Propagation of ArgR regulog to Xenorhabdus bovienii SS-2004
| Source regulog: | ArgR - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | ArgR |
| Regulation mode: | repressor |
| Biological process: | Arginine biosynthesis; Arginine degradation |
| Effector: | Arginine |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Xenorhabdus bovienii SS-2004 |
| Orthologous TF(s) | XBJ1_0348 |
| Regulated genes | 8 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -64
Score: 5 Sequence: CTTGAATAAAAATTCACT
Locus tag: XBJ1_0348
|
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| XBJ1_0348 | -64 | 5 | CTTGAATAAAAATTCACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argR | ||||
| Ortholog function: arginine repressor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3237 | -62 | 4.9 | TTTGCATAAAAATTCATC |
| Salmonella typhimurium LT2 | STM3360 | -64 | 4.9 | TTTGCATAAAAATTCATC |
| Citrobacter koseri ATCC BAA-895 | CKO_04642 | -64 | 4.9 | TTTGCATAAAAATTCATC |
| -44 | 4 | TATGCATAATAATGTTGT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03645 | -64 | 4.8 | TTTGCATAAAAATTCATG |
| Enterobacter sp. 638 | Ent638_3672 | -63 | 5.3 | TTTGCATAAAAATTCATT |
| -53 | 4.1 | AATTCATTTACATGCATA | ||
| Erwinia amylovora ATCC 49946 | EAM_3122 | -83 | 5.3 | TTTGCATAAAAATTCATT |
| -63 | 4.7 | ATTGCATAATAATGTAAA | ||
| Yersinia pestis KIM | y0667 | -66 | 5 | GTTGAATAAAAATTCATT |
| -56 | 4.5 | AATTCATTTATATGCATA | ||
| Serratia proteamaculans 568 | Spro_0468 | -64 | 5.4 | ATTGCATAAAAATTCATT |
| -54 | 4.5 | AATTCATTTATATGCATA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0684 | -65 | 5.3 | ATTGCATAAAAATTCACA |
| Edwardsiella tarda EIB202 | ETAE_0384 | -61 | 4.9 | ATTGCATAAAAATTCACG |
| Proteus mirabilis HI4320 | PMI3399 | -64 | 4.9 | GTTGCATAAAAATTCACT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4548 | -84 | 3.9 | ATTGGCTATAAAATCATT |
| -63 | 5.4 | ATTGCATAAAAATTCATT | ||
|
Position: -43
Score: 5.6 Sequence: ATTGAATATAAATTCAAT
Locus tag: XBJ1_0427
|
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| XBJ1_0427 | -43 | 5.6 | ATTGAATATAAATTCAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argF | ||||
| Ortholog function: ornithine carbamoyltransferase | ||||
| Salmonella typhimurium LT2 | STM4469 | -66 | 4.3 | AATGAATAATCATCCATA |
| -45 | 5.4 | AGTGAATTTTAATTCAAT | ||
| Yersinia pestis KIM | y0740 | -111 | 4.5 | ATTGAATATTTATACCTA |
| -90 | 5.4 | ATTGAATTTAAATTCATA | ||
| Serratia proteamaculans 568 | Spro_0554 | -62 | 4.8 | ATTGAATATTCATACATA |
| -41 | 5.5 | AGTGAATTTAAATTCAAT | ||
| Proteus mirabilis HI4320 | PMI3457 | -55 | 4 | GATGAATATTTATTGTAT |
| -34 | 5.6 | ATTGAATATAAATTCAAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4490 | -63 | 4.5 | ATTGCATTTTTATAGATA |
| -42 | 5.4 | ATTGAATTTAAATGCAAA | ||
|
Position: -63
Score: 4.5 Sequence: ATTGCATAGTTATTCTTA
Position: 6
Score: 4.1 Sequence: ATTCAATTAAAAAACATA
Locus tag: XBJ1_0902
|
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| XBJ1_0902 | -63 | 4.5 | ATTGCATAGTTATTCTTA | |
| 6 | 4.1 | ATTCAATTAAAAAACATA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: artP | ||||
| Ortholog function: arginine ABC transporter, ATP-binding protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0864 | -73 | 4.9 | ATTGCATAATTATTCTGT |
| -5 | 4 | TGTCAATGAGTATTCAAT | ||
| Salmonella typhimurium LT2 | STM0891 | -73 | 4 | ATTGCATAACTATTCTGC |
| -5 | 4 | TGTCAATGAGTATTCAAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02239 | -190 | 4.5 | ATTGCATAACTATTCTGT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00897 | -67 | 4 | ATTGCATAACTATTCTGC |
| Enterobacter sp. 638 | Ent638_1380 | -79 | 4.5 | ATTGCATAACTATTCTGT |
| Erwinia amylovora ATCC 49946 | EAM_1311 | -83 | 3.8 | AATAAATTTTAACGCACA |
| -62 | 4.5 | ATTGCATAACTATTCTGT | ||
| Yersinia pestis KIM | y2829 | -136 | 3.7 | AGCGCAATCAAATACAAA |
| -62 | 4.1 | ATTGCATAAGTATGCCGT | ||
| Serratia proteamaculans 568 | Spro_1656 | -83 | 3.8 | AATAAATTTTAACGCACA |
| -62 | 4.5 | ATTGCATAAGTATTCTGT | ||
| -26 | 4 | CATCAATATCTATTCAAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2667 | -62 | 4 | ATTGCATAACTATTCTGC |
| Edwardsiella tarda EIB202 | ETAE_2230 | -17 | 4.4 | ATTGCATAGTTATTCTGA |
| Proteus mirabilis HI4320 | PMI0682 | -85 | 3.7 | AGCAATTTTTTATGCACT |
| -63 | 4.4 | GTTGCATAATTATTCTCA | ||
| -26 | 4 | AGTTAATGACTATTCAAA | ||
| -5 | 4.1 | AACGCATGAGTATTCAAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1588 | -169 | 4.2 | ATAGAATAAATAAGCTTT |
| -63 | 4.8 | ATTGCATAATTATACTAA | ||
| -5 | 4.2 | AAAGCATGAGTATTCAAT | ||
|
Position: -123
Score: 4.6 Sequence: TCTGAATTAATATGCATC
Locus tag: XBJ1_1721
|
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| XBJ1_1721 | -123 | 4.6 | TCTGAATTAATATGCATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: carA | ||||
| Ortholog function: carbamoyl-phosphate synthase small subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0032 | -49 | 5.2 | TGTGAATTAATATGCAAA |
| -28 | 3.9 | AGTGAGTGAATATTCTCT | ||
| Salmonella typhimurium LT2 | STM0066 | -49 | 5.3 | AATGAATTAATATGCAAA |
| -28 | 3.9 | AGTGAGTGAATATTCTCT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03351 | -22 | 5.3 | AATGAATTAATATGCAAA |
| -1 | 3.9 | AGTGAGTGAATATTCTCT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00040 | -22 | 5.2 | TATGAATTAATATGCAAA |
| Enterobacter sp. 638 | Ent638_0591 | -49 | 5 | TGTGAATTAATATGCAGA |
| -28 | 3.9 | AGTGAGTGAATATTCTTT | ||
| Erwinia amylovora ATCC 49946 | EAM_0660 | -49 | 4.5 | CCTGAATTAATATGCAGA |
| Yersinia pestis KIM | y3693 | -22 | 5 | TATGAATTAATATGCAGA |
| Serratia proteamaculans 568 | Spro_0713 | -49 | 5.1 | TCTGAATTAATATGCAAA |
| -28 | 3.8 | TGTGATTGATTATTCCTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3871 | -49 | 5.1 | TCTGAATTAATATGCAAA |
| Edwardsiella tarda EIB202 | ETAE_0593 | -128 | 5 | TCTGAATTAATATGCATA |
| Proteus mirabilis HI4320 | PMI0020 | -49 | 4.6 | TCTGAATTAATATGCATG |
| -28 | 4.4 | TGTGATTTATTATTCTCT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0603 | -49 | 5.1 | TCTGAATTAATATGCACT |
|
Position: -311
Score: 4 Sequence: TTTTTCTTTTAATTCAAA
Locus tag: XBJ1_3852
|
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| XBJ1_3852 | -311 | 4 | TTTTTCTTTTAATTCAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltB | ||||
| Ortholog function: glutamate synthase, large subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3212 | -484 | 4.4 | ACTGCATAATCAATCAAA |
| -463 | 3.8 | ACCGAAATTTCATGCATA | ||
| Salmonella typhimurium LT2 | STM3330 | -574 | 4.5 | ATTGCATAATCAAGCAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04620 | -540 | 4.5 | ATTGCATAATCAAGCAAA |
| -519 | 3.9 | ACCGCAATTTCATTCACT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03624 | -536 | 3.8 | AATGAAATATATTTCAGC |
| Enterobacter sp. 638 | Ent638_3656 | -495 | 4.1 | TTTGAATAAAAACCCACT |
| -474 | 4.1 | ATTGCAATTTCATTCACC | ||
| Yersinia pestis KIM | y0128 | -590 | 3.7 | ATTCATCATAAATGCAAA |
| -580 | 3.8 | AATGCAAATAAAACCACT | ||
| Serratia proteamaculans 568 | Spro_4344 | -586 | 4.4 | ATTCATTATAAATGCAAA |
| -576 | 4.4 | AATGCAAATAAAATCACT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0312 | -563 | 4.8 | AATGCATTTTTATTCGCT |
| Edwardsiella tarda EIB202 | ETAE_0527 | -584 | 4.3 | TCTGTATCAAAATTCACT |
| -563 | 4.8 | AGTGACTTTAAATTCATT | ||
| Proteus mirabilis HI4320 | PMI3677 | -275 | 4.5 | AATGAAATAATTTTCAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4009 | -562 | 4.5 | CATGAATAAATAATCAAA |
| -541 | 3.9 | ATTGACAAAATAAGCATA | ||
|
Position: -56
Score: 5.5 Sequence: ATTGAATATAAATGCAAT
Locus tag: XBJ1_4271
|
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| XBJ1_4271 | -56 | 5.5 | ATTGAATATAAATGCAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argC | ||||
| Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3958 | -127 | 4.1 | TATCAATATTCATGCAGT |
| -106 | 5 | TATGAATAAAAATACACT | ||
| Salmonella typhimurium LT2 | STM4121 | -62 | 4.2 | TATCAATATTCATGCATT |
| -41 | 5 | TATGAATAAAAATACATT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03036 | -128 | 4.2 | TATCAATATTCATGCATT |
| -107 | 5 | TGTGAATAAAAATACATT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04247 | -87 | 4.2 | TATCAATATTCATGCATT |
| -66 | 5.3 | TTTGAATAAAAATACAAT | ||
| Enterobacter sp. 638 | Ent638_4028 | -62 | 4.2 | TATCAATATTCATGCACT |
| -41 | 5 | TGTGAATAAAAATACACT | ||
| Yersinia pestis KIM | y0310 | -219 | 4.1 | TATCAATATTCATGCAGT |
| -198 | 4.9 | TATGAATAAAAATACAGT | ||
| -65 | 4.5 | TATGTTTTTATATGCATA | ||
| Serratia proteamaculans 568 | Spro_4781 | -185 | 4.2 | TATCAATATTCATGCATT |
| -164 | 5.1 | TGTGAATAAAAATACAAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0192 | -177 | 4.2 | TATCAATATTCATGCATT |
| -156 | 5.3 | TTTGAATAAAAATACAAT | ||
| Edwardsiella tarda EIB202 | ETAE_3482 | -178 | 4.3 | TATCAATATTCATGCAAT |
| -157 | 5.2 | TATGAATAAAAATACAAT | ||
| Proteus mirabilis HI4320 | PMI3237 | -75 | 4.2 | TATCAATATTCATGCACT |
| -54 | 5.2 | TTTGAATAAAAATACATT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4744 | -77 | 4.2 | TATCAATATTCATGCATT |
| -56 | 5.2 | TTTGAATAAAAATACATT | ||
|
Position: -64
Score: 5.5 Sequence: ATTGCATTTATATTCAAT
Locus tag: XBJ1_4272
|
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| XBJ1_4272 | -64 | 5.5 | ATTGCATTTATATTCAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argE | ||||
| Ortholog function: acetylornithine deacetylase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3957 | -65 | 5 | AGTGTATTTTTATTCATA |
| -44 | 4.1 | ACTGCATGAATATTGATA | ||
| Salmonella typhimurium LT2 | STM4120 | -65 | 5 | AATGTATTTTTATTCATA |
| -44 | 4.2 | AATGCATGAATATTGATA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03037 | -26 | 5 | AATGTATTTTTATTCACA |
| -5 | 4.2 | AaTGcATgaATATTgAta | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04246 | -26 | 5.3 | ATTGTATTTTTATTCAAA |
| -4 | 4.2 | AaTGcATgaATATTgAta | ||
| Enterobacter sp. 638 | Ent638_4029 | -65 | 5 | AGTGTATTTTTATTCACA |
| -44 | 4.2 | AGTGCATGAATATTGATA | ||
| Erwinia amylovora ATCC 49946 | EAM_0137 | -65 | 5.2 | ATTGTATTTTTATTCACT |
| -44 | 4.2 | AATGCATGAATATTGATA | ||
| Yersinia pestis KIM | y0309 | -197 | 4.5 | TATGCATATAAAAACATA |
| -64 | 4.9 | ACTGTATTTTTATTCATA | ||
| -43 | 4.1 | ACTGCATGAATATTGATA | ||
| Serratia proteamaculans 568 | Spro_4782 | -70 | 5.1 | ATTGTATTTTTATTCACA |
| -49 | 4.2 | AATGCATGAATATTGATA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0191 | -64 | 5.3 | ATTGTATTTTTATTCAAA |
| -43 | 4.2 | AATGCATGAATATTGATA | ||
| Edwardsiella tarda EIB202 | ETAE_3483 | -64 | 5.2 | ATTGTATTTTTATTCATA |
| -43 | 4.3 | ATTGCATGAATATTGATA | ||
| Proteus mirabilis HI4320 | PMI3236 | -64 | 5.2 | AATGTATTTTTATTCAAA |
| -43 | 4.2 | AGTGCATGAATATTGATA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4745 | -64 | 5.2 | AATGTATTTTTATTCAAA |
| -43 | 4.2 | AATGCATGAATATTGATA | ||