Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Geobacillus thermodenitrificans NG80-2

Reference regulog properties
Source regulog: CcpA - Bacillales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein
Phylum: Firmicutes
Propagated regulon:
Target genome Geobacillus thermodenitrificans NG80-2
Orthologous TF(s) GTNG_2715
Regulated genes 27
Built upon 559 sites [see more]
Predicted regulatory interactions in Geobacillus thermodenitrificans NG80-2
Locus tag Position Score Sequence
Position: -249
Score: 4.3
Sequence: TAAAAAGCGTTTTCTT
Locus tag: GTNG_0369
GTNG_0369 -249 4.3 TAAAAAGCGTTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lutR
Ortholog function: Lactate-responsive regulator, GntR family
Anoxybacillus flavithermus WK1 Aflv_2010 -87 4.6 ATGTAAGCGCAACCAT
Bacillus amyloliquefaciens FZB42 RBAM_031490 -181 4.7 ATGTAAGCGATTACTT
Bacillus halodurans C-125 BH1835 -70 4.8 TTTAAAACGCTTACAT
Bacillus subtilis subsp. subtilis str. 168 BSU34180 -254 5 ATGTAAGCGGTTTCTA
Geobacillus kaustophilus HTA426 GK0396 -343 4.8 ATAAAAGCGTTTTCAG
Oceanobacillus iheyensis HTE831 OB0369 -36 4.1 ATGAAATCGCTTCATT
Position: -38
Score: 5.2
Sequence: TTGAAAGCGTTGTCAA
Locus tag: GTNG_0504
GTNG_0504 -38 5.2 TTGAAAGCGTTGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dctA
Ortholog function: C4-dicarboxylate transport protein
Bacillus amyloliquefaciens FZB42 RBAM_004800 -54 5.3 TTGAAAACGCTATCAT
Bacillus pumilus SAFR-032 BPUM_0419 -72 4.8 TTGAAATCGCTATCAT
Bacillus subtilis subsp. subtilis str. 168 BSU04470 -64 5.3 ATGAAAACGCTATCAT
Position: -33
Score: 4.5
Sequence: AGGAAAACGATTTCAA
Locus tag: GTNG_0543
GTNG_0543 -33 4.5 AGGAAAACGATTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: msmX
Ortholog function: Maltose/maltodextrin transport ATP-binding protein (EC 3.6.3.19)
Anoxybacillus flavithermus WK1 Aflv_2303 -30 4.4 ATGAAATCGATTACAT
Bacillus clausii KSM-K16 ABC1514 -48 4.6 ATGAAAGGGGTTACAA
Bacillus halodurans C-125 BH1140 -47 4.6 TTGTAAGCGCTACAAT
Bacillus licheniformis DSM 13 BLi01052 -34 4.6 GTTAAAGCGCTTACAT
Bacillus pumilus SAFR-032 BPUM_0922 -41 4.1 AGTGAAGCGCTTTCAA
Oceanobacillus iheyensis HTE831 OB1134 -37 4.1 ATGTAATCGTTAACAC
Position: -36
Score: 4.8
Sequence: TTGAAAACGCTTCAAT
Locus tag: GTNG_0817
GTNG_0817 -36 4.8 TTGAAAACGCTTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywcB
Ortholog function: Hypothetical membrane spanning protein
Geobacillus kaustophilus HTA426 GK0929 -37 4.8 TTGAAAACGCTTGAAT
Position: -201
Score: 4.5
Sequence: GTGAAAACGTTTATAT
Locus tag: GTNG_0885
GTNG_0885 -201 4.5 GTGAAAACGTTTATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: odhA
Ortholog function: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Bacillus amyloliquefaciens FZB42 RBAM_019130 -101 4.7 TTGGAAGCGTTTTTAT
Bacillus cereus ATCC 14579 BC1252 -101 4.3 AAGAAAACATTTACAT
Bacillus clausii KSM-K16 ABC2114 -63 4.8 TTGTAAGCGCTTGAAA
Bacillus halodurans C-125 BH2206 -64 5 ATGAAAGCGTTATAAA
Bacillus licheniformis DSM 13 BLi02260 -100 4.3 GTGGAAGCGTTTTTAT
Bacillus pumilus SAFR-032 BPUM_1862 -101 4.7 TTGGAAGCGTTTTATT
Bacillus subtilis subsp. subtilis str. 168 BSU19370 -101 4.7 TTGGAAGCGTTTTTAT
Geobacillus kaustophilus HTA426 GK1023 -123 4.1 GTGAAAACGTTTATAC
Oceanobacillus iheyensis HTE831 OB1089 -51 4.3 TTTGAACCGTTTTCAT
Paenibacillus sp. JDR-2 Pjdr2_4724 -242 4.4 ATGAATACGCTTTAAA
Position: -47
Score: 4.2
Sequence: ATGAAAGCGCTAAGAC
Locus tag: GTNG_1061
GTNG_1061 -47 4.2 ATGAAAGCGCTAAGAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sucC
Ortholog function: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Bacillus amyloliquefaciens FZB42 RBAM_015920 -52 4.8 ATGAAAGCGCAGTCTA
Bacillus licheniformis DSM 13 BLi01829 -53 4.8 ATGAAAGCGCAGTCTA
Bacillus pumilus SAFR-032 BPUM_1507 -57 4.8 ATGAAAGCGCAGTCTA
Bacillus subtilis subsp. subtilis str. 168 BSU16090 -51 4.8 ATGAAAGCGCAGTCTA
Geobacillus kaustophilus HTA426 GK1208 -47 4.2 ATGAAAGCGCTAAGAC
Position: -201
Score: 4.9
Sequence: TTGACAACGCTTACAA
Locus tag: GTNG_1215
GTNG_1215 -201 4.9 TTGACAACGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpF
Ortholog function: Glycerol uptake facilitator protein
Bacillus cereus ATCC 14579 BC1034 -191 4.7 TTGACACCGCTTTCAT
Bacillus clausii KSM-K16 ABC3383 -198 4.2 ATGTATCCGTTTACAA
Bacillus licheniformis DSM 13 BLi00994 -207 4.5 TTGACAACGCTTTCAC
Bacillus pumilus SAFR-032 BPUM_0882 -191 4.9 TTGACAACGTTTTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU09280 -182 4.7 TTGACACCGCTTTCAT
Geobacillus kaustophilus HTA426 GK1359 -206 5.1 TTGACAGCGTTTTCAA
Oceanobacillus iheyensis HTE831 OB2476 -164 4.7 TTGACAACGCTTTCAG
Position: -49
Score: 4.8
Sequence: TTGAAAACGATAACAT
Locus tag: GTNG_1750
GTNG_1750 -49 4.8 TTGAAAACGATAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gmuB
Ortholog function: PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
Bacillus amyloliquefaciens FZB42 RBAM_035870 -38 4.7 ATGAAAACGTTTTAAC
Bacillus clausii KSM-K16 ABC0481 -60 4.9 TTGTAAGCGGATTCAT
Bacillus halodurans C-125 BH3921 -36 4.2 GTGAAAGCGCTTATCA
Bacillus licheniformis DSM 13 BLi02564 -34 4.8 GTGAAAGCGCTTTTAA
Bacillus pumilus SAFR-032 BPUM_2121 -37 4.2 CTGGAAGCGCTTTTAT
Bacillus subtilis subsp. subtilis str. 168 BSU05810 -33 5 ATGTAAGCGTTTTAAT
Geobacillus kaustophilus HTA426 GK1859 -50 4.8 TTGAAAACGATATCAT
Oceanobacillus iheyensis HTE831 OB2760 -62 4.8 TTGTAACCGTTTTCTT
Position: -67
Score: 5
Sequence: ATGAAAGCGTTATAAT
Locus tag: GTNG_1757
GTNG_1757 -67 5 ATGAAAGCGTTATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylA
Ortholog function: Xylose isomerase (EC 5.3.1.5)
Bacillus amyloliquefaciens FZB42 RBAM_017350 34 5.1 TTGAAAGCGCAAACAA
Bacillus clausii KSM-K16 ABC0572 -72 4.7 TTGACACCGCTTACAA
Bacillus halodurans C-125 BH2757 -33 4.7 TTGATAACGCTTACTT
Bacillus licheniformis DSM 13 BLi04048 -109 4.5 TTGAAAGCGATTAATT
Bacillus subtilis subsp. subtilis str. 168 BSU17600 34 4.7 TTGGAAGCGCAAACAA
Geobacillus kaustophilus HTA426 GK1875 -59 5 ATGAAAGCGTTATAAT
Position: -122
Score: 5
Sequence: TTGAAACCGCTTACTA
Locus tag: GTNG_1773
GTNG_1773 -122 5 TTGAAACCGCTTACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH1064
Ortholog function: ABC-type sugar transport system, substrate-binding protein
Bacillus halodurans C-125 BH1064 -114 4.7 ATGTAAGCGATTACTT
Position: 6
Score: 4.8
Sequence: AAGAAAGCGTTAACAT
Locus tag: GTNG_1780
GTNG_1780 6 4.8 AAGAAAGCGTTAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH3680
Ortholog function: Predicted beta-xyloside ABC transporter, substrate-binding component
Bacillus halodurans C-125 BH3680 6 4.9 AGGAAAACGCTTACAA
Oceanobacillus iheyensis HTE831 OB3123 9 4.7 AAGAAAGCGTTTACAG
Paenibacillus sp. JDR-2 Pjdr2_0728 -8 4.6 TTGTAAACGTGTTCAA
Position: -118
Score: 5.1
Sequence: TTAAAAGCGTTTTCAA
Locus tag: GTNG_1794
GTNG_1794 -118 5.1 TTAAAAGCGTTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araN
Ortholog function: Alpha-arabinosides ABC transport system, substrate-binding protein
Bacillus amyloliquefaciens FZB42 RBAM_025810 -32 4.4 ATGCAAGCGCTTTATT
Bacillus halodurans C-125 BH0905 -113 5 ATGTAAACGTTAACAA
Bacillus licheniformis DSM 13 BLi03024 -65 5 TTGTAAGCGTTTTAAT
Bacillus subtilis subsp. subtilis str. 168 BSU28750 -38 5 TTGAAAGCGTTTTATT
Position: -127
Score: 4.8
Sequence: TTGAAAACGCTTCAAT
Locus tag: GTNG_1801
GTNG_1801 -127 4.8 TTGAAAACGCTTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araF
Ortholog function: L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2)
Bacillus clausii KSM-K16 ABC0409 -35 5.4 TTGAAAGCGTTATCAA
Bacillus halodurans C-125 BH3442 -64 5 ATGACAACGCTTTCAT
Bacillus licheniformis DSM 13 BLi00442 -128 4.8 ATGTAAGCGCTTCAAA
Geobacillus kaustophilus HTA426 GK1910 -129 4.4 TTGAAAACGCTTCAAC
Position: -49
Score: 4.6
Sequence: ATGAAAGCGCTTTTGA
Locus tag: GTNG_1837
GTNG_1837 -49 4.6 ATGAAAGCGCTTTTGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: endR
Ortholog function: Probable HTH-type transcriptional regulator endR, LacI family
Bacillus amyloliquefaciens FZB42 RBAM_018000 0 4.3 ATGAAAGCGGTTCTAG
Geobacillus kaustophilus HTA426 GK1942 -50 4.5 ATGAAAACGCTTTTGA
Position: -55
Score: 4.6
Sequence: TTGTAAGCGTTTGTAA
Locus tag: GTNG_1847
GTNG_1847 -55 4.6 TTGTAAGCGTTTGTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtlA
Ortholog function: PTS family mannitol-permease II, BC component
Anoxybacillus flavithermus WK1 Aflv_1566 -58 4.5 CTGTAAGCGCTTTAAT
Bacillus amyloliquefaciens FZB42 RBAM_004230 -96 4.6 TTGTAAGCGTTTTATG
Bacillus halodurans C-125 BH3854 -39 4.3 ATGAGAGCGCTTTATT
Bacillus licheniformis DSM 13 BLi00505 -94 4.4 CTGTAAGCGTTTTAAT
Bacillus pumilus SAFR-032 BPUM_0369 -106 4.1 GTGAAAGCGTTTTACG
Bacillus subtilis subsp. subtilis str. 168 BSU03981 -95 4 CTGTAAGCGTTTTAAC
Geobacillus kaustophilus HTA426 GK1948 -54 4.8 TTGTAAGCGTTTTAAG
Oceanobacillus iheyensis HTE831 OB2603 -75 4.4 TTGTAAGCGGATTCCT
Paenibacillus sp. JDR-2 Pjdr2_6226 -33 4.1 AAGAAAGCGATTTTAT
Position: -49
Score: 4.4
Sequence: ACGAAAGCGGTTTCTT
Locus tag: GTNG_2300
GTNG_2300 -49 4.4 ACGAAAGCGGTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mutB
Ortholog function: Methylmalonyl-CoA mutase, small subunit (EC 5.4.99.2)
Anoxybacillus flavithermus WK1 Aflv_0965 -39 4.3 AAGAAAGCGTTTTAAC
Position: -165
Score: 5
Sequence: TTGTAAGCGTATACAA
Locus tag: GTNG_2591
GTNG_2591 -165 5 TTGTAAGCGTATACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dat
Ortholog function: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Anoxybacillus flavithermus WK1 Aflv_0590 -170 4.8 ATGTAAGCGGATACAT
Bacillus cereus ATCC 14579 BC1396 -153 5 TTGTAAACGTTAACAA
Bacillus licheniformis DSM 13 BLi02962 -225 5 ATGTAAGCGTATACAA
Bacillus pumilus SAFR-032 BPUM_2473 -200 4.6 GTGTAAGCGTATACAT
Geobacillus kaustophilus HTA426 GK2662 -165 5.1 ATGTAAGCGCATTCAA
Position: -106
Score: 4.6
Sequence: ATGTAAGCACTTTCTT
Locus tag: GTNG_2660
GTNG_2660 -106 4.6 ATGTAAGCACTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mmgD
Ortholog function: Citrate synthase (si) (EC 2.3.3.1)
Anoxybacillus flavithermus WK1 Aflv_0504 -107 4.6 ATGTAAGCATTTTCTT
Anoxybacillus flavithermus WK1 Aflv_0504 -107 4.6 ATGTAAGCATTTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_026180 -114 4.6 ATGTAAGCATTTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_022420 -43 4.6 GTGTAAGCGTTATCTT
Bacillus clausii KSM-K16 ABC1805 -63 4.9 ATGTAAGCGCTTTATT
Bacillus clausii KSM-K16 ABC2715 174 4.6 TTGGAATCGTTTTCAA
Bacillus licheniformis DSM 13 BLi03062 -115 4.6 ATGTAAGCATTTTCTT
Bacillus licheniformis DSM 13 BLi03062 -115 4.6 ATGTAAGCATTTTCTT
Bacillus pumilus SAFR-032 BPUM_2556 -111 4.6 ATGTAAGCATTTTCTT
-69 4.5 TGGATAGCGCTTTCAA
Bacillus pumilus SAFR-032 BPUM_2556 -111 4.6 ATGTAAGCATTTTCTT
-69 4.5 TGGATAGCGCTTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU24140 -37 4.9 TTGTAAGCGCTGTCTA
Bacillus subtilis subsp. subtilis str. 168 BSU29140 -114 4.6 ATGTAAGCATTTTCTT
Oceanobacillus iheyensis HTE831 OB2269 -39 4.4 TTGACTGCGCTTTCAA
Position: -31
Score: 4.4
Sequence: ATGTAACCACTTACAT
Locus tag: GTNG_2711
GTNG_2711 -31 4.4 ATGTAACCACTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acsA
Ortholog function: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Anoxybacillus flavithermus WK1 Aflv_0462 237 4.9 ATGAAAGAGTTTTCAA
Bacillus amyloliquefaciens FZB42 RBAM_026800 -102 4.5 TATAAAGCGTTTTCAA
Bacillus clausii KSM-K16 ABC2760 -65 4.7 TTGAAAACGTTACCTT
0 4.8 ATGAAAGCGCTTCCTG
Bacillus halodurans C-125 BH3234 6 4.4 TTGCAAGCGCTTCCAG
Bacillus licheniformis DSM 13 BLi03119 6 4.7 TTGAAAGCGCTGCCAG
Bacillus pumilus SAFR-032 BPUM_2616 -30 4.7 TTGTAAACGTATGCAA
Bacillus subtilis subsp. subtilis str. 168 BSU29680 -101 4.5 TATAAAGCGTTTTCAA
6 4.8 TTGAAAGCGTTACCAG
Oceanobacillus iheyensis HTE831 OB0022 -36 4.5 TTGTAATCGTTTGCAA
Paenibacillus sp. JDR-2 Pjdr2_3796 -56 5 TTGAAAGCGTATTCTT
Position: -247
Score: 4.5
Sequence: ATGTAAGTGGTTACAT
Locus tag: GTNG_2712
GTNG_2712 -247 4.5 ATGTAAGTGGTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acuA
Ortholog function: Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor
Anoxybacillus flavithermus WK1 Aflv_0461 -70 4.7 ATGAAAACGATTTAAT
Bacillus amyloliquefaciens FZB42 RBAM_026810 -72 4.9 TTGAAAACGCTTTATA
Bacillus licheniformis DSM 13 BLi03120 -69 4.9 ATGAAAACGCTTAATA
Bacillus pumilus SAFR-032 BPUM_2617 -74 4.4 GTGAAACCGTTTTAAT
Bacillus subtilis subsp. subtilis str. 168 BSU29690 -75 4.9 TTGAAAACGCTTTATA
Position: -40
Score: 4.7
Sequence: TTGAAAAGGTTTTCAA
Locus tag: GTNG_3126
GTNG_3126 -40 4.7 TTGAAAAGGTTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH3845
Ortholog function: Predicted beta-glucoside-regulated ABC transport system, sugar-binding protein
Bacillus halodurans C-125 BH3845 -81 4.9 ATGAAAGCGATTTCTT
24 4.6 ATGATAGCGCTTTCTG
Bacillus pumilus SAFR-032 BPUM_3238 -37 4.9 TTGATAACGCTTACAA
Geobacillus kaustophilus HTA426 GK3207 -41 4.6 TTGAAAGGGGTTTCAA
Position: -115
Score: 4.3
Sequence: TTGGAAGGGCTTACTA
Locus tag: GTNG_3361
GTNG_3361 -115 4.3 TTGGAAGGGCTTACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pta
Ortholog function: Phosphate acetyltransferase (EC 2.3.1.8)
Bacillus amyloliquefaciens FZB42 RBAM_034850 -99 5 TTGAAAGCGCTATAAT
Bacillus clausii KSM-K16 ABC3910 -143 4.3 TTGAAAACCCTTTCCT
-124 4.5 ATGGAAGCGTAATCTA
Bacillus halodurans C-125 BH3823 -194 4.8 TTGGAAACGCTTTAAA
Bacillus licheniformis DSM 13 BLi03997 -104 4.3 GTGTAAACGTTATAAT
Bacillus pumilus SAFR-032 BPUM_3415 -100 4.9 TTGTAAGCGCTATAAT
Bacillus subtilis subsp. subtilis str. 168 BSU37660 -100 5 ATGAAAGCGCTATAAT
-38 4 AAGAAAGCGTTTTTGT
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