Propagation of Crp regulog to Xenorhabdus bovienii SS-2004

Reference regulog properties
Source regulog:	Crp - Enterobacteriales
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	activator (repressor)
Biological process:	Carbon catabolism
Effector:	Cyclic 3',5'-AMP
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Xenorhabdus bovienii SS-2004
Orthologous TF(s)	XBJ1_4089
Regulated genes	169

Built upon 2301 sites [see more]

Predicted regulatory interactions in *Xenorhabdus bovienii SS-2004*
	Locus tag	Position	Score	Sequence
Position: -316 Score: 4.4 Sequence: ATAAATGATTTTTATCACAGAT Position: -263 Score: 5.4 Sequence: AAATGTGATATACATCACGTTT Position: -197 Score: 3.6 Sequence: ATTTGTGAGCAATCTACCATCA Locus tag: XBJ1_0029
	XBJ1_0029	-316	4.4	ATAAATGATTTTTATCACAGAT
		-263	5.4	AAATGTGATATACATCACGTTT
		-197	3.6	ATTTGTGAGCAATCTACCATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpI
Ortholog function: ATP synthase subunit I
Escherichia coli str. K-12 substr. MG1655	b3739	-263	4.8	ATATGTGATCTGAAGCACGCTT
Salmonella typhimurium LT2	STM3872	-262	4.6	ATGTGTGATCTGGTGCACGCTT
		-211	4.1	TTTTGTACGATCGTTCACACTT
Citrobacter koseri ATCC BAA-895	CKO_00079	-262	4.7	ATATGTGATCCGAAGCACGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04144	-262	4.7	TTATGTGATCTGATGCACGCTT
Enterobacter sp. 638	Ent638_4125	-261	4.8	TTTTGTGATCTCGTGCACGCTT
Erwinia amylovora ATCC 49946	EAM_3481	-264	4.4	ATTTGTGATCGTGGACACGCTT
Yersinia pestis KIM	y4142	-263	5.4	TTATGTGATGTATTTCACGTTT
Serratia proteamaculans 568	Spro_0001	-265	4.4	TATTGTGAGCAACTACACGTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4519	-254	5	TTATGTGAGTCACATCACAGAT
Edwardsiella tarda EIB202	ETAE_3526	-297	3.7	AATCGTGAAAATATTTAAATTA
Proteus mirabilis HI4320	PMI3057	-259	5	TTGTGTGTTCTAGATCACATTA
Photorhabdus luminescens subsp. laumondii TTO1	plu0047	-265	5.7	TTATGTGATTTAAATCACATTT

Position: -98 Score: 4.2 Sequence: ATGCGTGATCTTCCGCGCAAAA Locus tag: XBJ1_0050
	XBJ1_0050	-98	4.2	ATGCGTGATCTTCCGCGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: acs
Ortholog function: acetyl-coenzyme A synthetase
Escherichia coli str. K-12 substr. MG1655	b4069	-100	4.1	TTGCGTGATCTGTCGCCCAAAT
Salmonella typhimurium LT2	STM4275	-100	4.1	TTGCGTGATCTGTCGCCCAAAT
Citrobacter koseri ATCC BAA-895	CKO_03816	-101	4.3	TTGCGTGATCTGCCGCGCAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04478	-101	3.9	TTGCGTGATCTGCCCCCCAATT
Enterobacter sp. 638	Ent638_0276	-101	4.1	TTGCGTGATCTGTCGCCCAAAT
Yersinia pestis KIM	y0510	-97	4.2	ATACGTGATCTGCCGCCCAAAA
Serratia proteamaculans 568	Spro_0297	-97	4	TTGCGTGATCTGCCGCCCAAAA
Proteus mirabilis HI4320	PMI3037	-97	4.5	TTTCGTGATCTTATGCGCAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu0074	-98	4.2	TTGCGTGATCTTCCGCGCAAAA

Position: -295 Score: 3.7 Sequence: TTTTGCGCGGAAGATCACGCAT Locus tag: XBJ1_0051
	XBJ1_0051	-295	3.7	TTTTGCGCGGAAGATCACGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sodA
Ortholog function: Manganese superoxide dismutase (EC 1.15.1.1)
Escherichia coli str. K-12 substr. MG1655	b3908	-161	3.8	GTGGGTGATTTGCTTCACATCT
Citrobacter koseri ATCC BAA-895	CKO_03093	-150	4.4	ACGGGTGATTTGGCTCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04217	-150	4	TTAGTTGTTCTACATCACAAAA
Enterobacter sp. 638	Ent638_4063	-160	3.6	CCGCGTGAGCAGACTCACAATT
Proteus mirabilis HI4320	PMI3036	-292	3.7	TTTTGCGCATAAGATCACGAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu0075	-297	3.7	TTTTGCGCGGAAGATCACGCAA

Position: -167 Score: 3.6 Sequence: TTTTGTTAATAACATTAAAAAT Locus tag: XBJ1_0068
	XBJ1_0068	-167	3.6	TTTTGTTAATAACATTAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: igaA
Ortholog function: IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system
Escherichia coli str. K-12 substr. MG1655	b3398	-288	3.6	TTGTGCGATATCGGACACGCTT
		-123	3.8	TACTGTGATGTGCTTAATGATG
Salmonella typhimurium LT2	STM3495	-238	3.6	TTATGTAACGTAATAAAAATTA
Citrobacter koseri ATCC BAA-895	CKO_04821	-290	3.9	TTGTGCGATATACAGCACGGTT
		-238	3.7	TTATGTAACGTAGTAAAAATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03769	-282	3.8	TTGTGCGATACGCAACACGCTT
Enterobacter sp. 638	Ent638_3811	-287	3.7	TTGTGCGATATGACGCACGGTT
Yersinia pestis KIM	y3922	-186	3.7	TATTGTGACTGCGTTAGCTTTG

Position: -83 Score: 3.7 Sequence: TTTTTTGATAACAATCGCTGTT Locus tag: XBJ1_0071
	XBJ1_0071	-83	3.7	TTTTTTGATAACAATCGCTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pck
Ortholog function: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Escherichia coli str. K-12 substr. MG1655	b3403	-240	4.2	GAATGCGATTCCACTCACAATA
		-137	4	TTTCGTGACAGGAATCACGGAG
Salmonella typhimurium LT2	STM3500	-241	4	GAATGCGATTACAGTCACATTA
		-107	3.9	AATCGTGATTTTGTCCAGATAC
Citrobacter koseri ATCC BAA-895	CKO_04825	-107	3.9	AATCGTGATTTTGTCCAGATAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03773	-242	3.7	GAAAGCGATTACATTCACATTT
		-138	3.7	CTTCGTGACAGGAGTCACCGTT
Enterobacter sp. 638	Ent638_3816	-241	4.1	GTATGCGATTACATTCACATTA
Yersinia pestis KIM	y3918	-130	4.2	ATTCGTGTTCCATCTCTCATAA
		-80	3.8	ATATTTGATAGCTATCGCTGTT
Serratia proteamaculans 568	Spro_4617	-80	4.1	ATATTTGATACCTATCGCGGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4106	-81	4	TTTTATGATTGCTATCGCGGTT
Edwardsiella tarda EIB202	ETAE_3277	-82	3.9	TTTTTTGATGACTATCTCGGTT
Proteus mirabilis HI4320	PMI3015	-131	4	ATTTGTGCATTAGTTCTCGTTA
Photorhabdus luminescens subsp. laumondii TTO1	plu0100	-86	3.8	TTTTTTGATAACTATCGCTGTT

Position: -116 Score: 4.2 Sequence: AGTTGTGATCAAAACAACACTA Locus tag: XBJ1_0090
	XBJ1_0090	-116	4.2	AGTTGTGATCAAAACAACACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uspA3
Ortholog function: Universal stress protein A
Enterobacter sp. 638	Ent638_3909	-195	3.8	AAAGTCGATCGGGTTCACGTTT
Yersinia pestis KIM	y3859	-151	3.6	ATTAGTGATCATTGTCAAAACC
Serratia proteamaculans 568	Spro_4691	-123	4	CAGTGTGATCGCCTCAACATAT
Proteus mirabilis HI4320	PMI3009	-290	3.6	AGTTGTTCGCTTTTTCAAAAAA
		-113	3.8	AGTTGTGATCAAGGCAACATCT

Position: -172 Score: 4.3 Sequence: AAATGTGATCCAAAACTCAAAC Locus tag: XBJ1_0098
	XBJ1_0098	-172	4.3	AAATGTGATCCAAAACTCAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: treB
Ortholog function: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655	b4240	-101	3.8	AATTGTGATCTTCGCTGCGTTT
Citrobacter koseri ATCC BAA-895	CKO_03571	-156	3.8	ATTTGTGATCTTCGCTGCGTTT
Enterobacter sp. 638	Ent638_0439	-106	4	TATTGTGATCTTCACCCGATTT
Serratia proteamaculans 568	Spro_0529	-124	3.8	TTTTGTGATCCTCGCCCCAAAC
Photorhabdus luminescens subsp. laumondii TTO1	plu3288	-127	4.3	CAATGTGATCTTCAACCCATTT

Position: -133 Score: 4.7 Sequence: TATTGTGATGTGTACTACAAAT Position: -62 Score: 3.7 Sequence: TTATGTAAAATGATTCATTTTT Locus tag: XBJ1_0127
	XBJ1_0127	-133	4.7	TATTGTGATGTGTACTACAAAT
		-62	3.7	TTATGTAAAATGATTCATTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaA
Ortholog function: predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation
Escherichia coli str. K-12 substr. MG1655	b1388	-97	4.3	ATTTGTGATTTTACTTAACTAT
		-76	3.6	TTGTGTAACTTTCATAAAACAA
		-45	3.6	TGTTTTTAATTAATTCACGAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01469	-197	3.8	CATTGTGATCGCGATGGCGTTA
		-131	3.7	TTTTGCGGAGATTATCACAAAA
Serratia proteamaculans 568	Spro_3072	-134	3.8	ACCTGTGAGTAACATCGCAAAA
		-63	3.8	TTAGTTAACGTGATTCACATTT

Position: -284 Score: 3.7 Sequence: AAAAATGAATCATTTTACATAA Position: -213 Score: 4.3 Sequence: ATTTGTAGTACACATCACAATA Position: -74 Score: 3.7 Sequence: TAATGGGATATATGATACATAA Position: -20 Score: 3.7 Sequence: ATTTGTTAGGTGGAGAAAAAAT Locus tag: XBJ1_0128
	XBJ1_0128	-284	3.7	AAAAATGAATCATTTTACATAA
		-213	4.3	ATTTGTAGTACACATCACAATA
		-74	3.7	TAATGGGATATATGATACATAA
		-20	3.7	ATTTGTTAGGTGGAGAAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaN
Ortholog function: Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase (EC 1.2.1.3)
Escherichia coli str. K-12 substr. MG1655	b1387	-261	3.6	TTTCGTGAATTAATTAAAAACA
		-175	3.7	AACTGTGACGGATTTCGCACCC
		-109	3.8	AGTTGCTATACAGATCGCATAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01468	-246	3.3	TTATGTGAATCACTTTGTTTAT
		-177	4.4	TTTTGTGATAATCTCCGCAAAA
Serratia proteamaculans 568	Spro_3071	-277	3.8	AAATGTGAATCACGTTAACTAA
		-206	4	TTTTGCGATGTTACTCACAGGT

Position: -40 Score: 3.6 Sequence: CTGTGCGATTAACTTCAACTTA Locus tag: XBJ1_0141
	XBJ1_0141	-40	3.6	CTGTGCGATTAACTTCAACTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpG
Ortholog function: predicted intramembrane serine protease
Escherichia coli str. K-12 substr. MG1655	b3424	-95	4.7	TAGAGTGATATGTATAACATTA
Salmonella typhimurium LT2	STM3524	-104	4.7	TAGAGTGATATGTATAACATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03790	-107	4.3	TGAAGTGATGGGTGTAACATAT
Enterobacter sp. 638	Ent638_3833	-257	3.8	ATGTTCGATATCGCTCATAATA
		-196	4.6	TTGAGTGATAGAGATAACATAA
Erwinia amylovora ATCC 49946	EAM_3263	-134	3.9	ATGCGTGATGCCGATAACGTCT
Photorhabdus luminescens subsp. laumondii TTO1	plu0196	-102	3.6	TAACGTATTACTGATAACAAAT

Position: -129 Score: 3.9 Sequence: TATTTTGCGGAGTTTCGCATAA Locus tag: XBJ1_0237
	XBJ1_0237	-129	3.9	TATTTTGCGGAGTTTCGCATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yicG
Ortholog function: Putative inner membrane protein
Escherichia coli str. K-12 substr. MG1655	b3646	-58	4.4	AATCGTGACAATGCGCACAAAT
Salmonella typhimurium LT2	STM3738	-210	3.7	TTAAATTATCTAAGTCAAAATA
		-147	3.8	TTTATTGATATTTATAATAAAT
		-58	4.9	AATCGTGATACAGCGCACAAAT
Citrobacter koseri ATCC BAA-895	CKO_05103	-58	4.7	AATCGTGATATTACGCACAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03994	-55	4.9	AATCGTGATCCTGCGCACAAAT
Enterobacter sp. 638	Ent638_0094	-55	3.9	AATCGTGATATGTTCTGCAAAA
Edwardsiella tarda EIB202	ETAE_0032	-180	3.8	AAAACTAATCTATATCAAATAT

Position: -142 Score: 3.7 Sequence: ATATGTGATTATGTTGACGTCA Locus tag: XBJ1_0246
	XBJ1_0246	-142	3.7	ATATGTGATTATGTTGACGTCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dppA
Ortholog function: dipeptide ABC transporter, substrate-binding protein
Citrobacter koseri ATCC BAA-895	CKO_04994	-121	3.8	TTATGTGAACGGAATCCCCATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03899	-62	4	ATATGCAAACAACATCACAATT
Yersinia pestis KIM	y3825	-211	3.9	AGATGTGAGCCATATAACCTCT
Serratia proteamaculans 568	Spro_0138	-271	3.8	TTGTTTGCTGTTTCTCACAGTC
Photorhabdus luminescens subsp. laumondii TTO1	plu0300	-223	3.7	AAATGTGCGCATTGTCATGTTT

Position: -95 Score: 5 Sequence: TAATTTGAGCCAGTTCACATTT Locus tag: XBJ1_0374
	XBJ1_0374	-95	5	TAATTTGAGCCAGTTCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deaD
Ortholog function: ATP-independent RNA helicase
Salmonella typhimurium LT2	STM3280.S	-154	3.9	CTTTTTGATTGCCATCACCTTC
		-99	4.4	TACTTTGAGCCGGTTCACACTT
Citrobacter koseri ATCC BAA-895	CKO_04559	-103	3.9	CTTTTTGATTGCCATCACCTTC
		-48	4.4	TACTTTGAGCCGGTTCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03570	-154	3.8	TTTTTTGCTTGCCATCACCTTC
		-99	4.4	TACTTTGAGCCGGTTCACACAT
Enterobacter sp. 638	Ent638_3599	-154	4.1	TCTTATGATTGCCATCACCTTA
		-99	4.4	TACTTTGAGCCGGTTCACACTT
Erwinia amylovora ATCC 49946	EAM_3065	-99	4.8	TAATTTGAGCCGGTTCACACTT
Yersinia pestis KIM	y0696	-96	4.8	TAATTTGAGCCGGTTCACACTT
Serratia proteamaculans 568	Spro_0495	-96	4.8	TAATTTGAGCCGGTTCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0718	-96	4.4	CAATTTGAGCCGGTTCACACTT
Edwardsiella tarda EIB202	ETAE_0411	-96	4.8	TAATTTGAGCCGGTTCACACTT
Proteus mirabilis HI4320	PMI3424	-80	5	TAATTTGAGCCAGTTCACATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4523	-95	5	TAATTTGAGCCAGTTCACATTT

Position: -185 Score: 3.9 Sequence: AACTGTGACATACCACAGATAA Locus tag: XBJ1_0541
	XBJ1_0541	-185	3.9	AACTGTGACATACCACAGATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpQ
Ortholog function: glycerophosphoryl diester phosphodiesterase
Escherichia coli str. K-12 substr. MG1655	b2239	-219	3.7	TTGTTTGATTTCGCGCATATTC
		-179	3.6	AAACGTGATTTCATGCGTCATT
		-129	4.6	ATGTGTGCGGCAATTCACATTT
Salmonella typhimurium LT2	STM2282	-220	3.6	ATGTTTGATTTCGCGCATAATC
		-180	4.2	AAACGTGATTTCGTGCGCCTTT
		-131	5.2	ATATGTGCTGTAATTCACATTA
Citrobacter koseri ATCC BAA-895	CKO_00538	-221	3.6	TTGTTTGATTTCGCGCATAATC
		-181	4	AAACGTGATTTCGTGCGCTTTT
		-132	4.8	ATCTGTGCTGTAATTCACATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02645	-218	3.8	TTGTTTGATTTCGAGCATATTC
		-178	4.6	TTATGTGATTTCGTGCTCACAT
		-128	4.5	AATTGTGCGATGTTTCACAGTA
Serratia proteamaculans 568	Spro_0198	-249	4.5	GAATGTGATCATAATCACGATT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4167	-253	3.7	ATGTTTGATAAAGAGCAAAAAC
		-193	4.9	AAGTGTGATTTGCATCACTAAA
Edwardsiella tarda EIB202	ETAE_3117	-200	3.7	ATATGAGCGATCTCTCACAGTA
Proteus mirabilis HI4320	PMI3590	-291	3.6	ATGTTTGATAATGAGCAAAAAC
		-232	5.4	ATATGTGATACTAATCACAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu4120	-250	4.9	TATTGTGACAATTGTCACAATT

Position: -240 Score: 4.8 Sequence: TATTGTGACGTAGGTCACTATA Locus tag: XBJ1_0542
	XBJ1_0542	-240	4.8	TATTGTGACGTAGGTCACTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpT
Ortholog function: glycerol-3-phosphate transporter
Escherichia coli str. K-12 substr. MG1655	b2240	-219	3.7	TTGTTTGATTTCGCGCATATTC
		-179	3.6	AAACGTGATTTCATGCGTCATT
		-129	4.6	ATGTGTGCGGCAATTCACATTT
Salmonella typhimurium LT2	STM2283	-220	3.6	ATGTTTGATTTCGCGCATAATC
		-180	4.2	AAACGTGATTTCGTGCGCCTTT
		-131	5.2	ATATGTGCTGTAATTCACATTA
Citrobacter koseri ATCC BAA-895	CKO_00537	-221	3.6	TTGTTTGATTTCGCGCATAATC
		-181	4	AAACGTGATTTCGTGCGCTTTT
		-132	4.8	ATCTGTGCTGTAATTCACATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02646	-218	3.8	TTGTTTGATTTCGAGCATATTC
		-178	4.6	TTATGTGATTTCGTGCTCACAT
		-128	4.5	AATTGTGCGATGTTTCACAGTA
Enterobacter sp. 638	Ent638_2804	-201	3.6	TTGTTTGATTTCGAACATAATC
		-161	3.8	AAGCGTGATCTCATGCGCTTAT
		-111	4	ATCTGTGCGTTGATTCACAGTA
Erwinia amylovora ATCC 49946	EAM_0195	-240	3.7	AAACGCGATGCGGTTAACGATG
		-147	3.7	ATTTGTGCCTCTCTTCACGGTC
Serratia proteamaculans 568	Spro_0199	-249	4.5	GAATGTGATCATAATCACGATT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4166	-253	3.7	ATGTTTGATAAAGAGCAAAAAC
		-193	4.9	AAGTGTGATTTGCATCACTAAA
Edwardsiella tarda EIB202	ETAE_3116	-200	3.7	ATATGAGCGATCTCTCACAGTA
Proteus mirabilis HI4320	PMI3591	-291	3.6	ATGTTTGATAATGAGCAAAAAC
		-232	5.4	ATATGTGATACTAATCACAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu4119	-250	4.9	TATTGTGACAATTGTCACAATT

Position: -204 Score: 4 Sequence: TTTTGTGCCACGAGTCACAGTG Locus tag: XBJ1_0778
	XBJ1_0778	-204	4	TTTTGTGCCACGAGTCACAGTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompA
Ortholog function: outer membrane protein A
Escherichia coli str. K-12 substr. MG1655	b0957	-188	4	ATGCCTGACGGAGTTCACACTT
Salmonella typhimurium LT2	STM1070	-188	4.3	ATGTCTGACGGAGTTCACACTT
Citrobacter koseri ATCC BAA-895	CKO_02111	-164	4	ATGCCTGACGGAGTTCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00986	-185	3.9	ATGCCTGACAGAGTTCACACTT
Enterobacter sp. 638	Ent638_1469	-189	4	ATGCCTGACGGAGTTCACACTT
Serratia proteamaculans 568	Spro_1754	-195	3.8	TTTTTAGAGCTTTATCACATCA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1751	-200	3.9	TCTTATGACACAAATCACATCA
Edwardsiella tarda EIB202	ETAE_1267	-196	3.7	TTTGGTGAGCATAATCACATCG

Position: -82 Score: 4.1 Sequence: TATTGTGTAGTGTGTCTCATTT Locus tag: XBJ1_0800
	XBJ1_0800	-82	4.1	TATTGTGTAGTGTGTCTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aphA
Ortholog function: acid phosphatase/phosphotransferase
Escherichia coli str. K-12 substr. MG1655	b4055	-130	3.6	CATCCTGCTTTTCATCACAAAA
		-57	4	TTTTGCAACAAATCTCACAATA
Salmonella typhimurium LT2	STM4249	-139	3.7	TGTTGTGATCATCCTCTTTTTT
Citrobacter koseri ATCC BAA-895	CKO_03845	-255	3.9	TATTGTGAATGCGTGTACAGAA
		-224	3.7	GTGTGTGTGGTTTATCACACAT
Enterobacter sp. 638	Ent638_0259	-57	3.8	TTTTTTGACCATTCGCTCAATT
Edwardsiella tarda EIB202	ETAE_3469	-150	5	TTTTGTGATGAATGTCACGTAT
		-98	3.7	AACATAGATCATGATCACATTA
Proteus mirabilis HI4320	PMI0729	-148	4.3	AAGTGTTAGATAGATCAAAAAA
		-87	4.3	TAACGTGCGCTATATCTCATTT
		-34	4.3	TTCTGTGATTAATATAAAAATT

Position: -289 Score: 3.4 Sequence: TACTGAGAGTTATTTTAAAATT Position: -279 Score: 3.2 Sequence: TATTTTAAAATTCCTTATATTT Locus tag: XBJ1_0817
	XBJ1_0817	-289	3.4	TACTGAGAGTTATTTTAAAATT
		-279	3.2	TATTTTAAAATTCCTTATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: serC
Ortholog function: Phosphoserine aminotransferase (EC 2.6.1.52)
Escherichia coli str. K-12 substr. MG1655	b0907	-155	4.8	TTGTGTGATGCAAGCCACATTT
Salmonella typhimurium LT2	STM0977	-142	4.2	TTGTGTGACGCATGCCGCATTT
Citrobacter koseri ATCC BAA-895	CKO_02165	-171	4.6	TTGTGTGACGTAGCGCGCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00935	-145	3.7	TTGTGTGACGGCGGCCGCGTTT
Enterobacter sp. 638	Ent638_1427	-119	4.4	TTGTGTGACGGTGGACACATTT
Yersinia pestis KIM	y2784	-39	3.3	TATAACGATGGCAATCTCAGTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2594	-78	3.5	AAGTATGACGGGTATAAAAATG
Proteus mirabilis HI4320	PMI0711	-119	3.5	TATTTTTGTGTGCTACACATAA

Position: -187 Score: 4 Sequence: TATTGTTATAAATTTTAAAAAA Position: -88 Score: 4.9 Sequence: TAATATGATCCATATCAAATTT Locus tag: XBJ1_0820
	XBJ1_0820	-187	4	TATTGTTATAAATTTTAAAAAA
		-88	4.9	TAATATGATCCATATCAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: focA
Ortholog function: formate transporter
Escherichia coli str. K-12 substr. MG1655	b0904	-156	3.6	TATTTTTATTTGGATAATCAAA
		-78	3.8	AGATATGATCTATATCAATTTC
Salmonella typhimurium LT2	STM0974	-78	4.4	AGATATGATCTATATCAAATTC
Citrobacter koseri ATCC BAA-895	CKO_02167	-198	3.6	TATTTTTATTTGGATAATCAAA
		-120	4.4	AGATATGATCTATATCAAATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00932	-121	3.8	AGATATGATCTATATCAATTTC
Enterobacter sp. 638	Ent638_1424	-78	3.8	AGATATGATCTATATCAATTTC
Yersinia pestis KIM	y2789	-84	4	CAATATGATCCATATCAATTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2596	-79	4.5	CAATATGATCCACATCAAATTT
Proteus mirabilis HI4320	PMI0706	-188	4	TTTTTTGATAAAATTTAAAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1614	-88	4.7	AATTATGATCTATATCAAATTC

Position: -127 Score: 4.7 Sequence: TGATGTTACATGGATCACAATT Locus tag: XBJ1_0866
	XBJ1_0866	-127	4.7	TGATGTTACATGGATCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hpaG
Ortholog function: 4-hydroxyphenylacetate catabolism
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04789	-125	4.4	TTGTGTTAATCCGATCACAAAA
Serratia proteamaculans 568	Spro_0625	-123	5	TTTTGTTATCACGATCACAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu0990	-159	3.7	AATAATGATAAAAAACAAATTT
		-129	4.9	TATTGTTACTGAGATCACAATT

Position: -163 Score: 4.3 Sequence: AAGTTTGATATAGATAACGATA Position: -58 Score: 3.6 Sequence: TAGAATGAATTAGTTCATACTA Position: 0 Score: 3.9 Sequence: ATGAGTGAGTTTTATAACAGTT Locus tag: XBJ1_0899
	XBJ1_0899	-163	4.3	AAGTTTGATATAGATAACGATA
		-58	3.6	TAGAATGAATTAGTTCATACTA
		0	3.9	ATGAGTGAGTTTTATAACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: clpS
Ortholog function: ATP-dependent Clp protease adaptor protein
Escherichia coli str. K-12 substr. MG1655	b0881	-164	4	AAATTTGAAGCAGTTAACGCTA
Salmonella typhimurium LT2	STM0944	-164	4	AAATTTGAAGCAGTTAACGCTA
		-104	3.6	AGATGTTAGTTATCTATCAATT
Citrobacter koseri ATCC BAA-895	CKO_02199	-164	4	AAATTTGAAGCAGTTAACGCTA
		-135	4.2	TAATGTGACAGATGTCGCGGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00914	-167	4	AAATTTGAAGCAGTTAACGCTA
		-77	4.3	ATTTGTGATGAGCATAACCTCT
Enterobacter sp. 638	Ent638_1398	-161	3.9	ATTTTTGAAGCAGTTAACGCTA
		-132	3.8	GAATGTGACAGATATCGCGGAT
Erwinia amylovora ATCC 49946	EAM_1320	-161	4	AAATTTGAAGCAGTTAACGCTA
		-132	4.5	TTTTGTGATAGAGGTCGCTATT
Serratia proteamaculans 568	Spro_1673	-176	3.6	AAGTTTGAAGCAGGTAACGCTA
Edwardsiella tarda EIB202	ETAE_2208	-164	3.8	AAGTTTGAGGCAGTTAACGCAA
		-144	3.6	AATTGTGCGGCAGTGCGCTTTT
Proteus mirabilis HI4320	PMI0689	-268	3.7	TGTCTTTATTTACTTAACATTA
		-148	4.1	AACTTTGATGTAGCTAACGCTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1593	-170	4.3	AAGTTTGATATAGATAACGATA

Position: -182 Score: 4.6 Sequence: TATCGTTATCTATATCAAACTT Position: 11 Score: 4 Sequence: TACTGTGAAATGGTTCAATAAT Locus tag: XBJ1_0900
	XBJ1_0900	-182	4.6	TATCGTTATCTATATCAAACTT
		11	4	TACTGTGAAATGGTTCAATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cspD
Ortholog function: cold shock-like protein
Escherichia coli str. K-12 substr. MG1655	b0880	-180	4	TAGCGTTAACTGCTTCAAATTT
Salmonella typhimurium LT2	STM0943	-181	4	TAGCGTTAACTGCTTCAAATTT
Citrobacter koseri ATCC BAA-895	CKO_02200	-210	3.9	ATCCGCGACATCTGTCACATTA
		-181	4	TAGCGTTAACTGCTTCAAATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00913	-270	4.2	AGAGGTTATGCTCATCACAAAT
		-180	4	TAGCGTTAACTGCTTCAAATTT
Enterobacter sp. 638	Ent638_1397	-209	3.8	ATCCGCGATATCTGTCACATTC
		-180	3.9	TAGCGTTAACTGCTTCAAAAAT
Serratia proteamaculans 568	Spro_1672	-205	4	TAGCGTTACCTGCTTCAAACTT
		-49	3.9	TTCAGTTATTCATCTCACCTAA
Proteus mirabilis HI4320	PMI0688	-163	3.8	AAGCGTTAGCTACATCAAAGTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1592	-194	4.6	TATCGTTATCTATATCAAACTT

Position: -302 Score: 4 Sequence: AATTGCGAGAGTGATCACGGTA Position: -230 Score: 3.7 Sequence: TTTTTTGATTTCAACATCAAAA Locus tag: XBJ1_0911
	XBJ1_0911	-302	4	AATTGCGAGAGTGATCACGGTA
		-230	3.7	TTTTTTGATTTCAACATCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdaC
Ortholog function: Serine transporter
Escherichia coli str. K-12 substr. MG1655	b2796	-179	4.2	ATTTGAGATCAAGATCACTGAT
Salmonella typhimurium LT2	STM2970	-176	4.2	ATTTGAGATCGGGATCACTGAT
Citrobacter koseri ATCC BAA-895	CKO_04152	-176	4.1	ATTTGGGATCGCGATCACTGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03139	-158	4.2	ATTTGAGATCGCGATCACTGAT
Enterobacter sp. 638	Ent638_3249	-176	4.1	ATTTGGGATCAGGATCACTGAT
Erwinia amylovora ATCC 49946	EAM_1294	-300	3.6	ATTTGTTAAAAATCGCAAAAAA
		-180	3.9	AAATGTGATTCCGATCACCGGC
Yersinia pestis KIM	y2862	-286	4.3	AATTGAGATCACGATCACGGTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3158	-195	3.7	TTCTGTGATCGCCTCAATATTA
Proteus mirabilis HI4320	PMI0672	-283	4.3	ATTTGAGATGGTGATCACGGTA

Position: -121 Score: 4.7 Sequence: ACATGTGATCTCATTAACAAAT Position: -89 Score: 3.9 Sequence: AATTTTGTTGTATATGACATTA Locus tag: XBJ1_0927
	XBJ1_0927	-121	4.7	ACATGTGATCTCATTAACAAAT
		-89	3.9	AATTTTGTTGTATATGACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gnd
Ortholog function: hypothetical protein
Enterobacter sp. 638	Ent638_2642	-116	4	CAGTGTGACATAGATCAGCAAA
Yersinia pestis KIM	y2629	-78	3.8	AGTTGTGCTATCTATCGCACCA
		-76	3.6	TTGTGCTATCTATCGCACCAAT
Serratia proteamaculans 568	Spro_1608	-297	3.7	ATGCTTGAAGTGGCTCTCACTT
		-72	4.2	ACATGTGTGCCACATCACAAAA
Proteus mirabilis HI4320	PMI0655	-71	4.7	CTATGTGATCAGGTTAACAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu1560	-74	4.4	ACATGTGATCACATTAACAAAT

Position: -227 Score: 4 Sequence: TAATGTCATATACAACAAAATT Position: -195 Score: 4 Sequence: ATTTGTTAATGAGATCACATGT Locus tag: XBJ1_0928
	XBJ1_0928	-227	4	TAATGTCATATACAACAAAATT
		-195	4	ATTTGTTAATGAGATCACATGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yegH
Ortholog function: putative membrane protein
Escherichia coli str. K-12 substr. MG1655	b2063	-43	4.6	AATTGTGACATTTGTCATACAA
Salmonella typhimurium LT2	STM2119	-42	4.5	AATTGTGACAATTGTCATATTA
Citrobacter koseri ATCC BAA-895	CKO_00719	-42	4.5	AATTGTGACAACTGTCATATAA
Enterobacter sp. 638	Ent638_2677	-42	4.4	AAGTGTGACAAATGTCATATAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1559	-193	3.9	ATTTGTTAATGTGATCACATGT

Position: -72 Score: 5.2 Sequence: TAATGTGATGTATGGCACATTT Locus tag: XBJ1_0936
	XBJ1_0936	-72	5.2	TAATGTGATGTATGGCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yohJ
Ortholog function: LrgA family protein
Escherichia coli str. K-12 substr. MG1655	b2141	-68	4.9	TAATGTGATCGGTAGCACGTTT
Salmonella typhimurium LT2	STM2181	-68	4.6	TGATGTGATCGGTAGCACGTTT
Citrobacter koseri ATCC BAA-895	CKO_00648	-68	4.6	TGATGTGATCGGTAGCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02582	-68	5	TGATGTGATCGGTAGCACATTT
Enterobacter sp. 638	Ent638_2744	-68	4.7	TGATGTGATCCGTAGCACGTTT
Yersinia pestis KIM	y2654	-32	4.7	TAGTGTGATGGGTAGCACAGAA
Serratia proteamaculans 568	Spro_1570	-62	4.3	ATTTGTGGCGGAGGTCACAGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2828	-69	4.5	ATTCGTGATCTGTGGCACGTAA
Edwardsiella tarda EIB202	ETAE_1164	-68	4.9	TGATGTGATCAGTAGCACATTT
Proteus mirabilis HI4320	PMI0645	-71	5.2	TATTGTGATCCATAGCACACTT

Position: -127 Score: 4.4 Sequence: AAATTTGATATAAGTCACTAAA Locus tag: XBJ1_0939
	XBJ1_0939	-127	4.4	AAATTTGATATAAGTCACTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cdd
Ortholog function: cytidine deaminase
Escherichia coli str. K-12 substr. MG1655	b2143	-128	4.3	ATTTGCGATGCGTCGCGCATTT
		-78	5.1	TAATGAGATTCAGATCACATAT
Salmonella typhimurium LT2	STM2183	-128	4.2	ATTTGCGATACGTCGCGCATTT
		-78	4.8	CAATGAGATTTAGATCACATAT
Citrobacter koseri ATCC BAA-895	CKO_00646	-128	4.3	ATTTGCGATGCGTCGCGCATTT
		-78	4.8	CAATGAGATTTGGATCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02584	-78	4.4	GAATGAGATATTCATCACATAT
Enterobacter sp. 638	Ent638_2746	-127	4.2	ATTTGCGATGCGTCGCGCAATT
		-77	4.9	TAATGAGAACTGGATCACATAT
Erwinia amylovora ATCC 49946	EAM_2202	-124	3.9	ACTTGCGATAAGTCTCTCATTT
		-104	4.1	TTTGGTGATGCATTTCATTTAT
		-74	4.7	TAGAGCGATTTAGATCACATAT
Yersinia pestis KIM	y2657	-75	5	TAATGAGATATAAATCACAATT
Serratia proteamaculans 568	Spro_1568	-127	4.1	ACTTGCGATACATCTCGCAATT
		-77	4.5	TAAAGAGATTTACATCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2830	-130	4.6	AATTGAGATACATCTCGCATTT
		-79	4.5	TAAAGAGATTCCGATCACAATT
Edwardsiella tarda EIB202	ETAE_1162	-76	4.9	AAAAGTGATTATTATCACAAAT
Proteus mirabilis HI4320	PMI0643	-132	4.4	ATTTGAGATGTATCTCCCAATT
		-82	5.1	AAATATGATTTTAATCACATAT
Photorhabdus luminescens subsp. laumondii TTO1	plu1547	-75	4.7	CTATATGATATTTATCACATTA

Position: 26 Score: 3.5 Sequence: TAGTGTGCGTGGTTTCGCTATT Locus tag: XBJ1_0943
	XBJ1_0943	26	3.5	TAGTGTGCGTGGTTTCGCTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yeiB
Ortholog function: conserved inner membrane protein
Escherichia coli str. K-12 substr. MG1655	b2152	-101	3.8	TTATGTGCGCCGCCTCACGCAC
Salmonella typhimurium LT2	STM2192	-101	4	TTATGTGCGCTACCTCACGCAC
Citrobacter koseri ATCC BAA-895	CKO_00639	-98	3.8	TTATGTGCGCCGCCTCACGCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02590	-84	3.5	TTCTGTGCGCCACCTCACGCAC
Enterobacter sp. 638	Ent638_2752	-84	3.9	TTATGTGCGCCACCTCACGCAC
Serratia proteamaculans 568	Spro_1561	-121	4.3	AATCTTGACCGGGTTCACGTTA
Proteus mirabilis HI4320	PMI0640	-86	4.9	TAATGTGATTCAGCTCATCTAA

Position: -23 Score: 3.8 Sequence: CTTTGTAACAGGATACACATAA Locus tag: XBJ1_0970
	XBJ1_0970	-23	3.8	CTTTGTAACAGGATACACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybiH
Ortholog function: putative transcriptional regulator
Escherichia coli str. K-12 substr. MG1655	b0796	-123	4.5	TTTTGTGACGCAGCGCATAAAT
Salmonella typhimurium LT2	STM0819	-124	4.7	TTTTGTGATGCGGCGCATAAAT
Citrobacter koseri ATCC BAA-895	CKO_02331	-124	4.5	TTTTGTGACATACCGCATAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00824	-224	3.6	AAATGAAACGGTATTCAAAAAA
		-118	4.7	AATTGTTAAGCCCATCACAAAT
Enterobacter sp. 638	Ent638_1287	-126	4.4	TTTTGTGACACGGCGCATAAAA
Serratia proteamaculans 568	Spro_1330	-146	4.6	TTAAGTGACGCAGAGCACAATA
Proteus mirabilis HI4320	PMI0619	-160	3.6	AATTTTTAAATAAATCATGTTT

Position: -127 Score: 4 Sequence: ATATCTGATTTACTTAATAATT Locus tag: XBJ1_1053
	XBJ1_1053	-127	4	ATATCTGATTTACTTAATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydA
Ortholog function: cytochrome d terminal oxidase, polypeptide subunit I
Proteus mirabilis HI4320	PMI0573	-247	3.8	AAATATGCTGTTACTAACCTAA

Position: -303 Score: 3.9 Sequence: ATGTTTAATCCTTGTCAAATAA Position: -254 Score: 4.3 Sequence: AAGCGTGATCTTTCTCACTGTT Locus tag: XBJ1_1061
	XBJ1_1061	-303	3.9	ATGTTTAATCCTTGTCAAATAA
		-254	4.3	AAGCGTGATCTTTCTCACTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Enterobacter sp. 638	Ent638_1222	-295	4.2	TATCGTGACTGTGATCACTGTT
Erwinia amylovora ATCC 49946	EAM_1168	-249	4.4	AAGTGTGATTTTTGTCACTGTT
		-190	3.6	TAATGAGATTGTGATCCACTTA
Yersinia pestis KIM	y3071	-254	4.5	AATCGTGATCCTAATCACTGTT
Serratia proteamaculans 568	Spro_1263	-253	4.3	ATCCGTGATCTAAATCACTGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1357	-265	4.7	ATTCGTGATCTAAATCACTGTT
Edwardsiella tarda EIB202	ETAE_2588	-261	3.7	ATGCGTGACCGTTGTCACTGTT
Proteus mirabilis HI4320	PMI0565	-264	4.3	AAAAGTGATCCCTCTCACTGTT

Position: -265 Score: 3.7 Sequence: AATTGTTATTTGAGCAAAATTT Locus tag: XBJ1_1343
	XBJ1_1343	-265	3.7	AATTGTTATTTGAGCAAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: prpR
Ortholog function: Propionate catabolism operon regulatory protein PrpR
Escherichia coli str. K-12 substr. MG1655	b0330	-107	3.7	ATATGCGTTTCAGTTAACGTTT
Salmonella typhimurium LT2	STM0367	-89	3.5	TTTCATGAAACGAATCACCCTG
Citrobacter koseri ATCC BAA-895	CKO_02831	-179	3.4	AATTTTGTTTTTTCTTATAATT
Photorhabdus luminescens subsp. laumondii TTO1	plu3543	-225	4	ATATATGATTGTTTTTAAATTA

Position: -204 Score: 4 Sequence: TGATGTAATCTTTATTAAATTA Locus tag: XBJ1_1455
	XBJ1_1455	-204	4	TGATGTAATCTTTATTAAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuA
Ortholog function: anaerobic C-4-dicarboxylate symporter
Salmonella typhimurium LT2	STM4325	-209	4.2	AGCGGTGACCTATTTCACAAAA
		-159	4.2	TTAAGTGATCCAGATTACGGTA
Citrobacter koseri ATCC BAA-895	CKO_03697	-54	4.2	AGCGGTGACCTATTTCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04528	-204	3.9	AGCGGTGACCCATTTCACAGAT
		-154	3.8	ATAAGTGATCAAGCTTACTGAT
Enterobacter sp. 638	Ent638_0325	-205	4.1	AGCGGTGATTCATTTCACAGAT
Erwinia amylovora ATCC 49946	EAM_0415	-228	4.2	CAATGTGACCTGGAACAGATAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0620	-272	4	ACTCGTGACTACAATCACAGTT

Position: -131 Score: 4.4 Sequence: TTATGGGATAAGTATCAAATTA Locus tag: XBJ1_1600
	XBJ1_1600	-131	4.4	TTATGGGATAAGTATCAAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fsr
Ortholog function: fosmidomycin resistance protein
Escherichia coli str. K-12 substr. MG1655	b0479	-65	3.7	TAGTCTGGTAATAATCACAAAT
Salmonella typhimurium LT2	STM0493	-100	3.8	AATTGAGACTTCCTTCAAACAC
Citrobacter koseri ATCC BAA-895	CKO_02670	-102	3.8	AATTGAGACTTCCTTCAAACAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00460	-197	3.8	AATTGCGACTTCCTTCAAACCT
Enterobacter sp. 638	Ent638_0958	-92	4	AATTGCGACTTTCCTCAAATCT
Serratia proteamaculans 568	Spro_1146	-100	4.7	TTTTGCGATGTGCGTCAAATTA

Position: -220 Score: 3.8 Sequence: AATAGTGAGTTAACTCAAGAAG Position: -23 Score: 3.5 Sequence: ATTTGTTACGATAGTAAAACTA Locus tag: XBJ1_1634
	XBJ1_1634	-220	3.8	AATAGTGAGTTAACTCAAGAAG
		-23	3.5	ATTTGTTACGATAGTAAAACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hupB
Ortholog function: HU, DNA-binding transcriptional regulator, beta subunit
Proteus mirabilis HI4320	PMI0118	-216	4.9	AATCGTGATGTGAATCATAATA
Photorhabdus luminescens subsp. laumondii TTO1	plu3866	-222	3.5	AATAGTGAATTTTTTCAATAAG

Position: -214 Score: 4.6 Sequence: ACATGTGATCCCTCTAACATAA Locus tag: XBJ1_1646
	XBJ1_1646	-214	4.6	ACATGTGATCCCTCTAACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoA
Ortholog function: cytochrome o ubiquinol oxidase subunit II
Yersinia pestis KIM	y1021	-137	4.5	ATCTGTGACCCCCTTAACATAA
Serratia proteamaculans 568	Spro_1090	-135	4.2	ATCTGTGACCCCCTTAACAGAA
Proteus mirabilis HI4320	PMI0108	-194	3.6	AAATTATAGTTAATTCACAATA
		-147	3.6	TTAATTACTTGTGATCACATTA
		-141	4.3	ACTTGTGATCACATTAACACAA

Position: -54 Score: 3.7 Sequence: TGTCATGACTGTCATAACATTA Locus tag: XBJ1_1731
	XBJ1_1731	-54	3.7	TGTCATGACTGTCATAACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nhaA
Ortholog function: Na+/H+ antiporter NhaA type
Salmonella typhimurium LT2	STM0039	-97	3.7	AAACGAGCTATTCATCATATAT
Yersinia pestis KIM	y3704	-147	4.1	AAATGTGATATGCGTTATCAAT
Serratia proteamaculans 568	Spro_0694	-120	4.7	AAGTGTGATATAAATCGCTTAT
Proteus mirabilis HI4320	PMI0011	-110	3.9	ATAAGCGATTGAGATCGAAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu0587	-122	4.4	TATTGAGATGTAGATCATCAAT

Position: -82 Score: 3.3 Sequence: TATTTTTATCTGTTTTAAAGTC Locus tag: XBJ1_1744
	XBJ1_1744	-82	3.3	TATTTTTATCTGTTTTAAAGTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: proP
Ortholog function: L-Proline/Glycine betaine transporter ProP
Citrobacter koseri ATCC BAA-895	CKO_03376	-115	3.7	TTCTGTGACATAAATTACGCAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00010	-105	3.2	TGATATAACCTGCATCGCTAAT

Position: -86 Score: 3.4 Sequence: AATTTTTAAGTGGATTACTATA Locus tag: XBJ1_1757
	XBJ1_1757	-86	3.4	AATTTTTAAGTGGATTACTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroA
Ortholog function: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Escherichia coli str. K-12 substr. MG1655	b0908	-155	4.8	TTGTGTGATGCAAGCCACATTT
Salmonella typhimurium LT2	STM0978	-142	4.2	TTGTGTGACGCATGCCGCATTT
Citrobacter koseri ATCC BAA-895	CKO_02164	-171	4.6	TTGTGTGACGTAGCGCGCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00936	-145	3.7	TTGTGTGACGGCGGCCGCGTTT
Enterobacter sp. 638	Ent638_1428	-119	4.4	TTGTGTGACGGTGGACACATTT
Yersinia pestis KIM	y2783	-39	3.3	TATAACGATGGCAATCTCAGTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2593	-78	3.5	AAGTATGACGGGTATAAAAATG
Edwardsiella tarda EIB202	ETAE_2177	-104	3.8	TATAGTGACAGCGCTCAATAAA

Position: -226 Score: 3.3 Sequence: ATTTGTGACTGTATAGTCATAA Position: -51 Score: 3.2 Sequence: ATCCGTGATTATATAAATATTT Position: -4 Score: 3.2 Sequence: AAATATGAGCAAGGTTACTGTT Locus tag: XBJ1_1759
	XBJ1_1759	-226	3.3	ATTTGTGACTGTATAGTCATAA
		-51	3.2	ATCCGTGATTATATAAATATTT
		-4	3.2	AAATATGAGCAAGGTTACTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroA
Ortholog function: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Escherichia coli str. K-12 substr. MG1655	b0908	-155	4.8	TTGTGTGATGCAAGCCACATTT
Salmonella typhimurium LT2	STM0978	-142	4.2	TTGTGTGACGCATGCCGCATTT
Citrobacter koseri ATCC BAA-895	CKO_02164	-171	4.6	TTGTGTGACGTAGCGCGCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00936	-145	3.7	TTGTGTGACGGCGGCCGCGTTT
Enterobacter sp. 638	Ent638_1428	-119	4.4	TTGTGTGACGGTGGACACATTT
Yersinia pestis KIM	y2783	-39	3.3	TATAACGATGGCAATCTCAGTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2593	-78	3.5	AAGTATGACGGGTATAAAAATG
Edwardsiella tarda EIB202	ETAE_2177	-104	3.8	TATAGTGACAGCGCTCAATAAA

Position: -341 Score: 5.2 Sequence: TTTTGTGATGCATGTCACATAG Locus tag: XBJ1_1917
	XBJ1_1917	-341	5.2	TTTTGTGATGCATGTCACATAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: flhD
Ortholog function: DNA-binding transcriptional dual regulator with FlhC
Proteus mirabilis HI4320	PMI1672	-158	3.6	TGAAATGATCGTAATCAAGTAA

Position: -298 Score: 4 Sequence: AAATGTGACTTAGCGAGCGTTT Locus tag: XBJ1_1999
	XBJ1_1999	-298	4	AAATGTGACTTAGCGAGCGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: putP
Ortholog function: Proline/sodium symporter PutP (TC 2.A.21.2.1)
Escherichia coli str. K-12 substr. MG1655	b1015	-207	3.6	AAATGTGAGAGAGTGCAACCTG
Salmonella typhimurium LT2	STM1125	-204	3.6	AAATGTGAGAGAGTGCAACCTG
Citrobacter koseri ATCC BAA-895	CKO_02041	-80	3.6	AAATGTGAGAGAGTGCAACCTG
Enterobacter sp. 638	Ent638_1542	-249	3.7	TTTTATGCGGCACTTAACACTT
Serratia proteamaculans 568	Spro_2930	-211	3.9	AAATGTGACGCAGGGTAAACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4218	-130	3.7	TTGTGCAACCTTGTTAACAAAT
Proteus mirabilis HI4320	PMI1615	-220	3.8	TAGTGTGAAGTTACATACAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1958	-243	4.4	AAATGTGATTCAGTAAACGTTT

Position: -129 Score: 3.9 Sequence: ACTTGTGATCGCCGCCGCAATA Locus tag: XBJ1_2196
	XBJ1_2196	-129	3.9	ACTTGTGATCGCCGCCGCAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ychH
Ortholog function: membrane protein
Escherichia coli str. K-12 substr. MG1655	b1205	-105	4.5	AATTGTGATCACGCCCGCACAT
Salmonella typhimurium LT2	STM1782	-105	4.4	ATTTGTGATCGCACCCGCACTT
Citrobacter koseri ATCC BAA-895	CKO_01260	-104	4.1	AATTGTGATCGCCCACGCACTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02241	-100	4.1	TAATGTGATCGTGGACGCACTC
Enterobacter sp. 638	Ent638_2343	-119	3.7	TGTTGTGACGAGAGTCATTAAT
		-101	4	TAATGTGATCATTCACGCAACT
Erwinia amylovora ATCC 49946	EAM_1581	-97	3.9	AAATGTGATCGCTGACTCATCA
Yersinia pestis KIM	y2296	-145	3.9	AGTTGTGATCGCTACCGCAACA
Serratia proteamaculans 568	Spro_1985	-117	4.2	ATTTGTGATCGCCTACGCAATC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2185	-275	3.6	TAGCGTGATTATGAGAACGCTA
		-117	3.8	ATCTGTGATCCCTCCCGCAATC
Photorhabdus luminescens subsp. laumondii TTO1	plu2065	-189	4.1	AGTTGTGATCGTGTCCGCAATG

Position: -153 Score: 3.6 Sequence: AAATTAGACACTTGTCATATTT Locus tag: XBJ1_2232
	XBJ1_2232	-153	3.6	AAATTAGACACTTGTCATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hexR
Ortholog function: Phosphogluconate repressor HexR, RpiR family
Escherichia coli str. K-12 substr. MG1655	b1853	-151	3.9	AAATCTGACACTGATCATGTTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02368	-134	3.6	AAATACGACCCTGATCATGTAA
Yersinia pestis KIM	y2245	-152	3.7	AAATTAGACACAGGTCATATTA
Proteus mirabilis HI4320	PMI1156	-58	3.6	AACCGTTATAGATTTCTCCTTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2121	-132	3.7	TTTTATGAAAAACATTAAATTA

Position: -263 Score: 3.7 Sequence: AAATATGACAAGTGTCTAATTT Locus tag: XBJ1_2233
	XBJ1_2233	-263	3.7	AAATATGACAAGTGTCTAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: zwf
Ortholog function: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Escherichia coli str. K-12 substr. MG1655	b1852	-208	3.9	TAACATGATCAGTGTCAGATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02367	-225	3.8	TTACATGATCAGGGTCGTATTT
Yersinia pestis KIM	y2244	-231	4.1	TAATATGACCTGTGTCTAATTT
Proteus mirabilis HI4320	PMI1157	-225	3.7	AAGTATGACCTGTGTCTAACTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2122	-234	4.2	TAATTTAATGTTTTTCATAAAA

Position: -109 Score: 3.5 Sequence: GTTCGTGTGAACGATCACATTT Locus tag: XBJ1_2321
	XBJ1_2321	-109	3.5	GTTCGTGTGAACGATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mlc
Ortholog function: ROK family transcriptional regulatory protein
Escherichia coli str. K-12 substr. MG1655	b1594	-108	4.1	AAATGTGCTGTTAATCACATGC
Salmonella typhimurium LT2	STM1488	-65	3.8	AGTATTGAAGTGTTTCACCATA
Citrobacter koseri ATCC BAA-895	CKO_01593	-107	3.6	AAaTGTGcagTAaATCACAcgg
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01574	-104	3.8	AAATGTGCGGTAAATCACAAGG
Enterobacter sp. 638	Ent638_1919	-107	3.8	AAATGTGCGGTAAATCACAAGG
Erwinia amylovora ATCC 49946	EAM_1710	-143	4.9	TTATGTGCTGTAAATCACATTC
Yersinia pestis KIM	y2110	-146	4.8	TTATGTGCAGCAAATCACATAA
Serratia proteamaculans 568	Spro_2283	-111	4.8	ATTTGTGCAGCAAATCACATAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2258	-226	4.4	ATATGCGCGCTAAATCACATAA
Edwardsiella tarda EIB202	ETAE_1713	-113	4.8	ATTTGTGCACTTAATCACATAA
Proteus mirabilis HI4320	PMI1292	-126	4.7	ATATGTGCTTTCCATCACGATT
Photorhabdus luminescens subsp. laumondii TTO1	plu2226	-119	4.8	TTTCGTGCTGAATATCACATAT

Position: -236 Score: 4.8 Sequence: TTTAGTGATTTAGATCACTAAA Locus tag: XBJ1_2430
	XBJ1_2430	-236	4.8	TTTAGTGATTTAGATCACTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Escherichia coli str. K-12 substr. MG1655	b1241	-241	5	AAATTTGATTTGGATCACGTAA
Salmonella typhimurium LT2	STM1749	-242	4.9	AATCTTGATTTAGATCACACAA
Citrobacter koseri ATCC BAA-895	CKO_01318	-242	4.9	AAATTTGATCTGGATCACGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02199	-237	4.7	ATACTTGATCTAAATCACGTAA
Enterobacter sp. 638	Ent638_2304	-253	4.1	TAAATTGATTCAGATCATGTTT
Erwinia amylovora ATCC 49946	EAM_1900	-223	3.9	ATTGATGATCTGCATCATCTTT
Yersinia pestis KIM	y2023	-286	5.3	TTTTGTGATTTAAATCACGAAA
Serratia proteamaculans 568	Spro_2704	-278	5.1	TTTTATGATTTAAATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2326	-315	4.5	AAGTTCGATGTTGATCACAAAA
Edwardsiella tarda EIB202	ETAE_1508	-265	5	TTTCGTGACCTTAATCACAAAA
Proteus mirabilis HI4320	PMI1486	-246	5.4	TATTGTGATGTAGATCACTTTA
		-187	3.7	AAAGGAGATCTTTTTAAAATAT
Photorhabdus luminescens subsp. laumondii TTO1	plu2496	-237	3.7	TATTTTTATTAGATTAAAAATT
		-138	4.6	TTATGTGATTAAGATCAATATA

Position: -161 Score: 4.6 Sequence: AAATGTGATGATCATCATGAAA Locus tag: XBJ1_2431
	XBJ1_2431	-161	4.6	AAATGTGATGATCATCATGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tdk
Ortholog function: Thymidine kinase (EC 2.7.1.21)
Yersinia pestis KIM	y2145	-208	4.9	TATTGTGAGATTGCTCATATAA
Serratia proteamaculans 568	Spro_2705	-203	4.3	AAATGTGATGTCAGACAGAAAT
Edwardsiella tarda EIB202	ETAE_1506	-206	4	AACTGTTAGGTCGATCACTTAT
Photorhabdus luminescens subsp. laumondii TTO1	plu2497	-157	4.1	TGGTGTGATGGTGGTCATGAAT

Position: -138 Score: 5.1 Sequence: ATATGTGAGACTTATCACAATT Locus tag: XBJ1_2451
	XBJ1_2451	-138	5.1	ATATGTGAGACTTATCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: msrB
Ortholog function: methionine sulfoxide reductase B
Escherichia coli str. K-12 substr. MG1655	b1778	-137	5.2	AAATGTGATTTTCATCACGATT
Salmonella typhimurium LT2	STM1291	-107	4.7	TAATGTGACATCAGTCACGATT
Citrobacter koseri ATCC BAA-895	CKO_01799	-107	4.9	AAACGTGATTCCGATCACGATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01198	-135	5.1	AAACGTGATTTAAGTCACAATT
Enterobacter sp. 638	Ent638_1676	-137	5.2	ATATGTGAGAAAGATCACAATT
Erwinia amylovora ATCC 49946	EAM_1930	-137	5.2	AATGGTGATCTGCATCACAATT
Yersinia pestis KIM	y2164	-85	5.1	ATTTGCGATTTTTATCACATTT
Serratia proteamaculans 568	Spro_2727	-143	5.7	ATATGTGATCGGTATCACATAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2343	-135	5.6	TTATGTGATACACATCACAATT
Edwardsiella tarda EIB202	ETAE_1484	-91	4.9	GTTTGTGATGCTCATCACAAAA
Proteus mirabilis HI4320	PMI1503	-137	5.3	TTATGTGAAATGTATCACATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2557	-267	4.6	ATATGCGAGTCACATCACAATA

Position: -224 Score: 5.4 Sequence: AATTGTGATAAGTCTCACATAT Locus tag: XBJ1_2452
	XBJ1_2452	-224	5.4	AATTGTGATAAGTCTCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gapA
Ortholog function: glyceraldehyde-3-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655	b1779	-226	5.3	AATCGTGATGAAAATCACATTT
Salmonella typhimurium LT2	STM1290	-226	4.8	AATCGTGACTGATGTCACATTA
Citrobacter koseri ATCC BAA-895	CKO_01800	-226	5	AATCGTGATCGGAATCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01197	-225	5.2	AATTGTGACTTAAATCACGTTT
Enterobacter sp. 638	Ent638_1675	-225	5.7	AATTGTGATCTTTCTCACATAT
Erwinia amylovora ATCC 49946	EAM_1931	-215	5.4	AATTGTGATGCAGATCACCATT
Yersinia pestis KIM	y2165	-218	5.1	AAATGTGATAAAAATCGCAAAT
Serratia proteamaculans 568	Spro_2728	-227	5.6	ATATGTGATACCGATCACATAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2344	-235	5.8	AATTGTGATGTGTATCACATAA
Edwardsiella tarda EIB202	ETAE_1483	-227	5.1	TTTTGTGATGAGCATCACAAAC
Proteus mirabilis HI4320	PMI1504	-226	5.6	AAATGTGATACATTTCACATAA
Photorhabdus luminescens subsp. laumondii TTO1	plu2558	-224	5.4	TATTGTGATGTGACTCGCATAT

Position: -117 Score: 4.5 Sequence: AAATGTGATTCAAATCCTAAAA Locus tag: XBJ1_2456
	XBJ1_2456	-117	4.5	AAATGTGATTCAAATCCTAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dadA
Ortholog function: D-amino acid dehydrogenase small subunit
Escherichia coli str. K-12 substr. MG1655	b1189	-116	4.7	AGATGTGAGCCAGCTCACCATA
Salmonella typhimurium LT2	STM1803	-107	4.6	ATATGTGAAGCACGTCACCATA
Citrobacter koseri ATCC BAA-895	CKO_01193	-107	4.5	AGATGTGAGGTGCGTCACCATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02309	-106	4.1	TGCTGTGAGTTAAGTCACCATA
Enterobacter sp. 638	Ent638_2363	-107	4.3	AGGTGTGAGGTAAGTCACCATA
Serratia proteamaculans 568	Spro_2746	-113	4.6	AATTGTGAATGTTGTCACGTTT
Proteus mirabilis HI4320	PMI1509	-121	4.7	AAATGTGATTTGACTCTAAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu2561	-114	5.4	AATTGTGATCTAAATCATAAAT

Position: -120 Score: 4.2 Sequence: TTTTATGATTCCTTTCACTCTT Locus tag: XBJ1_2457
	XBJ1_2457	-120	4.2	TTTTATGATTCCTTTCACTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadR
Ortholog function: fatty acid metabolism regulator
Escherichia coli str. K-12 substr. MG1655	b1187	-21	3.9	CTGTGTTATGGAAATCTCACTA
Salmonella typhimurium LT2	STM1805	-21	3.8	CTGTGTAATGGAAATCTCACTA
Enterobacter sp. 638	Ent638_2365	-21	3.8	CTGTGTAATGGAAATCTCACTA
Yersinia pestis KIM	y2177	-113	3.8	CTTTATGACTGCTTTCACCATT
Proteus mirabilis HI4320	PMI1510	-111	4.4	TTTTATGATGCCATTCACTATT
		-84	3.8	ATGGTTGAGCTATATCAAAATT

Position: -267 Score: 3.6 Sequence: TATTTTGATAATTATCTTAACA Locus tag: XBJ1_2493
	XBJ1_2493	-267	3.6	TATTTTGATAATTATCTTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydhD
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b1654	-132	3.6	ATATTTGAAATGCAACAAATAG
Enterobacter sp. 638	Ent638_1793	-186	3.6	TGAAGCGCTTTTGCTCACACTA
Erwinia amylovora ATCC 49946	EAM_1665	-145	3.9	AAATGTTATTTTGTTATCATCT
Proteus mirabilis HI4320	PMI1394	-292	3.6	TAATGTGCATTTATACACTTAT

Position: -217 Score: 4.1 Sequence: AAATGGAATGCATATCACGTAA Locus tag: XBJ1_2504
	XBJ1_2504	-217	4.1	AAATGGAATGCATATCACGTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lpp
Ortholog function: major outer membrane lipoprotein
Escherichia coli str. K-12 substr. MG1655	b1677	-56	3.6	TTGTGTAATACTTGTAACGCTA
Salmonella typhimurium LT2	STM1377	-56	3.6	TTGTGTAATACTTGTAACGCTA
Citrobacter koseri ATCC BAA-895	CKO_01710	-56	3.6	TTGTGTAATACTTGTAACGCTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02134	-56	3.6	TTGTGTAATACTTGTAACGCTA
Enterobacter sp. 638	Ent638_1767	-56	3.6	TTGTGTAATACTTGTAACGCTA
Erwinia amylovora ATCC 49946	EAM_1656	-56	3.6	TTGTGTAATACTTGTAACGCTA
Serratia proteamaculans 568	Spro_2186	-55	3.6	TTGTGTAATACTTGTAACGCTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1866	-56	3.6	TTGTGTAATACTTGTAACGCTA
Edwardsiella tarda EIB202	ETAE_1852	-55	3.6	TTGTGTAATACTTGTAACGCTA
Proteus mirabilis HI4320	PMI1409	-200	4.4	TTTTGTGAAATAACACGCATTT

Position: -60 Score: 4.1 Sequence: TATTGTGATTTCAATCATTACA Locus tag: XBJ1_2512
	XBJ1_2512	-60	4.1	TATTGTGATTTCAATCATTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroH
Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase
Escherichia coli str. K-12 substr. MG1655	b1704	-106	4.3	AGGTGTGACACACCTCGCACTT
		-64	4	TATCGTGATGCGCATCACTTCC
Salmonella typhimurium LT2	STM1347	-106	4.3	AGGTGTGACACGCCTCGCACTT
		-64	4	TATCGTGATGCCCATCACTTCC
Citrobacter koseri ATCC BAA-895	CKO_01728	-115	4.3	AGGTGTGAAACGCCTCGCATTT
		-64	4.3	TATTGTGATGCCCATCACTTCC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02162	-63	4	TATCGTGATGCGCATCACTTCC
Enterobacter sp. 638	Ent638_1743	-126	3.6	AGTTATGATCGCTTTCACTCTC
		-62	3.6	TAAGGTGATGCCCATCACTTCC
Yersinia pestis KIM	y1928	-64	4.3	TATTGTGATCGCCATCACTTCC
Serratia proteamaculans 568	Spro_2172	-135	3.9	TTTTGTGCTTTTTTTAGCGATT
		-64	4.3	TATTGTGATCGCCATCACTTCC
Edwardsiella tarda EIB202	ETAE_1792	-63	4	TATCGTGATCCCCATCACTTCC
Proteus mirabilis HI4320	PMI1423	-55	3.9	TATTGTGATCTTAATCACTGGG
Photorhabdus luminescens subsp. laumondii TTO1	plu2630	-62	3.8	TATTGTAATTTCCATTATCTAT

Position: -285 Score: 3.5 Sequence: AATGTTTATTTTTTTCACTTTT Position: -221 Score: 3.5 Sequence: ATATCAGACGAAAATCAAATAT Locus tag: XBJ1_2549
	XBJ1_2549	-285	3.5	AATGTTTATTTTTTTCACTTTT
		-221	3.5	ATATCAGACGAAAATCAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tcyP
Ortholog function: L-cystine uptake protein TcyP
Escherichia coli str. K-12 substr. MG1655	b1729	-90	3.9	ATATAAGAGCCAGCTCACAGTT
Salmonella typhimurium LT2	STM1320	-91	3.9	ATATAAGAGCCAGCTCACAGTT
Citrobacter koseri ATCC BAA-895	CKO_01755	-90	3.7	ATATAAGAGGTCGGTCACAGTT
Yersinia pestis KIM	y1878	-166	3.6	TGATTTGATTTAATACAAATCA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2410	-176	3.7	TGACGTTATCTGCTGCACCCAT

Position: -194 Score: 4.3 Sequence: TTTTGTGACTGGCGTCTAATTA Locus tag: XBJ1_2845
	XBJ1_2845	-194	4.3	TTTTGTGACTGGCGTCTAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Escherichia coli str. K-12 substr. MG1655	b1109	-154	3.9	AAACTTGATTAACATCAATTTT
Salmonella typhimurium LT2	STM1211	-154	4.1	AAACTTGATGCACATCAATTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01106	-152	4.1	AAACTTGATGCACATCAATTTT
Enterobacter sp. 638	Ent638_1624	-153	4	AAACTTGATTCATATCAATTTT
Erwinia amylovora ATCC 49946	EAM_1473	-55	3.7	TAAGGTTATTTTATTAACCTTT
Yersinia pestis KIM	y1777	-152	3.8	AAAGTTGATATATATCAATTTT
Serratia proteamaculans 568	Spro_1926	-153	4.3	AAGTTTGATGTACATCAATTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1815	-153	4	TAAATTGATATATATCAATTTT
Edwardsiella tarda EIB202	ETAE_2070	-166	4.3	TTATTTGATTTGAATCAATTTT
Proteus mirabilis HI4320	PMI0875	-157	4.6	TTTTTTGATATAAATCAACTTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2821	-154	3.8	GAATTTGATGTTGTTCAATTTT

Position: -131 Score: 3.7 Sequence: CTTTTAGATCGAGATAACACAA Locus tag: XBJ1_2884
	XBJ1_2884	-131	3.7	CTTTTAGATCGAGATAACACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fruK
Ortholog function: 1-phosphofructokinase
Escherichia coli str. K-12 substr. MG1655	b2168	-178	4.3	AATTGTGCAGCACATCAAACTT
Salmonella typhimurium LT2	STM2205	-177	4.6	AAATGTGCTTCACCTCAAAAAA
Citrobacter koseri ATCC BAA-895	CKO_00614	-50	4.1	AAGTGTGCTTTATCTCTAAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02599	-177	3.5	AAGTGTGCAGTACCTCTAAGTT
Enterobacter sp. 638	Ent638_2762	-178	4.3	AAATGTGCTGCACTTCTAAATT
Erwinia amylovora ATCC 49946	EAM_2222	-179	4.4	AAATGTGCTGGCTGTCAAAAAT
Yersinia pestis KIM	y2886	-178	4.1	AAATGTGCGGAATGTCAAAAAT
Serratia proteamaculans 568	Spro_3229	-177	4	AAGTGTGCGTGAGGTCAAAAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2728	-180	4.1	AAATGTGCGTGATGTCAAAATT
Edwardsiella tarda EIB202	ETAE_2302	-199	4.1	AAATGTGCTGAAGGTCTAAAAT
Proteus mirabilis HI4320	PMI2157	-254	4.6	AAACGTGATTTAGATCTAACTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2858	-72	3.7	TTTAGTGATATAAATAGAACTG

Position: -132 Score: 4.2 Sequence: AAATGTGTTGGTTCGCACACTT Locus tag: XBJ1_2893
	XBJ1_2893	-132	4.2	AAATGTGTTGGTTCGCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: spr
Ortholog function: predicted peptidase, outer membrane lipoprotein
Escherichia coli str. K-12 substr. MG1655	b2175	-130	4.1	TTTTGTGCGTTAGTCCACAGAT
Salmonella typhimurium LT2	STM2214	-128	3.7	ATTTGTGCGTTCCGCCACAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02608	-292	3.6	TAGGGTAATCTCGTTCTCGTTT
		-234	4.2	AATTGTGCGTGACTGCACAAAT
Enterobacter sp. 638	Ent638_2771	-250	3.6	AATCGCTTTGTCTATCACAATT
Yersinia pestis KIM	y2908	-128	3.7	GAATGTGCGTTCATGCACATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2735	-159	3.9	TAATGTGCATTCTGGCACACTT
Edwardsiella tarda EIB202	ETAE_2298	-131	4.4	AAGTGTGTTCTGCTGCACAATT
Proteus mirabilis HI4320	PMI0831	-129	4.2	TTACGTGCTTTAGAGCACGTTT

Position: -185 Score: 4.1 Sequence: AAATGAGAGTTTGATCTCACTT Locus tag: XBJ1_2894
	XBJ1_2894	-185	4.1	AAATGAGAGTTTGATCTCACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yejG
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b2181	-158	3.7	AAACGTGACCACGCCCGCAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02614	-204	3.8	AAAGTTGTTTTGGATCACAGAA
Erwinia amylovora ATCC 49946	EAM_2233	-177	3.6	AAATGAGCATTACTTCTCAAAA
Yersinia pestis KIM	y2914	-238	4.4	AAATGGGATCTGAATCCCAAAT
Serratia proteamaculans 568	Spro_3250	-214	4.2	AAATGCGAGCTGAGTCGCAAAA
		-121	4.1	GCTTGTGATGTTTTTTACATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2740	-178	4	ATTCGTGATCAGTTTGGCATTA
		-101	3.8	TGTTGTTTTTTTGTTCACGAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu2865	-185	4.1	AAATGAGAGATTGATCTCACTT
		-183	3.6	ATGAGAGATTGATCTCACTTTT
		-141	3.8	TAATGTAATACTATAAACACAA

Position: 7 Score: 3.7 Sequence: TATTTAGATCCGTTCAACATAA Locus tag: XBJ1_2941
	XBJ1_2941	7	3.7	TATTTAGATCCGTTCAACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: astA
Ortholog function: arginine succinyltransferase
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01494	-274	4	TATCTTGATGATCTTCAAAAAG
Photorhabdus luminescens subsp. laumondii TTO1	plu3109	-66	3.8	AAAGATGATGCGGAGCATATTA

Position: -246 Score: 4.3 Sequence: AATTGTGAAAAACATCATAAAG Locus tag: XBJ1_2942
	XBJ1_2942	-246	4.3	AATTGTGAAAAACATCATAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: astC
Ortholog function: bifunctional succinylornithine transaminase/acetylornithine transaminase
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01493	-274	4	TATCTTGATGATCTTCAAAAAG
Photorhabdus luminescens subsp. laumondii TTO1	plu3110	-66	3.8	AAAGATGATGCGGAGCATATTA

Position: -204 Score: 4.5 Sequence: CGATGTGATGTAAAACACAAAA Position: -94 Score: 4.1 Sequence: TGACTTTATCTGTGTCACATTT Locus tag: XBJ1_2985
	XBJ1_2985	-204	4.5	CGATGTGATGTAAAACACAAAA
		-94	4.1	TGACTTTATCTGTGTCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hutU
Ortholog function: urocanate hydratase
Citrobacter koseri ATCC BAA-895	CKO_02357	-123	3.8	AAGCGTGATTGCTGACGCAATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00795	-124	4	AAACGTGATTGCTGACGCAATA
Enterobacter sp. 638	Ent638_1263	-120	4	AAGCGTGATAGCTAACGCAATA
Erwinia amylovora ATCC 49946	EAM_1253	-121	3.8	TTTTGTGACAAAGCTGGCACAA
Yersinia pestis KIM	y4038	-261	4.9	ATATGTGATTTGGTGCGCAAAT
Serratia proteamaculans 568	Spro_0805	-196	4.8	TATTGTGATTTGACGCGCAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu3193	-203	4.7	ATTTGTGATTATAAACACAAAA

Position: -194 Score: 4 Sequence: TTTTGTTAAGTTCGTCCCATTT Locus tag: XBJ1_2995
	XBJ1_2995	-194	4	TTTTGTTAAGTTCGTCCCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadL
Ortholog function: Long-chain fatty acid transport protein
Escherichia coli str. K-12 substr. MG1655	b2344	-269	4.8	ATAAGTGACCGAAATCACACTT
		-247	3.9	AAAAATGATCTAAAACAAAATT
Salmonella typhimurium LT2	STM2391	-262	4.8	TTAAGTGACCGAAATCACACTT
		-240	3.9	AAAAATGATCTAAAACAAAAAT
Citrobacter koseri ATCC BAA-895	CKO_00446	-263	4.8	ATAAGTGACCGAAATCACACTT
		-241	3.9	AAAAATGATCTAAAACAAAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02726	-264	4.7	TTAAGTGACAGAAATCACACTT
		-242	3.9	AAAAATGATCTAAAACAAAAAT
Enterobacter sp. 638	Ent638_2884	-269	4.2	GTAAGTGACCGATATCACACTA
		-247	4	AAAAATGATCTAGCGCAAAAAT
		-214	3.7	ATGAGTGCGACGGCTCGCATTT
Erwinia amylovora ATCC 49946	EAM_2348	-194	3.9	TTTTGTTAAGCAGATCTCTTTT
Serratia proteamaculans 568	Spro_3381	-271	5.1	TTAAGTGATGGAAATCACAAAT
		-196	3.8	TTTTGTTAGCCAGATCTCTCTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3081	-332	3.8	AATTTTTATCTTCCTTATATTT
		-262	4.9	TTTAGTGATATCAGTCACATTA
Proteus mirabilis HI4320	PMI1810	-326	3.7	AAGTGTTAATTATCTATCATAA
		-186	4.2	TAATGTTAACTAAATCCCAAAT

Position: -239 Score: 3.8 Sequence: AAAAGCGATTTGTATCACCACA Position: -217 Score: 3.9 Sequence: AGGTCTGACTAAGGTCACAAAT Locus tag: XBJ1_3033
	XBJ1_3033	-239	3.8	AAAAGCGATTTGTATCACCACA
		-217	3.9	AGGTCTGACTAAGGTCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glyA
Ortholog function: serine hydroxymethyltransferase
Escherichia coli str. K-12 substr. MG1655	b2551	-229	3.8	GAATGTGATGAAGTGAAAAATT
Proteus mirabilis HI4320	PMI1867	-210	3.8	TAGCGAGATGTGCCTCAAAAAG
Photorhabdus luminescens subsp. laumondii TTO1	plu3291	-178	3.8	TAGCGTAATTTTCATTACACTA

Position: -2 Score: 4.3 Sequence: CTATGTTATTTTTTTCACCATT Locus tag: XBJ1_3043
	XBJ1_3043	-2	4.3	CTATGTTATTTTTTTCACCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yedJ
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b1962	-287	4.6	TGGTGTGATCAGGCGCACATTA
Salmonella typhimurium LT2	STM1993	-70	5.5	AAATGTGATTAATATCACATTA
		-34	4.4	TCATATGACTTACATCACAAAA
Citrobacter koseri ATCC BAA-895	CKO_00980	-168	3.8	TTTTGTGAATGTTTTATCGTAA
Erwinia amylovora ATCC 49946	EAM_2082	-129	3.8	TGATGTAATGAGCAACAAATAA
		-101	4.4	AAGTTTGATGTGGCTAAAATTA
Photorhabdus luminescens subsp. laumondii TTO1	plu0518	-156	5.6	AAATGTGATGTGAATCACACAA

Position: -155 Score: 4.6 Sequence: TGTGGTGACGTTTATCACATAT Locus tag: XBJ1_3174
	XBJ1_3174	-155	4.6	TGTGGTGACGTTTATCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagE
Ortholog function: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
Enterobacter sp. 638	Ent638_1194	-162	4.4	TTTGGTGACAAAACTCACAAAA
		-128	3.6	ATTTGCGATACGAATTAATTTT
Yersinia pestis KIM	y1203	-206	4.9	TTTGGTGATATTTATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1327	-202	5	TTTGGTGATTTTTATCACATAA
Edwardsiella tarda EIB202	ETAE_2616	-157	4.8	ATTGGTGATAGTTATCACAAAT
Proteus mirabilis HI4320	PMI0455	-150	4.6	ATAGGTGACTTTAATCACAAAT

Position: -103 Score: 3.6 Sequence: TTTTGTTATATATTTCGTGATC Position: -91 Score: 4.1 Sequence: TTTCGTGATCTACGTTACAGAC Locus tag: XBJ1_3221
	XBJ1_3221	-103	3.6	TTTTGTTATATATTTCGTGATC
		-91	4.1	TTTCGTGATCTACGTTACAGAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: cspE
Ortholog function: cold shock protein E
Escherichia coli str. K-12 substr. MG1655	b0623	-114	4	TAACGCGACTTTTATCACTTTT
Salmonella typhimurium LT2	STM0629	-114	4.3	TAACGCGATATTTATCACTTTT
Citrobacter koseri ATCC BAA-895	CKO_02534	-21	4.3	TAACGCGATATTTATCACTTTT
Enterobacter sp. 638	Ent638_1159	-114	3.8	TAACGCGACTTTTGTCACTTTT
Erwinia amylovora ATCC 49946	EAM_1116	-113	3.6	AAAAACGATATTTATCACTTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1294	-113	3.9	TTTAGCGACTTTTATCACTTTT

Position: -84 Score: 4.2 Sequence: AAAAGTGATTTAGATCATTCTT Locus tag: XBJ1_3261
	XBJ1_3261	-84	4.2	AAAAGTGATTTAGATCATTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: raiA
Ortholog function: stationary phase translation inhibitor and ribosome stability factor
Escherichia coli str. K-12 substr. MG1655	b2597	-81	4.8	TTATGAGATTTTCATCACACAT
Citrobacter koseri ATCC BAA-895	CKO_03918	-40	5.2	TAATGTGATTTAAATCACGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02919	-88	5.6	AAATGTGATTTATATCACACAT
Enterobacter sp. 638	Ent638_3076	-81	5.4	ATGTGTGATTTAGATCACACAT
Erwinia amylovora ATCC 49946	EAM_2617	-83	5.2	AAATGTGATTTCAATCACGATT
Serratia proteamaculans 568	Spro_0882	-83	4.8	ATACGTGATTTTCATCACGCAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3349	-86	4	AAAAGCGATCAATCTCACGCTT
Edwardsiella tarda EIB202	ETAE_2834	-82	3.8	ATCCGTGATTTTCCTCTCACAC
Proteus mirabilis HI4320	PMI0391	-82	4.6	AAAAGTGATCTTGATCATGTTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1266	-87	5.1	AATAGTGATTTAGATCACCTTT

Position: -232 Score: 3.6 Sequence: TCGAGTGATTCAGCTCAAGCAA Locus tag: XBJ1_3325
	XBJ1_3325	-232	3.6	TCGAGTGATTCAGCTCAAGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yafK
Ortholog function: hypothetical protein
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00238	-208	3.7	AAATGCGAGCTATTGCGCAAAG
Yersinia pestis KIM	y0949	-217	3.7	TTATTTTATACAAAACATATAT
Serratia proteamaculans 568	Spro_0952	-136	4.2	TTTTTTTATACACAACACATAT
Proteus mirabilis HI4320	PMI0351	-297	3.7	AATTGTTACTATTTTCTCTTAT
		-228	3.7	TCGAGTGATTTAGCTCAAGCAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1195	-232	3.9	TCAAGTGATTTAGTTCAAGCAA

Position: -212 Score: 4.2 Sequence: TTTAGTGAGATATATCACATCC Locus tag: XBJ1_3444
	XBJ1_3444	-212	4.2	TTTAGTGAGATATATCACATCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: serA
Ortholog function: D-3-phosphoglycerate dehydrogenase
Escherichia coli str. K-12 substr. MG1655	b2913	-210	4.1	TTTGGTGACATGTGTCACGCTT
Salmonella typhimurium LT2	STM3062	-217	4.5	TTTGGTGACATGTATCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03348	-214	4.6	TTTGGTGACTTCTGTCACATTT
Enterobacter sp. 638	Ent638_3332	-215	4.1	TTCGGTGACTTGTATCACGTTT
Yersinia pestis KIM	y3301	-126	4.8	TTTGGTGATATATATCACATTC
Serratia proteamaculans 568	Spro_3923	-215	4.4	TTTGGTGACATATGTCACATTG
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3905	-214	3.9	TTTGGTACTTAATATCACATTT
Proteus mirabilis HI4320	PMI2031	-210	4	TTCAGTGATATATATCACACGA
Photorhabdus luminescens subsp. laumondii TTO1	plu3605	-207	4.4	TTTAGTGATATATTTCATATCT
		-178	4.2	TTATTTGATCTAAATCCTAATT
		-105	4.4	TTATGTGATGGGAATAGCAATC

Position: -108 Score: 3.8 Sequence: TTTTGTGCTGCACAGCACTATG Locus tag: XBJ1_3445
	XBJ1_3445	-108	3.8	TTTTGTGCTGCACAGCACTATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpiA
Ortholog function: Ribose 5-phosphate isomerase A (EC 5.3.1.6)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03349	-82	3.9	TTGTGTGATCTGCATCGCAGGG
Enterobacter sp. 638	Ent638_3333	-47	3.8	TAATGTGACACCGGTCACAGGG
Yersinia pestis KIM	y3302	-114	4.2	AACTGTGATCTCGCTAGAATTA
Edwardsiella tarda EIB202	ETAE_2950	-276	4	TTTTGTTATGTATAAAACGTTA
Proteus mirabilis HI4320	PMI2032	-96	3.8	TAAAATGTTGTGTCTCAAATTT

Position: -78 Score: 4 Sequence: CATAGTGCTGTGCAGCACAAAA Locus tag: XBJ1_3446
	XBJ1_3446	-78	4	CATAGTGCTGTGCAGCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: iciA
Ortholog function: chromosome replication initiation inhibitor protein
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03350	-107	3.8	CCCTGCGATGCAGATCACACAA
Enterobacter sp. 638	Ent638_3334	-126	3.9	CCCTGTGACCGGTGTCACATTA
		-48	3.7	ATTTGTGTCATAGTGCAGAATA
Yersinia pestis KIM	y3303	-249	3.7	TAATTCTAGCGAGATCACAGTT
Edwardsiella tarda EIB202	ETAE_2951	-48	3.8	TAACGTTTTATACATAACAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu3610	-41	3.6	CATAGTGATATTCAGAAAAATA

Position: -184 Score: 3.6 Sequence: TTATGTGAATGAATTAACATGC Locus tag: XBJ1_3452
	XBJ1_3452	-184	3.6	TTATGTGAATGAATTAACATGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: acnB
Ortholog function: Aconitate hydratase 2 (EC 4.2.1.3)
Escherichia coli str. K-12 substr. MG1655	b0118	-144	3.5	TTTTGTAAACAGATTAACACCT
Salmonella typhimurium LT2	STM0158	-157	3.9	TTTTGTAAACAGATTAACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00124	-260	3.5	TTTTGTAAACAGATTAACACCT
Yersinia pestis KIM	y0771	-276	4.3	TTATGTGAACGAATTAACACTG
Serratia proteamaculans 568	Spro_4008	-192	3.9	TTATGTGAACGAATTAACAACC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3778	-163	4.3	TTATGTGAACGAATTAACAATC
Proteus mirabilis HI4320	PMI2040	-177	4.5	TTATGTGAACGAATTAACATAG
Photorhabdus luminescens subsp. laumondii TTO1	plu3619	-261	3.6	TTCTGTGAACGAATTAACATCG

Position: -133 Score: 4.1 Sequence: TGTTGGGATTTCTGTCACGTTA Locus tag: XBJ1_3453
	XBJ1_3453	-133	4.1	TGTTGGGATTTCTGTCACGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lpdA
Ortholog function: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Escherichia coli str. K-12 substr. MG1655	b0116	-224	3.3	AATTGTTAACAATTTTGTAAAA
Salmonella typhimurium LT2	STM0154	-153	3.5	GTTTGTGAGGTTATTAGCGAAA
Citrobacter koseri ATCC BAA-895	CKO_03256	-95	3.3	AATTGTTAACAATTTTGTAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00120	-105	3.3	AATTGTTAACAATTTTGTAAAA
Yersinia pestis KIM	y0769	-253	3.3	ATTGGTGATCTTGTTATTACTG
Serratia proteamaculans 568	Spro_4009	-246	3.6	TATGGTGATGTAATGAAAAAAG
Proteus mirabilis HI4320	PMI2044	-133	3.4	GGTTGTGAGATCTGTCATGTTA
Photorhabdus luminescens subsp. laumondii TTO1	plu3621	-131	3.9	TGTTGCGAGTTCTGTCACGTTA

Position: -335 Score: 3.7 Sequence: AAATTTAATTGAATTAATATAT Position: -315 Score: 3.3 Sequence: ATATGCTATGTGAATAAATATA Position: -243 Score: 3.5 Sequence: AAAATTAAACCCCATCAAATTT Position: -192 Score: 3.7 Sequence: TTTTCTGATAAAATTTAAAATA Position: -150 Score: 3.8 Sequence: TTTTATGATTTAGCTCAAGGTC Position: -18 Score: 3.3 Sequence: TGATCTGACCCGGTTCTCATGA Locus tag: XBJ1_3456
	XBJ1_3456	-335	3.7	AAATTTAATTGAATTAATATAT
		-315	3.3	ATATGCTATGTGAATAAATATA
		-243	3.5	AAAATTAAACCCCATCAAATTT
		-192	3.7	TTTTCTGATAAAATTTAAAATA
		-150	3.8	TTTTATGATTTAGCTCAAGGTC
		-18	3.3	TGATCTGACCCGGTTCTCATGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhR
Ortholog function: Transcriptional repressor for pyruvate dehydrogenase complex
Escherichia coli str. K-12 substr. MG1655	b0113	-156	3.7	AAACGTTATATATGTCAAGTTG
		-131	3.8	AAATGTGCACAGTTTCATGATT
Salmonella typhimurium LT2	STM0151	-157	3.5	AAACATGATTTCTGTAAAATTG
		-120	3.2	TTTACTGATTTCAATCAAAACC
		-79	3	CTTATTAAGCTTTCTCACGAAA
		-54	3.4	TAATGGGACAGGTTCCAGATAA
Citrobacter koseri ATCC BAA-895	CKO_03260	-180	3.2	ATTTGTGCATAGTTACATCTTT
		-157	3.1	AAACGTTATTTCTGTAATCTTG
		-148	3.3	TTCTGTAATCTTGTTAAAATGT
		-120	3.2	TTTACTGATTTCAATCAAAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00117	-155	3.2	AAATGTTATTTCTGTAAGGTTG
		-118	3.2	TTTACTGATTTCAATCAAAACC
Enterobacter sp. 638	Ent638_0659	-120	3.2	TTTACTGATTTCAATCAAAACC
		-77	3.1	TATTGTATTTTCTGGCGAAAAT
		-68	3	TTTAGCGATACGAATATGAAAT
Erwinia amylovora ATCC 49946	EAM_0746	-198	3.3	TAAAGCGATCGGATTTAACAAT
Yersinia pestis KIM	y0766	-151	4.2	AAATGTGCTGGGTTTCATGATT
		-139	3.3	TTTCATGATTTCGGTCAAGGTC
		-74	3.4	TTTTGAAATTGGTATTACCAAT
Serratia proteamaculans 568	Spro_4012	-132	3.1	AAATGTGCGGGTAACCTGATTT
		-56	3.4	TTTTGAAATTGGTATTACCAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3790	-120	3.7	ATTGGTGATTTAGCTCAAGGTC
		-55	3.4	TTTTGAAATTGGTATTACCAAT
Edwardsiella tarda EIB202	ETAE_0658	-143	3.2	TTTCATGATTTACATCAATAGT
Proteus mirabilis HI4320	PMI2047	-218	3.1	TGTTTTTAATCTTTTCTAATAA
		-199	4.4	TAATGCGATCTAGTTATCAAAT
		-181	4.2	AAATTTGATGAATTTATCAAAT
		-158	3	ATTTGTTAAAATTTGCAGGTTT
		-138	3.9	TTTTATGATTTCGCTCAACAAC
		-95	3.1	CTTTGTTACTTTATTATCCATT
		-89	3.1	TACTTTATTATCCATTACATTA

Position: -139 Score: 3.3 Sequence: ATTTCTGGTGTGTTTTTCATTT Position: -121 Score: 4 Sequence: ATTTGCGAACCAGCTCGAAAAT Locus tag: XBJ1_3459
	XBJ1_3459	-139	3.3	ATTTCTGGTGTGTTTTTCATTT
		-121	4	ATTTGCGAACCAGCTCGAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppdD
Ortholog function: predicted major pilin subunit
Escherichia coli str. K-12 substr. MG1655	b0108	-145	3.2	CTTCGTAACGCCTCGCAAATTT
Citrobacter koseri ATCC BAA-895	CKO_03268	-146	3.4	TTTTTCGAGCGGCCTCGCAAAC
Yersinia pestis KIM	y0761	-123	3.8	TTACGTTATTGCAATAACCTAA
Proteus mirabilis HI4320	PMI2049	-146	4.3	TAATGCGAACTTGCTCTCAATA

Position: -333 Score: 5.2 Sequence: TGATGTGATACTAATCACAATA Position: -281 Score: 4.3 Sequence: TAGTGTGATTTGTAACGCGAAT Locus tag: XBJ1_3542
	XBJ1_3542	-333	5.2	TGATGTGATACTAATCACAATA
		-281	4.3	TAGTGTGATTTGTAACGCGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoC
Ortholog function: 2-deoxyribose-5-phosphate aldolase
Escherichia coli str. K-12 substr. MG1655	b4381	-149	4.6	TTATTTGAACCAGATCGCATTA
		-96	4.5	AATTGTGATGTGTATCGAAGTG
Salmonella typhimurium LT2	STM4567	-133	4.9	TAATTTGATTCAGATCTCATTA
		-80	4.2	AACTGTGATGTATATCGAAGTG
Citrobacter koseri ATCC BAA-895	CKO_03410	-134	4.2	TTATTTGAAGTGGATCTCGTTA
		-81	4.2	AACTGTGATGTATATCGAAGTG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04837	-158	5.2	ATTTGTGATTTTAATCACGTTA
		-105	3.7	AACTGTGATGAATGTCGAAGTG
Enterobacter sp. 638	Ent638_0541	-151	4.6	AAATTTGAAGTGGATCTCATTA
		-98	3.7	AACTGTGATGAATGTCGAAGTG
Erwinia amylovora ATCC 49946	EAM_0615	-233	4.6	TGATGTGATAATTCTAACATTA
Yersinia pestis KIM	y3743	-169	3.7	TGCGGTGAGATGGATCTCAATT
Serratia proteamaculans 568	Spro_0660	-262	4.6	ATTTGTGAACGATATCGCGTTA
		-240	5.5	TTTTGTGATGGTCTTCACATAT
		-188	3.8	TAGTGTGACTGTGAACGCGAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0727	-282	4.4	AAGTGTGAATGAATGCACAAAA
Proteus mirabilis HI4320	PMI2416	-267	4.4	ATATGTGAGTTACTTCGCAACT
		-135	5.6	TTTTGTGATTCTGATCACAATT
		-83	4.5	TATTGTGACAGAAAGCACATCT

Position: -184 Score: 5.5 Sequence: TTATGTGATCTGGATCTCATTT Locus tag: XBJ1_3543
	XBJ1_3543	-184	5.5	TTATGTGATCTGGATCTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nupC2
Ortholog function: Na+ dependent nucleoside transporter
Yersinia pestis KIM	y3744	-154	3.8	CTTTGTCAATAACCTCACATAT
		-115	5.5	TAATGTGATTATGATCACATTT
Serratia proteamaculans 568	Spro_0659	-181	3.9	AACCGTGACGCATGTCACGTAC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0473	-182	4.9	AATTGTGACGAAGATCACTTTT
Edwardsiella tarda EIB202	ETAE_0482	-232	4.9	TGATGTGATATGCATCACTTTT
Proteus mirabilis HI4320	PMI2418	-180	5.2	TAGTGTGATTTAGATCTCATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu0519	-178	5.5	TTGTGTGATTCACATCACATTT

Position: -238 Score: 4.7 Sequence: ATGTGTGATTGAAGTCACGATT Locus tag: XBJ1_3572
	XBJ1_3572	-238	4.7	ATGTGTGATTGAAGTCACGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fxsA
Ortholog function: suppressor of F plamsid exlusion of phage T7
Escherichia coli str. K-12 substr. MG1655	b4140	-202	4.1	TACCGTAATCTGGATCACTTTA
		-152	4.3	ATTTGTGAAATAGATCACCGCT
Salmonella typhimurium LT2	STM4327	-203	4.1	TACCGTAATCTGGATCACTTAA
		-153	4.1	TTTTGTGAAATAGGTCACCGCT
Citrobacter koseri ATCC BAA-895	CKO_03695	-156	4.1	TTTTGTGAAATAGGTCACCGCT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04530	-140	3.7	ATCTGTGAAATGGGTCACCGCT
Enterobacter sp. 638	Ent638_0327	-151	3.8	ATCTGTGAAATGAATCACCGCT
Erwinia amylovora ATCC 49946	EAM_0417	-161	3.9	ATATCTGTTCCAGGTCACATTG
Yersinia pestis KIM	y0607	-245	4.8	ATCTGTGATTGCTCTCACACTT
Serratia proteamaculans 568	Spro_0407	-117	4.9	TTCTGTGATCTCATTCACGTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0623	-245	3.7	AACTGTGATTGTAGTCACGAGT
		-185	3.6	AAATGTGCAAAGGCGCACCCAT
Edwardsiella tarda EIB202	ETAE_0312	-189	4.6	ATCTGTGATAATACTCACAGAT
Proteus mirabilis HI4320	PMI2545	-188	4.7	TTTTGTGATCTATCTCATGGAT
Photorhabdus luminescens subsp. laumondii TTO1	plu4136	-188	5.6	ATATGTGATATTTATCACAATT

Position: -216 Score: 4.9 Sequence: AATCGTGACTTCAATCACACAT Position: -101 Score: 3.9 Sequence: ATAAGTGATTAATATCACGGCA Locus tag: XBJ1_3573
	XBJ1_3573	-216	4.9	AATCGTGACTTCAATCACACAT
		-101	3.9	ATAAGTGATTAATATCACGGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aspA
Ortholog function: aspartate ammonia-lyase
Escherichia coli str. K-12 substr. MG1655	b4139	-206	4.5	AGCGGTGATCTATTTCACAAAT
		-156	4.2	TAAAGTGATCCAGATTACGGTA
Salmonella typhimurium LT2	STM4326	-209	4.2	AGCGGTGACCTATTTCACAAAA
		-159	4.2	TTAAGTGATCCAGATTACGGTA
Citrobacter koseri ATCC BAA-895	CKO_03696	-54	4.2	AGCGGTGACCTATTTCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04529	-204	3.9	AGCGGTGACCCATTTCACAGAT
		-154	3.8	ATAAGTGATCAAGCTTACTGAT
Enterobacter sp. 638	Ent638_0326	-205	4.1	AGCGGTGATTCATTTCACAGAT
Erwinia amylovora ATCC 49946	EAM_0416	-228	4.2	CAATGTGACCTGGAACAGATAT
Yersinia pestis KIM	y0606	-224	4.6	AAGTGTGAGAGCAATCACAGAT
Serratia proteamaculans 568	Spro_0406	-205	4.7	AAACGTGAATGAGATCACAGAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0621	-272	4	ACTCGTGACTACAATCACAGTT
Edwardsiella tarda EIB202	ETAE_0311	-197	4.4	ATCTGTGAGTATTATCACAGAT
Proteus mirabilis HI4320	PMI2546	-206	4.1	ATCCATGAGATAGATCACAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu4137	-274	3.8	AGATATAATTGGGGTCACAGTT
		-211	5.6	AATTGTGATAAATATCACATAT

Position: -144 Score: 4 Sequence: AATTCTGATATGCTTTGCAAAA Locus tag: XBJ1_3682
	XBJ1_3682	-144	4	AATTCTGATATGCTTTGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hpt
Ortholog function: hypoxanthine phosphoribosyltransferase
Escherichia coli str. K-12 substr. MG1655	b0125	-147	5.3	ATGTGTGATCGTCATCACAATT
Salmonella typhimurium LT2	STM0170	-147	5.3	ATGTGTGATCGTCATCACAAAA
Citrobacter koseri ATCC BAA-895	CKO_03242	-135	5.3	AAGTGTGATCGTCATCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00133	-134	5.4	AAGTGTGATCGGAATCACAAAT
Enterobacter sp. 638	Ent638_0673	-180	3.6	AATTTTGATAGCAATTAATTAT
		-148	5.4	AAGTGTGATCGGAATCACAAAT
Proteus mirabilis HI4320	PMI0160	-154	3.6	TACTGTAATAAGTAACAAAATT
Photorhabdus luminescens subsp. laumondii TTO1	plu0860	-144	4	AATTCTGATATGCTTTGCAAAA

Position: -86 Score: 3.4 Sequence: AATTTTTAAGTGGATTACTATA Locus tag: XBJ1_3774
	XBJ1_3774	-86	3.4	AATTTTTAAGTGGATTACTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroA
Ortholog function: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Escherichia coli str. K-12 substr. MG1655	b0908	-155	4.8	TTGTGTGATGCAAGCCACATTT
Salmonella typhimurium LT2	STM0978	-142	4.2	TTGTGTGACGCATGCCGCATTT
Citrobacter koseri ATCC BAA-895	CKO_02164	-171	4.6	TTGTGTGACGTAGCGCGCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00936	-145	3.7	TTGTGTGACGGCGGCCGCGTTT
Enterobacter sp. 638	Ent638_1428	-119	4.4	TTGTGTGACGGTGGACACATTT
Yersinia pestis KIM	y2783	-39	3.3	TATAACGATGGCAATCTCAGTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2593	-78	3.5	AAGTATGACGGGTATAAAAATG
Edwardsiella tarda EIB202	ETAE_2177	-104	3.8	TATAGTGACAGCGCTCAATAAA

Position: -226 Score: 3.3 Sequence: ATTTGTGACTGTATAGTCATAA Position: -51 Score: 3.2 Sequence: ATCCGTGATTATATAAATATTT Position: -4 Score: 3.2 Sequence: AAATATGAGCAAGGTTACTGTT Locus tag: XBJ1_3776
	XBJ1_3776	-226	3.3	ATTTGTGACTGTATAGTCATAA
		-51	3.2	ATCCGTGATTATATAAATATTT
		-4	3.2	AAATATGAGCAAGGTTACTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroA
Ortholog function: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Escherichia coli str. K-12 substr. MG1655	b0908	-155	4.8	TTGTGTGATGCAAGCCACATTT
Salmonella typhimurium LT2	STM0978	-142	4.2	TTGTGTGACGCATGCCGCATTT
Citrobacter koseri ATCC BAA-895	CKO_02164	-171	4.6	TTGTGTGACGTAGCGCGCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00936	-145	3.7	TTGTGTGACGGCGGCCGCGTTT
Enterobacter sp. 638	Ent638_1428	-119	4.4	TTGTGTGACGGTGGACACATTT
Yersinia pestis KIM	y2783	-39	3.3	TATAACGATGGCAATCTCAGTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2593	-78	3.5	AAGTATGACGGGTATAAAAATG
Edwardsiella tarda EIB202	ETAE_2177	-104	3.8	TATAGTGACAGCGCTCAATAAA

Position: -129 Score: 3.7 Sequence: GTTCGTGATCATGATCTCTTTA Locus tag: XBJ1_3816
	XBJ1_3816	-129	3.7	GTTCGTGATCATGATCTCTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rnk
Ortholog function: Regulator of nucleoside diphosphate kinase
Escherichia coli str. K-12 substr. MG1655	b0610	-140	3.8	GAATGTGACGCAAATCACTTCA
Salmonella typhimurium LT2	STM0616	-141	3.8	GAATGTGAACTAAATCACTTCA
Citrobacter koseri ATCC BAA-895	CKO_02549	-141	3.9	GAATGTGAGCTAAATCACTTCA
Enterobacter sp. 638	Ent638_1148	-187	4.1	AAATCTGAGAACGATCACGTTT
		-140	3.8	GAATGTGACATTCATCACTTCA
Serratia proteamaculans 568	Spro_4382	-170	3.7	CTTCGTGATCGGGATCTCTTTC
		-67	3.8	TTTTGTGCTGTTTTTCCGAATT
Edwardsiella tarda EIB202	ETAE_0492	-145	4.4	ATTTGTGAGCCAGCTCTCTTTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4046	-127	3.7	GTTCGTGATCATGATCTCTTTA

Position: -349 Score: 4.4 Sequence: ATTAATGATCTCAGTCACAAAA Locus tag: XBJ1_3852
	XBJ1_3852	-349	4.4	ATTAATGATCTCAGTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltB
Ortholog function: glutamate synthase, large subunit
Escherichia coli str. K-12 substr. MG1655	b3212	-199	4.2	AATTTTGCGCTAAAGCACATTT
Salmonella typhimurium LT2	STM3330	-288	3.7	ATCTGTGCTACAGCACACTTTT
Enterobacter sp. 638	Ent638_3656	-298	3.9	GATAGTGAGTCAGATCACACTC
Edwardsiella tarda EIB202	ETAE_0527	-278	4.9	AACTGTGATGCAGCCCACATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4009	-241	4	ATATTTGACCTGATTTATATTT

Position: -206 Score: 3.9 Sequence: ATTTTTAAATATATTCACATTA Position: -145 Score: 4.1 Sequence: TTTCTTGATACTTGTCACAATC Position: -86 Score: 4 Sequence: AAATTTGATCTCAATCTCATCC Locus tag: XBJ1_3871
	XBJ1_3871	-206	3.9	ATTTTTAAATATATTCACATTA
		-145	4.1	TTTCTTGATACTTGTCACAATC
		-86	4	AAATTTGATCTCAATCTCATCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadH
Ortholog function: 2,4-dienoyl-CoA reductase [NADPH] (2,4-dienoyl coenzyme A reductase)
Escherichia coli str. K-12 substr. MG1655	b3081	-112	3.9	CTTTTTGAATCCCATCACAAAC
Salmonella typhimurium LT2	STM3219	-113	4.3	TTTTTTGAATCCCATCACAATC
Citrobacter koseri ATCC BAA-895	CKO_04487	-113	4.3	TTTTTTGAATCCCATCACAATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03510	-111	3.9	TTCTTTGAATCCCATCACAATC
Enterobacter sp. 638	Ent638_3539	-111	3.9	ATCTTTGAATCCCATCACATTC
Erwinia amylovora ATCC 49946	EAM_0507	-169	3.8	AACCGTGACTGAGATCGCTAAA
Yersinia pestis KIM	y3589	-131	4	ATTCATGACGGCTATCACAATC
Serratia proteamaculans 568	Spro_4309	-126	4.2	ATTCATGACATCTATCACATTC
Proteus mirabilis HI4320	PMI3702	-213	3.8	TATTATTATATGATTAAAAAAT
		-103	3.8	TTCCATGATTAAGATCACAACT
Photorhabdus luminescens subsp. laumondii TTO1	plu3990	-161	4.3	TTTCATGACCTTCATCACATTC

Position: -176 Score: 3.9 Sequence: TTTCATGATGGAACTAAAATTA Position: -111 Score: 3.7 Sequence: TATTTTGACCAATATCAGTAAT Locus tag: XBJ1_4002
	XBJ1_4002	-176	3.9	TTTCATGATGGAACTAAAATTA
		-111	3.7	TATTTTGACCAATATCAGTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pgi
Ortholog function: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Salmonella typhimurium LT2	STM4221	-61	3.7	TTCTGTGACTGGCGTTACAATC
Citrobacter koseri ATCC BAA-895	CKO_03893	-61	4.1	TTTTGTGACTGGCGTTACAATC
Serratia proteamaculans 568	Spro_4477	-80	3.7	AAAAGAGATCATAATCACAGTC
Proteus mirabilis HI4320	PMI2754	-245	3.7	CAGTGAGATGTTAAACACAGTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4379	-205	3.8	TGACGCGATGAGAATCATAAAA

Position: -271 Score: 3.7 Sequence: TGAAGCGAGCCATTTCTCATTT Position: -208 Score: 3.3 Sequence: TTATTTCTTATATATAACAAAA Position: -206 Score: 3.2 Sequence: ATTTCTTATATATAACAAAAAG Position: -117 Score: 3.4 Sequence: TCATTTGATTTATTTAAATTAA Position: -68 Score: 3.3 Sequence: GTTTTTGATTTATTTTTAATAT Position: -57 Score: 3.4 Sequence: ATTTTTAATATTGTTTACTCTT Locus tag: XBJ1_4009
	XBJ1_4009	-271	3.7	TGAAGCGAGCCATTTCTCATTT
		-208	3.3	TTATTTCTTATATATAACAAAA
		-206	3.2	ATTTCTTATATATAACAAAAAG
		-117	3.4	TCATTTGATTTATTTAAATTAA
		-68	3.3	GTTTTTGATTTATTTTTAATAT
		-57	3.4	ATTTTTAATATTGTTTACTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceB
Ortholog function: malate synthase A
Escherichia coli str. K-12 substr. MG1655	b4014	-117	3.6	AATTGTTTTTGATTTTGCATTT
Salmonella typhimurium LT2	STM4183	-168	3.3	TTAATTTATATTGTTATCAATA
Citrobacter koseri ATCC BAA-895	CKO_03906	-166	3.3	TATTTTTATTGTTATCAATAAG
Yersinia pestis KIM	y0015	-254	3.3	ATGAGTTATAGCCATTAAAAAT
Serratia proteamaculans 568	Spro_4503	-228	3.5	TGTTGTTATGTTTATTAACCAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3991	-185	3.3	TTTTTTAATTTTAATCTTCATT
Proteus mirabilis HI4320	PMI2764	-68	3.7	ATTTTTGATTTTTGTAAAAACT
Photorhabdus luminescens subsp. laumondii TTO1	plu4396	-65	3.8	GTTTTTGATTTATTTTAAATAT

Position: -79 Score: 3.8 Sequence: TTTTTCGAGGCTTTTCGCAATT Locus tag: XBJ1_4039
	XBJ1_4039	-79	3.8	TTTTTCGAGGCTTTTCGCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: malT
Ortholog function: transcriptional regulator MalT
Escherichia coli str. K-12 substr. MG1655	b3418	-142	4.3	AATTGTGACACAGTGCAAATTC
Salmonella typhimurium LT2	STM3515	-143	4.3	AATTGTGACAGAGTGCAAATTC
Citrobacter koseri ATCC BAA-895	CKO_04840	-142	4.3	AATTGTGACAGAGTGCAAATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03788	-142	4.4	ATTTGTGACATAGAGCAAATTC
Enterobacter sp. 638	Ent638_3831	-142	4.6	AATTGTGACAGAGTGCAAATTA
Yersinia pestis KIM	y3900	-202	4.6	AATTGTGATCCGTAGCAACTTA
Serratia proteamaculans 568	Spro_4637	-203	4	AAGTGTGATCAATAGCAATATA
Edwardsiella tarda EIB202	ETAE_3303	-212	3.8	AAATGTGATCAGCCGCAATTTC

Position: -151 Score: 3 Sequence: TTTTGGTATGATTATAATCTAT Position: -142 Score: 3.1 Sequence: GATTATAATCTATATAAAATTC Position: -94 Score: 3.1 Sequence: ATATGTTAAACTATTGACTTTA Locus tag: XBJ1_4089
	XBJ1_4089	-151	3	TTTTGGTATGATTATAATCTAT
		-142	3.1	GATTATAATCTATATAAAATTC
		-94	3.1	ATATGTTAAACTATTGACTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: crp
Ortholog function: cyclic AMP receptor protein
Escherichia coli str. K-12 substr. MG1655	b3357	-154	3.3	TACATTGATGTACTGCATGTAT
		-136	3.3	GTATGCAAAGGACGTCACATTA
Salmonella typhimurium LT2	STM3466	-159	3.1	TACATTGACGTACTGCATGTAT
Citrobacter koseri ATCC BAA-895	CKO_04777	-160	3.1	TACATTGACGTACTGCATGTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03743	-158	3.3	TACATTGATGTACTGCATGTAT
Enterobacter sp. 638	Ent638_3784	-128	2.9	AAACATTACAGGCTGCAAACAT
Yersinia pestis KIM	y3956	-309	3	AATTTAGACTACCCTTTCATTT
Serratia proteamaculans 568	Spro_4580	-121	3.5	ATTTATGACACGCCTCAAAACC
Proteus mirabilis HI4320	PMI2820	-135	3.3	TATTATAATCTATTCCTTATTA

Position: -35 Score: 4.6 Sequence: TTTTGTTATTGACCTCAAAAAT Locus tag: XBJ1_4092
	XBJ1_4092	-35	4.6	TTTTGTTATTGACCTCAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppiA
Ortholog function: Peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8)
Yersinia pestis KIM	y3951	-247	4.5	AAATGAGATATTTCTCGCAAAA
		-81	3.6	AAATGTGCATTCTGTTACGTAA
Serratia proteamaculans 568	Spro_4589	-181	3.9	ATGCGTGATGCAGTTGGCAAAA

Position: -242 Score: 3.4 Sequence: TTGCAATATTTCCATCACATTT Position: -213 Score: 3.9 Sequence: AAATCAGATCTCTATCAAAATA Position: -118 Score: 4 Sequence: AGTTGTTATGTCGATCAAACCA Locus tag: XBJ1_4108
	XBJ1_4108	-242	3.4	TTGCAATATTTCCATCACATTT
		-213	3.9	AAATCAGATCTCTATCAAAATA
		-118	4	AGTTGTTATGTCGATCAAACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lsrR
Ortholog function: LsrR, transcriptional repressor of lsr operon
Escherichia coli str. K-12 substr. MG1655	b1512	-87	4.1	AACTGTGGTTGCCATCACAGAT
Salmonella typhimurium LT2	STM4073	-161	3.6	AACTCTCATCCAGATCACGTTT
		-92	4	TTTTGTGGCGTTAATCACGGTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03508	-75	3.7	TTTTGCCAGTCGGCTCACACTT
Enterobacter sp. 638	Ent638_3537	-122	3.4	TTTATTGATTAGGATCCAATTC
Photorhabdus luminescens subsp. laumondii TTO1	plu3142	-137	4.3	AATTGTGATCTTGGCAATATTT

Position: -91 Score: 3.6 Sequence: ATTTACGAGTCTCTTCGCAAAA Locus tag: XBJ1_4196
	XBJ1_4196	-91	3.6	ATTTACGAGTCTCTTCGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yifB
Ortholog function: magnesium chelatase family protein
Escherichia coli str. K-12 substr. MG1655	b3765	-266	4.2	TTTTATGATGCGTTTAATAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04266	-226	4.1	TTATATGAAAAAAATCAAAAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4230	-144	3.9	AATTGCGACCCATTACGCACAA
Edwardsiella tarda EIB202	ETAE_0086	-128	3.7	TATTGTTAATGTGTTAATAATT
Photorhabdus luminescens subsp. laumondii TTO1	plu4686	-268	3.7	TAATTTAATTTAAATTTCAAAA

Position: -39 Score: 3.9 Sequence: TAATGTGATTGGGTTACTACTA Locus tag: XBJ1_4271
	XBJ1_4271	-39	3.9	TAATGTGATTGGGTTACTACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Salmonella typhimurium LT2	STM4121	-44	3.5	AATTATGAATAAAAATACATTA
Citrobacter koseri ATCC BAA-895	CKO_03036	-110	4	ATTTGTGAATAAAAATACATTA
Enterobacter sp. 638	Ent638_4028	-44	3.8	AAATGTGAATAAAAATACACTA
Yersinia pestis KIM	y0310	-43	3.7	TTTATTGACATAAATAAAAATA
Serratia proteamaculans 568	Spro_4781	-167	4	TATTGTGAATAAAAATACAATA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0192	-159	3.5	TATTTTGAATAAAAATACAATA
Edwardsiella tarda EIB202	ETAE_3482	-160	3.4	AATTATGAATAAAAATACAATA
Proteus mirabilis HI4320	PMI3237	-57	3.6	TTTTTTGAATAAAAATACATTA
Photorhabdus luminescens subsp. laumondii TTO1	plu4744	-59	3.6	TTTTTTGAATAAAAATACATTA

Position: -207 Score: 3.6 Sequence: ATTTGCGAAGTAACTCTGATAA Position: -189 Score: 4.6 Sequence: ATAAATGATTCCTATCACATTT Locus tag: XBJ1_4282
	XBJ1_4282	-207	3.6	ATTTGCGAAGTAACTCTGATAA
		-189	4.6	ATAAATGATTCCTATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cytR
Ortholog function: transcriptional repressor
Escherichia coli str. K-12 substr. MG1655	b3934	-128	3.9	AAATTCAATATTCATCACACTT
Citrobacter koseri ATCC BAA-895	CKO_03060	-129	3.8	AAATTAAATATCCATCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04229	-162	3.6	TCTTGCGAGCCGGATCGAAAAA
		-143	3.9	AAATTTAACAAGCATCACGTTT
Yersinia pestis KIM	y0297	-177	3.7	TTCTGCGAGCCAGTTCGAAAAA
		-135	3.6	TTATGCAAATTAGGTAACAAAT
Edwardsiella tarda EIB202	ETAE_3434	-258	4.2	AAGTGCGATCGGGATCGAAAAA
		-175	3.6	ATATGTGATCATATACTCATCG
Proteus mirabilis HI4320	PMI3218	-207	4.3	TTTTGCGAACTACCTCATAAAA
		-189	3.9	AAAAACGATTGGTATCACACTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4760	-213	4.2	ATTTGCGAGCCATATCGAATAA
		-195	4.6	ATAAATGATTTATATCACACTT

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of Crp regulog to Xenorhabdus bovienii SS-2004

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --