1.-)
Bacillus amyloliquefaciens FZB42 RBAM_017960 0 4.3 ATGAAAGCGGTTCTAG
Bacillus clausii KSM-K16 ABC0630 -52 4.3 CTGTAAGCGGATTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU12330 -123 4.8 ATGACAGCGTTAACAT
-45 4.5 ATGTTAACGTTAACAT
Position: 0
Score: 4.3
Sequence: ATGAAAACCATTACAA
Locus tag: RBAM_018000
RBAM_018000 0 4.3 ATGAAAACCATTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: endR
Ortholog function: Probable HTH-type transcriptional regulator endR, LacI family
Bacillus amyloliquefaciens FZB42 RBAM_018000 0 4.3 ATGAAAGCGGTTCTAG
Geobacillus kaustophilus HTA426 GK1942 -50 4.5 ATGAAAACGCTTTTGA
Position: -42
Score: 5.2
Sequence: TTGTAAGCGCTTACTA
Locus tag: RBAM_018230
RBAM_018230 -42 5.2 TTGTAAGCGCTTACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yxjC
Ortholog function: D-beta-hydroxybutyrate permease
Bacillus amyloliquefaciens FZB42 RBAM_018230 -42 5.2 TTGTAAGCGCTTACTA
Bacillus subtilis subsp. subtilis str. 168 BSU39000 -41 5.1 TTGTAAACGCTTTCTA
Position: -44
Score: 5.2
Sequence: ATGAAAACGTTTACTA
Locus tag: RBAM_018380
RBAM_018380 -44 5.2 ATGAAAACGTTTACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yngI
Ortholog function: Long-chain fatty-acid-CoA ligase (EC 6.2.1.3)
Bacillus amyloliquefaciens FZB42 RBAM_018380 -44 5.2 ATGAAAACGTTTACTA
Bacillus halodurans C-125 BH1131 -251 4.6 AAGAAACCGTTTACAA
Bacillus licheniformis DSM 13 BLi02144 -35 5.3 ATGAAAACGCTTTCTA
Bacillus pumilus SAFR-032 BPUM_1785 -35 4.8 ATGTAAACGCTTACCA
Bacillus subtilis subsp. subtilis str. 168 BSU18250 -41 4.8 ATGTAAACGCTTTCCT
Geobacillus kaustophilus HTA426 GK1598 -103 4.9 TTGAAAACGCTTCAAA
Oceanobacillus iheyensis HTE831 OB2217 -64 4.9 TTGTAAGCGGTTACTT
Position: -101
Score: 4.7
Sequence: TTGGAAGCGTTTTTAT
Locus tag: RBAM_019130
RBAM_019130 -101 4.7 TTGGAAGCGTTTTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: odhA
Ortholog function: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Bacillus amyloliquefaciens FZB42 RBAM_019130 -101 4.7 TTGGAAGCGTTTTTAT
Bacillus cereus ATCC 14579 BC1252 -101 4.3 AAGAAAACATTTACAT
Bacillus clausii KSM-K16 ABC2114 -63 4.8 TTGTAAGCGCTTGAAA
Bacillus halodurans C-125 BH2206 -64 5 ATGAAAGCGTTATAAA
Bacillus licheniformis DSM 13 BLi02260 -100 4.3 GTGGAAGCGTTTTTAT
Bacillus pumilus SAFR-032 BPUM_1862 -101 4.7 TTGGAAGCGTTTTATT
Bacillus subtilis subsp. subtilis str. 168 BSU19370 -101 4.7 TTGGAAGCGTTTTTAT
Geobacillus kaustophilus HTA426 GK1023 -123 4.1 GTGAAAACGTTTATAC
Oceanobacillus iheyensis HTE831 OB1089 -51 4.3 TTTGAACCGTTTTCAT
Paenibacillus sp. JDR-2 Pjdr2_4724 -242 4.4 ATGAATACGCTTTAAA
Position: -87
Score: 4.4
Sequence: TTAACAACGTTTACAT
Locus tag: RBAM_020070
RBAM_020070 -87 4.4 TTAACAACGTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cspD
Ortholog function: Cold-shock protein, molecular chaperone, RNA-helicase co-factor
Bacillus amyloliquefaciens FZB42 RBAM_020070 -87 4.4 TTAACAACGTTTACAT
Bacillus licheniformis DSM 13 BLi02332 -178 5 TTGAAAACGATTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU21930 -184 4.8 ATAAAAGCGGTTACAT
Position: -37
Score: 4.5
Sequence: TTGAAAGCCTATACAT
Locus tag: RBAM_020890
RBAM_020890 -37 4.5 TTGAAAGCCTATACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndk
Ortholog function: Nucleoside diphosphate kinase (EC 2.7.4.6)
Anoxybacillus flavithermus WK1 Aflv_1096 -104 4.3 ATTAAATCGTTTTCAT
Bacillus amyloliquefaciens FZB42 RBAM_020890 -37 4.5 TTGAAAGCCTATACAT
Bacillus clausii KSM-K16 ABC1890 -70 4.4 TTGTTAGCGTTTTCCT
Bacillus licheniformis DSM 13 BLi02408 -39 4.5 TTGAAAGCCTATACAT
Bacillus pumilus SAFR-032 BPUM_2004 -43 4.3 ATGTAAGCCTATACAT
Bacillus subtilis subsp. subtilis str. 168 BSU22730 -38 4.1 GTGAAAGCCTATACAT
Geobacillus kaustophilus HTA426 GK2209 -105 4.4 TTATTAGCGCTTTCAA
Position: -74
Score: 4.5
Sequence: ATGTAAACGGTTTATA
Locus tag: RBAM_021610
RBAM_021610 -74 4.5 ATGTAAACGGTTTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: drm
Ortholog function: Phosphopentomutase (EC 5.4.2.7)
Anoxybacillus flavithermus WK1 Aflv_0998 -114 4.9 ATGAAAACGTTTTATA
Bacillus amyloliquefaciens FZB42 RBAM_021610 -74 4.5 ATGTAAACGGTTTATA
Bacillus cereus ATCC 14579 BC4087 -222 4.5 AAGAAAGCGTAAACAT
Bacillus licheniformis DSM 13 BLi02500 -99 4.1 GTGTAAACGGTTTATA
Bacillus pumilus SAFR-032 BPUM_2081 -82 4.5 TTGTAAACGGTTTATA
Bacillus subtilis subsp. subtilis str. 168 BSU23500 -77 4.7 ATGAAAACGGTTTATA
Position: -43
Score: 4.6
Sequence: GTGTAAGCGTTATCTT
Locus tag: RBAM_022450
RBAM_022450 -43 4.6 GTGTAAGCGTTATCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mmgA
Ortholog function: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Anoxybacillus flavithermus WK1 Aflv_2739 -16 4.7 TTGAAAGGGCTTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_022450 -43 4.6 GTGTAAGCGTTATCTT
Bacillus halodurans C-125 BH3801 -65 5 ATGTAAGCGCTTAAAT
Bacillus pumilus SAFR-032 BPUM_3373 -32 4.9 ATGTAAGCGGTAACAA
Bacillus subtilis subsp. subtilis str. 168 BSU24170 -37 4.9 TTGTAAGCGCTGTCTA
Geobacillus kaustophilus HTA426 GK3397 -40 4.6 TTGTAATCGCTTTCTT
Position: -73
Score: 4.8
Sequence: ATGAAAATGTTTACAT
Locus tag: RBAM_023110
RBAM_023110 -73 4.8 ATGAAAATGTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqgY
Ortholog function: Uncharacterized short membrane protein
Bacillus amyloliquefaciens FZB42 RBAM_023110 -73 4.8 ATGAAAATGTTTACAT
Bacillus clausii KSM-K16 ABC2500 -76 4.4 AAGAAAGCATTTACAA
Bacillus licheniformis DSM 13 BLi02652 -71 4.8 ATGAAAATGTTTACAT
Bacillus pumilus SAFR-032 BPUM_2208 -76 4.6 ATGTAAATGTTTACAT
Bacillus subtilis subsp. subtilis str. 168 BSU24780 -72 4.8 ATGAAAATGTTTACAT
Oceanobacillus iheyensis HTE831 OB1915 -75 4.6 ATAGAAACGTTTACAA
Paenibacillus sp. JDR-2 Pjdr2_3908 -124 4.3 ATCATAACGCTTTCAA
Position: -109
Score: 4.4
Sequence: TTTTAACCGTTTTCAT
Locus tag: RBAM_023120
RBAM_023120 -109 4.4 TTTTAACCGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqgX
Ortholog function: Similar to Hydroxyacylglutathione hydrolase, but in an organism lacking glutathione biosynthesis
Bacillus amyloliquefaciens FZB42 RBAM_023120 -109 4.4 TTTTAACCGTTTTCAT
Bacillus clausii KSM-K16 ABC2499 -98 4.3 TTGTACCCGTTTTCAT
Bacillus halodurans C-125 BH2820 -112 4.5 TTTTAAACGTTTTCTT
Bacillus licheniformis DSM 13 BLi02653 -105 4.4 TTTTAACCGTTTTCAT
Bacillus pumilus SAFR-032 BPUM_2209 -103 4.4 TTTTAACCGTTTTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU24790 -84 4.3 TCGATAGCGTTTTCAT
Position: -61
Score: 4.8
Sequence: ATGAAAACGGTTAAAA
Locus tag: RBAM_023130
RBAM_023130 -61 4.8 ATGAAAACGGTTAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqgW
Ortholog function: Alkaliphily related protein
Bacillus amyloliquefaciens FZB42 RBAM_023130 -61 4.8 ATGAAAACGGTTAAAA
Bacillus clausii KSM-K16 ABC2498 -57 4.5 ATGAAAACGGGTACAA
Bacillus halodurans C-125 BH2819 -168 4.5 AAGAAAACGTTTAAAA
Bacillus licheniformis DSM 13 BLi02654 -66 4.8 ATGAAAACGGTTAAAA
Bacillus pumilus SAFR-032 BPUM_2210 -40 4.8 ATGAAAACGGTTAAAA
Bacillus subtilis subsp. subtilis str. 168 BSU24800 -88 4.8 ATGAAAACGCTATCGA
Position: -190
Score: 5
Sequence: TTGTAAGCGTATACAA
Locus tag: RBAM_023500
RBAM_023500 -190 5 TTGTAAGCGTATACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cccA
Ortholog function: Membrane-attached cytochrome c550
Bacillus amyloliquefaciens FZB42 RBAM_023500 -190 5 TTGTAAGCGTATACAA
Bacillus pumilus SAFR-032 BPUM_2252 -330 4.8 ATGAAAACGCTTTTTT
Bacillus subtilis subsp. subtilis str. 168 BSU25190 -188 5 TTGTAAGCGTATACAA
Position: -82
Score: 4.7
Sequence: ATGAAAACGGTTTCGT
Locus tag: RBAM_024210
RBAM_024210 -82 4.7 ATGAAAACGGTTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: manR
Ortholog function: Transcriptional regulator of mannose utilization, BglG family
Bacillus amyloliquefaciens FZB42 RBAM_024210 -82 4.7 ATGAAAACGGTTTCGT
Bacillus licheniformis DSM 13 BLi02111 -89 4.5 ATGTAAACGGTTACGT
Bacillus subtilis subsp. subtilis str. 168 BSU12000 -79 4.8 ATGTAAACGGTTTCTT
Position: -143
Score: 4.3
Sequence: ATGTACACGTTTTCTT
Locus tag: RBAM_025520
RBAM_025520 -143 4.3 ATGTACACGTTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b558 subunit
Bacillus amyloliquefaciens FZB42 RBAM_025520 -143 4.3 ATGTACACGTTTTCTT
Bacillus cereus ATCC 14579 BC4518 -178 4.3 ATGTATACGTTTTCTT
Bacillus clausii KSM-K16 ABC2664 -190 4.3 TTGAATCCGTTTTCTT
Bacillus licheniformis DSM 13 BLi02994 -143 4.4 ATGTACGCGTTTTCTT
Bacillus pumilus SAFR-032 BPUM_2503 -139 4.2 ATGTACGCGGTTTCTT
Bacillus subtilis subsp. subtilis str. 168 BSU28450 -139 4.4 ATGTACGCGTTTTCTT
Position: -98
Score: 4.4
Sequence: TGTAAAGCGCTTACAA
Locus tag: RBAM_025570
RBAM_025570 -98 4.4 TGTAAAGCGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xsa
Ortholog function: Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55)
Bacillus amyloliquefaciens FZB42 RBAM_025570 -98 4.4 TGTAAAGCGCTTACAA
Bacillus clausii KSM-K16 ABC3371 -61 4.7 TTGAAAGCGGTGCCAA
Bacillus clausii KSM-K16 ABC3371 -61 4.7 TTGAAAGCGGTGCCAA
Bacillus subtilis subsp. subtilis str. 168 BSU28510 -100 5 TTAAAAGCGCTTACAT
Position: -37
Score: 4.5
Sequence: ATGAAAACGCTTTTCT
Locus tag: RBAM_025750
RBAM_025750 -37 4.5 ATGAAAACGCTTTTCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glcD
Ortholog function: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
Anoxybacillus flavithermus WK1 Aflv_2029 -94 4.7 ATGTAAACGTTTTATT
Bacillus amyloliquefaciens FZB42 RBAM_025750 -37 4.5 ATGAAAACGCTTTTCT
Bacillus licheniformis DSM 13 BLi00330 -96 4.3 TTGAAAACGGGTTCTT
-49 4.7 TTGAAAGCGTTTGATT
Bacillus subtilis subsp. subtilis str. 168 BSU28680 -33 4.6 TTGAAAGCGTTTTTTG
Position: 0
Score: 4.4
Sequence: ATGAATGCGATTACAA
Locus tag: RBAM_025770
RBAM_025770 0 4.4 ATGAATGCGATTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cstA
Ortholog function: Carbon starvation-induced membrane protein
Bacillus amyloliquefaciens FZB42 RBAM_025770 0 4.4 ATGAATGCGATTACAA
Bacillus licheniformis DSM 13 BLi03019 -62 4.3 ATGATTGCGCTTACAA
Bacillus pumilus SAFR-032 BPUM_2525 0 4.6 ATGAATGCGGTTACAA
Bacillus subtilis subsp. subtilis str. 168 BSU28710 0 4.6 ATGAATGCGGTTACAA
Position: -32
Score: 4.4
Sequence: ATGCAAGCGCTTTATT
Locus tag: RBAM_025860
RBAM_025860 -32 4.4 ATGCAAGCGCTTTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araA
Ortholog function: L-arabinose isomerase (EC 5.3.1.4)
Bacillus amyloliquefaciens FZB42 RBAM_025860 -32 4.4 ATGCAAGCGCTTTATT
Bacillus clausii KSM-K16 ABC0408 -136 4.9 TTGGAAGCGCTTTAAT
Bacillus licheniformis DSM 13 BLi03028 -65 5 TTGTAAGCGTTTTAAT
Bacillus pumilus SAFR-032 BPUM_2327 -35 5 TTGAAACCGCTATCAA
Bacillus subtilis subsp. subtilis str. 168 BSU28800 -38 5 TTGAAAGCGTTTTATT
Oceanobacillus iheyensis HTE831 OB2797 -59 4.3 AAGAAAGCGTATCCTT
-29 4.4 ATGTAGGCGTTTTCAG
Position: -33
Score: 5.3
Sequence: TTGAAAGCGCTTTAAA
Locus tag: RBAM_025870
RBAM_025870 -33 5.3 TTGAAAGCGCTTTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: abnA
Ortholog function: Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99)
Bacillus amyloliquefaciens FZB42 RBAM_025870 -33 5.3 TTGAAAGCGCTTTAAA
Bacillus licheniformis DSM 13 BLi03029 -94 4.5 AAGACAGCGCTTACAT
Bacillus subtilis subsp. subtilis str. 168 BSU28810 -38 5.2 TTGTAAGCGCTTTCTA
Position: -166
Score: 5.3
Sequence: ATGAAAGCGTTTTCTT
Locus tag: RBAM_026150
RBAM_026150 -166 5.3 ATGAAAGCGTTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: phoP
Ortholog function: Alkaline phosphatase synthesis transcriptional regulatory protein PhoP
Bacillus amyloliquefaciens FZB42 RBAM_026150 -166 5.3 ATGAAAGCGTTTTCTT
Bacillus licheniformis DSM 13 BLi03059 -69 4.3 GTGAAAACGTTTATTT
Bacillus subtilis subsp. subtilis str. 168 BSU29110 -161 5.4 ATGAAAGCGCTATCAT
Position: -114
Score: 4.6
Sequence: ATGTAAGCATTTTCTT
Locus tag: RBAM_026180
RBAM_026180 -114 4.6 ATGTAAGCATTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mmgD
Ortholog function: Citrate synthase (si) (EC 2.3.3.1)
Anoxybacillus flavithermus WK1 Aflv_0504 -107 4.6 ATGTAAGCATTTTCTT
Anoxybacillus flavithermus WK1 Aflv_0504 -107 4.6 ATGTAAGCATTTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_026180 -114 4.6 ATGTAAGCATTTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_022420 -43 4.6 GTGTAAGCGTTATCTT
Bacillus clausii KSM-K16 ABC1805 -63 4.9 ATGTAAGCGCTTTATT
Bacillus clausii KSM-K16 ABC2715 174 4.6 TTGGAATCGTTTTCAA
Bacillus licheniformis DSM 13 BLi03062 -115 4.6 ATGTAAGCATTTTCTT
Bacillus licheniformis DSM 13 BLi03062 -115 4.6 ATGTAAGCATTTTCTT
Bacillus pumilus SAFR-032 BPUM_2556 -111 4.6 ATGTAAGCATTTTCTT
-69 4.5 TGGATAGCGCTTTCAA
Bacillus pumilus SAFR-032 BPUM_2556 -111 4.6 ATGTAAGCATTTTCTT
-69 4.5 TGGATAGCGCTTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU24140 -37 4.9 TTGTAAGCGCTGTCTA
Bacillus subtilis subsp. subtilis str. 168 BSU29140 -114 4.6 ATGTAAGCATTTTCTT
Oceanobacillus iheyensis HTE831 OB2269 -39 4.4 TTGACTGCGCTTTCAA
Position: -146
Score: 4.7
Sequence: TTGTAAGCGGTACCAA
Locus tag: RBAM_026400
RBAM_026400 -146 4.7 TTGTAAGCGGTACCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: Acetate kinase (EC 2.7.2.1)
Anoxybacillus flavithermus WK1 Aflv_0480 -133 4.4 AAGAAAACGTTTTCGT
Bacillus amyloliquefaciens FZB42 RBAM_026400 -146 4.7 TTGTAAGCGGTACCAA
Bacillus licheniformis DSM 13 BLi03086 -168 4.9 GTGAAAGCGTTAACAT
Bacillus pumilus SAFR-032 BPUM_2579 -180 4.7 ATGTAAGCGGTAACAG
Bacillus subtilis subsp. subtilis str. 168 BSU29470 -156 5.2 TTGTAAGCGTTATCAA
Position: -102
Score: 4.5
Sequence: TATAAAGCGTTTTCAA
Locus tag: RBAM_026800
RBAM_026800 -102 4.5 TATAAAGCGTTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: acsA
Ortholog function: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Anoxybacillus flavithermus WK1 Aflv_0462 237 4.9 ATGAAAGAGTTTTCAA
Bacillus amyloliquefaciens FZB42 RBAM_026800 -102 4.5 TATAAAGCGTTTTCAA
Bacillus clausii KSM-K16 ABC2760 -65 4.7 TTGAAAACGTTACCTT
0 4.8 ATGAAAGCGCTTCCTG
Bacillus halodurans C-125 BH3234 6 4.4 TTGCAAGCGCTTCCAG
Bacillus licheniformis DSM 13 BLi03119 6 4.7 TTGAAAGCGCTGCCAG
Bacillus pumilus SAFR-032 BPUM_2616 -30 4.7 TTGTAAACGTATGCAA
Bacillus subtilis subsp. subtilis str. 168 BSU29680 -101 4.5 TATAAAGCGTTTTCAA
6 4.8 TTGAAAGCGTTACCAG
Oceanobacillus iheyensis HTE831 OB0022 -36 4.5 TTGTAATCGTTTGCAA
Paenibacillus sp. JDR-2 Pjdr2_3796 -56 5 TTGAAAGCGTATTCTT
Position: -72
Score: 4.9
Sequence: TTGAAAACGCTTTATA
Locus tag: RBAM_026810
RBAM_026810 -72 4.9 TTGAAAACGCTTTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: acuA
Ortholog function: Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor
Anoxybacillus flavithermus WK1 Aflv_0461 -70 4.7 ATGAAAACGATTTAAT
Bacillus amyloliquefaciens FZB42 RBAM_026810 -72 4.9 TTGAAAACGCTTTATA
Bacillus licheniformis DSM 13 BLi03120 -69 4.9 ATGAAAACGCTTAATA
Bacillus pumilus SAFR-032 BPUM_2617 -74 4.4 GTGAAACCGTTTTAAT
Bacillus subtilis subsp. subtilis str. 168 BSU29690 -75 4.9 TTGAAAACGCTTTATA
Position: -91
Score: 4.8
Sequence: TTGAAAACGCTTACTC
Locus tag: RBAM_027180
RBAM_027180 -91 4.8 TTGAAAACGCTTACTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: msmR
Ortholog function: Transcriptional regulator of alpha-galactoside utilization, LacI family
Bacillus amyloliquefaciens FZB42 RBAM_027180 -91 4.8 TTGAAAACGCTTACTC
Bacillus halodurans C-125 BH2227 -95 4.5 TTGAAAACGCTTACCC
Bacillus licheniformis DSM 13 BLi01139 -75 4.2 TTGAAAACTTTTACCT
Bacillus pumilus SAFR-032 BPUM_1754 -78 4.4 TTGAAAGCGCTTTACC
Bacillus subtilis subsp. subtilis str. 168 BSU30260 -86 4.8 TTGTAACCGCTTACTT
Position: -43
Score: 4.9
Sequence: TTGTAAGCGTTTTTAT
Locus tag: RBAM_031320
RBAM_031320 -43 4.9 TTGTAAGCGTTTTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araE
Ortholog function: Arabinose-proton symporter
Bacillus amyloliquefaciens FZB42 RBAM_031320 -43 4.9 TTGTAAGCGTTTTTAT
Bacillus subtilis subsp. subtilis str. 168 BSU33960 -38 4.7 ATGAAAACGCTTTACT
Position: -229
Score: 4.9
Sequence: ATAAAAACGCTTACAA
Position: -59
Score: 4.6
Sequence: ATGAAAGGGCTTACTA
Locus tag: RBAM_031330
RBAM_031330 -229 4.9 ATAAAAACGCTTACAA
-59 4.6 ATGAAAGGGCTTACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araR
Ortholog function: Transcriptional repressor of arabinoside utilization operon, GntR family
Bacillus amyloliquefaciens FZB42 RBAM_031330 -229 4.9 ATAAAAACGCTTACAA
-59 4.6 ATGAAAGGGCTTACTA
Bacillus licheniformis DSM 13 BLi02061 -265 4 CTGATAGCGATTTCAT
-239 4 AAGAAAGCATTTTCCT
Bacillus pumilus SAFR-032 BPUM_2330 -254 4.9 TTGATAGCGGTTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU33970 -115 4.4 AGTAAAGCGTTTTCAT
Oceanobacillus iheyensis HTE831 OB2800 -289 4.1 CTGAAAACGCCTACAT
Position: -181
Score: 4.7
Sequence: ATGTAAGCGATTACTT
Locus tag: RBAM_031490
RBAM_031490 -181 4.7 ATGTAAGCGATTACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lutR
Ortholog function: Lactate-responsive regulator, GntR family
Anoxybacillus flavithermus WK1 Aflv_2010 -87 4.6 ATGTAAGCGCAACCAT
Bacillus amyloliquefaciens FZB42 RBAM_031490 -181 4.7 ATGTAAGCGATTACTT
Bacillus halodurans C-125 BH1835 -70 4.8 TTTAAAACGCTTACAT
Bacillus subtilis subsp. subtilis str. 168 BSU34180 -254 5 ATGTAAGCGGTTTCTA
Geobacillus kaustophilus HTA426 GK0396 -343 4.8 ATAAAAGCGTTTTCAG
Oceanobacillus iheyensis HTE831 OB0369 -36 4.1 ATGAAATCGCTTCATT
Position: -33
Score: 5
Sequence: ATGTAAACGGTTACAT
Locus tag: RBAM_033080
RBAM_033080 -33 5 ATGTAAACGGTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsR
Ortholog function: Ribose operon repressor, LacI family
Bacillus amyloliquefaciens FZB42 RBAM_033080 -33 5 ATGTAAACGGTTACAT
Bacillus pumilus SAFR-032 BPUM_3263 -38 4.2 GTGTAAACGGTTACAC
Bacillus subtilis subsp. subtilis str. 168 BSU35910 -34 5 ATGTAAACGGTTACAT
Oceanobacillus iheyensis HTE831 OB2577 -68 4.8 ATCAAAACGCTTTCAT
-40 4.1 CTGAAACCGGTTCCAT
Position: -99
Score: 5
Sequence: TTGAAAGCGCTATAAT
Locus tag: RBAM_034850
RBAM_034850 -99 5 TTGAAAGCGCTATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pta
Ortholog function: Phosphate acetyltransferase (EC 2.3.1.8)
Bacillus amyloliquefaciens FZB42 RBAM_034850 -99 5 TTGAAAGCGCTATAAT
Bacillus clausii KSM-K16 ABC3910 -143 4.3 TTGAAAACCCTTTCCT
-124 4.5 ATGGAAGCGTAATCTA
Bacillus halodurans C-125 BH3823 -194 4.8 TTGGAAACGCTTTAAA
Bacillus licheniformis DSM 13 BLi03997 -104 4.3 GTGTAAACGTTATAAT
Bacillus pumilus SAFR-032 BPUM_3415 -100 4.9 TTGTAAGCGCTATAAT
Bacillus subtilis subsp. subtilis str. 168 BSU37660 -100 5 ATGAAAGCGCTATAAT
-38 4 AAGAAAGCGTTTTTGT
Position: -178
Score: 4.5
Sequence: ATTATAGCGCTTTCAA
Locus tag: RBAM_034860
RBAM_034860 -178 4.5 ATTATAGCGCTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywfI
Ortholog function: Predicted heme peroxidase involved in anaerobic stress response
Bacillus amyloliquefaciens FZB42 RBAM_034860 -178 4.5 ATTATAGCGCTTTCAA
Bacillus halodurans C-125 BH3825 -114 4.7 TTTAAAGCGTTTCCAA
Bacillus pumilus SAFR-032 BPUM_3416 -156 4.5 ATTATAGCGCTTACAA
Bacillus subtilis subsp. subtilis str. 168 BSU37670 -200 4.5 ATTATAGCGCTTTCAT
Position: -175
Score: 4.7
Sequence: ACGAAAGCGCTATCAT
Position: -151
Score: 5
Sequence: ATGAAAGCGCATTAAA
Locus tag: RBAM_035290
RBAM_035290 -175 4.7 ACGAAAGCGCTATCAT
-151 5 ATGAAAGCGCATTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sacP
Ortholog function: PTS sucrose-specific enzyme IIBC component
Anoxybacillus flavithermus WK1 Aflv_2785 -147 4.7 ATGAAAGCGGATAAAA
Bacillus amyloliquefaciens FZB42 RBAM_035290 -175 4.7 ACGAAAGCGCTATCAT
-151 5 ATGAAAGCGCATTAAA
Bacillus cereus ATCC 14579 BC0775 -158 4.7 AAGAAAGCGTTGACAA
Bacillus halodurans C-125 BH1856 -170 4.3 GAGAAAGCGTTGACAA
Bacillus licheniformis DSM 13 BLi04017 -154 4.9 ATGAAAGCGTATTAAA
Bacillus pumilus SAFR-032 BPUM_3452 -145 5.1 ATGAAAGCGTAATCAA
Bacillus subtilis subsp. subtilis str. 168 BSU38050 -151 5 ATGAAAGCGTATTCTT
Position: 15
Score: 4.3
Sequence: AAGAAAGCGTTTGCTG
Locus tag: RBAM_035460
RBAM_035460 15 4.3 AAGAAAGCGTTTGCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: galK
Ortholog function: Galactokinase (EC 2.7.1.6)
Bacillus amyloliquefaciens FZB42 RBAM_035460 15 4.3 AAGAAAGCGTTTGCTG
Bacillus pumilus SAFR-032 BPUM_3468 247 4.4 TTGAAATCGCTTACGT
Position: -80
Score: 5.1
Sequence: ATGTAAGCGTTTCCAA
Locus tag: RBAM_035650
RBAM_035650 -80 5.1 ATGTAAGCGTTTCCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: licC2
Ortholog function: PTS system, lichenan-specific IIC component (EC 2.7.1.69)
Bacillus amyloliquefaciens FZB42 RBAM_035650 -80 5.1 ATGTAAGCGTTTCCAA
Bacillus licheniformis DSM 13 BLi04088 -74 5.2 ATGAAAACGGTTTCAT
Bacillus pumilus SAFR-032 BPUM_3505 -71 5.3 ATGAAAGCGGTTTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU38390 -79 5.4 TTGTAAGCGTTTTCAA
Position: -75
Score: 5.1
Sequence: ATGAAAGCGATTTCAT
Locus tag: RBAM_035790
RBAM_035790 -75 5.1 ATGAAAGCGATTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: licB
Ortholog function: PTS system, lichenan-specific IIB component (EC 2.7.1.69); PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
Bacillus amyloliquefaciens FZB42 RBAM_035790 -75 5.1 ATGAAAGCGATTTCAT
Bacillus licheniformis DSM 13 BLi04089 -74 5.2 ATGAAAACGGTTTCAT
Bacillus pumilus SAFR-032 BPUM_3506 -71 5.3 ATGAAAGCGGTTTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU38590 -77 5.1 ATGAAAGCGATTTCAT
Position: -38
Score: 4.7
Sequence: ATGAAAACGTTTTAAC
Locus tag: RBAM_035870
RBAM_035870 -38 4.7 ATGAAAACGTTTTAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: gmuB
Ortholog function: PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
Bacillus amyloliquefaciens FZB42 RBAM_035870 -38 4.7 ATGAAAACGTTTTAAC
Bacillus clausii KSM-K16 ABC0481 -60 4.9 TTGTAAGCGGATTCAT
Bacillus halodurans C-125 BH3921 -36 4.2 GTGAAAGCGCTTATCA
Bacillus licheniformis DSM 13 BLi02564 -34 4.8 GTGAAAGCGCTTTTAA
Bacillus pumilus SAFR-032 BPUM_2121 -37 4.2 CTGGAAGCGCTTTTAT
Bacillus subtilis subsp. subtilis str. 168 BSU05810 -33 5 ATGTAAGCGTTTTAAT
Geobacillus kaustophilus HTA426 GK1859 -50 4.8 TTGAAAACGATATCAT
Oceanobacillus iheyensis HTE831 OB2760 -62 4.8 TTGTAACCGTTTTCTT
Position: 21
Score: 4.3
Sequence: TTGCAAACGGATTCAA
Locus tag: RBAM_036020
RBAM_036020 21 4.3 TTGCAAACGGATTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cimH
Ortholog function: L-Malate Citrate symporter (TC 2.A.24.2.4)
Bacillus amyloliquefaciens FZB42 RBAM_036020 21 4.3 TTGCAAACGGATTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU38770 27 4.2 TTGCAAACGGATACAA
Position: -32
Score: 5
Sequence: AAGAAAGCGTTTACAA
Locus tag: RBAM_036040
RBAM_036040 -32 5 AAGAAAGCGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: msmX
Ortholog function: Maltose/maltodextrin transport ATP-binding protein (EC 3.6.3.19)
Bacillus amyloliquefaciens FZB42 RBAM_036040 -32 5 AAGAAAGCGTTTACAA
Bacillus subtilis subsp. subtilis str. 168 BSU38810 -35 5 AAGAAAGCGTTTACAA
Position: -46
Score: 4.7
Sequence: GTGAAAGCGCTTACCA
Locus tag: RBAM_036180
RBAM_036180 -46 4.7 GTGAAAGCGCTTACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: citH
Ortholog function: Ca2+/citrate complex secondary transporter
Bacillus amyloliquefaciens FZB42 RBAM_036180 -46 4.7 GTGAAAGCGCTTACCA
Bacillus subtilis subsp. subtilis str. 168 BSU39060 -46 4.8 ATGGAAGCGCTTACCA
Position: -230
Score: 4.9
Sequence: ATGAAAGCGTTGGCAT
Locus tag: RBAM_036190
RBAM_036190 -230 4.9 ATGAAAGCGTTGGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bglS
Ortholog function: Endo-beta-1,3-1,4 glucanase (Licheninase) (EC 3.2.1.73)
Bacillus amyloliquefaciens FZB42 RBAM_036190 -230 4.9 ATGAAAGCGTTGGCAT
-34 4.5 AAGAAATCGCTTTCAA
Bacillus pumilus SAFR-032 BPUM_0463 -38 5 AAGAAAACGCTTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU39070 -34 5 TAGAAAACGCTTTCAA
Position: -257
Score: 4.5
Sequence: ATGTAAGCGTTGACAC
Locus tag: RBAM_036360
RBAM_036360 -257 4.5 ATGTAAGCGTTGACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: bglP
Ortholog function: PTS system, aryl-phospho-beta-glucoside-specific component IIABC (EC 2.7.1.69)
Bacillus amyloliquefaciens FZB42 RBAM_036360 -257 4.5 ATGTAAGCGTTGACAC
Bacillus licheniformis DSM 13 BLi04215 -286 5.1 ATGAAAGCGTTGACAT
Bacillus pumilus SAFR-032 BPUM_3566 -320 4.6 AAGAAAGCGTTGACAT
Bacillus subtilis subsp. subtilis str. 168 BSU39270 -253 5.1 ATGAAAGCGTTGACAT
Position: -45
Score: 4.9
Sequence: TTGAAAGCGTTTTAAG
Locus tag: RBAM_036390
RBAM_036390 -45 4.9 TTGAAAGCGTTTTAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: abnB
Ortholog function: Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55)
Bacillus amyloliquefaciens FZB42 RBAM_036390 -45 4.9 TTGAAAGCGTTTTAAG
Bacillus clausii KSM-K16 ABC3369 -61 4.7 TTGAAAGCGGTGCCAA
Bacillus halodurans C-125 BH1878 -40 4.2 TTGTAAGGGTTTTCAC
Bacillus licheniformis DSM 13 BLi04220 -30 5.2 ATGAAAGCGTTTTAAA
Bacillus subtilis subsp. subtilis str. 168 BSU39330 -46 5 ATGTAAGCGTTTAAAA
Position: -33
Score: 4.6
Sequence: TTGTAAGCGAATACAA
Locus tag: RBAM_036470
RBAM_036470 -33 4.6 TTGTAAGCGAATACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nupC
Ortholog function: Nucleoside permease NupC
Bacillus amyloliquefaciens FZB42 RBAM_036470 -33 4.6 TTGTAAGCGAATACAA
Bacillus licheniformis DSM 13 BLi04228 -34 4.6 ATGTAAGCGAATACAT
Bacillus pumilus SAFR-032 BPUM_3586 -31 4.5 ATGTAAACGAATTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU39410 -33 4.6 TTGTAAGCGAATACAA
Position: -177
Score: 4.5
Sequence: ATGTAACCGTTTGCTT
Position: -102
Score: 4.8
Sequence: TTGTAAGCGTTTAATT
Locus tag: RBAM_036780
RBAM_036780 -177 4.5 ATGTAACCGTTTGCTT
-102 4.8 TTGTAAGCGTTTAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: iolA
Ortholog function: Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27)
Bacillus amyloliquefaciens FZB42 RBAM_036780 -177 4.5 ATGTAACCGTTTGCTT
-102 4.8 TTGTAAGCGTTTAATT
67 4.5 ATGAAGACGTTATCAA
Bacillus clausii KSM-K16 ABC0422 -35 4.5 ATGAAAGCGGTTTACT
Bacillus licheniformis DSM 13 BLi04251 -196 4.3 GTGTAAACGTTTTATT
-132 4.8 TTGTAAGCGTTTAATT
Bacillus subtilis subsp. subtilis str. 168 BSU39760 -106 4.9 TTGAAAGCGTTTAATT
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