Propagation of Crp regulog to Buchnera aphidicola str. Bp (Baizongia pistaciae)
| Source regulog: | Crp - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Buchnera aphidicola str. Bp (Baizongia pistaciae) |
| Orthologous TF(s) | No orthologous TFs found |
| Regulated genes | 36 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -199
Score: 3.8 Sequence: TTTTTTGAAATAAATCAAATGT
Position: -106
Score: 4.2 Sequence: ATTTATGATGTAATTTAAAAAT
Locus tag: bbp002
|
||||
| bbp002 | -199 | 3.8 | TTTTTTGAAATAAATCAAATGT | |
| -106 | 4.2 | ATTTATGATGTAATTTAAAAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpB | ||||
| Ortholog function: ATP synthase subunit A | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3738 | -263 | 4.8 | ATATGTGATCTGAAGCACGCTT |
| Salmonella typhimurium LT2 | STM3871 | -262 | 4.6 | ATGTGTGATCTGGTGCACGCTT |
| -211 | 4.1 | TTTTGTACGATCGTTCACACTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00078 | -262 | 4.7 | ATATGTGATCCGAAGCACGCTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04143 | -262 | 4.7 | TTATGTGATCTGATGCACGCTT |
| Enterobacter sp. 638 | Ent638_4126 | -261 | 4.8 | TTTTGTGATCTCGTGCACGCTT |
| Erwinia amylovora ATCC 49946 | EAM_3480 | -264 | 4.4 | ATTTGTGATCGTGGACACGCTT |
| Yersinia pestis KIM | y4141 | -263 | 5.4 | TTATGTGATGTATTTCACGTTT |
| Serratia proteamaculans 568 | Spro_0002 | -265 | 4.4 | TATTGTGAGCAACTACACGTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4518 | -254 | 5 | TTATGTGAGTCACATCACAGAT |
| Edwardsiella tarda EIB202 | ETAE_3527 | -297 | 3.7 | AATCGTGAAAATATTTAAATTA |
| Proteus mirabilis HI4320 | PMI3058 | -259 | 5 | TTGTGTGTTCTAGATCACATTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0046 | -265 | 5.7 | TTATGTGATTTAAATCACATTT |
|
Position: -134
Score: 3.7 Sequence: TATTATTAAGTAGATAAAATTA
Locus tag: bbp030
|
||||
| bbp030 | -134 | 3.7 | TATTATTAAGTAGATAAAATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yigL | ||||
| Ortholog function: Hydrolase (HAD superfamily) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00167 | -60 | 3.8 | TATTGTGTCAGGCATCATAAAG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04322 | -56 | 3.8 | TTGTGTGATACACGGTAAAAAA |
| Enterobacter sp. 638 | Ent638_3970 | -56 | 4.3 | TTTTGTGATGCGTCACGAAAAA |
| Yersinia pestis KIM | y0401 | -144 | 4.8 | AGTTGTGCTATGGCTCACAAAA |
| Serratia proteamaculans 568 | Spro_0197 | -88 | 3.8 | TTGTAAGAATTGAATCACAATA |
| -53 | 4.2 | TCTTGTGCCAGAGGTCACATTT | ||
| Edwardsiella tarda EIB202 | ETAE_3342 | -217 | 3.9 | CGGTGTGATAATCCTCAAACTT |
|
Position: -100
Score: 4.6 Sequence: ATATATGATATATTTTACATTT
Position: -51
Score: 3.3 Sequence: AAGTACGTTTCAAATAACATTT
Position: 6
Score: 4.1 Sequence: AAATCTGAATTAATTAACATTA
Locus tag: bbp033
|
||||
| bbp033 | -100 | 4.6 | ATATATGATATATTTTACATTT | |
| -51 | 3.3 | AAGTACGTTTCAAATAACATTT | ||
| 6 | 4.1 | AAATCTGAATTAATTAACATTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hupA | ||||
| Ortholog function: DNA-binding protein HU-alpha (HU-2) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4000 | -179 | 3.4 | AAACGTGATTTAACGCCTGATT |
| Citrobacter koseri ATCC BAA-895 | CKO_02986 | -179 | 3.4 | AAACGTGATTTAACGCCTGATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04382 | -179 | 3.4 | AAACGTGATTTACCGCCTGAAT |
| Enterobacter sp. 638 | Ent638_0213 | -179 | 3.5 | AAACGTGATTTAACGCCTGTTT |
| Yersinia pestis KIM | y0499 | -181 | 3.4 | AAACGTGATTTAACGCCTGATT |
| Serratia proteamaculans 568 | Spro_0290 | -181 | 3.4 | AAACGTGATTTAACGCCTCATT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0238 | -197 | 3.3 | AAACGTGATTTAAGGCCTGAAA |
| Edwardsiella tarda EIB202 | ETAE_0183 | -182 | 3.3 | AAACGTGATTTAACACCTGATT |
| Proteus mirabilis HI4320 | PMI2771 | -183 | 3.7 | AAACGTGATTTAGTGCTTGAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0492 | -179 | 3.4 | AAACGTGATTTAATGCTTTAAA |
|
Position: -2
Score: 3.6 Sequence: TAATGAAATTTTTTTCTAATTT
Locus tag: bbp059
|
||||
| bbp059 | -2 | 3.6 | TAATGAAATTTTTTTCTAATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: crr | ||||
| Ortholog function: PTS system, glucose-specific IIA component (EC 2.7.1.69) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2417 | -209 | 3.9 | TTTTATGATTTGGTTCAATTCT |
| Salmonella typhimurium LT2 | STM2433 | -209 | 4.4 | TTTTATGATTTGGTTCAAATCT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02764 | -206 | 4 | TTTTATGATTTGGTTCAAGTCT |
| Enterobacter sp. 638 | Ent638_2945 | -271 | 4.4 | TTTTGTGGTCCACTTCAAACTT |
| -144 | 4 | TTTTATGATTTGGTTCAAGTCT | ||
| Serratia proteamaculans 568 | Spro_3450 | -149 | 3.6 | TTTTTTGATCTGAAGTGCCAAA |
| Proteus mirabilis HI4320 | PMI1830 | -275 | 4.4 | TTTTGTGGTAGAGATCAAACTT |
| -115 | 3.6 | TAACGTAACATGGCTTATATTA | ||
|
Position: -178
Score: 3.7 Sequence: TTTTTTTAAAATAATCAAATTT
Locus tag: bbp061
|
||||
| bbp061 | -178 | 3.7 | TTTTTTTAAAATAATCAAATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ptsH | ||||
| Ortholog function: PTS system phosphocarrier protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2415 | -209 | 3.9 | TTTTATGATTTGGTTCAATTCT |
| Salmonella typhimurium LT2 | STM2431 | -209 | 4.4 | TTTTATGATTTGGTTCAAATCT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02762 | -206 | 4 | TTTTATGATTTGGTTCAAGTCT |
| Enterobacter sp. 638 | Ent638_2943 | -271 | 4.4 | TTTTGTGGTCCACTTCAAACTT |
| -144 | 4 | TTTTATGATTTGGTTCAAGTCT | ||
| Serratia proteamaculans 568 | Spro_3448 | -149 | 3.6 | TTTTTTGATCTGAAGTGCCAAA |
| Proteus mirabilis HI4320 | PMI1828 | -275 | 4.4 | TTTTGTGGTAGAGATCAAACTT |
| -115 | 3.6 | TAACGTAACATGGCTTATATTA | ||
|
Position: -187
Score: 3.9 Sequence: ATTTGTTAGTTTTATATCAAAT
Position: -46
Score: 4.2 Sequence: TGTTGTGATTACATTTAAATTT
Locus tag: bbp087
|
||||
| bbp087 | -187 | 3.9 | ATTTGTTAGTTTTATATCAAAT | |
| -46 | 4.2 | TGTTGTGATTACATTTAAATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: talA | ||||
| Ortholog function: Transaldolase (EC 2.2.1.2) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2464 | -83 | 4 | TTTTTTGATGCGTTTAGCGAAA |
| -53 | 3.9 | AAGTGTGAATTAACGCACTCAT | ||
| Salmonella typhimurium LT2 | STM2473 | -53 | 3.7 | AAGTGTGAATCAACACACTCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02798 | -80 | 3.7 | TTTGGTTATGTACCTCATCAAT |
| Enterobacter sp. 638 | Ent638_2959 | -152 | 3.6 | ATTTGTTATCAATTTATAACAA |
| -83 | 3.9 | TTTTGTTAAGTACGTCATGTAT | ||
|
Position: -52
Score: 3.6 Sequence: ATATATTATAGTGATCGTAATT
Locus tag: bbp088
|
||||
| bbp088 | -52 | 3.6 | ATATATTATAGTGATCGTAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tktB | ||||
| Ortholog function: Transketolase (EC 2.2.1.1) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2465 | -83 | 4 | TTTTTTGATGCGTTTAGCGAAA |
| -53 | 3.9 | AAGTGTGAATTAACGCACTCAT | ||
| Salmonella typhimurium LT2 | STM2474 | -53 | 3.7 | AAGTGTGAATCAACACACTCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02799 | -80 | 3.7 | TTTGGTTATGTACCTCATCAAT |
| Enterobacter sp. 638 | Ent638_2960 | -152 | 3.6 | ATTTGTTATCAATTTATAACAA |
| -83 | 3.9 | TTTTGTTAAGTACGTCATGTAT | ||
|
Position: -90
Score: 3.8 Sequence: ATTAATTATCTAATTCATATTA
Locus tag: bbp101
|
||||
| bbp101 | -90 | 3.8 | ATTAATTATCTAATTCATATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gnd | ||||
| Ortholog function: hypothetical protein | ||||
| Enterobacter sp. 638 | Ent638_2642 | -116 | 4 | CAGTGTGACATAGATCAGCAAA |
| Yersinia pestis KIM | y2629 | -78 | 3.8 | AGTTGTGCTATCTATCGCACCA |
| -76 | 3.6 | TTGTGCTATCTATCGCACCAAT | ||
| Serratia proteamaculans 568 | Spro_1608 | -297 | 3.7 | ATGCTTGAAGTGGCTCTCACTT |
| -72 | 4.2 | ACATGTGTGCCACATCACAAAA | ||
| Proteus mirabilis HI4320 | PMI0655 | -71 | 4.7 | CTATGTGATCAGGTTAACAAAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1560 | -74 | 4.4 | ACATGTGATCACATTAACAAAT |
|
Position: -21
Score: 3.6 Sequence: TTTTTTGAGGTGTAATAAATAA
Locus tag: bbp165
|
||||
| bbp165 | -21 | 3.6 | TTTTTTGAGGTGTAATAAATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pta | ||||
| Ortholog function: phosphate acetyltransferase | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02688 | -95 | 3.8 | AGGCATGATGTTAATCATAAAT |
| Enterobacter sp. 638 | Ent638_2841 | -96 | 3.8 | TGGCATGATGTTAATCATAAAT |
| Serratia proteamaculans 568 | Spro_3317 | -125 | 3.8 | TCACATGATGTTAATCATAAAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3040 | -95 | 4.2 | AGGTATGATGTTAATCATAAAT |
| Proteus mirabilis HI4320 | PMI1772 | -123 | 3.6 | AAGCATGATGCGTATCATTAAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3096 | -121 | 3.6 | TAGCATGATGTTAATCATTTAA |
|
Position: -4
Score: 3.6 Sequence: TTATATGAATGATATTATAAAA
Locus tag: bbp176
|
||||
| bbp176 | -4 | 3.6 | TTATATGAATGATATTATAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ydhD | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1654 | -132 | 3.6 | ATATTTGAAATGCAACAAATAG |
| Enterobacter sp. 638 | Ent638_1793 | -186 | 3.6 | TGAAGCGCTTTTGCTCACACTA |
| Erwinia amylovora ATCC 49946 | EAM_1665 | -145 | 3.9 | AAATGTTATTTTGTTATCATCT |
| Proteus mirabilis HI4320 | PMI1394 | -292 | 3.6 | TAATGTGCATTTATACACTTAT |
|
Position: -174
Score: 3.7 Sequence: ATTATTGATATGTATTTCACAT
Position: -172
Score: 3.9 Sequence: TATTGATATGTATTTCACATGT
Position: -135
Score: 3.6 Sequence: AATTTTACTATAAATCAAATAG
Locus tag: bbp178
|
||||
| bbp178 | -174 | 3.7 | ATTATTGATATGTATTTCACAT | |
| -172 | 3.9 | TATTGATATGTATTTCACATGT | ||
| -135 | 3.6 | AATTTTACTATAAATCAAATAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sodA | ||||
| Ortholog function: Manganese superoxide dismutase (EC 1.15.1.1) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3908 | -161 | 3.8 | GTGGGTGATTTGCTTCACATCT |
| Citrobacter koseri ATCC BAA-895 | CKO_03093 | -150 | 4.4 | ACGGGTGATTTGGCTCACATAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04217 | -150 | 4 | TTAGTTGTTCTACATCACAAAA |
| Enterobacter sp. 638 | Ent638_4063 | -160 | 3.6 | CCGCGTGAGCAGACTCACAATT |
| Proteus mirabilis HI4320 | PMI3036 | -292 | 3.7 | TTTTGCGCATAAGATCACGAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0075 | -297 | 3.7 | TTTTGCGCGGAAGATCACGCAA |
|
Position: -320
Score: 3.2 Sequence: TATTATGATTGTTTTTTAAAAC
Position: -238
Score: 3.1 Sequence: ATTTTTAATGAATGTAAATTTT
Position: -203
Score: 3.6 Sequence: TAGATTAATGTTATTAACATTT
Position: -198
Score: 3.2 Sequence: TAATGTTATTAACATTTTGAAT
Position: -167
Score: 3.2 Sequence: TAATGTTAAAATTATTTAATTA
Position: -136
Score: 3.1 Sequence: AATTTTGTTTTTTTACAATTAT
Position: -117
Score: 3.1 Sequence: TATTAATAATTTTTTCAAAAAT
Position: -97
Score: 3.1 Sequence: ATTTTTATAAAAGTTAACATTT
Position: -75
Score: 3.2 Sequence: AATATTAATAATTAGAACATTA
Locus tag: bbp189
|
||||
| bbp189 | -320 | 3.2 | TATTATGATTGTTTTTTAAAAC | |
| -238 | 3.1 | ATTTTTAATGAATGTAAATTTT | ||
| -203 | 3.6 | TAGATTAATGTTATTAACATTT | ||
| -198 | 3.2 | TAATGTTATTAACATTTTGAAT | ||
| -167 | 3.2 | TAATGTTAAAATTATTTAATTA | ||
| -136 | 3.1 | AATTTTGTTTTTTTACAATTAT | ||
| -117 | 3.1 | TATTAATAATTTTTTCAAAAAT | ||
| -97 | 3.1 | ATTTTTATAAAAGTTAACATTT | ||
| -75 | 3.2 | AATATTAATAATTAGAACATTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aceE | ||||
| Ortholog function: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0114 | -156 | 3.7 | AAACGTTATATATGTCAAGTTG |
| -131 | 3.8 | AAATGTGCACAGTTTCATGATT | ||
| Salmonella typhimurium LT2 | STM0152 | -157 | 3.5 | AAACATGATTTCTGTAAAATTG |
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| -79 | 3 | CTTATTAAGCTTTCTCACGAAA | ||
| -54 | 3.4 | TAATGGGACAGGTTCCAGATAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03259 | -180 | 3.2 | ATTTGTGCATAGTTACATCTTT |
| -157 | 3.1 | AAACGTTATTTCTGTAATCTTG | ||
| -148 | 3.3 | TTCTGTAATCTTGTTAAAATGT | ||
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00118 | -155 | 3.2 | AAATGTTATTTCTGTAAGGTTG |
| -118 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Enterobacter sp. 638 | Ent638_0660 | -120 | 3.2 | TTTACTGATTTCAATCAAAACC |
| -77 | 3.1 | TATTGTATTTTCTGGCGAAAAT | ||
| -68 | 3 | TTTAGCGATACGAATATGAAAT | ||
| Erwinia amylovora ATCC 49946 | EAM_0747 | -198 | 3.3 | TAAAGCGATCGGATTTAACAAT |
| Yersinia pestis KIM | y0767 | -151 | 4.2 | AAATGTGCTGGGTTTCATGATT |
| -139 | 3.3 | TTTCATGATTTCGGTCAAGGTC | ||
| -74 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Serratia proteamaculans 568 | Spro_4011 | -132 | 3.1 | AAATGTGCGGGTAACCTGATTT |
| -56 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3789 | -120 | 3.7 | ATTGGTGATTTAGCTCAAGGTC |
| -55 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Edwardsiella tarda EIB202 | ETAE_0659 | -143 | 3.2 | TTTCATGATTTACATCAATAGT |
| Proteus mirabilis HI4320 | PMI2046 | -218 | 3.1 | TGTTTTTAATCTTTTCTAATAA |
| -199 | 4.4 | TAATGCGATCTAGTTATCAAAT | ||
| -181 | 4.2 | AAATTTGATGAATTTATCAAAT | ||
| -158 | 3 | ATTTGTTAAAATTTGCAGGTTT | ||
| -138 | 3.9 | TTTTATGATTTCGCTCAACAAC | ||
| -95 | 3.1 | CTTTGTTACTTTATTATCCATT | ||
| -89 | 3.1 | TACTTTATTATCCATTACATTA | ||
|
Position: -113
Score: 4.1 Sequence: TTTTGTGATATTAATAACTCTC
Position: -36
Score: 3.3 Sequence: TGTTTTGAATTTAATAATCTTT
Position: -21
Score: 3.5 Sequence: AATCTTTATATAGGTAAAAAAA
Locus tag: bbp191
|
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| bbp191 | -113 | 4.1 | TTTTGTGATATTAATAACTCTC | |
| -36 | 3.3 | TGTTTTGAATTTAATAATCTTT | ||
| -21 | 3.5 | AATCTTTATATAGGTAAAAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lpdA | ||||
| Ortholog function: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0116 | -224 | 3.3 | AATTGTTAACAATTTTGTAAAA |
| Salmonella typhimurium LT2 | STM0154 | -153 | 3.5 | GTTTGTGAGGTTATTAGCGAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03256 | -95 | 3.3 | AATTGTTAACAATTTTGTAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00120 | -105 | 3.3 | AATTGTTAACAATTTTGTAAAA |
| Yersinia pestis KIM | y0769 | -253 | 3.3 | ATTGGTGATCTTGTTATTACTG |
| Serratia proteamaculans 568 | Spro_4009 | -246 | 3.6 | TATGGTGATGTAATGAAAAAAG |
| Proteus mirabilis HI4320 | PMI2044 | -133 | 3.4 | GGTTGTGAGATCTGTCATGTTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3621 | -131 | 3.9 | TGTTGCGAGTTCTGTCACGTTA |
|
Position: -237
Score: 3.8 Sequence: AATTTTTATATTTATAAAACAT
Locus tag: bbp248
|
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| bbp248 | -237 | 3.8 | AATTTTTATATTTATAAAACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ychE | ||||
| Ortholog function: putative channel protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1242 | -257 | 5.1 | TTACGTGATCCAAATCAAATTT |
| Salmonella typhimurium LT2 | STM1748 | -256 | 4.8 | TTGTGTGATCTAAATCAAGATT |
| Citrobacter koseri ATCC BAA-895 | CKO_01319 | -167 | 5 | TTGCGTGATCCAGATCAAATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02198 | -261 | 4.8 | TTACGTGATTTAGATCAAGTAT |
| Enterobacter sp. 638 | Ent638_2303 | -256 | 4 | AAACATGATCTGAATCAATTTA |
| Erwinia amylovora ATCC 49946 | EAM_1899 | -158 | 3.8 | AAAGATGATGCAGATCATCAAT |
| Serratia proteamaculans 568 | Spro_2703 | -268 | 5.2 | TTTTGTGATTTAAATCATAAAA |
| Proteus mirabilis HI4320 | PMI1485 | -290 | 5.3 | TAAAGTGATCTACATCACAATA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2495 | -295 | 4.9 | TATATTGATCTTAATCACATAA |
|
Position: -82
Score: 3.5 Sequence: AATTTTGTTTGAAATTAAAATA
Locus tag: bbp249
|
||||
| bbp249 | -82 | 3.5 | AATTTTGTTTGAAATTAAAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lipB | ||||
| Ortholog function: Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0630 | -94 | 3.6 | AAGTGTAATTTCCGTCCCCATA |
| Salmonella typhimurium LT2 | STM0635.S | -93 | 4.2 | AAGTGTGATTTTCGTCCCCATA |
| -35 | 3.9 | AGTTGTTATTTTTTTTACGTAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02528 | -91 | 4.4 | AAGTGTGATTTCCATCCCCATA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00662 | -97 | 4.4 | AAGTGTGATTTCCATCCCCATA |
| Enterobacter sp. 638 | Ent638_1165 | -90 | 4.4 | AAGTGTGATTTCCATCCCCATA |
| Yersinia pestis KIM | y1173 | -146 | 4.2 | TATTGTGATTAATCTTATATTG |
|
Position: -51
Score: 3.6 Sequence: ATTACTAATTTATTTAACATTT
Locus tag: bbp298
|
||||
| bbp298 | -51 | 3.6 | ATTACTAATTTATTTAACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: zwf | ||||
| Ortholog function: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1852 | -208 | 3.9 | TAACATGATCAGTGTCAGATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02367 | -225 | 3.8 | TTACATGATCAGGGTCGTATTT |
| Yersinia pestis KIM | y2244 | -231 | 4.1 | TAATATGACCTGTGTCTAATTT |
| Proteus mirabilis HI4320 | PMI1157 | -225 | 3.7 | AAGTATGACCTGTGTCTAACTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2122 | -234 | 4.2 | TAATTTAATGTTTTTCATAAAA |
|
Position: -60
Score: 3.8 Sequence: TATTTTAAGTTTTATCATAAAA
Locus tag: bbp371
|
||||
| bbp371 | -60 | 3.8 | TATTTTAAGTTTTATCATAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rpiA | ||||
| Ortholog function: Ribose 5-phosphate isomerase A (EC 5.3.1.6) | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03349 | -82 | 3.9 | TTGTGTGATCTGCATCGCAGGG |
| Enterobacter sp. 638 | Ent638_3333 | -47 | 3.8 | TAATGTGACACCGGTCACAGGG |
| Yersinia pestis KIM | y3302 | -114 | 4.2 | AACTGTGATCTCGCTAGAATTA |
| Edwardsiella tarda EIB202 | ETAE_2950 | -276 | 4 | TTTTGTTATGTATAAAACGTTA |
| Proteus mirabilis HI4320 | PMI2032 | -96 | 3.8 | TAAAATGTTGTGTCTCAAATTT |
|
Position: -37
Score: 4.3 Sequence: AATTGTGATAAATAAAAAATTT
Locus tag: bbp415
|
||||
| bbp415 | -37 | 4.3 | AATTGTGATAAATAAAAAATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyoC | ||||
| Ortholog function: cytochrome o ubiquinol oxidase subunit III | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0430 | -245 | 3.8 | ATAATTGTTTTATTTCACATTG |
| Erwinia amylovora ATCC 49946 | EAM_0983 | -134 | 4 | AGTTGTGACAGCGTTTGCAAAA |
| Yersinia pestis KIM | y1019 | -137 | 4.5 | ATCTGTGACCCCCTTAACATAA |
| Serratia proteamaculans 568 | Spro_1088 | -135 | 4.2 | ATCTGTGACCCCCTTAACAGAA |
| Proteus mirabilis HI4320 | PMI0106 | -194 | 3.6 | AAATTATAGTTAATTCACAATA |
| -147 | 3.6 | TTAATTACTTGTGATCACATTA | ||
| -141 | 4.3 | ACTTGTGATCACATTAACACAA | ||
|
Position: -144
Score: 3.8 Sequence: ATTTTTAAAATTTATCAAAAAA
Locus tag: bbp432
|
||||
| bbp432 | -144 | 3.8 | ATTTTTAAAATTTATCAAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybeD | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0631 | -94 | 3.6 | AAGTGTAATTTCCGTCCCCATA |
| Salmonella typhimurium LT2 | STM0636 | -93 | 4.2 | AAGTGTGATTTTCGTCCCCATA |
| -35 | 3.9 | AGTTGTTATTTTTTTTACGTAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02527 | -91 | 4.4 | AAGTGTGATTTCCATCCCCATA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00663 | -97 | 4.4 | AAGTGTGATTTCCATCCCCATA |
| Enterobacter sp. 638 | Ent638_1166 | -90 | 4.4 | AAGTGTGATTTCCATCCCCATA |
| Yersinia pestis KIM | y1174 | -146 | 4.2 | TATTGTGATTAATCTTATATTG |
|
Position: -209
Score: 3.7 Sequence: AAATTTTATTTTTTTTACGAAA
Locus tag: bbp433
|
||||
| bbp433 | -209 | 3.7 | AAATTTTATTTTTTTTACGAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cspE | ||||
| Ortholog function: cold shock protein E | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0623 | -114 | 4 | TAACGCGACTTTTATCACTTTT |
| Salmonella typhimurium LT2 | STM0629 | -114 | 4.3 | TAACGCGATATTTATCACTTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02534 | -21 | 4.3 | TAACGCGATATTTATCACTTTT |
| Enterobacter sp. 638 | Ent638_1159 | -114 | 3.8 | TAACGCGACTTTTGTCACTTTT |
| Erwinia amylovora ATCC 49946 | EAM_1116 | -113 | 3.6 | AAAAACGATATTTATCACTTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1294 | -113 | 3.9 | TTTAGCGACTTTTATCACTTTT |
|
Position: -77
Score: 3.8 Sequence: AATTTTTATTTTCGTAAAATTT
Position: -39
Score: 4.2 Sequence: AATTGTGAATTGTAATACAAAA
Locus tag: bbp518
|
||||
| bbp518 | -77 | 3.8 | AATTTTTATTTTCGTAAAATTT | |
| -39 | 4.2 | AATTGTGAATTGTAATACAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pgi | ||||
| Ortholog function: Glucose-6-phosphate isomerase (EC 5.3.1.9) | ||||
| Salmonella typhimurium LT2 | STM4221 | -61 | 3.7 | TTCTGTGACTGGCGTTACAATC |
| Citrobacter koseri ATCC BAA-895 | CKO_03893 | -61 | 4.1 | TTTTGTGACTGGCGTTACAATC |
| Serratia proteamaculans 568 | Spro_4477 | -80 | 3.7 | AAAAGAGATCATAATCACAGTC |
| Proteus mirabilis HI4320 | PMI2754 | -245 | 3.7 | CAGTGAGATGTTAAACACAGTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4379 | -205 | 3.8 | TGACGCGATGAGAATCATAAAA |