Propagation of Crp regulog to Xenorhabdus bovienii SS-2004
| Source regulog: | Crp - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Xenorhabdus bovienii SS-2004 |
| Orthologous TF(s) | XBJ1_4089 |
| Regulated genes | 169 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -316
Score: 4.4 Sequence: ATAAATGATTTTTATCACAGAT
Position: -263
Score: 5.4 Sequence: AAATGTGATATACATCACGTTT
Position: -197
Score: 3.6 Sequence: ATTTGTGAGCAATCTACCATCA
Locus tag: XBJ1_0029
|
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| XBJ1_0029 | -316 | 4.4 | ATAAATGATTTTTATCACAGAT | |
| -263 | 5.4 | AAATGTGATATACATCACGTTT | ||
| -197 | 3.6 | ATTTGTGAGCAATCTACCATCA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpI | ||||
| Ortholog function: ATP synthase subunit I | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3739 | -263 | 4.8 | ATATGTGATCTGAAGCACGCTT |
| Salmonella typhimurium LT2 | STM3872 | -262 | 4.6 | ATGTGTGATCTGGTGCACGCTT |
| -211 | 4.1 | TTTTGTACGATCGTTCACACTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00079 | -262 | 4.7 | ATATGTGATCCGAAGCACGCTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04144 | -262 | 4.7 | TTATGTGATCTGATGCACGCTT |
| Enterobacter sp. 638 | Ent638_4125 | -261 | 4.8 | TTTTGTGATCTCGTGCACGCTT |
| Erwinia amylovora ATCC 49946 | EAM_3481 | -264 | 4.4 | ATTTGTGATCGTGGACACGCTT |
| Yersinia pestis KIM | y4142 | -263 | 5.4 | TTATGTGATGTATTTCACGTTT |
| Serratia proteamaculans 568 | Spro_0001 | -265 | 4.4 | TATTGTGAGCAACTACACGTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4519 | -254 | 5 | TTATGTGAGTCACATCACAGAT |
| Edwardsiella tarda EIB202 | ETAE_3526 | -297 | 3.7 | AATCGTGAAAATATTTAAATTA |
| Proteus mirabilis HI4320 | PMI3057 | -259 | 5 | TTGTGTGTTCTAGATCACATTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0047 | -265 | 5.7 | TTATGTGATTTAAATCACATTT |
|
Position: -98
Score: 4.2 Sequence: ATGCGTGATCTTCCGCGCAAAA
Locus tag: XBJ1_0050
|
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| XBJ1_0050 | -98 | 4.2 | ATGCGTGATCTTCCGCGCAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acs | ||||
| Ortholog function: acetyl-coenzyme A synthetase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4069 | -100 | 4.1 | TTGCGTGATCTGTCGCCCAAAT |
| Salmonella typhimurium LT2 | STM4275 | -100 | 4.1 | TTGCGTGATCTGTCGCCCAAAT |
| Citrobacter koseri ATCC BAA-895 | CKO_03816 | -101 | 4.3 | TTGCGTGATCTGCCGCGCAAAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04478 | -101 | 3.9 | TTGCGTGATCTGCCCCCCAATT |
| Enterobacter sp. 638 | Ent638_0276 | -101 | 4.1 | TTGCGTGATCTGTCGCCCAAAT |
| Yersinia pestis KIM | y0510 | -97 | 4.2 | ATACGTGATCTGCCGCCCAAAA |
| Serratia proteamaculans 568 | Spro_0297 | -97 | 4 | TTGCGTGATCTGCCGCCCAAAA |
| Proteus mirabilis HI4320 | PMI3037 | -97 | 4.5 | TTTCGTGATCTTATGCGCAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0074 | -98 | 4.2 | TTGCGTGATCTTCCGCGCAAAA |
|
Position: -295
Score: 3.7 Sequence: TTTTGCGCGGAAGATCACGCAT
Locus tag: XBJ1_0051
|
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| XBJ1_0051 | -295 | 3.7 | TTTTGCGCGGAAGATCACGCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sodA | ||||
| Ortholog function: Manganese superoxide dismutase (EC 1.15.1.1) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3908 | -161 | 3.8 | GTGGGTGATTTGCTTCACATCT |
| Citrobacter koseri ATCC BAA-895 | CKO_03093 | -150 | 4.4 | ACGGGTGATTTGGCTCACATAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04217 | -150 | 4 | TTAGTTGTTCTACATCACAAAA |
| Enterobacter sp. 638 | Ent638_4063 | -160 | 3.6 | CCGCGTGAGCAGACTCACAATT |
| Proteus mirabilis HI4320 | PMI3036 | -292 | 3.7 | TTTTGCGCATAAGATCACGAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0075 | -297 | 3.7 | TTTTGCGCGGAAGATCACGCAA |
|
Position: -167
Score: 3.6 Sequence: TTTTGTTAATAACATTAAAAAT
Locus tag: XBJ1_0068
|
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| XBJ1_0068 | -167 | 3.6 | TTTTGTTAATAACATTAAAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: igaA | ||||
| Ortholog function: IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3398 | -288 | 3.6 | TTGTGCGATATCGGACACGCTT |
| -123 | 3.8 | TACTGTGATGTGCTTAATGATG | ||
| Salmonella typhimurium LT2 | STM3495 | -238 | 3.6 | TTATGTAACGTAATAAAAATTA |
| Citrobacter koseri ATCC BAA-895 | CKO_04821 | -290 | 3.9 | TTGTGCGATATACAGCACGGTT |
| -238 | 3.7 | TTATGTAACGTAGTAAAAATTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03769 | -282 | 3.8 | TTGTGCGATACGCAACACGCTT |
| Enterobacter sp. 638 | Ent638_3811 | -287 | 3.7 | TTGTGCGATATGACGCACGGTT |
| Yersinia pestis KIM | y3922 | -186 | 3.7 | TATTGTGACTGCGTTAGCTTTG |
|
Position: -83
Score: 3.7 Sequence: TTTTTTGATAACAATCGCTGTT
Locus tag: XBJ1_0071
|
||||
| XBJ1_0071 | -83 | 3.7 | TTTTTTGATAACAATCGCTGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pck | ||||
| Ortholog function: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3403 | -240 | 4.2 | GAATGCGATTCCACTCACAATA |
| -137 | 4 | TTTCGTGACAGGAATCACGGAG | ||
| Salmonella typhimurium LT2 | STM3500 | -241 | 4 | GAATGCGATTACAGTCACATTA |
| -107 | 3.9 | AATCGTGATTTTGTCCAGATAC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04825 | -107 | 3.9 | AATCGTGATTTTGTCCAGATAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03773 | -242 | 3.7 | GAAAGCGATTACATTCACATTT |
| -138 | 3.7 | CTTCGTGACAGGAGTCACCGTT | ||
| Enterobacter sp. 638 | Ent638_3816 | -241 | 4.1 | GTATGCGATTACATTCACATTA |
| Yersinia pestis KIM | y3918 | -130 | 4.2 | ATTCGTGTTCCATCTCTCATAA |
| -80 | 3.8 | ATATTTGATAGCTATCGCTGTT | ||
| Serratia proteamaculans 568 | Spro_4617 | -80 | 4.1 | ATATTTGATACCTATCGCGGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4106 | -81 | 4 | TTTTATGATTGCTATCGCGGTT |
| Edwardsiella tarda EIB202 | ETAE_3277 | -82 | 3.9 | TTTTTTGATGACTATCTCGGTT |
| Proteus mirabilis HI4320 | PMI3015 | -131 | 4 | ATTTGTGCATTAGTTCTCGTTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0100 | -86 | 3.8 | TTTTTTGATAACTATCGCTGTT |
|
Position: -116
Score: 4.2 Sequence: AGTTGTGATCAAAACAACACTA
Locus tag: XBJ1_0090
|
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| XBJ1_0090 | -116 | 4.2 | AGTTGTGATCAAAACAACACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uspA3 | ||||
| Ortholog function: Universal stress protein A | ||||
| Enterobacter sp. 638 | Ent638_3909 | -195 | 3.8 | AAAGTCGATCGGGTTCACGTTT |
| Yersinia pestis KIM | y3859 | -151 | 3.6 | ATTAGTGATCATTGTCAAAACC |
| Serratia proteamaculans 568 | Spro_4691 | -123 | 4 | CAGTGTGATCGCCTCAACATAT |
| Proteus mirabilis HI4320 | PMI3009 | -290 | 3.6 | AGTTGTTCGCTTTTTCAAAAAA |
| -113 | 3.8 | AGTTGTGATCAAGGCAACATCT | ||
|
Position: -172
Score: 4.3 Sequence: AAATGTGATCCAAAACTCAAAC
Locus tag: XBJ1_0098
|
||||
| XBJ1_0098 | -172 | 4.3 | AAATGTGATCCAAAACTCAAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: treB | ||||
| Ortholog function: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4240 | -101 | 3.8 | AATTGTGATCTTCGCTGCGTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_03571 | -156 | 3.8 | ATTTGTGATCTTCGCTGCGTTT |
| Enterobacter sp. 638 | Ent638_0439 | -106 | 4 | TATTGTGATCTTCACCCGATTT |
| Serratia proteamaculans 568 | Spro_0529 | -124 | 3.8 | TTTTGTGATCCTCGCCCCAAAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3288 | -127 | 4.3 | CAATGTGATCTTCAACCCATTT |
|
Position: -133
Score: 4.7 Sequence: TATTGTGATGTGTACTACAAAT
Position: -62
Score: 3.7 Sequence: TTATGTAAAATGATTCATTTTT
Locus tag: XBJ1_0127
|
||||
| XBJ1_0127 | -133 | 4.7 | TATTGTGATGTGTACTACAAAT | |
| -62 | 3.7 | TTATGTAAAATGATTCATTTTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: paaA | ||||
| Ortholog function: predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1388 | -97 | 4.3 | ATTTGTGATTTTACTTAACTAT |
| -76 | 3.6 | TTGTGTAACTTTCATAAAACAA | ||
| -45 | 3.6 | TGTTTTTAATTAATTCACGAAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01469 | -197 | 3.8 | CATTGTGATCGCGATGGCGTTA |
| -131 | 3.7 | TTTTGCGGAGATTATCACAAAA | ||
| Serratia proteamaculans 568 | Spro_3072 | -134 | 3.8 | ACCTGTGAGTAACATCGCAAAA |
| -63 | 3.8 | TTAGTTAACGTGATTCACATTT | ||
|
Position: -284
Score: 3.7 Sequence: AAAAATGAATCATTTTACATAA
Position: -213
Score: 4.3 Sequence: ATTTGTAGTACACATCACAATA
Position: -74
Score: 3.7 Sequence: TAATGGGATATATGATACATAA
Position: -20
Score: 3.7 Sequence: ATTTGTTAGGTGGAGAAAAAAT
Locus tag: XBJ1_0128
|
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| XBJ1_0128 | -284 | 3.7 | AAAAATGAATCATTTTACATAA | |
| -213 | 4.3 | ATTTGTAGTACACATCACAATA | ||
| -74 | 3.7 | TAATGGGATATATGATACATAA | ||
| -20 | 3.7 | ATTTGTTAGGTGGAGAAAAAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: paaN | ||||
| Ortholog function: Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase (EC 1.2.1.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1387 | -261 | 3.6 | TTTCGTGAATTAATTAAAAACA |
| -175 | 3.7 | AACTGTGACGGATTTCGCACCC | ||
| -109 | 3.8 | AGTTGCTATACAGATCGCATAG | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01468 | -246 | 3.3 | TTATGTGAATCACTTTGTTTAT |
| -177 | 4.4 | TTTTGTGATAATCTCCGCAAAA | ||
| Serratia proteamaculans 568 | Spro_3071 | -277 | 3.8 | AAATGTGAATCACGTTAACTAA |
| -206 | 4 | TTTTGCGATGTTACTCACAGGT | ||
|
Position: -40
Score: 3.6 Sequence: CTGTGCGATTAACTTCAACTTA
Locus tag: XBJ1_0141
|
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| XBJ1_0141 | -40 | 3.6 | CTGTGCGATTAACTTCAACTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpG | ||||
| Ortholog function: predicted intramembrane serine protease | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3424 | -95 | 4.7 | TAGAGTGATATGTATAACATTA |
| Salmonella typhimurium LT2 | STM3524 | -104 | 4.7 | TAGAGTGATATGTATAACATTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03790 | -107 | 4.3 | TGAAGTGATGGGTGTAACATAT |
| Enterobacter sp. 638 | Ent638_3833 | -257 | 3.8 | ATGTTCGATATCGCTCATAATA |
| -196 | 4.6 | TTGAGTGATAGAGATAACATAA | ||
| Erwinia amylovora ATCC 49946 | EAM_3263 | -134 | 3.9 | ATGCGTGATGCCGATAACGTCT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0196 | -102 | 3.6 | TAACGTATTACTGATAACAAAT |
|
Position: -129
Score: 3.9 Sequence: TATTTTGCGGAGTTTCGCATAA
Locus tag: XBJ1_0237
|
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| XBJ1_0237 | -129 | 3.9 | TATTTTGCGGAGTTTCGCATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yicG | ||||
| Ortholog function: Putative inner membrane protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3646 | -58 | 4.4 | AATCGTGACAATGCGCACAAAT |
| Salmonella typhimurium LT2 | STM3738 | -210 | 3.7 | TTAAATTATCTAAGTCAAAATA |
| -147 | 3.8 | TTTATTGATATTTATAATAAAT | ||
| -58 | 4.9 | AATCGTGATACAGCGCACAAAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_05103 | -58 | 4.7 | AATCGTGATATTACGCACAAAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03994 | -55 | 4.9 | AATCGTGATCCTGCGCACAAAT |
| Enterobacter sp. 638 | Ent638_0094 | -55 | 3.9 | AATCGTGATATGTTCTGCAAAA |
| Edwardsiella tarda EIB202 | ETAE_0032 | -180 | 3.8 | AAAACTAATCTATATCAAATAT |
|
Position: -142
Score: 3.7 Sequence: ATATGTGATTATGTTGACGTCA
Locus tag: XBJ1_0246
|
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| XBJ1_0246 | -142 | 3.7 | ATATGTGATTATGTTGACGTCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dppA | ||||
| Ortholog function: dipeptide ABC transporter, substrate-binding protein | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04994 | -121 | 3.8 | TTATGTGAACGGAATCCCCATC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03899 | -62 | 4 | ATATGCAAACAACATCACAATT |
| Yersinia pestis KIM | y3825 | -211 | 3.9 | AGATGTGAGCCATATAACCTCT |
| Serratia proteamaculans 568 | Spro_0138 | -271 | 3.8 | TTGTTTGCTGTTTCTCACAGTC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0300 | -223 | 3.7 | AAATGTGCGCATTGTCATGTTT |
|
Position: -95
Score: 5 Sequence: TAATTTGAGCCAGTTCACATTT
Locus tag: XBJ1_0374
|
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| XBJ1_0374 | -95 | 5 | TAATTTGAGCCAGTTCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: deaD | ||||
| Ortholog function: ATP-independent RNA helicase | ||||
| Salmonella typhimurium LT2 | STM3280.S | -154 | 3.9 | CTTTTTGATTGCCATCACCTTC |
| -99 | 4.4 | TACTTTGAGCCGGTTCACACTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04559 | -103 | 3.9 | CTTTTTGATTGCCATCACCTTC |
| -48 | 4.4 | TACTTTGAGCCGGTTCACACTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03570 | -154 | 3.8 | TTTTTTGCTTGCCATCACCTTC |
| -99 | 4.4 | TACTTTGAGCCGGTTCACACAT | ||
| Enterobacter sp. 638 | Ent638_3599 | -154 | 4.1 | TCTTATGATTGCCATCACCTTA |
| -99 | 4.4 | TACTTTGAGCCGGTTCACACTT | ||
| Erwinia amylovora ATCC 49946 | EAM_3065 | -99 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Yersinia pestis KIM | y0696 | -96 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Serratia proteamaculans 568 | Spro_0495 | -96 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0718 | -96 | 4.4 | CAATTTGAGCCGGTTCACACTT |
| Edwardsiella tarda EIB202 | ETAE_0411 | -96 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Proteus mirabilis HI4320 | PMI3424 | -80 | 5 | TAATTTGAGCCAGTTCACATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4523 | -95 | 5 | TAATTTGAGCCAGTTCACATTT |
|
Position: -185
Score: 3.9 Sequence: AACTGTGACATACCACAGATAA
Locus tag: XBJ1_0541
|
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| XBJ1_0541 | -185 | 3.9 | AACTGTGACATACCACAGATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpQ | ||||
| Ortholog function: glycerophosphoryl diester phosphodiesterase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2239 | -219 | 3.7 | TTGTTTGATTTCGCGCATATTC |
| -179 | 3.6 | AAACGTGATTTCATGCGTCATT | ||
| -129 | 4.6 | ATGTGTGCGGCAATTCACATTT | ||
| Salmonella typhimurium LT2 | STM2282 | -220 | 3.6 | ATGTTTGATTTCGCGCATAATC |
| -180 | 4.2 | AAACGTGATTTCGTGCGCCTTT | ||
| -131 | 5.2 | ATATGTGCTGTAATTCACATTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00538 | -221 | 3.6 | TTGTTTGATTTCGCGCATAATC |
| -181 | 4 | AAACGTGATTTCGTGCGCTTTT | ||
| -132 | 4.8 | ATCTGTGCTGTAATTCACATTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02645 | -218 | 3.8 | TTGTTTGATTTCGAGCATATTC |
| -178 | 4.6 | TTATGTGATTTCGTGCTCACAT | ||
| -128 | 4.5 | AATTGTGCGATGTTTCACAGTA | ||
| Serratia proteamaculans 568 | Spro_0198 | -249 | 4.5 | GAATGTGATCATAATCACGATT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4167 | -253 | 3.7 | ATGTTTGATAAAGAGCAAAAAC |
| -193 | 4.9 | AAGTGTGATTTGCATCACTAAA | ||
| Edwardsiella tarda EIB202 | ETAE_3117 | -200 | 3.7 | ATATGAGCGATCTCTCACAGTA |
| Proteus mirabilis HI4320 | PMI3590 | -291 | 3.6 | ATGTTTGATAATGAGCAAAAAC |
| -232 | 5.4 | ATATGTGATACTAATCACAAAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4120 | -250 | 4.9 | TATTGTGACAATTGTCACAATT |
|
Position: -240
Score: 4.8 Sequence: TATTGTGACGTAGGTCACTATA
Locus tag: XBJ1_0542
|
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| XBJ1_0542 | -240 | 4.8 | TATTGTGACGTAGGTCACTATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpT | ||||
| Ortholog function: glycerol-3-phosphate transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2240 | -219 | 3.7 | TTGTTTGATTTCGCGCATATTC |
| -179 | 3.6 | AAACGTGATTTCATGCGTCATT | ||
| -129 | 4.6 | ATGTGTGCGGCAATTCACATTT | ||
| Salmonella typhimurium LT2 | STM2283 | -220 | 3.6 | ATGTTTGATTTCGCGCATAATC |
| -180 | 4.2 | AAACGTGATTTCGTGCGCCTTT | ||
| -131 | 5.2 | ATATGTGCTGTAATTCACATTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00537 | -221 | 3.6 | TTGTTTGATTTCGCGCATAATC |
| -181 | 4 | AAACGTGATTTCGTGCGCTTTT | ||
| -132 | 4.8 | ATCTGTGCTGTAATTCACATTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02646 | -218 | 3.8 | TTGTTTGATTTCGAGCATATTC |
| -178 | 4.6 | TTATGTGATTTCGTGCTCACAT | ||
| -128 | 4.5 | AATTGTGCGATGTTTCACAGTA | ||
| Enterobacter sp. 638 | Ent638_2804 | -201 | 3.6 | TTGTTTGATTTCGAACATAATC |
| -161 | 3.8 | AAGCGTGATCTCATGCGCTTAT | ||
| -111 | 4 | ATCTGTGCGTTGATTCACAGTA | ||
| Erwinia amylovora ATCC 49946 | EAM_0195 | -240 | 3.7 | AAACGCGATGCGGTTAACGATG |
| -147 | 3.7 | ATTTGTGCCTCTCTTCACGGTC | ||
| Serratia proteamaculans 568 | Spro_0199 | -249 | 4.5 | GAATGTGATCATAATCACGATT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4166 | -253 | 3.7 | ATGTTTGATAAAGAGCAAAAAC |
| -193 | 4.9 | AAGTGTGATTTGCATCACTAAA | ||
| Edwardsiella tarda EIB202 | ETAE_3116 | -200 | 3.7 | ATATGAGCGATCTCTCACAGTA |
| Proteus mirabilis HI4320 | PMI3591 | -291 | 3.6 | ATGTTTGATAATGAGCAAAAAC |
| -232 | 5.4 | ATATGTGATACTAATCACAAAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4119 | -250 | 4.9 | TATTGTGACAATTGTCACAATT |
|
Position: -204
Score: 4 Sequence: TTTTGTGCCACGAGTCACAGTG
Locus tag: XBJ1_0778
|
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| XBJ1_0778 | -204 | 4 | TTTTGTGCCACGAGTCACAGTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompA | ||||
| Ortholog function: outer membrane protein A | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0957 | -188 | 4 | ATGCCTGACGGAGTTCACACTT |
| Salmonella typhimurium LT2 | STM1070 | -188 | 4.3 | ATGTCTGACGGAGTTCACACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02111 | -164 | 4 | ATGCCTGACGGAGTTCACACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00986 | -185 | 3.9 | ATGCCTGACAGAGTTCACACTT |
| Enterobacter sp. 638 | Ent638_1469 | -189 | 4 | ATGCCTGACGGAGTTCACACTT |
| Serratia proteamaculans 568 | Spro_1754 | -195 | 3.8 | TTTTTAGAGCTTTATCACATCA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1751 | -200 | 3.9 | TCTTATGACACAAATCACATCA |
| Edwardsiella tarda EIB202 | ETAE_1267 | -196 | 3.7 | TTTGGTGAGCATAATCACATCG |
|
Position: -82
Score: 4.1 Sequence: TATTGTGTAGTGTGTCTCATTT
Locus tag: XBJ1_0800
|
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| XBJ1_0800 | -82 | 4.1 | TATTGTGTAGTGTGTCTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aphA | ||||
| Ortholog function: acid phosphatase/phosphotransferase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4055 | -130 | 3.6 | CATCCTGCTTTTCATCACAAAA |
| -57 | 4 | TTTTGCAACAAATCTCACAATA | ||
| Salmonella typhimurium LT2 | STM4249 | -139 | 3.7 | TGTTGTGATCATCCTCTTTTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_03845 | -255 | 3.9 | TATTGTGAATGCGTGTACAGAA |
| -224 | 3.7 | GTGTGTGTGGTTTATCACACAT | ||
| Enterobacter sp. 638 | Ent638_0259 | -57 | 3.8 | TTTTTTGACCATTCGCTCAATT |
| Edwardsiella tarda EIB202 | ETAE_3469 | -150 | 5 | TTTTGTGATGAATGTCACGTAT |
| -98 | 3.7 | AACATAGATCATGATCACATTA | ||
| Proteus mirabilis HI4320 | PMI0729 | -148 | 4.3 | AAGTGTTAGATAGATCAAAAAA |
| -87 | 4.3 | TAACGTGCGCTATATCTCATTT | ||
| -34 | 4.3 | TTCTGTGATTAATATAAAAATT | ||
|
Position: -289
Score: 3.4 Sequence: TACTGAGAGTTATTTTAAAATT
Position: -279
Score: 3.2 Sequence: TATTTTAAAATTCCTTATATTT
Locus tag: XBJ1_0817
|
||||
| XBJ1_0817 | -289 | 3.4 | TACTGAGAGTTATTTTAAAATT | |
| -279 | 3.2 | TATTTTAAAATTCCTTATATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: serC | ||||
| Ortholog function: Phosphoserine aminotransferase (EC 2.6.1.52) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0907 | -155 | 4.8 | TTGTGTGATGCAAGCCACATTT |
| Salmonella typhimurium LT2 | STM0977 | -142 | 4.2 | TTGTGTGACGCATGCCGCATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02165 | -171 | 4.6 | TTGTGTGACGTAGCGCGCATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00935 | -145 | 3.7 | TTGTGTGACGGCGGCCGCGTTT |
| Enterobacter sp. 638 | Ent638_1427 | -119 | 4.4 | TTGTGTGACGGTGGACACATTT |
| Yersinia pestis KIM | y2784 | -39 | 3.3 | TATAACGATGGCAATCTCAGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2594 | -78 | 3.5 | AAGTATGACGGGTATAAAAATG |
| Proteus mirabilis HI4320 | PMI0711 | -119 | 3.5 | TATTTTTGTGTGCTACACATAA |
|
Position: -187
Score: 4 Sequence: TATTGTTATAAATTTTAAAAAA
Position: -88
Score: 4.9 Sequence: TAATATGATCCATATCAAATTT
Locus tag: XBJ1_0820
|
||||
| XBJ1_0820 | -187 | 4 | TATTGTTATAAATTTTAAAAAA | |
| -88 | 4.9 | TAATATGATCCATATCAAATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: focA | ||||
| Ortholog function: formate transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0904 | -156 | 3.6 | TATTTTTATTTGGATAATCAAA |
| -78 | 3.8 | AGATATGATCTATATCAATTTC | ||
| Salmonella typhimurium LT2 | STM0974 | -78 | 4.4 | AGATATGATCTATATCAAATTC |
| Citrobacter koseri ATCC BAA-895 | CKO_02167 | -198 | 3.6 | TATTTTTATTTGGATAATCAAA |
| -120 | 4.4 | AGATATGATCTATATCAAATTC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00932 | -121 | 3.8 | AGATATGATCTATATCAATTTC |
| Enterobacter sp. 638 | Ent638_1424 | -78 | 3.8 | AGATATGATCTATATCAATTTC |
| Yersinia pestis KIM | y2789 | -84 | 4 | CAATATGATCCATATCAATTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2596 | -79 | 4.5 | CAATATGATCCACATCAAATTT |
| Proteus mirabilis HI4320 | PMI0706 | -188 | 4 | TTTTTTGATAAAATTTAAAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1614 | -88 | 4.7 | AATTATGATCTATATCAAATTC |
|
Position: -127
Score: 4.7 Sequence: TGATGTTACATGGATCACAATT
Locus tag: XBJ1_0866
|
||||
| XBJ1_0866 | -127 | 4.7 | TGATGTTACATGGATCACAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hpaG | ||||
| Ortholog function: 4-hydroxyphenylacetate catabolism | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04789 | -125 | 4.4 | TTGTGTTAATCCGATCACAAAA |
| Serratia proteamaculans 568 | Spro_0625 | -123 | 5 | TTTTGTTATCACGATCACAAAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0990 | -159 | 3.7 | AATAATGATAAAAAACAAATTT |
| -129 | 4.9 | TATTGTTACTGAGATCACAATT | ||
|
Position: -163
Score: 4.3 Sequence: AAGTTTGATATAGATAACGATA
Position: -58
Score: 3.6 Sequence: TAGAATGAATTAGTTCATACTA
Position: 0
Score: 3.9 Sequence: ATGAGTGAGTTTTATAACAGTT
Locus tag: XBJ1_0899
|
||||
| XBJ1_0899 | -163 | 4.3 | AAGTTTGATATAGATAACGATA | |
| -58 | 3.6 | TAGAATGAATTAGTTCATACTA | ||
| 0 | 3.9 | ATGAGTGAGTTTTATAACAGTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: clpS | ||||
| Ortholog function: ATP-dependent Clp protease adaptor protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0881 | -164 | 4 | AAATTTGAAGCAGTTAACGCTA |
| Salmonella typhimurium LT2 | STM0944 | -164 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -104 | 3.6 | AGATGTTAGTTATCTATCAATT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02199 | -164 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -135 | 4.2 | TAATGTGACAGATGTCGCGGAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00914 | -167 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -77 | 4.3 | ATTTGTGATGAGCATAACCTCT | ||
| Enterobacter sp. 638 | Ent638_1398 | -161 | 3.9 | ATTTTTGAAGCAGTTAACGCTA |
| -132 | 3.8 | GAATGTGACAGATATCGCGGAT | ||
| Erwinia amylovora ATCC 49946 | EAM_1320 | -161 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -132 | 4.5 | TTTTGTGATAGAGGTCGCTATT | ||
| Serratia proteamaculans 568 | Spro_1673 | -176 | 3.6 | AAGTTTGAAGCAGGTAACGCTA |
| Edwardsiella tarda EIB202 | ETAE_2208 | -164 | 3.8 | AAGTTTGAGGCAGTTAACGCAA |
| -144 | 3.6 | AATTGTGCGGCAGTGCGCTTTT | ||
| Proteus mirabilis HI4320 | PMI0689 | -268 | 3.7 | TGTCTTTATTTACTTAACATTA |
| -148 | 4.1 | AACTTTGATGTAGCTAACGCTT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1593 | -170 | 4.3 | AAGTTTGATATAGATAACGATA |
|
Position: -182
Score: 4.6 Sequence: TATCGTTATCTATATCAAACTT
Position: 11
Score: 4 Sequence: TACTGTGAAATGGTTCAATAAT
Locus tag: XBJ1_0900
|
||||
| XBJ1_0900 | -182 | 4.6 | TATCGTTATCTATATCAAACTT | |
| 11 | 4 | TACTGTGAAATGGTTCAATAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cspD | ||||
| Ortholog function: cold shock-like protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0880 | -180 | 4 | TAGCGTTAACTGCTTCAAATTT |
| Salmonella typhimurium LT2 | STM0943 | -181 | 4 | TAGCGTTAACTGCTTCAAATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02200 | -210 | 3.9 | ATCCGCGACATCTGTCACATTA |
| -181 | 4 | TAGCGTTAACTGCTTCAAATTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00913 | -270 | 4.2 | AGAGGTTATGCTCATCACAAAT |
| -180 | 4 | TAGCGTTAACTGCTTCAAATTT | ||
| Enterobacter sp. 638 | Ent638_1397 | -209 | 3.8 | ATCCGCGATATCTGTCACATTC |
| -180 | 3.9 | TAGCGTTAACTGCTTCAAAAAT | ||
| Serratia proteamaculans 568 | Spro_1672 | -205 | 4 | TAGCGTTACCTGCTTCAAACTT |
| -49 | 3.9 | TTCAGTTATTCATCTCACCTAA | ||
| Proteus mirabilis HI4320 | PMI0688 | -163 | 3.8 | AAGCGTTAGCTACATCAAAGTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1592 | -194 | 4.6 | TATCGTTATCTATATCAAACTT |
|
Position: -302
Score: 4 Sequence: AATTGCGAGAGTGATCACGGTA
Position: -230
Score: 3.7 Sequence: TTTTTTGATTTCAACATCAAAA
Locus tag: XBJ1_0911
|
||||
| XBJ1_0911 | -302 | 4 | AATTGCGAGAGTGATCACGGTA | |
| -230 | 3.7 | TTTTTTGATTTCAACATCAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdaC | ||||
| Ortholog function: Serine transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2796 | -179 | 4.2 | ATTTGAGATCAAGATCACTGAT |
| Salmonella typhimurium LT2 | STM2970 | -176 | 4.2 | ATTTGAGATCGGGATCACTGAT |
| Citrobacter koseri ATCC BAA-895 | CKO_04152 | -176 | 4.1 | ATTTGGGATCGCGATCACTGAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03139 | -158 | 4.2 | ATTTGAGATCGCGATCACTGAT |
| Enterobacter sp. 638 | Ent638_3249 | -176 | 4.1 | ATTTGGGATCAGGATCACTGAT |
| Erwinia amylovora ATCC 49946 | EAM_1294 | -300 | 3.6 | ATTTGTTAAAAATCGCAAAAAA |
| -180 | 3.9 | AAATGTGATTCCGATCACCGGC | ||
| Yersinia pestis KIM | y2862 | -286 | 4.3 | AATTGAGATCACGATCACGGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3158 | -195 | 3.7 | TTCTGTGATCGCCTCAATATTA |
| Proteus mirabilis HI4320 | PMI0672 | -283 | 4.3 | ATTTGAGATGGTGATCACGGTA |
|
Position: -121
Score: 4.7 Sequence: ACATGTGATCTCATTAACAAAT
Position: -89
Score: 3.9 Sequence: AATTTTGTTGTATATGACATTA
Locus tag: XBJ1_0927
|
||||
| XBJ1_0927 | -121 | 4.7 | ACATGTGATCTCATTAACAAAT | |
| -89 | 3.9 | AATTTTGTTGTATATGACATTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gnd | ||||
| Ortholog function: hypothetical protein | ||||
| Enterobacter sp. 638 | Ent638_2642 | -116 | 4 | CAGTGTGACATAGATCAGCAAA |
| Yersinia pestis KIM | y2629 | -78 | 3.8 | AGTTGTGCTATCTATCGCACCA |
| -76 | 3.6 | TTGTGCTATCTATCGCACCAAT | ||
| Serratia proteamaculans 568 | Spro_1608 | -297 | 3.7 | ATGCTTGAAGTGGCTCTCACTT |
| -72 | 4.2 | ACATGTGTGCCACATCACAAAA | ||
| Proteus mirabilis HI4320 | PMI0655 | -71 | 4.7 | CTATGTGATCAGGTTAACAAAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1560 | -74 | 4.4 | ACATGTGATCACATTAACAAAT |
|
Position: -227
Score: 4 Sequence: TAATGTCATATACAACAAAATT
Position: -195
Score: 4 Sequence: ATTTGTTAATGAGATCACATGT
Locus tag: XBJ1_0928
|
||||
| XBJ1_0928 | -227 | 4 | TAATGTCATATACAACAAAATT | |
| -195 | 4 | ATTTGTTAATGAGATCACATGT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yegH | ||||
| Ortholog function: putative membrane protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2063 | -43 | 4.6 | AATTGTGACATTTGTCATACAA |
| Salmonella typhimurium LT2 | STM2119 | -42 | 4.5 | AATTGTGACAATTGTCATATTA |
| Citrobacter koseri ATCC BAA-895 | CKO_00719 | -42 | 4.5 | AATTGTGACAACTGTCATATAA |
| Enterobacter sp. 638 | Ent638_2677 | -42 | 4.4 | AAGTGTGACAAATGTCATATAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1559 | -193 | 3.9 | ATTTGTTAATGTGATCACATGT |
|
Position: -72
Score: 5.2 Sequence: TAATGTGATGTATGGCACATTT
Locus tag: XBJ1_0936
|
||||
| XBJ1_0936 | -72 | 5.2 | TAATGTGATGTATGGCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yohJ | ||||
| Ortholog function: LrgA family protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2141 | -68 | 4.9 | TAATGTGATCGGTAGCACGTTT |
| Salmonella typhimurium LT2 | STM2181 | -68 | 4.6 | TGATGTGATCGGTAGCACGTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_00648 | -68 | 4.6 | TGATGTGATCGGTAGCACGTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02582 | -68 | 5 | TGATGTGATCGGTAGCACATTT |
| Enterobacter sp. 638 | Ent638_2744 | -68 | 4.7 | TGATGTGATCCGTAGCACGTTT |
| Yersinia pestis KIM | y2654 | -32 | 4.7 | TAGTGTGATGGGTAGCACAGAA |
| Serratia proteamaculans 568 | Spro_1570 | -62 | 4.3 | ATTTGTGGCGGAGGTCACAGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2828 | -69 | 4.5 | ATTCGTGATCTGTGGCACGTAA |
| Edwardsiella tarda EIB202 | ETAE_1164 | -68 | 4.9 | TGATGTGATCAGTAGCACATTT |
| Proteus mirabilis HI4320 | PMI0645 | -71 | 5.2 | TATTGTGATCCATAGCACACTT |
|
Position: -127
Score: 4.4 Sequence: AAATTTGATATAAGTCACTAAA
Locus tag: XBJ1_0939
|
||||
| XBJ1_0939 | -127 | 4.4 | AAATTTGATATAAGTCACTAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cdd | ||||
| Ortholog function: cytidine deaminase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2143 | -128 | 4.3 | ATTTGCGATGCGTCGCGCATTT |
| -78 | 5.1 | TAATGAGATTCAGATCACATAT | ||
| Salmonella typhimurium LT2 | STM2183 | -128 | 4.2 | ATTTGCGATACGTCGCGCATTT |
| -78 | 4.8 | CAATGAGATTTAGATCACATAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00646 | -128 | 4.3 | ATTTGCGATGCGTCGCGCATTT |
| -78 | 4.8 | CAATGAGATTTGGATCACATAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02584 | -78 | 4.4 | GAATGAGATATTCATCACATAT |
| Enterobacter sp. 638 | Ent638_2746 | -127 | 4.2 | ATTTGCGATGCGTCGCGCAATT |
| -77 | 4.9 | TAATGAGAACTGGATCACATAT | ||
| Erwinia amylovora ATCC 49946 | EAM_2202 | -124 | 3.9 | ACTTGCGATAAGTCTCTCATTT |
| -104 | 4.1 | TTTGGTGATGCATTTCATTTAT | ||
| -74 | 4.7 | TAGAGCGATTTAGATCACATAT | ||
| Yersinia pestis KIM | y2657 | -75 | 5 | TAATGAGATATAAATCACAATT |
| Serratia proteamaculans 568 | Spro_1568 | -127 | 4.1 | ACTTGCGATACATCTCGCAATT |
| -77 | 4.5 | TAAAGAGATTTACATCACACTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2830 | -130 | 4.6 | AATTGAGATACATCTCGCATTT |
| -79 | 4.5 | TAAAGAGATTCCGATCACAATT | ||
| Edwardsiella tarda EIB202 | ETAE_1162 | -76 | 4.9 | AAAAGTGATTATTATCACAAAT |
| Proteus mirabilis HI4320 | PMI0643 | -132 | 4.4 | ATTTGAGATGTATCTCCCAATT |
| -82 | 5.1 | AAATATGATTTTAATCACATAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1547 | -75 | 4.7 | CTATATGATATTTATCACATTA |
|
Position: 26
Score: 3.5 Sequence: TAGTGTGCGTGGTTTCGCTATT
Locus tag: XBJ1_0943
|
||||
| XBJ1_0943 | 26 | 3.5 | TAGTGTGCGTGGTTTCGCTATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yeiB | ||||
| Ortholog function: conserved inner membrane protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2152 | -101 | 3.8 | TTATGTGCGCCGCCTCACGCAC |
| Salmonella typhimurium LT2 | STM2192 | -101 | 4 | TTATGTGCGCTACCTCACGCAC |
| Citrobacter koseri ATCC BAA-895 | CKO_00639 | -98 | 3.8 | TTATGTGCGCCGCCTCACGCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02590 | -84 | 3.5 | TTCTGTGCGCCACCTCACGCAC |
| Enterobacter sp. 638 | Ent638_2752 | -84 | 3.9 | TTATGTGCGCCACCTCACGCAC |
| Serratia proteamaculans 568 | Spro_1561 | -121 | 4.3 | AATCTTGACCGGGTTCACGTTA |
| Proteus mirabilis HI4320 | PMI0640 | -86 | 4.9 | TAATGTGATTCAGCTCATCTAA |
|
Position: -23
Score: 3.8 Sequence: CTTTGTAACAGGATACACATAA
Locus tag: XBJ1_0970
|
||||
| XBJ1_0970 | -23 | 3.8 | CTTTGTAACAGGATACACATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybiH | ||||
| Ortholog function: putative transcriptional regulator | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0796 | -123 | 4.5 | TTTTGTGACGCAGCGCATAAAT |
| Salmonella typhimurium LT2 | STM0819 | -124 | 4.7 | TTTTGTGATGCGGCGCATAAAT |
| Citrobacter koseri ATCC BAA-895 | CKO_02331 | -124 | 4.5 | TTTTGTGACATACCGCATAAAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00824 | -224 | 3.6 | AAATGAAACGGTATTCAAAAAA |
| -118 | 4.7 | AATTGTTAAGCCCATCACAAAT | ||
| Enterobacter sp. 638 | Ent638_1287 | -126 | 4.4 | TTTTGTGACACGGCGCATAAAA |
| Serratia proteamaculans 568 | Spro_1330 | -146 | 4.6 | TTAAGTGACGCAGAGCACAATA |
| Proteus mirabilis HI4320 | PMI0619 | -160 | 3.6 | AATTTTTAAATAAATCATGTTT |
|
Position: -127
Score: 4 Sequence: ATATCTGATTTACTTAATAATT
Locus tag: XBJ1_1053
|
||||
| XBJ1_1053 | -127 | 4 | ATATCTGATTTACTTAATAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cydA | ||||
| Ortholog function: cytochrome d terminal oxidase, polypeptide subunit I | ||||
| Proteus mirabilis HI4320 | PMI0573 | -247 | 3.8 | AAATATGCTGTTACTAACCTAA |
|
Position: -303
Score: 3.9 Sequence: ATGTTTAATCCTTGTCAAATAA
Position: -254
Score: 4.3 Sequence: AAGCGTGATCTTTCTCACTGTT
Locus tag: XBJ1_1061
|
||||
| XBJ1_1061 | -303 | 3.9 | ATGTTTAATCCTTGTCAAATAA | |
| -254 | 4.3 | AAGCGTGATCTTTCTCACTGTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdhC | ||||
| Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit | ||||
| Enterobacter sp. 638 | Ent638_1222 | -295 | 4.2 | TATCGTGACTGTGATCACTGTT |
| Erwinia amylovora ATCC 49946 | EAM_1168 | -249 | 4.4 | AAGTGTGATTTTTGTCACTGTT |
| -190 | 3.6 | TAATGAGATTGTGATCCACTTA | ||
| Yersinia pestis KIM | y3071 | -254 | 4.5 | AATCGTGATCCTAATCACTGTT |
| Serratia proteamaculans 568 | Spro_1263 | -253 | 4.3 | ATCCGTGATCTAAATCACTGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1357 | -265 | 4.7 | ATTCGTGATCTAAATCACTGTT |
| Edwardsiella tarda EIB202 | ETAE_2588 | -261 | 3.7 | ATGCGTGACCGTTGTCACTGTT |
| Proteus mirabilis HI4320 | PMI0565 | -264 | 4.3 | AAAAGTGATCCCTCTCACTGTT |
|
Position: -265
Score: 3.7 Sequence: AATTGTTATTTGAGCAAAATTT
Locus tag: XBJ1_1343
|
||||
| XBJ1_1343 | -265 | 3.7 | AATTGTTATTTGAGCAAAATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: prpR | ||||
| Ortholog function: Propionate catabolism operon regulatory protein PrpR | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0330 | -107 | 3.7 | ATATGCGTTTCAGTTAACGTTT |
| Salmonella typhimurium LT2 | STM0367 | -89 | 3.5 | TTTCATGAAACGAATCACCCTG |
| Citrobacter koseri ATCC BAA-895 | CKO_02831 | -179 | 3.4 | AATTTTGTTTTTTCTTATAATT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3543 | -225 | 4 | ATATATGATTGTTTTTAAATTA |
|
Position: -204
Score: 4 Sequence: TGATGTAATCTTTATTAAATTA
Locus tag: XBJ1_1455
|
||||
| XBJ1_1455 | -204 | 4 | TGATGTAATCTTTATTAAATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dcuA | ||||
| Ortholog function: anaerobic C-4-dicarboxylate symporter | ||||
| Salmonella typhimurium LT2 | STM4325 | -209 | 4.2 | AGCGGTGACCTATTTCACAAAA |
| -159 | 4.2 | TTAAGTGATCCAGATTACGGTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03697 | -54 | 4.2 | AGCGGTGACCTATTTCACAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04528 | -204 | 3.9 | AGCGGTGACCCATTTCACAGAT |
| -154 | 3.8 | ATAAGTGATCAAGCTTACTGAT | ||
| Enterobacter sp. 638 | Ent638_0325 | -205 | 4.1 | AGCGGTGATTCATTTCACAGAT |
| Erwinia amylovora ATCC 49946 | EAM_0415 | -228 | 4.2 | CAATGTGACCTGGAACAGATAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0620 | -272 | 4 | ACTCGTGACTACAATCACAGTT |
|
Position: -131
Score: 4.4 Sequence: TTATGGGATAAGTATCAAATTA
Locus tag: XBJ1_1600
|
||||
| XBJ1_1600 | -131 | 4.4 | TTATGGGATAAGTATCAAATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fsr | ||||
| Ortholog function: fosmidomycin resistance protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0479 | -65 | 3.7 | TAGTCTGGTAATAATCACAAAT |
| Salmonella typhimurium LT2 | STM0493 | -100 | 3.8 | AATTGAGACTTCCTTCAAACAC |
| Citrobacter koseri ATCC BAA-895 | CKO_02670 | -102 | 3.8 | AATTGAGACTTCCTTCAAACAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00460 | -197 | 3.8 | AATTGCGACTTCCTTCAAACCT |
| Enterobacter sp. 638 | Ent638_0958 | -92 | 4 | AATTGCGACTTTCCTCAAATCT |
| Serratia proteamaculans 568 | Spro_1146 | -100 | 4.7 | TTTTGCGATGTGCGTCAAATTA |
|
Position: -220
Score: 3.8 Sequence: AATAGTGAGTTAACTCAAGAAG
Position: -23
Score: 3.5 Sequence: ATTTGTTACGATAGTAAAACTA
Locus tag: XBJ1_1634
|
||||
| XBJ1_1634 | -220 | 3.8 | AATAGTGAGTTAACTCAAGAAG | |
| -23 | 3.5 | ATTTGTTACGATAGTAAAACTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hupB | ||||
| Ortholog function: HU, DNA-binding transcriptional regulator, beta subunit | ||||
| Proteus mirabilis HI4320 | PMI0118 | -216 | 4.9 | AATCGTGATGTGAATCATAATA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3866 | -222 | 3.5 | AATAGTGAATTTTTTCAATAAG |
|
Position: -214
Score: 4.6 Sequence: ACATGTGATCCCTCTAACATAA
Locus tag: XBJ1_1646
|
||||
| XBJ1_1646 | -214 | 4.6 | ACATGTGATCCCTCTAACATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyoA | ||||
| Ortholog function: cytochrome o ubiquinol oxidase subunit II | ||||
| Yersinia pestis KIM | y1021 | -137 | 4.5 | ATCTGTGACCCCCTTAACATAA |
| Serratia proteamaculans 568 | Spro_1090 | -135 | 4.2 | ATCTGTGACCCCCTTAACAGAA |
| Proteus mirabilis HI4320 | PMI0108 | -194 | 3.6 | AAATTATAGTTAATTCACAATA |
| -147 | 3.6 | TTAATTACTTGTGATCACATTA | ||
| -141 | 4.3 | ACTTGTGATCACATTAACACAA | ||
|
Position: -54
Score: 3.7 Sequence: TGTCATGACTGTCATAACATTA
Locus tag: XBJ1_1731
|
||||
| XBJ1_1731 | -54 | 3.7 | TGTCATGACTGTCATAACATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nhaA | ||||
| Ortholog function: Na+/H+ antiporter NhaA type | ||||
| Salmonella typhimurium LT2 | STM0039 | -97 | 3.7 | AAACGAGCTATTCATCATATAT |
| Yersinia pestis KIM | y3704 | -147 | 4.1 | AAATGTGATATGCGTTATCAAT |
| Serratia proteamaculans 568 | Spro_0694 | -120 | 4.7 | AAGTGTGATATAAATCGCTTAT |
| Proteus mirabilis HI4320 | PMI0011 | -110 | 3.9 | ATAAGCGATTGAGATCGAAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0587 | -122 | 4.4 | TATTGAGATGTAGATCATCAAT |
|
Position: -82
Score: 3.3 Sequence: TATTTTTATCTGTTTTAAAGTC
Locus tag: XBJ1_1744
|
||||
| XBJ1_1744 | -82 | 3.3 | TATTTTTATCTGTTTTAAAGTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: proP | ||||
| Ortholog function: L-Proline/Glycine betaine transporter ProP | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03376 | -115 | 3.7 | TTCTGTGACATAAATTACGCAG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00010 | -105 | 3.2 | TGATATAACCTGCATCGCTAAT |
|
Position: -86
Score: 3.4 Sequence: AATTTTTAAGTGGATTACTATA
Locus tag: XBJ1_1757
|
||||
| XBJ1_1757 | -86 | 3.4 | AATTTTTAAGTGGATTACTATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aroA | ||||
| Ortholog function: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0908 | -155 | 4.8 | TTGTGTGATGCAAGCCACATTT |
| Salmonella typhimurium LT2 | STM0978 | -142 | 4.2 | TTGTGTGACGCATGCCGCATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02164 | -171 | 4.6 | TTGTGTGACGTAGCGCGCATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00936 | -145 | 3.7 | TTGTGTGACGGCGGCCGCGTTT |
| Enterobacter sp. 638 | Ent638_1428 | -119 | 4.4 | TTGTGTGACGGTGGACACATTT |
| Yersinia pestis KIM | y2783 | -39 | 3.3 | TATAACGATGGCAATCTCAGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2593 | -78 | 3.5 | AAGTATGACGGGTATAAAAATG |
| Edwardsiella tarda EIB202 | ETAE_2177 | -104 | 3.8 | TATAGTGACAGCGCTCAATAAA |
|
Position: -226
Score: 3.3 Sequence: ATTTGTGACTGTATAGTCATAA
Position: -51
Score: 3.2 Sequence: ATCCGTGATTATATAAATATTT
Position: -4
Score: 3.2 Sequence: AAATATGAGCAAGGTTACTGTT
Locus tag: XBJ1_1759
|
||||
| XBJ1_1759 | -226 | 3.3 | ATTTGTGACTGTATAGTCATAA | |
| -51 | 3.2 | ATCCGTGATTATATAAATATTT | ||
| -4 | 3.2 | AAATATGAGCAAGGTTACTGTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aroA | ||||
| Ortholog function: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0908 | -155 | 4.8 | TTGTGTGATGCAAGCCACATTT |
| Salmonella typhimurium LT2 | STM0978 | -142 | 4.2 | TTGTGTGACGCATGCCGCATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02164 | -171 | 4.6 | TTGTGTGACGTAGCGCGCATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00936 | -145 | 3.7 | TTGTGTGACGGCGGCCGCGTTT |
| Enterobacter sp. 638 | Ent638_1428 | -119 | 4.4 | TTGTGTGACGGTGGACACATTT |
| Yersinia pestis KIM | y2783 | -39 | 3.3 | TATAACGATGGCAATCTCAGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2593 | -78 | 3.5 | AAGTATGACGGGTATAAAAATG |
| Edwardsiella tarda EIB202 | ETAE_2177 | -104 | 3.8 | TATAGTGACAGCGCTCAATAAA |
|
Position: -341
Score: 5.2 Sequence: TTTTGTGATGCATGTCACATAG
Locus tag: XBJ1_1917
|
||||
| XBJ1_1917 | -341 | 5.2 | TTTTGTGATGCATGTCACATAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: flhD | ||||
| Ortholog function: DNA-binding transcriptional dual regulator with FlhC | ||||
| Proteus mirabilis HI4320 | PMI1672 | -158 | 3.6 | TGAAATGATCGTAATCAAGTAA |
|
Position: -298
Score: 4 Sequence: AAATGTGACTTAGCGAGCGTTT
Locus tag: XBJ1_1999
|
||||
| XBJ1_1999 | -298 | 4 | AAATGTGACTTAGCGAGCGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: putP | ||||
| Ortholog function: Proline/sodium symporter PutP (TC 2.A.21.2.1) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1015 | -207 | 3.6 | AAATGTGAGAGAGTGCAACCTG |
| Salmonella typhimurium LT2 | STM1125 | -204 | 3.6 | AAATGTGAGAGAGTGCAACCTG |
| Citrobacter koseri ATCC BAA-895 | CKO_02041 | -80 | 3.6 | AAATGTGAGAGAGTGCAACCTG |
| Enterobacter sp. 638 | Ent638_1542 | -249 | 3.7 | TTTTATGCGGCACTTAACACTT |
| Serratia proteamaculans 568 | Spro_2930 | -211 | 3.9 | AAATGTGACGCAGGGTAAACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4218 | -130 | 3.7 | TTGTGCAACCTTGTTAACAAAT |
| Proteus mirabilis HI4320 | PMI1615 | -220 | 3.8 | TAGTGTGAAGTTACATACAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1958 | -243 | 4.4 | AAATGTGATTCAGTAAACGTTT |
|
Position: -129
Score: 3.9 Sequence: ACTTGTGATCGCCGCCGCAATA
Locus tag: XBJ1_2196
|
||||
| XBJ1_2196 | -129 | 3.9 | ACTTGTGATCGCCGCCGCAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ychH | ||||
| Ortholog function: membrane protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1205 | -105 | 4.5 | AATTGTGATCACGCCCGCACAT |
| Salmonella typhimurium LT2 | STM1782 | -105 | 4.4 | ATTTGTGATCGCACCCGCACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_01260 | -104 | 4.1 | AATTGTGATCGCCCACGCACTC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02241 | -100 | 4.1 | TAATGTGATCGTGGACGCACTC |
| Enterobacter sp. 638 | Ent638_2343 | -119 | 3.7 | TGTTGTGACGAGAGTCATTAAT |
| -101 | 4 | TAATGTGATCATTCACGCAACT | ||
| Erwinia amylovora ATCC 49946 | EAM_1581 | -97 | 3.9 | AAATGTGATCGCTGACTCATCA |
| Yersinia pestis KIM | y2296 | -145 | 3.9 | AGTTGTGATCGCTACCGCAACA |
| Serratia proteamaculans 568 | Spro_1985 | -117 | 4.2 | ATTTGTGATCGCCTACGCAATC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2185 | -275 | 3.6 | TAGCGTGATTATGAGAACGCTA |
| -117 | 3.8 | ATCTGTGATCCCTCCCGCAATC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2065 | -189 | 4.1 | AGTTGTGATCGTGTCCGCAATG |
|
Position: -153
Score: 3.6 Sequence: AAATTAGACACTTGTCATATTT
Locus tag: XBJ1_2232
|
||||
| XBJ1_2232 | -153 | 3.6 | AAATTAGACACTTGTCATATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hexR | ||||
| Ortholog function: Phosphogluconate repressor HexR, RpiR family | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1853 | -151 | 3.9 | AAATCTGACACTGATCATGTTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02368 | -134 | 3.6 | AAATACGACCCTGATCATGTAA |
| Yersinia pestis KIM | y2245 | -152 | 3.7 | AAATTAGACACAGGTCATATTA |
| Proteus mirabilis HI4320 | PMI1156 | -58 | 3.6 | AACCGTTATAGATTTCTCCTTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2121 | -132 | 3.7 | TTTTATGAAAAACATTAAATTA |
|
Position: -263
Score: 3.7 Sequence: AAATATGACAAGTGTCTAATTT
Locus tag: XBJ1_2233
|
||||
| XBJ1_2233 | -263 | 3.7 | AAATATGACAAGTGTCTAATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: zwf | ||||
| Ortholog function: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1852 | -208 | 3.9 | TAACATGATCAGTGTCAGATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02367 | -225 | 3.8 | TTACATGATCAGGGTCGTATTT |
| Yersinia pestis KIM | y2244 | -231 | 4.1 | TAATATGACCTGTGTCTAATTT |
| Proteus mirabilis HI4320 | PMI1157 | -225 | 3.7 | AAGTATGACCTGTGTCTAACTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2122 | -234 | 4.2 | TAATTTAATGTTTTTCATAAAA |
|
Position: -109
Score: 3.5 Sequence: GTTCGTGTGAACGATCACATTT
Locus tag: XBJ1_2321
|
||||
| XBJ1_2321 | -109 | 3.5 | GTTCGTGTGAACGATCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mlc | ||||
| Ortholog function: ROK family transcriptional regulatory protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1594 | -108 | 4.1 | AAATGTGCTGTTAATCACATGC |
| Salmonella typhimurium LT2 | STM1488 | -65 | 3.8 | AGTATTGAAGTGTTTCACCATA |
| Citrobacter koseri ATCC BAA-895 | CKO_01593 | -107 | 3.6 | AAaTGTGcagTAaATCACAcgg |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01574 | -104 | 3.8 | AAATGTGCGGTAAATCACAAGG |
| Enterobacter sp. 638 | Ent638_1919 | -107 | 3.8 | AAATGTGCGGTAAATCACAAGG |
| Erwinia amylovora ATCC 49946 | EAM_1710 | -143 | 4.9 | TTATGTGCTGTAAATCACATTC |
| Yersinia pestis KIM | y2110 | -146 | 4.8 | TTATGTGCAGCAAATCACATAA |
| Serratia proteamaculans 568 | Spro_2283 | -111 | 4.8 | ATTTGTGCAGCAAATCACATAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2258 | -226 | 4.4 | ATATGCGCGCTAAATCACATAA |
| Edwardsiella tarda EIB202 | ETAE_1713 | -113 | 4.8 | ATTTGTGCACTTAATCACATAA |
| Proteus mirabilis HI4320 | PMI1292 | -126 | 4.7 | ATATGTGCTTTCCATCACGATT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2226 | -119 | 4.8 | TTTCGTGCTGAATATCACATAT |
|
Position: -236
Score: 4.8 Sequence: TTTAGTGATTTAGATCACTAAA
Locus tag: XBJ1_2430
|
||||
| XBJ1_2430 | -236 | 4.8 | TTTAGTGATTTAGATCACTAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhE | ||||
| Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1241 | -241 | 5 | AAATTTGATTTGGATCACGTAA |
| Salmonella typhimurium LT2 | STM1749 | -242 | 4.9 | AATCTTGATTTAGATCACACAA |
| Citrobacter koseri ATCC BAA-895 | CKO_01318 | -242 | 4.9 | AAATTTGATCTGGATCACGCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02199 | -237 | 4.7 | ATACTTGATCTAAATCACGTAA |
| Enterobacter sp. 638 | Ent638_2304 | -253 | 4.1 | TAAATTGATTCAGATCATGTTT |
| Erwinia amylovora ATCC 49946 | EAM_1900 | -223 | 3.9 | ATTGATGATCTGCATCATCTTT |
| Yersinia pestis KIM | y2023 | -286 | 5.3 | TTTTGTGATTTAAATCACGAAA |
| Serratia proteamaculans 568 | Spro_2704 | -278 | 5.1 | TTTTATGATTTAAATCACAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2326 | -315 | 4.5 | AAGTTCGATGTTGATCACAAAA |
| Edwardsiella tarda EIB202 | ETAE_1508 | -265 | 5 | TTTCGTGACCTTAATCACAAAA |
| Proteus mirabilis HI4320 | PMI1486 | -246 | 5.4 | TATTGTGATGTAGATCACTTTA |
| -187 | 3.7 | AAAGGAGATCTTTTTAAAATAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2496 | -237 | 3.7 | TATTTTTATTAGATTAAAAATT |
| -138 | 4.6 | TTATGTGATTAAGATCAATATA | ||
|
Position: -161
Score: 4.6 Sequence: AAATGTGATGATCATCATGAAA
Locus tag: XBJ1_2431
|
||||
| XBJ1_2431 | -161 | 4.6 | AAATGTGATGATCATCATGAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tdk | ||||
| Ortholog function: Thymidine kinase (EC 2.7.1.21) | ||||
| Yersinia pestis KIM | y2145 | -208 | 4.9 | TATTGTGAGATTGCTCATATAA |
| Serratia proteamaculans 568 | Spro_2705 | -203 | 4.3 | AAATGTGATGTCAGACAGAAAT |
| Edwardsiella tarda EIB202 | ETAE_1506 | -206 | 4 | AACTGTTAGGTCGATCACTTAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2497 | -157 | 4.1 | TGGTGTGATGGTGGTCATGAAT |
|
Position: -138
Score: 5.1 Sequence: ATATGTGAGACTTATCACAATT
Locus tag: XBJ1_2451
|
||||
| XBJ1_2451 | -138 | 5.1 | ATATGTGAGACTTATCACAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: msrB | ||||
| Ortholog function: methionine sulfoxide reductase B | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1778 | -137 | 5.2 | AAATGTGATTTTCATCACGATT |
| Salmonella typhimurium LT2 | STM1291 | -107 | 4.7 | TAATGTGACATCAGTCACGATT |
| Citrobacter koseri ATCC BAA-895 | CKO_01799 | -107 | 4.9 | AAACGTGATTCCGATCACGATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01198 | -135 | 5.1 | AAACGTGATTTAAGTCACAATT |
| Enterobacter sp. 638 | Ent638_1676 | -137 | 5.2 | ATATGTGAGAAAGATCACAATT |
| Erwinia amylovora ATCC 49946 | EAM_1930 | -137 | 5.2 | AATGGTGATCTGCATCACAATT |
| Yersinia pestis KIM | y2164 | -85 | 5.1 | ATTTGCGATTTTTATCACATTT |
| Serratia proteamaculans 568 | Spro_2727 | -143 | 5.7 | ATATGTGATCGGTATCACATAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2343 | -135 | 5.6 | TTATGTGATACACATCACAATT |
| Edwardsiella tarda EIB202 | ETAE_1484 | -91 | 4.9 | GTTTGTGATGCTCATCACAAAA |
| Proteus mirabilis HI4320 | PMI1503 | -137 | 5.3 | TTATGTGAAATGTATCACATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2557 | -267 | 4.6 | ATATGCGAGTCACATCACAATA |
|
Position: -224
Score: 5.4 Sequence: AATTGTGATAAGTCTCACATAT
Locus tag: XBJ1_2452
|
||||
| XBJ1_2452 | -224 | 5.4 | AATTGTGATAAGTCTCACATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gapA | ||||
| Ortholog function: glyceraldehyde-3-phosphate dehydrogenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1779 | -226 | 5.3 | AATCGTGATGAAAATCACATTT |
| Salmonella typhimurium LT2 | STM1290 | -226 | 4.8 | AATCGTGACTGATGTCACATTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01800 | -226 | 5 | AATCGTGATCGGAATCACGTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01197 | -225 | 5.2 | AATTGTGACTTAAATCACGTTT |
| Enterobacter sp. 638 | Ent638_1675 | -225 | 5.7 | AATTGTGATCTTTCTCACATAT |
| Erwinia amylovora ATCC 49946 | EAM_1931 | -215 | 5.4 | AATTGTGATGCAGATCACCATT |
| Yersinia pestis KIM | y2165 | -218 | 5.1 | AAATGTGATAAAAATCGCAAAT |
| Serratia proteamaculans 568 | Spro_2728 | -227 | 5.6 | ATATGTGATACCGATCACATAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2344 | -235 | 5.8 | AATTGTGATGTGTATCACATAA |
| Edwardsiella tarda EIB202 | ETAE_1483 | -227 | 5.1 | TTTTGTGATGAGCATCACAAAC |
| Proteus mirabilis HI4320 | PMI1504 | -226 | 5.6 | AAATGTGATACATTTCACATAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2558 | -224 | 5.4 | TATTGTGATGTGACTCGCATAT |
|
Position: -117
Score: 4.5 Sequence: AAATGTGATTCAAATCCTAAAA
Locus tag: XBJ1_2456
|
||||
| XBJ1_2456 | -117 | 4.5 | AAATGTGATTCAAATCCTAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dadA | ||||
| Ortholog function: D-amino acid dehydrogenase small subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1189 | -116 | 4.7 | AGATGTGAGCCAGCTCACCATA |
| Salmonella typhimurium LT2 | STM1803 | -107 | 4.6 | ATATGTGAAGCACGTCACCATA |
| Citrobacter koseri ATCC BAA-895 | CKO_01193 | -107 | 4.5 | AGATGTGAGGTGCGTCACCATA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02309 | -106 | 4.1 | TGCTGTGAGTTAAGTCACCATA |
| Enterobacter sp. 638 | Ent638_2363 | -107 | 4.3 | AGGTGTGAGGTAAGTCACCATA |
| Serratia proteamaculans 568 | Spro_2746 | -113 | 4.6 | AATTGTGAATGTTGTCACGTTT |
| Proteus mirabilis HI4320 | PMI1509 | -121 | 4.7 | AAATGTGATTTGACTCTAAAAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2561 | -114 | 5.4 | AATTGTGATCTAAATCATAAAT |
|
Position: -120
Score: 4.2 Sequence: TTTTATGATTCCTTTCACTCTT
Locus tag: XBJ1_2457
|
||||
| XBJ1_2457 | -120 | 4.2 | TTTTATGATTCCTTTCACTCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadR | ||||
| Ortholog function: fatty acid metabolism regulator | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1187 | -21 | 3.9 | CTGTGTTATGGAAATCTCACTA |
| Salmonella typhimurium LT2 | STM1805 | -21 | 3.8 | CTGTGTAATGGAAATCTCACTA |
| Enterobacter sp. 638 | Ent638_2365 | -21 | 3.8 | CTGTGTAATGGAAATCTCACTA |
| Yersinia pestis KIM | y2177 | -113 | 3.8 | CTTTATGACTGCTTTCACCATT |
| Proteus mirabilis HI4320 | PMI1510 | -111 | 4.4 | TTTTATGATGCCATTCACTATT |
| -84 | 3.8 | ATGGTTGAGCTATATCAAAATT | ||
|
Position: -267
Score: 3.6 Sequence: TATTTTGATAATTATCTTAACA
Locus tag: XBJ1_2493
|
||||
| XBJ1_2493 | -267 | 3.6 | TATTTTGATAATTATCTTAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ydhD | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1654 | -132 | 3.6 | ATATTTGAAATGCAACAAATAG |
| Enterobacter sp. 638 | Ent638_1793 | -186 | 3.6 | TGAAGCGCTTTTGCTCACACTA |
| Erwinia amylovora ATCC 49946 | EAM_1665 | -145 | 3.9 | AAATGTTATTTTGTTATCATCT |
| Proteus mirabilis HI4320 | PMI1394 | -292 | 3.6 | TAATGTGCATTTATACACTTAT |
|
Position: -217
Score: 4.1 Sequence: AAATGGAATGCATATCACGTAA
Locus tag: XBJ1_2504
|
||||
| XBJ1_2504 | -217 | 4.1 | AAATGGAATGCATATCACGTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lpp | ||||
| Ortholog function: major outer membrane lipoprotein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1677 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Salmonella typhimurium LT2 | STM1377 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01710 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02134 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Enterobacter sp. 638 | Ent638_1767 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Erwinia amylovora ATCC 49946 | EAM_1656 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Serratia proteamaculans 568 | Spro_2186 | -55 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1866 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Edwardsiella tarda EIB202 | ETAE_1852 | -55 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Proteus mirabilis HI4320 | PMI1409 | -200 | 4.4 | TTTTGTGAAATAACACGCATTT |
|
Position: -60
Score: 4.1 Sequence: TATTGTGATTTCAATCATTACA
Locus tag: XBJ1_2512
|
||||
| XBJ1_2512 | -60 | 4.1 | TATTGTGATTTCAATCATTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aroH | ||||
| Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1704 | -106 | 4.3 | AGGTGTGACACACCTCGCACTT |
| -64 | 4 | TATCGTGATGCGCATCACTTCC | ||
| Salmonella typhimurium LT2 | STM1347 | -106 | 4.3 | AGGTGTGACACGCCTCGCACTT |
| -64 | 4 | TATCGTGATGCCCATCACTTCC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_01728 | -115 | 4.3 | AGGTGTGAAACGCCTCGCATTT |
| -64 | 4.3 | TATTGTGATGCCCATCACTTCC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02162 | -63 | 4 | TATCGTGATGCGCATCACTTCC |
| Enterobacter sp. 638 | Ent638_1743 | -126 | 3.6 | AGTTATGATCGCTTTCACTCTC |
| -62 | 3.6 | TAAGGTGATGCCCATCACTTCC | ||
| Yersinia pestis KIM | y1928 | -64 | 4.3 | TATTGTGATCGCCATCACTTCC |
| Serratia proteamaculans 568 | Spro_2172 | -135 | 3.9 | TTTTGTGCTTTTTTTAGCGATT |
| -64 | 4.3 | TATTGTGATCGCCATCACTTCC | ||
| Edwardsiella tarda EIB202 | ETAE_1792 | -63 | 4 | TATCGTGATCCCCATCACTTCC |
| Proteus mirabilis HI4320 | PMI1423 | -55 | 3.9 | TATTGTGATCTTAATCACTGGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2630 | -62 | 3.8 | TATTGTAATTTCCATTATCTAT |
|
Position: -285
Score: 3.5 Sequence: AATGTTTATTTTTTTCACTTTT
Position: -221
Score: 3.5 Sequence: ATATCAGACGAAAATCAAATAT
Locus tag: XBJ1_2549
|
||||
| XBJ1_2549 | -285 | 3.5 | AATGTTTATTTTTTTCACTTTT | |
| -221 | 3.5 | ATATCAGACGAAAATCAAATAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tcyP | ||||
| Ortholog function: L-cystine uptake protein TcyP | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1729 | -90 | 3.9 | ATATAAGAGCCAGCTCACAGTT |
| Salmonella typhimurium LT2 | STM1320 | -91 | 3.9 | ATATAAGAGCCAGCTCACAGTT |
| Citrobacter koseri ATCC BAA-895 | CKO_01755 | -90 | 3.7 | ATATAAGAGGTCGGTCACAGTT |
| Yersinia pestis KIM | y1878 | -166 | 3.6 | TGATTTGATTTAATACAAATCA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2410 | -176 | 3.7 | TGACGTTATCTGCTGCACCCAT |
|
Position: -194
Score: 4.3 Sequence: TTTTGTGACTGGCGTCTAATTA
Locus tag: XBJ1_2845
|
||||
| XBJ1_2845 | -194 | 4.3 | TTTTGTGACTGGCGTCTAATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ndh | ||||
| Ortholog function: NADH dehydrogenase (EC 1.6.99.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1109 | -154 | 3.9 | AAACTTGATTAACATCAATTTT |
| Salmonella typhimurium LT2 | STM1211 | -154 | 4.1 | AAACTTGATGCACATCAATTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01106 | -152 | 4.1 | AAACTTGATGCACATCAATTTT |
| Enterobacter sp. 638 | Ent638_1624 | -153 | 4 | AAACTTGATTCATATCAATTTT |
| Erwinia amylovora ATCC 49946 | EAM_1473 | -55 | 3.7 | TAAGGTTATTTTATTAACCTTT |
| Yersinia pestis KIM | y1777 | -152 | 3.8 | AAAGTTGATATATATCAATTTT |
| Serratia proteamaculans 568 | Spro_1926 | -153 | 4.3 | AAGTTTGATGTACATCAATTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1815 | -153 | 4 | TAAATTGATATATATCAATTTT |
| Edwardsiella tarda EIB202 | ETAE_2070 | -166 | 4.3 | TTATTTGATTTGAATCAATTTT |
| Proteus mirabilis HI4320 | PMI0875 | -157 | 4.6 | TTTTTTGATATAAATCAACTTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2821 | -154 | 3.8 | GAATTTGATGTTGTTCAATTTT |
|
Position: -131
Score: 3.7 Sequence: CTTTTAGATCGAGATAACACAA
Locus tag: XBJ1_2884
|
||||
| XBJ1_2884 | -131 | 3.7 | CTTTTAGATCGAGATAACACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fruK | ||||
| Ortholog function: 1-phosphofructokinase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2168 | -178 | 4.3 | AATTGTGCAGCACATCAAACTT |
| Salmonella typhimurium LT2 | STM2205 | -177 | 4.6 | AAATGTGCTTCACCTCAAAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_00614 | -50 | 4.1 | AAGTGTGCTTTATCTCTAAATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02599 | -177 | 3.5 | AAGTGTGCAGTACCTCTAAGTT |
| Enterobacter sp. 638 | Ent638_2762 | -178 | 4.3 | AAATGTGCTGCACTTCTAAATT |
| Erwinia amylovora ATCC 49946 | EAM_2222 | -179 | 4.4 | AAATGTGCTGGCTGTCAAAAAT |
| Yersinia pestis KIM | y2886 | -178 | 4.1 | AAATGTGCGGAATGTCAAAAAT |
| Serratia proteamaculans 568 | Spro_3229 | -177 | 4 | AAGTGTGCGTGAGGTCAAAAAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2728 | -180 | 4.1 | AAATGTGCGTGATGTCAAAATT |
| Edwardsiella tarda EIB202 | ETAE_2302 | -199 | 4.1 | AAATGTGCTGAAGGTCTAAAAT |
| Proteus mirabilis HI4320 | PMI2157 | -254 | 4.6 | AAACGTGATTTAGATCTAACTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2858 | -72 | 3.7 | TTTAGTGATATAAATAGAACTG |
|
Position: -132
Score: 4.2 Sequence: AAATGTGTTGGTTCGCACACTT
Locus tag: XBJ1_2893
|
||||
| XBJ1_2893 | -132 | 4.2 | AAATGTGTTGGTTCGCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: spr | ||||
| Ortholog function: predicted peptidase, outer membrane lipoprotein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2175 | -130 | 4.1 | TTTTGTGCGTTAGTCCACAGAT |
| Salmonella typhimurium LT2 | STM2214 | -128 | 3.7 | ATTTGTGCGTTCCGCCACAGAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02608 | -292 | 3.6 | TAGGGTAATCTCGTTCTCGTTT |
| -234 | 4.2 | AATTGTGCGTGACTGCACAAAT | ||
| Enterobacter sp. 638 | Ent638_2771 | -250 | 3.6 | AATCGCTTTGTCTATCACAATT |
| Yersinia pestis KIM | y2908 | -128 | 3.7 | GAATGTGCGTTCATGCACATTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2735 | -159 | 3.9 | TAATGTGCATTCTGGCACACTT |
| Edwardsiella tarda EIB202 | ETAE_2298 | -131 | 4.4 | AAGTGTGTTCTGCTGCACAATT |
| Proteus mirabilis HI4320 | PMI0831 | -129 | 4.2 | TTACGTGCTTTAGAGCACGTTT |
|
Position: -185
Score: 4.1 Sequence: AAATGAGAGTTTGATCTCACTT
Locus tag: XBJ1_2894
|
||||
| XBJ1_2894 | -185 | 4.1 | AAATGAGAGTTTGATCTCACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yejG | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2181 | -158 | 3.7 | AAACGTGACCACGCCCGCAGAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02614 | -204 | 3.8 | AAAGTTGTTTTGGATCACAGAA |
| Erwinia amylovora ATCC 49946 | EAM_2233 | -177 | 3.6 | AAATGAGCATTACTTCTCAAAA |
| Yersinia pestis KIM | y2914 | -238 | 4.4 | AAATGGGATCTGAATCCCAAAT |
| Serratia proteamaculans 568 | Spro_3250 | -214 | 4.2 | AAATGCGAGCTGAGTCGCAAAA |
| -121 | 4.1 | GCTTGTGATGTTTTTTACATTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2740 | -178 | 4 | ATTCGTGATCAGTTTGGCATTA |
| -101 | 3.8 | TGTTGTTTTTTTGTTCACGAAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2865 | -185 | 4.1 | AAATGAGAGATTGATCTCACTT |
| -183 | 3.6 | ATGAGAGATTGATCTCACTTTT | ||
| -141 | 3.8 | TAATGTAATACTATAAACACAA | ||
|
Position: 7
Score: 3.7 Sequence: TATTTAGATCCGTTCAACATAA
Locus tag: XBJ1_2941
|
||||
| XBJ1_2941 | 7 | 3.7 | TATTTAGATCCGTTCAACATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: astA | ||||
| Ortholog function: arginine succinyltransferase | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01494 | -274 | 4 | TATCTTGATGATCTTCAAAAAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3109 | -66 | 3.8 | AAAGATGATGCGGAGCATATTA |
|
Position: -246
Score: 4.3 Sequence: AATTGTGAAAAACATCATAAAG
Locus tag: XBJ1_2942
|
||||
| XBJ1_2942 | -246 | 4.3 | AATTGTGAAAAACATCATAAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: astC | ||||
| Ortholog function: bifunctional succinylornithine transaminase/acetylornithine transaminase | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01493 | -274 | 4 | TATCTTGATGATCTTCAAAAAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3110 | -66 | 3.8 | AAAGATGATGCGGAGCATATTA |
|
Position: -204
Score: 4.5 Sequence: CGATGTGATGTAAAACACAAAA
Position: -94
Score: 4.1 Sequence: TGACTTTATCTGTGTCACATTT
Locus tag: XBJ1_2985
|
||||
| XBJ1_2985 | -204 | 4.5 | CGATGTGATGTAAAACACAAAA | |
| -94 | 4.1 | TGACTTTATCTGTGTCACATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hutU | ||||
| Ortholog function: urocanate hydratase | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02357 | -123 | 3.8 | AAGCGTGATTGCTGACGCAATA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00795 | -124 | 4 | AAACGTGATTGCTGACGCAATA |
| Enterobacter sp. 638 | Ent638_1263 | -120 | 4 | AAGCGTGATAGCTAACGCAATA |
| Erwinia amylovora ATCC 49946 | EAM_1253 | -121 | 3.8 | TTTTGTGACAAAGCTGGCACAA |
| Yersinia pestis KIM | y4038 | -261 | 4.9 | ATATGTGATTTGGTGCGCAAAT |
| Serratia proteamaculans 568 | Spro_0805 | -196 | 4.8 | TATTGTGATTTGACGCGCAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3193 | -203 | 4.7 | ATTTGTGATTATAAACACAAAA |
|
Position: -194
Score: 4 Sequence: TTTTGTTAAGTTCGTCCCATTT
Locus tag: XBJ1_2995
|
||||
| XBJ1_2995 | -194 | 4 | TTTTGTTAAGTTCGTCCCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadL | ||||
| Ortholog function: Long-chain fatty acid transport protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2344 | -269 | 4.8 | ATAAGTGACCGAAATCACACTT |
| -247 | 3.9 | AAAAATGATCTAAAACAAAATT | ||
| Salmonella typhimurium LT2 | STM2391 | -262 | 4.8 | TTAAGTGACCGAAATCACACTT |
| -240 | 3.9 | AAAAATGATCTAAAACAAAAAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00446 | -263 | 4.8 | ATAAGTGACCGAAATCACACTT |
| -241 | 3.9 | AAAAATGATCTAAAACAAAAAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02726 | -264 | 4.7 | TTAAGTGACAGAAATCACACTT |
| -242 | 3.9 | AAAAATGATCTAAAACAAAAAT | ||
| Enterobacter sp. 638 | Ent638_2884 | -269 | 4.2 | GTAAGTGACCGATATCACACTA |
| -247 | 4 | AAAAATGATCTAGCGCAAAAAT | ||
| -214 | 3.7 | ATGAGTGCGACGGCTCGCATTT | ||
| Erwinia amylovora ATCC 49946 | EAM_2348 | -194 | 3.9 | TTTTGTTAAGCAGATCTCTTTT |
| Serratia proteamaculans 568 | Spro_3381 | -271 | 5.1 | TTAAGTGATGGAAATCACAAAT |
| -196 | 3.8 | TTTTGTTAGCCAGATCTCTCTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3081 | -332 | 3.8 | AATTTTTATCTTCCTTATATTT |
| -262 | 4.9 | TTTAGTGATATCAGTCACATTA | ||
| Proteus mirabilis HI4320 | PMI1810 | -326 | 3.7 | AAGTGTTAATTATCTATCATAA |
| -186 | 4.2 | TAATGTTAACTAAATCCCAAAT | ||
|
Position: -239
Score: 3.8 Sequence: AAAAGCGATTTGTATCACCACA
Position: -217
Score: 3.9 Sequence: AGGTCTGACTAAGGTCACAAAT
Locus tag: XBJ1_3033
|
||||
| XBJ1_3033 | -239 | 3.8 | AAAAGCGATTTGTATCACCACA | |
| -217 | 3.9 | AGGTCTGACTAAGGTCACAAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glyA | ||||
| Ortholog function: serine hydroxymethyltransferase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2551 | -229 | 3.8 | GAATGTGATGAAGTGAAAAATT |
| Proteus mirabilis HI4320 | PMI1867 | -210 | 3.8 | TAGCGAGATGTGCCTCAAAAAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3291 | -178 | 3.8 | TAGCGTAATTTTCATTACACTA |
|
Position: -2
Score: 4.3 Sequence: CTATGTTATTTTTTTCACCATT
Locus tag: XBJ1_3043
|
||||
| XBJ1_3043 | -2 | 4.3 | CTATGTTATTTTTTTCACCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yedJ | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1962 | -287 | 4.6 | TGGTGTGATCAGGCGCACATTA |
| Salmonella typhimurium LT2 | STM1993 | -70 | 5.5 | AAATGTGATTAATATCACATTA |
| -34 | 4.4 | TCATATGACTTACATCACAAAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00980 | -168 | 3.8 | TTTTGTGAATGTTTTATCGTAA |
| Erwinia amylovora ATCC 49946 | EAM_2082 | -129 | 3.8 | TGATGTAATGAGCAACAAATAA |
| -101 | 4.4 | AAGTTTGATGTGGCTAAAATTA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0518 | -156 | 5.6 | AAATGTGATGTGAATCACACAA |
|
Position: -155
Score: 4.6 Sequence: TGTGGTGACGTTTATCACATAT
Locus tag: XBJ1_3174
|
||||
| XBJ1_3174 | -155 | 4.6 | TGTGGTGACGTTTATCACATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nagE | ||||
| Ortholog function: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) | ||||
| Enterobacter sp. 638 | Ent638_1194 | -162 | 4.4 | TTTGGTGACAAAACTCACAAAA |
| -128 | 3.6 | ATTTGCGATACGAATTAATTTT | ||
| Yersinia pestis KIM | y1203 | -206 | 4.9 | TTTGGTGATATTTATCACAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1327 | -202 | 5 | TTTGGTGATTTTTATCACATAA |
| Edwardsiella tarda EIB202 | ETAE_2616 | -157 | 4.8 | ATTGGTGATAGTTATCACAAAT |
| Proteus mirabilis HI4320 | PMI0455 | -150 | 4.6 | ATAGGTGACTTTAATCACAAAT |
|
Position: -103
Score: 3.6 Sequence: TTTTGTTATATATTTCGTGATC
Position: -91
Score: 4.1 Sequence: TTTCGTGATCTACGTTACAGAC
Locus tag: XBJ1_3221
|
||||
| XBJ1_3221 | -103 | 3.6 | TTTTGTTATATATTTCGTGATC | |
| -91 | 4.1 | TTTCGTGATCTACGTTACAGAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cspE | ||||
| Ortholog function: cold shock protein E | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0623 | -114 | 4 | TAACGCGACTTTTATCACTTTT |
| Salmonella typhimurium LT2 | STM0629 | -114 | 4.3 | TAACGCGATATTTATCACTTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02534 | -21 | 4.3 | TAACGCGATATTTATCACTTTT |
| Enterobacter sp. 638 | Ent638_1159 | -114 | 3.8 | TAACGCGACTTTTGTCACTTTT |
| Erwinia amylovora ATCC 49946 | EAM_1116 | -113 | 3.6 | AAAAACGATATTTATCACTTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1294 | -113 | 3.9 | TTTAGCGACTTTTATCACTTTT |
|
Position: -84
Score: 4.2 Sequence: AAAAGTGATTTAGATCATTCTT
Locus tag: XBJ1_3261
|
||||
| XBJ1_3261 | -84 | 4.2 | AAAAGTGATTTAGATCATTCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: raiA | ||||
| Ortholog function: stationary phase translation inhibitor and ribosome stability factor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2597 | -81 | 4.8 | TTATGAGATTTTCATCACACAT |
| Citrobacter koseri ATCC BAA-895 | CKO_03918 | -40 | 5.2 | TAATGTGATTTAAATCACGCTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02919 | -88 | 5.6 | AAATGTGATTTATATCACACAT |
| Enterobacter sp. 638 | Ent638_3076 | -81 | 5.4 | ATGTGTGATTTAGATCACACAT |
| Erwinia amylovora ATCC 49946 | EAM_2617 | -83 | 5.2 | AAATGTGATTTCAATCACGATT |
| Serratia proteamaculans 568 | Spro_0882 | -83 | 4.8 | ATACGTGATTTTCATCACGCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3349 | -86 | 4 | AAAAGCGATCAATCTCACGCTT |
| Edwardsiella tarda EIB202 | ETAE_2834 | -82 | 3.8 | ATCCGTGATTTTCCTCTCACAC |
| Proteus mirabilis HI4320 | PMI0391 | -82 | 4.6 | AAAAGTGATCTTGATCATGTTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1266 | -87 | 5.1 | AATAGTGATTTAGATCACCTTT |
|
Position: -232
Score: 3.6 Sequence: TCGAGTGATTCAGCTCAAGCAA
Locus tag: XBJ1_3325
|
||||
| XBJ1_3325 | -232 | 3.6 | TCGAGTGATTCAGCTCAAGCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yafK | ||||
| Ortholog function: hypothetical protein | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00238 | -208 | 3.7 | AAATGCGAGCTATTGCGCAAAG |
| Yersinia pestis KIM | y0949 | -217 | 3.7 | TTATTTTATACAAAACATATAT |
| Serratia proteamaculans 568 | Spro_0952 | -136 | 4.2 | TTTTTTTATACACAACACATAT |
| Proteus mirabilis HI4320 | PMI0351 | -297 | 3.7 | AATTGTTACTATTTTCTCTTAT |
| -228 | 3.7 | TCGAGTGATTTAGCTCAAGCAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1195 | -232 | 3.9 | TCAAGTGATTTAGTTCAAGCAA |
|
Position: -212
Score: 4.2 Sequence: TTTAGTGAGATATATCACATCC
Locus tag: XBJ1_3444
|
||||
| XBJ1_3444 | -212 | 4.2 | TTTAGTGAGATATATCACATCC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: serA | ||||
| Ortholog function: D-3-phosphoglycerate dehydrogenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2913 | -210 | 4.1 | TTTGGTGACATGTGTCACGCTT |
| Salmonella typhimurium LT2 | STM3062 | -217 | 4.5 | TTTGGTGACATGTATCACGTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03348 | -214 | 4.6 | TTTGGTGACTTCTGTCACATTT |
| Enterobacter sp. 638 | Ent638_3332 | -215 | 4.1 | TTCGGTGACTTGTATCACGTTT |
| Yersinia pestis KIM | y3301 | -126 | 4.8 | TTTGGTGATATATATCACATTC |
| Serratia proteamaculans 568 | Spro_3923 | -215 | 4.4 | TTTGGTGACATATGTCACATTG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3905 | -214 | 3.9 | TTTGGTACTTAATATCACATTT |
| Proteus mirabilis HI4320 | PMI2031 | -210 | 4 | TTCAGTGATATATATCACACGA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3605 | -207 | 4.4 | TTTAGTGATATATTTCATATCT |
| -178 | 4.2 | TTATTTGATCTAAATCCTAATT | ||
| -105 | 4.4 | TTATGTGATGGGAATAGCAATC | ||
|
Position: -108
Score: 3.8 Sequence: TTTTGTGCTGCACAGCACTATG
Locus tag: XBJ1_3445
|
||||
| XBJ1_3445 | -108 | 3.8 | TTTTGTGCTGCACAGCACTATG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rpiA | ||||
| Ortholog function: Ribose 5-phosphate isomerase A (EC 5.3.1.6) | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03349 | -82 | 3.9 | TTGTGTGATCTGCATCGCAGGG |
| Enterobacter sp. 638 | Ent638_3333 | -47 | 3.8 | TAATGTGACACCGGTCACAGGG |
| Yersinia pestis KIM | y3302 | -114 | 4.2 | AACTGTGATCTCGCTAGAATTA |
| Edwardsiella tarda EIB202 | ETAE_2950 | -276 | 4 | TTTTGTTATGTATAAAACGTTA |
| Proteus mirabilis HI4320 | PMI2032 | -96 | 3.8 | TAAAATGTTGTGTCTCAAATTT |
|
Position: -78
Score: 4 Sequence: CATAGTGCTGTGCAGCACAAAA
Locus tag: XBJ1_3446
|
||||
| XBJ1_3446 | -78 | 4 | CATAGTGCTGTGCAGCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: iciA | ||||
| Ortholog function: chromosome replication initiation inhibitor protein | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03350 | -107 | 3.8 | CCCTGCGATGCAGATCACACAA |
| Enterobacter sp. 638 | Ent638_3334 | -126 | 3.9 | CCCTGTGACCGGTGTCACATTA |
| -48 | 3.7 | ATTTGTGTCATAGTGCAGAATA | ||
| Yersinia pestis KIM | y3303 | -249 | 3.7 | TAATTCTAGCGAGATCACAGTT |
| Edwardsiella tarda EIB202 | ETAE_2951 | -48 | 3.8 | TAACGTTTTATACATAACAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3610 | -41 | 3.6 | CATAGTGATATTCAGAAAAATA |
|
Position: -184
Score: 3.6 Sequence: TTATGTGAATGAATTAACATGC
Locus tag: XBJ1_3452
|
||||
| XBJ1_3452 | -184 | 3.6 | TTATGTGAATGAATTAACATGC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acnB | ||||
| Ortholog function: Aconitate hydratase 2 (EC 4.2.1.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0118 | -144 | 3.5 | TTTTGTAAACAGATTAACACCT |
| Salmonella typhimurium LT2 | STM0158 | -157 | 3.9 | TTTTGTAAACAGATTAACACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00124 | -260 | 3.5 | TTTTGTAAACAGATTAACACCT |
| Yersinia pestis KIM | y0771 | -276 | 4.3 | TTATGTGAACGAATTAACACTG |
| Serratia proteamaculans 568 | Spro_4008 | -192 | 3.9 | TTATGTGAACGAATTAACAACC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3778 | -163 | 4.3 | TTATGTGAACGAATTAACAATC |
| Proteus mirabilis HI4320 | PMI2040 | -177 | 4.5 | TTATGTGAACGAATTAACATAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3619 | -261 | 3.6 | TTCTGTGAACGAATTAACATCG |
|
Position: -133
Score: 4.1 Sequence: TGTTGGGATTTCTGTCACGTTA
Locus tag: XBJ1_3453
|
||||
| XBJ1_3453 | -133 | 4.1 | TGTTGGGATTTCTGTCACGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lpdA | ||||
| Ortholog function: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0116 | -224 | 3.3 | AATTGTTAACAATTTTGTAAAA |
| Salmonella typhimurium LT2 | STM0154 | -153 | 3.5 | GTTTGTGAGGTTATTAGCGAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03256 | -95 | 3.3 | AATTGTTAACAATTTTGTAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00120 | -105 | 3.3 | AATTGTTAACAATTTTGTAAAA |
| Yersinia pestis KIM | y0769 | -253 | 3.3 | ATTGGTGATCTTGTTATTACTG |
| Serratia proteamaculans 568 | Spro_4009 | -246 | 3.6 | TATGGTGATGTAATGAAAAAAG |
| Proteus mirabilis HI4320 | PMI2044 | -133 | 3.4 | GGTTGTGAGATCTGTCATGTTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3621 | -131 | 3.9 | TGTTGCGAGTTCTGTCACGTTA |
|
Position: -335
Score: 3.7 Sequence: AAATTTAATTGAATTAATATAT
Position: -315
Score: 3.3 Sequence: ATATGCTATGTGAATAAATATA
Position: -243
Score: 3.5 Sequence: AAAATTAAACCCCATCAAATTT
Position: -192
Score: 3.7 Sequence: TTTTCTGATAAAATTTAAAATA
Position: -150
Score: 3.8 Sequence: TTTTATGATTTAGCTCAAGGTC
Position: -18
Score: 3.3 Sequence: TGATCTGACCCGGTTCTCATGA
Locus tag: XBJ1_3456
|
||||
| XBJ1_3456 | -335 | 3.7 | AAATTTAATTGAATTAATATAT | |
| -315 | 3.3 | ATATGCTATGTGAATAAATATA | ||
| -243 | 3.5 | AAAATTAAACCCCATCAAATTT | ||
| -192 | 3.7 | TTTTCTGATAAAATTTAAAATA | ||
| -150 | 3.8 | TTTTATGATTTAGCTCAAGGTC | ||
| -18 | 3.3 | TGATCTGACCCGGTTCTCATGA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pdhR | ||||
| Ortholog function: Transcriptional repressor for pyruvate dehydrogenase complex | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0113 | -156 | 3.7 | AAACGTTATATATGTCAAGTTG |
| -131 | 3.8 | AAATGTGCACAGTTTCATGATT | ||
| Salmonella typhimurium LT2 | STM0151 | -157 | 3.5 | AAACATGATTTCTGTAAAATTG |
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| -79 | 3 | CTTATTAAGCTTTCTCACGAAA | ||
| -54 | 3.4 | TAATGGGACAGGTTCCAGATAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03260 | -180 | 3.2 | ATTTGTGCATAGTTACATCTTT |
| -157 | 3.1 | AAACGTTATTTCTGTAATCTTG | ||
| -148 | 3.3 | TTCTGTAATCTTGTTAAAATGT | ||
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00117 | -155 | 3.2 | AAATGTTATTTCTGTAAGGTTG |
| -118 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Enterobacter sp. 638 | Ent638_0659 | -120 | 3.2 | TTTACTGATTTCAATCAAAACC |
| -77 | 3.1 | TATTGTATTTTCTGGCGAAAAT | ||
| -68 | 3 | TTTAGCGATACGAATATGAAAT | ||
| Erwinia amylovora ATCC 49946 | EAM_0746 | -198 | 3.3 | TAAAGCGATCGGATTTAACAAT |
| Yersinia pestis KIM | y0766 | -151 | 4.2 | AAATGTGCTGGGTTTCATGATT |
| -139 | 3.3 | TTTCATGATTTCGGTCAAGGTC | ||
| -74 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Serratia proteamaculans 568 | Spro_4012 | -132 | 3.1 | AAATGTGCGGGTAACCTGATTT |
| -56 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3790 | -120 | 3.7 | ATTGGTGATTTAGCTCAAGGTC |
| -55 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Edwardsiella tarda EIB202 | ETAE_0658 | -143 | 3.2 | TTTCATGATTTACATCAATAGT |
| Proteus mirabilis HI4320 | PMI2047 | -218 | 3.1 | TGTTTTTAATCTTTTCTAATAA |
| -199 | 4.4 | TAATGCGATCTAGTTATCAAAT | ||
| -181 | 4.2 | AAATTTGATGAATTTATCAAAT | ||
| -158 | 3 | ATTTGTTAAAATTTGCAGGTTT | ||
| -138 | 3.9 | TTTTATGATTTCGCTCAACAAC | ||
| -95 | 3.1 | CTTTGTTACTTTATTATCCATT | ||
| -89 | 3.1 | TACTTTATTATCCATTACATTA | ||
|
Position: -139
Score: 3.3 Sequence: ATTTCTGGTGTGTTTTTCATTT
Position: -121
Score: 4 Sequence: ATTTGCGAACCAGCTCGAAAAT
Locus tag: XBJ1_3459
|
||||
| XBJ1_3459 | -139 | 3.3 | ATTTCTGGTGTGTTTTTCATTT | |
| -121 | 4 | ATTTGCGAACCAGCTCGAAAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ppdD | ||||
| Ortholog function: predicted major pilin subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0108 | -145 | 3.2 | CTTCGTAACGCCTCGCAAATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_03268 | -146 | 3.4 | TTTTTCGAGCGGCCTCGCAAAC |
| Yersinia pestis KIM | y0761 | -123 | 3.8 | TTACGTTATTGCAATAACCTAA |
| Proteus mirabilis HI4320 | PMI2049 | -146 | 4.3 | TAATGCGAACTTGCTCTCAATA |
|
Position: -333
Score: 5.2 Sequence: TGATGTGATACTAATCACAATA
Position: -281
Score: 4.3 Sequence: TAGTGTGATTTGTAACGCGAAT
Locus tag: XBJ1_3542
|
||||
| XBJ1_3542 | -333 | 5.2 | TGATGTGATACTAATCACAATA | |
| -281 | 4.3 | TAGTGTGATTTGTAACGCGAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: deoC | ||||
| Ortholog function: 2-deoxyribose-5-phosphate aldolase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4381 | -149 | 4.6 | TTATTTGAACCAGATCGCATTA |
| -96 | 4.5 | AATTGTGATGTGTATCGAAGTG | ||
| Salmonella typhimurium LT2 | STM4567 | -133 | 4.9 | TAATTTGATTCAGATCTCATTA |
| -80 | 4.2 | AACTGTGATGTATATCGAAGTG | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03410 | -134 | 4.2 | TTATTTGAAGTGGATCTCGTTA |
| -81 | 4.2 | AACTGTGATGTATATCGAAGTG | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04837 | -158 | 5.2 | ATTTGTGATTTTAATCACGTTA |
| -105 | 3.7 | AACTGTGATGAATGTCGAAGTG | ||
| Enterobacter sp. 638 | Ent638_0541 | -151 | 4.6 | AAATTTGAAGTGGATCTCATTA |
| -98 | 3.7 | AACTGTGATGAATGTCGAAGTG | ||
| Erwinia amylovora ATCC 49946 | EAM_0615 | -233 | 4.6 | TGATGTGATAATTCTAACATTA |
| Yersinia pestis KIM | y3743 | -169 | 3.7 | TGCGGTGAGATGGATCTCAATT |
| Serratia proteamaculans 568 | Spro_0660 | -262 | 4.6 | ATTTGTGAACGATATCGCGTTA |
| -240 | 5.5 | TTTTGTGATGGTCTTCACATAT | ||
| -188 | 3.8 | TAGTGTGACTGTGAACGCGAAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0727 | -282 | 4.4 | AAGTGTGAATGAATGCACAAAA |
| Proteus mirabilis HI4320 | PMI2416 | -267 | 4.4 | ATATGTGAGTTACTTCGCAACT |
| -135 | 5.6 | TTTTGTGATTCTGATCACAATT | ||
| -83 | 4.5 | TATTGTGACAGAAAGCACATCT | ||
|
Position: -184
Score: 5.5 Sequence: TTATGTGATCTGGATCTCATTT
Locus tag: XBJ1_3543
|
||||
| XBJ1_3543 | -184 | 5.5 | TTATGTGATCTGGATCTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nupC2 | ||||
| Ortholog function: Na+ dependent nucleoside transporter | ||||
| Yersinia pestis KIM | y3744 | -154 | 3.8 | CTTTGTCAATAACCTCACATAT |
| -115 | 5.5 | TAATGTGATTATGATCACATTT | ||
| Serratia proteamaculans 568 | Spro_0659 | -181 | 3.9 | AACCGTGACGCATGTCACGTAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0473 | -182 | 4.9 | AATTGTGACGAAGATCACTTTT |
| Edwardsiella tarda EIB202 | ETAE_0482 | -232 | 4.9 | TGATGTGATATGCATCACTTTT |
| Proteus mirabilis HI4320 | PMI2418 | -180 | 5.2 | TAGTGTGATTTAGATCTCATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0519 | -178 | 5.5 | TTGTGTGATTCACATCACATTT |
|
Position: -238
Score: 4.7 Sequence: ATGTGTGATTGAAGTCACGATT
Locus tag: XBJ1_3572
|
||||
| XBJ1_3572 | -238 | 4.7 | ATGTGTGATTGAAGTCACGATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fxsA | ||||
| Ortholog function: suppressor of F plamsid exlusion of phage T7 | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4140 | -202 | 4.1 | TACCGTAATCTGGATCACTTTA |
| -152 | 4.3 | ATTTGTGAAATAGATCACCGCT | ||
| Salmonella typhimurium LT2 | STM4327 | -203 | 4.1 | TACCGTAATCTGGATCACTTAA |
| -153 | 4.1 | TTTTGTGAAATAGGTCACCGCT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03695 | -156 | 4.1 | TTTTGTGAAATAGGTCACCGCT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04530 | -140 | 3.7 | ATCTGTGAAATGGGTCACCGCT |
| Enterobacter sp. 638 | Ent638_0327 | -151 | 3.8 | ATCTGTGAAATGAATCACCGCT |
| Erwinia amylovora ATCC 49946 | EAM_0417 | -161 | 3.9 | ATATCTGTTCCAGGTCACATTG |
| Yersinia pestis KIM | y0607 | -245 | 4.8 | ATCTGTGATTGCTCTCACACTT |
| Serratia proteamaculans 568 | Spro_0407 | -117 | 4.9 | TTCTGTGATCTCATTCACGTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0623 | -245 | 3.7 | AACTGTGATTGTAGTCACGAGT |
| -185 | 3.6 | AAATGTGCAAAGGCGCACCCAT | ||
| Edwardsiella tarda EIB202 | ETAE_0312 | -189 | 4.6 | ATCTGTGATAATACTCACAGAT |
| Proteus mirabilis HI4320 | PMI2545 | -188 | 4.7 | TTTTGTGATCTATCTCATGGAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4136 | -188 | 5.6 | ATATGTGATATTTATCACAATT |
|
Position: -216
Score: 4.9 Sequence: AATCGTGACTTCAATCACACAT
Position: -101
Score: 3.9 Sequence: ATAAGTGATTAATATCACGGCA
Locus tag: XBJ1_3573
|
||||
| XBJ1_3573 | -216 | 4.9 | AATCGTGACTTCAATCACACAT | |
| -101 | 3.9 | ATAAGTGATTAATATCACGGCA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aspA | ||||
| Ortholog function: aspartate ammonia-lyase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4139 | -206 | 4.5 | AGCGGTGATCTATTTCACAAAT |
| -156 | 4.2 | TAAAGTGATCCAGATTACGGTA | ||
| Salmonella typhimurium LT2 | STM4326 | -209 | 4.2 | AGCGGTGACCTATTTCACAAAA |
| -159 | 4.2 | TTAAGTGATCCAGATTACGGTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03696 | -54 | 4.2 | AGCGGTGACCTATTTCACAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04529 | -204 | 3.9 | AGCGGTGACCCATTTCACAGAT |
| -154 | 3.8 | ATAAGTGATCAAGCTTACTGAT | ||
| Enterobacter sp. 638 | Ent638_0326 | -205 | 4.1 | AGCGGTGATTCATTTCACAGAT |
| Erwinia amylovora ATCC 49946 | EAM_0416 | -228 | 4.2 | CAATGTGACCTGGAACAGATAT |
| Yersinia pestis KIM | y0606 | -224 | 4.6 | AAGTGTGAGAGCAATCACAGAT |
| Serratia proteamaculans 568 | Spro_0406 | -205 | 4.7 | AAACGTGAATGAGATCACAGAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0621 | -272 | 4 | ACTCGTGACTACAATCACAGTT |
| Edwardsiella tarda EIB202 | ETAE_0311 | -197 | 4.4 | ATCTGTGAGTATTATCACAGAT |
| Proteus mirabilis HI4320 | PMI2546 | -206 | 4.1 | ATCCATGAGATAGATCACAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4137 | -274 | 3.8 | AGATATAATTGGGGTCACAGTT |
| -211 | 5.6 | AATTGTGATAAATATCACATAT | ||
|
Position: -144
Score: 4 Sequence: AATTCTGATATGCTTTGCAAAA
Locus tag: XBJ1_3682
|
||||
| XBJ1_3682 | -144 | 4 | AATTCTGATATGCTTTGCAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hpt | ||||
| Ortholog function: hypoxanthine phosphoribosyltransferase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0125 | -147 | 5.3 | ATGTGTGATCGTCATCACAATT |
| Salmonella typhimurium LT2 | STM0170 | -147 | 5.3 | ATGTGTGATCGTCATCACAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03242 | -135 | 5.3 | AAGTGTGATCGTCATCACAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00133 | -134 | 5.4 | AAGTGTGATCGGAATCACAAAT |
| Enterobacter sp. 638 | Ent638_0673 | -180 | 3.6 | AATTTTGATAGCAATTAATTAT |
| -148 | 5.4 | AAGTGTGATCGGAATCACAAAT | ||
| Proteus mirabilis HI4320 | PMI0160 | -154 | 3.6 | TACTGTAATAAGTAACAAAATT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0860 | -144 | 4 | AATTCTGATATGCTTTGCAAAA |
|
Position: -86
Score: 3.4 Sequence: AATTTTTAAGTGGATTACTATA
Locus tag: XBJ1_3774
|
||||
| XBJ1_3774 | -86 | 3.4 | AATTTTTAAGTGGATTACTATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aroA | ||||
| Ortholog function: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0908 | -155 | 4.8 | TTGTGTGATGCAAGCCACATTT |
| Salmonella typhimurium LT2 | STM0978 | -142 | 4.2 | TTGTGTGACGCATGCCGCATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02164 | -171 | 4.6 | TTGTGTGACGTAGCGCGCATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00936 | -145 | 3.7 | TTGTGTGACGGCGGCCGCGTTT |
| Enterobacter sp. 638 | Ent638_1428 | -119 | 4.4 | TTGTGTGACGGTGGACACATTT |
| Yersinia pestis KIM | y2783 | -39 | 3.3 | TATAACGATGGCAATCTCAGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2593 | -78 | 3.5 | AAGTATGACGGGTATAAAAATG |
| Edwardsiella tarda EIB202 | ETAE_2177 | -104 | 3.8 | TATAGTGACAGCGCTCAATAAA |
|
Position: -226
Score: 3.3 Sequence: ATTTGTGACTGTATAGTCATAA
Position: -51
Score: 3.2 Sequence: ATCCGTGATTATATAAATATTT
Position: -4
Score: 3.2 Sequence: AAATATGAGCAAGGTTACTGTT
Locus tag: XBJ1_3776
|
||||
| XBJ1_3776 | -226 | 3.3 | ATTTGTGACTGTATAGTCATAA | |
| -51 | 3.2 | ATCCGTGATTATATAAATATTT | ||
| -4 | 3.2 | AAATATGAGCAAGGTTACTGTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aroA | ||||
| Ortholog function: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0908 | -155 | 4.8 | TTGTGTGATGCAAGCCACATTT |
| Salmonella typhimurium LT2 | STM0978 | -142 | 4.2 | TTGTGTGACGCATGCCGCATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02164 | -171 | 4.6 | TTGTGTGACGTAGCGCGCATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00936 | -145 | 3.7 | TTGTGTGACGGCGGCCGCGTTT |
| Enterobacter sp. 638 | Ent638_1428 | -119 | 4.4 | TTGTGTGACGGTGGACACATTT |
| Yersinia pestis KIM | y2783 | -39 | 3.3 | TATAACGATGGCAATCTCAGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2593 | -78 | 3.5 | AAGTATGACGGGTATAAAAATG |
| Edwardsiella tarda EIB202 | ETAE_2177 | -104 | 3.8 | TATAGTGACAGCGCTCAATAAA |
|
Position: -129
Score: 3.7 Sequence: GTTCGTGATCATGATCTCTTTA
Locus tag: XBJ1_3816
|
||||
| XBJ1_3816 | -129 | 3.7 | GTTCGTGATCATGATCTCTTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rnk | ||||
| Ortholog function: Regulator of nucleoside diphosphate kinase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0610 | -140 | 3.8 | GAATGTGACGCAAATCACTTCA |
| Salmonella typhimurium LT2 | STM0616 | -141 | 3.8 | GAATGTGAACTAAATCACTTCA |
| Citrobacter koseri ATCC BAA-895 | CKO_02549 | -141 | 3.9 | GAATGTGAGCTAAATCACTTCA |
| Enterobacter sp. 638 | Ent638_1148 | -187 | 4.1 | AAATCTGAGAACGATCACGTTT |
| -140 | 3.8 | GAATGTGACATTCATCACTTCA | ||
| Serratia proteamaculans 568 | Spro_4382 | -170 | 3.7 | CTTCGTGATCGGGATCTCTTTC |
| -67 | 3.8 | TTTTGTGCTGTTTTTCCGAATT | ||
| Edwardsiella tarda EIB202 | ETAE_0492 | -145 | 4.4 | ATTTGTGAGCCAGCTCTCTTTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4046 | -127 | 3.7 | GTTCGTGATCATGATCTCTTTA |
|
Position: -349
Score: 4.4 Sequence: ATTAATGATCTCAGTCACAAAA
Locus tag: XBJ1_3852
|
||||
| XBJ1_3852 | -349 | 4.4 | ATTAATGATCTCAGTCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltB | ||||
| Ortholog function: glutamate synthase, large subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3212 | -199 | 4.2 | AATTTTGCGCTAAAGCACATTT |
| Salmonella typhimurium LT2 | STM3330 | -288 | 3.7 | ATCTGTGCTACAGCACACTTTT |
| Enterobacter sp. 638 | Ent638_3656 | -298 | 3.9 | GATAGTGAGTCAGATCACACTC |
| Edwardsiella tarda EIB202 | ETAE_0527 | -278 | 4.9 | AACTGTGATGCAGCCCACATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4009 | -241 | 4 | ATATTTGACCTGATTTATATTT |
|
Position: -206
Score: 3.9 Sequence: ATTTTTAAATATATTCACATTA
Position: -145
Score: 4.1 Sequence: TTTCTTGATACTTGTCACAATC
Position: -86
Score: 4 Sequence: AAATTTGATCTCAATCTCATCC
Locus tag: XBJ1_3871
|
||||
| XBJ1_3871 | -206 | 3.9 | ATTTTTAAATATATTCACATTA | |
| -145 | 4.1 | TTTCTTGATACTTGTCACAATC | ||
| -86 | 4 | AAATTTGATCTCAATCTCATCC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadH | ||||
| Ortholog function: 2,4-dienoyl-CoA reductase [NADPH] (2,4-dienoyl coenzyme A reductase) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3081 | -112 | 3.9 | CTTTTTGAATCCCATCACAAAC |
| Salmonella typhimurium LT2 | STM3219 | -113 | 4.3 | TTTTTTGAATCCCATCACAATC |
| Citrobacter koseri ATCC BAA-895 | CKO_04487 | -113 | 4.3 | TTTTTTGAATCCCATCACAATC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03510 | -111 | 3.9 | TTCTTTGAATCCCATCACAATC |
| Enterobacter sp. 638 | Ent638_3539 | -111 | 3.9 | ATCTTTGAATCCCATCACATTC |
| Erwinia amylovora ATCC 49946 | EAM_0507 | -169 | 3.8 | AACCGTGACTGAGATCGCTAAA |
| Yersinia pestis KIM | y3589 | -131 | 4 | ATTCATGACGGCTATCACAATC |
| Serratia proteamaculans 568 | Spro_4309 | -126 | 4.2 | ATTCATGACATCTATCACATTC |
| Proteus mirabilis HI4320 | PMI3702 | -213 | 3.8 | TATTATTATATGATTAAAAAAT |
| -103 | 3.8 | TTCCATGATTAAGATCACAACT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3990 | -161 | 4.3 | TTTCATGACCTTCATCACATTC |
|
Position: -176
Score: 3.9 Sequence: TTTCATGATGGAACTAAAATTA
Position: -111
Score: 3.7 Sequence: TATTTTGACCAATATCAGTAAT
Locus tag: XBJ1_4002
|
||||
| XBJ1_4002 | -176 | 3.9 | TTTCATGATGGAACTAAAATTA | |
| -111 | 3.7 | TATTTTGACCAATATCAGTAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pgi | ||||
| Ortholog function: Glucose-6-phosphate isomerase (EC 5.3.1.9) | ||||
| Salmonella typhimurium LT2 | STM4221 | -61 | 3.7 | TTCTGTGACTGGCGTTACAATC |
| Citrobacter koseri ATCC BAA-895 | CKO_03893 | -61 | 4.1 | TTTTGTGACTGGCGTTACAATC |
| Serratia proteamaculans 568 | Spro_4477 | -80 | 3.7 | AAAAGAGATCATAATCACAGTC |
| Proteus mirabilis HI4320 | PMI2754 | -245 | 3.7 | CAGTGAGATGTTAAACACAGTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4379 | -205 | 3.8 | TGACGCGATGAGAATCATAAAA |
|
Position: -271
Score: 3.7 Sequence: TGAAGCGAGCCATTTCTCATTT
Position: -208
Score: 3.3 Sequence: TTATTTCTTATATATAACAAAA
Position: -206
Score: 3.2 Sequence: ATTTCTTATATATAACAAAAAG
Position: -117
Score: 3.4 Sequence: TCATTTGATTTATTTAAATTAA
Position: -68
Score: 3.3 Sequence: GTTTTTGATTTATTTTTAATAT
Position: -57
Score: 3.4 Sequence: ATTTTTAATATTGTTTACTCTT
Locus tag: XBJ1_4009
|
||||
| XBJ1_4009 | -271 | 3.7 | TGAAGCGAGCCATTTCTCATTT | |
| -208 | 3.3 | TTATTTCTTATATATAACAAAA | ||
| -206 | 3.2 | ATTTCTTATATATAACAAAAAG | ||
| -117 | 3.4 | TCATTTGATTTATTTAAATTAA | ||
| -68 | 3.3 | GTTTTTGATTTATTTTTAATAT | ||
| -57 | 3.4 | ATTTTTAATATTGTTTACTCTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aceB | ||||
| Ortholog function: malate synthase A | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4014 | -117 | 3.6 | AATTGTTTTTGATTTTGCATTT |
| Salmonella typhimurium LT2 | STM4183 | -168 | 3.3 | TTAATTTATATTGTTATCAATA |
| Citrobacter koseri ATCC BAA-895 | CKO_03906 | -166 | 3.3 | TATTTTTATTGTTATCAATAAG |
| Yersinia pestis KIM | y0015 | -254 | 3.3 | ATGAGTTATAGCCATTAAAAAT |
| Serratia proteamaculans 568 | Spro_4503 | -228 | 3.5 | TGTTGTTATGTTTATTAACCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3991 | -185 | 3.3 | TTTTTTAATTTTAATCTTCATT |
| Proteus mirabilis HI4320 | PMI2764 | -68 | 3.7 | ATTTTTGATTTTTGTAAAAACT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4396 | -65 | 3.8 | GTTTTTGATTTATTTTAAATAT |
|
Position: -79
Score: 3.8 Sequence: TTTTTCGAGGCTTTTCGCAATT
Locus tag: XBJ1_4039
|
||||
| XBJ1_4039 | -79 | 3.8 | TTTTTCGAGGCTTTTCGCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malT | ||||
| Ortholog function: transcriptional regulator MalT | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3418 | -142 | 4.3 | AATTGTGACACAGTGCAAATTC |
| Salmonella typhimurium LT2 | STM3515 | -143 | 4.3 | AATTGTGACAGAGTGCAAATTC |
| Citrobacter koseri ATCC BAA-895 | CKO_04840 | -142 | 4.3 | AATTGTGACAGAGTGCAAATTC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03788 | -142 | 4.4 | ATTTGTGACATAGAGCAAATTC |
| Enterobacter sp. 638 | Ent638_3831 | -142 | 4.6 | AATTGTGACAGAGTGCAAATTA |
| Yersinia pestis KIM | y3900 | -202 | 4.6 | AATTGTGATCCGTAGCAACTTA |
| Serratia proteamaculans 568 | Spro_4637 | -203 | 4 | AAGTGTGATCAATAGCAATATA |
| Edwardsiella tarda EIB202 | ETAE_3303 | -212 | 3.8 | AAATGTGATCAGCCGCAATTTC |
|
Position: -151
Score: 3 Sequence: TTTTGGTATGATTATAATCTAT
Position: -142
Score: 3.1 Sequence: GATTATAATCTATATAAAATTC
Position: -94
Score: 3.1 Sequence: ATATGTTAAACTATTGACTTTA
Locus tag: XBJ1_4089
|
||||
| XBJ1_4089 | -151 | 3 | TTTTGGTATGATTATAATCTAT | |
| -142 | 3.1 | GATTATAATCTATATAAAATTC | ||
| -94 | 3.1 | ATATGTTAAACTATTGACTTTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: crp | ||||
| Ortholog function: cyclic AMP receptor protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3357 | -154 | 3.3 | TACATTGATGTACTGCATGTAT |
| -136 | 3.3 | GTATGCAAAGGACGTCACATTA | ||
| Salmonella typhimurium LT2 | STM3466 | -159 | 3.1 | TACATTGACGTACTGCATGTAT |
| Citrobacter koseri ATCC BAA-895 | CKO_04777 | -160 | 3.1 | TACATTGACGTACTGCATGTAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03743 | -158 | 3.3 | TACATTGATGTACTGCATGTAT |
| Enterobacter sp. 638 | Ent638_3784 | -128 | 2.9 | AAACATTACAGGCTGCAAACAT |
| Yersinia pestis KIM | y3956 | -309 | 3 | AATTTAGACTACCCTTTCATTT |
| Serratia proteamaculans 568 | Spro_4580 | -121 | 3.5 | ATTTATGACACGCCTCAAAACC |
| Proteus mirabilis HI4320 | PMI2820 | -135 | 3.3 | TATTATAATCTATTCCTTATTA |
|
Position: -35
Score: 4.6 Sequence: TTTTGTTATTGACCTCAAAAAT
Locus tag: XBJ1_4092
|
||||
| XBJ1_4092 | -35 | 4.6 | TTTTGTTATTGACCTCAAAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ppiA | ||||
| Ortholog function: Peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8) | ||||
| Yersinia pestis KIM | y3951 | -247 | 4.5 | AAATGAGATATTTCTCGCAAAA |
| -81 | 3.6 | AAATGTGCATTCTGTTACGTAA | ||
| Serratia proteamaculans 568 | Spro_4589 | -181 | 3.9 | ATGCGTGATGCAGTTGGCAAAA |
|
Position: -242
Score: 3.4 Sequence: TTGCAATATTTCCATCACATTT
Position: -213
Score: 3.9 Sequence: AAATCAGATCTCTATCAAAATA
Position: -118
Score: 4 Sequence: AGTTGTTATGTCGATCAAACCA
Locus tag: XBJ1_4108
|
||||
| XBJ1_4108 | -242 | 3.4 | TTGCAATATTTCCATCACATTT | |
| -213 | 3.9 | AAATCAGATCTCTATCAAAATA | ||
| -118 | 4 | AGTTGTTATGTCGATCAAACCA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lsrR | ||||
| Ortholog function: LsrR, transcriptional repressor of lsr operon | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1512 | -87 | 4.1 | AACTGTGGTTGCCATCACAGAT |
| Salmonella typhimurium LT2 | STM4073 | -161 | 3.6 | AACTCTCATCCAGATCACGTTT |
| -92 | 4 | TTTTGTGGCGTTAATCACGGTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03508 | -75 | 3.7 | TTTTGCCAGTCGGCTCACACTT |
| Enterobacter sp. 638 | Ent638_3537 | -122 | 3.4 | TTTATTGATTAGGATCCAATTC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3142 | -137 | 4.3 | AATTGTGATCTTGGCAATATTT |
|
Position: -91
Score: 3.6 Sequence: ATTTACGAGTCTCTTCGCAAAA
Locus tag: XBJ1_4196
|
||||
| XBJ1_4196 | -91 | 3.6 | ATTTACGAGTCTCTTCGCAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yifB | ||||
| Ortholog function: magnesium chelatase family protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3765 | -266 | 4.2 | TTTTATGATGCGTTTAATAATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04266 | -226 | 4.1 | TTATATGAAAAAAATCAAAAAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4230 | -144 | 3.9 | AATTGCGACCCATTACGCACAA |
| Edwardsiella tarda EIB202 | ETAE_0086 | -128 | 3.7 | TATTGTTAATGTGTTAATAATT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4686 | -268 | 3.7 | TAATTTAATTTAAATTTCAAAA |
|
Position: -39
Score: 3.9 Sequence: TAATGTGATTGGGTTACTACTA
Locus tag: XBJ1_4271
|
||||
| XBJ1_4271 | -39 | 3.9 | TAATGTGATTGGGTTACTACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argC | ||||
| Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) | ||||
| Salmonella typhimurium LT2 | STM4121 | -44 | 3.5 | AATTATGAATAAAAATACATTA |
| Citrobacter koseri ATCC BAA-895 | CKO_03036 | -110 | 4 | ATTTGTGAATAAAAATACATTA |
| Enterobacter sp. 638 | Ent638_4028 | -44 | 3.8 | AAATGTGAATAAAAATACACTA |
| Yersinia pestis KIM | y0310 | -43 | 3.7 | TTTATTGACATAAATAAAAATA |
| Serratia proteamaculans 568 | Spro_4781 | -167 | 4 | TATTGTGAATAAAAATACAATA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0192 | -159 | 3.5 | TATTTTGAATAAAAATACAATA |
| Edwardsiella tarda EIB202 | ETAE_3482 | -160 | 3.4 | AATTATGAATAAAAATACAATA |
| Proteus mirabilis HI4320 | PMI3237 | -57 | 3.6 | TTTTTTGAATAAAAATACATTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4744 | -59 | 3.6 | TTTTTTGAATAAAAATACATTA |
|
Position: -207
Score: 3.6 Sequence: ATTTGCGAAGTAACTCTGATAA
Position: -189
Score: 4.6 Sequence: ATAAATGATTCCTATCACATTT
Locus tag: XBJ1_4282
|
||||
| XBJ1_4282 | -207 | 3.6 | ATTTGCGAAGTAACTCTGATAA | |
| -189 | 4.6 | ATAAATGATTCCTATCACATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cytR | ||||
| Ortholog function: transcriptional repressor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3934 | -128 | 3.9 | AAATTCAATATTCATCACACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_03060 | -129 | 3.8 | AAATTAAATATCCATCACACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04229 | -162 | 3.6 | TCTTGCGAGCCGGATCGAAAAA |
| -143 | 3.9 | AAATTTAACAAGCATCACGTTT | ||
| Yersinia pestis KIM | y0297 | -177 | 3.7 | TTCTGCGAGCCAGTTCGAAAAA |
| -135 | 3.6 | TTATGCAAATTAGGTAACAAAT | ||
| Edwardsiella tarda EIB202 | ETAE_3434 | -258 | 4.2 | AAGTGCGATCGGGATCGAAAAA |
| -175 | 3.6 | ATATGTGATCATATACTCATCG | ||
| Proteus mirabilis HI4320 | PMI3218 | -207 | 4.3 | TTTTGCGAACTACCTCATAAAA |
| -189 | 3.9 | AAAAACGATTGGTATCACACTT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4760 | -213 | 4.2 | ATTTGCGAGCCATATCGAATAA |
| -195 | 4.6 | ATAAATGATTTATATCACACTT | ||