Propagation of Crp regulog to Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)
| Source regulog: | Crp - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) |
| Orthologous TF(s) | HDEF_0827 |
| Regulated genes | 60 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -45
Score: 4 Sequence: TTTTTTGTTGTGTTTCAACTTT
Locus tag: HDEF_0158
|
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| HDEF_0158 | -45 | 4 | TTTTTTGTTGTGTTTCAACTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: manY | ||||
| Ortholog function: PTS system, mannose/fructose/sorbose family, IIC subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1818 | -60 | 3.8 | TATTGTGTTGATTATCACTCAG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02334 | -163 | 3.8 | TTAACGGATCTTCATCACATTA |
| Enterobacter sp. 638 | Ent638_2387 | -166 | 3.8 | ATTACGGATCTTCATCACATAA |
| Yersinia pestis KIM | y2552 | -231 | 3.9 | ATAGATGAGCAATGTCACATAA |
| Edwardsiella tarda EIB202 | ETAE_1558 | -267 | 3.9 | ATTAACGATGGGCGTCACATAA |
|
Position: -200
Score: 3.6 Sequence: ATTTTTAAAATTTGTCAAAAAA
Locus tag: HDEF_0231
|
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| HDEF_0231 | -200 | 3.6 | ATTTTTAAAATTTGTCAAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lpxK | ||||
| Ortholog function: tetraacyldisaccharide 4'-kinase | ||||
| Salmonella typhimurium LT2 | STM0985 | -120 | 4.1 | TTTTTTGCTGCGTCTTACATTT |
| Proteus mirabilis HI4320 | PMI0719 | -212 | 3.6 | TTACGTGATCTTTCTCTATTTG |
| -152 | 3.6 | TTTTTAGAACAACTTCGCAAAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1631 | -230 | 3.7 | ATTTGATATCAGTATCGCAATG |
| -152 | 4.4 | ATTTGCGAAGCTGTTCGCATAT | ||
|
Position: -275
Score: 3.6 Sequence: TTTAATGAGTTAAATAAAATAA
Position: -88
Score: 5.2 Sequence: TTTTGTGATCTTTATCTCAAAT
Locus tag: HDEF_0236
|
||||
| HDEF_0236 | -275 | 3.6 | TTTAATGAGTTAAATAAAATAA | |
| -88 | 5.2 | TTTTGTGATCTTTATCTCAAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yifB | ||||
| Ortholog function: magnesium chelatase family protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3765 | -266 | 4.2 | TTTTATGATGCGTTTAATAATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04266 | -226 | 4.1 | TTATATGAAAAAAATCAAAAAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4230 | -144 | 3.9 | AATTGCGACCCATTACGCACAA |
| Edwardsiella tarda EIB202 | ETAE_0086 | -128 | 3.7 | TATTGTTAATGTGTTAATAATT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4686 | -268 | 3.7 | TAATTTAATTTAAATTTCAAAA |
|
Position: -39
Score: 4 Sequence: AATTTTTATTTAAATCGCCATT
Locus tag: HDEF_0296
|
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| HDEF_0296 | -39 | 4 | AATTTTTATTTAAATCGCCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: coaE | ||||
| Ortholog function: dephospho-CoA kinase | ||||
| Erwinia amylovora ATCC 49946 | EAM_0727 | -75 | 4.4 | TCGTGTGATCTGCGCCACATTA |
| Yersinia pestis KIM | y0757 | -259 | 3.8 | AAATGTGATCGGGCGTAAAACA |
| Serratia proteamaculans 568 | Spro_0774 | -158 | 3.8 | CAGTGTGACCGCCCGCTCATTT |
| Edwardsiella tarda EIB202 | ETAE_0650 | -272 | 4 | AAATGTGATCATACAAACGATT |
| Proteus mirabilis HI4320 | PMI2052 | -80 | 3.8 | TCTTGTGATAAAAATCAGTTTA |
|
Position: -41
Score: 3.6 Sequence: AAGTGTAATTTCATTATAATTT
Locus tag: HDEF_0324
|
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| HDEF_0324 | -41 | 3.6 | AAGTGTAATTTCATTATAATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ptsH | ||||
| Ortholog function: PTS system phosphocarrier protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2415 | -209 | 3.9 | TTTTATGATTTGGTTCAATTCT |
| Salmonella typhimurium LT2 | STM2431 | -209 | 4.4 | TTTTATGATTTGGTTCAAATCT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02762 | -206 | 4 | TTTTATGATTTGGTTCAAGTCT |
| Enterobacter sp. 638 | Ent638_2943 | -271 | 4.4 | TTTTGTGGTCCACTTCAAACTT |
| -144 | 4 | TTTTATGATTTGGTTCAAGTCT | ||
| Serratia proteamaculans 568 | Spro_3448 | -149 | 3.6 | TTTTTTGATCTGAAGTGCCAAA |
| Proteus mirabilis HI4320 | PMI1828 | -275 | 4.4 | TTTTGTGGTAGAGATCAAACTT |
| -115 | 3.6 | TAACGTAACATGGCTTATATTA | ||
|
Position: -96
Score: 4.9 Sequence: TAATTTGAGCCAGTTCACACTT
Locus tag: HDEF_0325
|
||||
| HDEF_0325 | -96 | 4.9 | TAATTTGAGCCAGTTCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: deaD | ||||
| Ortholog function: ATP-independent RNA helicase | ||||
| Salmonella typhimurium LT2 | STM3280.S | -154 | 3.9 | CTTTTTGATTGCCATCACCTTC |
| -99 | 4.4 | TACTTTGAGCCGGTTCACACTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04559 | -103 | 3.9 | CTTTTTGATTGCCATCACCTTC |
| -48 | 4.4 | TACTTTGAGCCGGTTCACACTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03570 | -154 | 3.8 | TTTTTTGCTTGCCATCACCTTC |
| -99 | 4.4 | TACTTTGAGCCGGTTCACACAT | ||
| Enterobacter sp. 638 | Ent638_3599 | -154 | 4.1 | TCTTATGATTGCCATCACCTTA |
| -99 | 4.4 | TACTTTGAGCCGGTTCACACTT | ||
| Erwinia amylovora ATCC 49946 | EAM_3065 | -99 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Yersinia pestis KIM | y0696 | -96 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Serratia proteamaculans 568 | Spro_0495 | -96 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0718 | -96 | 4.4 | CAATTTGAGCCGGTTCACACTT |
| Edwardsiella tarda EIB202 | ETAE_0411 | -96 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Proteus mirabilis HI4320 | PMI3424 | -80 | 5 | TAATTTGAGCCAGTTCACATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4523 | -95 | 5 | TAATTTGAGCCAGTTCACATTT |
|
Position: -125
Score: 4.4 Sequence: TAATATGATTTATATTAAATAT
Locus tag: HDEF_0454
|
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| HDEF_0454 | -125 | 4.4 | TAATATGATTTATATTAAATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ptsG | ||||
| Ortholog function: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1101 | -154 | 4.4 | AAACGTGATAGCCGTCAAACAA |
| Salmonella typhimurium LT2 | STM1203 | -155 | 4.4 | AAACGTGATAGCCGTCAAACAA |
| Citrobacter koseri ATCC BAA-895 | CKO_01957 | -229 | 4.4 | AAACGTGATAGCCGTCAAACAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01099 | -155 | 4.4 | AAACGTGATAGCCGTCAAACAA |
| Enterobacter sp. 638 | Ent638_1616 | -155 | 4.4 | AAACGTGATAGCCGTCAAACAA |
| Erwinia amylovora ATCC 49946 | EAM_1466 | -162 | 4.6 | AAACGTGATAGCCATCAAACAA |
| Yersinia pestis KIM | y1767 | -166 | 4.4 | AAACGTGACGGCAATCAAACAT |
| Serratia proteamaculans 568 | Spro_1914 | -164 | 4.4 | AAACGTGACTGTCATCAAACAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1805 | -162 | 4.6 | AAACGTGATAGCAATCAAACAT |
| Proteus mirabilis HI4320 | PMI2292 | -156 | 4.5 | AAACGTGACAGCTATCATATAT |
|
Position: -63
Score: 3.5 Sequence: TTTTGTGAGAGATAAAATCTAA
Locus tag: HDEF_0461
|
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| HDEF_0461 | -63 | 3.5 | TTTTGTGAGAGATAAAATCTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: clpS | ||||
| Ortholog function: ATP-dependent Clp protease adaptor protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0881 | -164 | 4 | AAATTTGAAGCAGTTAACGCTA |
| Salmonella typhimurium LT2 | STM0944 | -164 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -104 | 3.6 | AGATGTTAGTTATCTATCAATT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02199 | -164 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -135 | 4.2 | TAATGTGACAGATGTCGCGGAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00914 | -167 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -77 | 4.3 | ATTTGTGATGAGCATAACCTCT | ||
| Enterobacter sp. 638 | Ent638_1398 | -161 | 3.9 | ATTTTTGAAGCAGTTAACGCTA |
| -132 | 3.8 | GAATGTGACAGATATCGCGGAT | ||
| Erwinia amylovora ATCC 49946 | EAM_1320 | -161 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -132 | 4.5 | TTTTGTGATAGAGGTCGCTATT | ||
| Serratia proteamaculans 568 | Spro_1673 | -176 | 3.6 | AAGTTTGAAGCAGGTAACGCTA |
| Edwardsiella tarda EIB202 | ETAE_2208 | -164 | 3.8 | AAGTTTGAGGCAGTTAACGCAA |
| -144 | 3.6 | AATTGTGCGGCAGTGCGCTTTT | ||
| Proteus mirabilis HI4320 | PMI0689 | -268 | 3.7 | TGTCTTTATTTACTTAACATTA |
| -148 | 4.1 | AACTTTGATGTAGCTAACGCTT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1593 | -170 | 4.3 | AAGTTTGATATAGATAACGATA |
|
Position: -22
Score: 3.6 Sequence: TTTTGTTATTTAAGGTAAAAAA
Locus tag: HDEF_0506
|
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| HDEF_0506 | -22 | 3.6 | TTTTGTTATTTAAGGTAAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: metK | ||||
| Ortholog function: S-adenosylmethionine synthetase (EC 2.5.1.6) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2942 | -200 | 3.6 | GAATGAGACACGATTCAAAAAA |
| Salmonella typhimurium LT2 | STM3090 | -200 | 3.9 | CATTGCGACGGCCTTCAAAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04317 | -199 | 3.5 | CAACGAGAGTTGATTCAAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03375 | -199 | 4.3 | AAATGCGACCGCCATCAAAAAA |
| Enterobacter sp. 638 | Ent638_3346 | -199 | 4.4 | TAATGCGAGCGATATCAAAAAA |
| Proteus mirabilis HI4320 | PMI2095 | -275 | 3.5 | CACTGTGATTCAGTTTTCACAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3683 | -205 | 3.3 | GTTTATACTCGCAATCACATAA |
|
Position: -225
Score: 5.1 Sequence: ATATGCGATCTCCTTCACATAA
Position: -173
Score: 5.3 Sequence: TTTTGTGATACTCATCACAGAT
Position: -145
Score: 3.4 Sequence: AATAGCCATTTCGATAACAAAA
Position: -47
Score: 3.2 Sequence: GGTTGAAATTGATTTCAAATAT
Locus tag: HDEF_0610
|
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| HDEF_0610 | -225 | 5.1 | ATATGCGATCTCCTTCACATAA | |
| -173 | 5.3 | TTTTGTGATACTCATCACAGAT | ||
| -145 | 3.4 | AATAGCCATTTCGATAACAAAA | ||
| -47 | 3.2 | GGTTGAAATTGATTTCAAATAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ppdD | ||||
| Ortholog function: predicted major pilin subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0108 | -145 | 3.2 | CTTCGTAACGCCTCGCAAATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_03268 | -146 | 3.4 | TTTTTCGAGCGGCCTCGCAAAC |
| Yersinia pestis KIM | y0761 | -123 | 3.8 | TTACGTTATTGCAATAACCTAA |
| Proteus mirabilis HI4320 | PMI2049 | -146 | 4.3 | TAATGCGAACTTGCTCTCAATA |
|
Position: -211
Score: 3.1 Sequence: AGATGGTGTTCGCGTCACAAAT
Position: -192
Score: 3 Sequence: AATGGTGAGTCAAAGCCAAGAT
Position: -146
Score: 3.5 Sequence: TGATTTGATATTAAAAATATTT
Position: -129
Score: 4.1 Sequence: TATTTTAATGAAAATCATAAAA
Position: -87
Score: 3.3 Sequence: GAATTTGATGTTAAACTAATTA
Position: -7
Score: 3.2 Sequence: ATAAGTTATGTTGCTCTCAGCG
Position: -2
Score: 3.1 Sequence: TTATGTTGCTCTCAGCGCAAAA
Locus tag: HDEF_0827
|
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| HDEF_0827 | -211 | 3.1 | AGATGGTGTTCGCGTCACAAAT | |
| -192 | 3 | AATGGTGAGTCAAAGCCAAGAT | ||
| -146 | 3.5 | TGATTTGATATTAAAAATATTT | ||
| -129 | 4.1 | TATTTTAATGAAAATCATAAAA | ||
| -87 | 3.3 | GAATTTGATGTTAAACTAATTA | ||
| -7 | 3.2 | ATAAGTTATGTTGCTCTCAGCG | ||
| -2 | 3.1 | TTATGTTGCTCTCAGCGCAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: crp | ||||
| Ortholog function: cyclic AMP receptor protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3357 | -154 | 3.3 | TACATTGATGTACTGCATGTAT |
| -136 | 3.3 | GTATGCAAAGGACGTCACATTA | ||
| Salmonella typhimurium LT2 | STM3466 | -159 | 3.1 | TACATTGACGTACTGCATGTAT |
| Citrobacter koseri ATCC BAA-895 | CKO_04777 | -160 | 3.1 | TACATTGACGTACTGCATGTAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03743 | -158 | 3.3 | TACATTGATGTACTGCATGTAT |
| Enterobacter sp. 638 | Ent638_3784 | -128 | 2.9 | AAACATTACAGGCTGCAAACAT |
| Yersinia pestis KIM | y3956 | -309 | 3 | AATTTAGACTACCCTTTCATTT |
| Serratia proteamaculans 568 | Spro_4580 | -121 | 3.5 | ATTTATGACACGCCTCAAAACC |
| Proteus mirabilis HI4320 | PMI2820 | -135 | 3.3 | TATTATAATCTATTCCTTATTA |
|
Position: -124
Score: 3.3 Sequence: TACTGCTATCTGTTCTACATTA
Position: -21
Score: 3.6 Sequence: AAAAGAGATAGGGATCAATTTA
Locus tag: HDEF_1521
|
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| HDEF_1521 | -124 | 3.3 | TACTGCTATCTGTTCTACATTA | |
| -21 | 3.6 | AAAAGAGATAGGGATCAATTTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hupA | ||||
| Ortholog function: DNA-binding protein HU-alpha (HU-2) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4000 | -179 | 3.4 | AAACGTGATTTAACGCCTGATT |
| Citrobacter koseri ATCC BAA-895 | CKO_02986 | -179 | 3.4 | AAACGTGATTTAACGCCTGATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04382 | -179 | 3.4 | AAACGTGATTTACCGCCTGAAT |
| Enterobacter sp. 638 | Ent638_0213 | -179 | 3.5 | AAACGTGATTTAACGCCTGTTT |
| Yersinia pestis KIM | y0499 | -181 | 3.4 | AAACGTGATTTAACGCCTGATT |
| Serratia proteamaculans 568 | Spro_0290 | -181 | 3.4 | AAACGTGATTTAACGCCTCATT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0238 | -197 | 3.3 | AAACGTGATTTAAGGCCTGAAA |
| Edwardsiella tarda EIB202 | ETAE_0183 | -182 | 3.3 | AAACGTGATTTAACACCTGATT |
| Proteus mirabilis HI4320 | PMI2771 | -183 | 3.7 | AAACGTGATTTAGTGCTTGAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0492 | -179 | 3.4 | AAACGTGATTTAATGCTTTAAA |
|
Position: -194
Score: 4.1 Sequence: TTTTTTAATAGTCATAACATAT
Locus tag: HDEF_1595
|
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| HDEF_1595 | -194 | 4.1 | TTTTTTAATAGTCATAACATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdaC | ||||
| Ortholog function: Serine transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2796 | -179 | 4.2 | ATTTGAGATCAAGATCACTGAT |
| Salmonella typhimurium LT2 | STM2970 | -176 | 4.2 | ATTTGAGATCGGGATCACTGAT |
| Citrobacter koseri ATCC BAA-895 | CKO_04152 | -176 | 4.1 | ATTTGGGATCGCGATCACTGAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03139 | -158 | 4.2 | ATTTGAGATCGCGATCACTGAT |
| Enterobacter sp. 638 | Ent638_3249 | -176 | 4.1 | ATTTGGGATCAGGATCACTGAT |
| Erwinia amylovora ATCC 49946 | EAM_1294 | -300 | 3.6 | ATTTGTTAAAAATCGCAAAAAA |
| -180 | 3.9 | AAATGTGATTCCGATCACCGGC | ||
| Yersinia pestis KIM | y2862 | -286 | 4.3 | AATTGAGATCACGATCACGGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3158 | -195 | 3.7 | TTCTGTGATCGCCTCAATATTA |
| Proteus mirabilis HI4320 | PMI0672 | -283 | 4.3 | ATTTGAGATGGTGATCACGGTA |
|
Position: -107
Score: 4.1 Sequence: AAAAATGATTCCAATCAAAATA
Locus tag: HDEF_1883
|
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| HDEF_1883 | -107 | 4.1 | AAAAATGATTCCAATCAAAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdhC | ||||
| Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit | ||||
| Enterobacter sp. 638 | Ent638_1222 | -295 | 4.2 | TATCGTGACTGTGATCACTGTT |
| Erwinia amylovora ATCC 49946 | EAM_1168 | -249 | 4.4 | AAGTGTGATTTTTGTCACTGTT |
| -190 | 3.6 | TAATGAGATTGTGATCCACTTA | ||
| Yersinia pestis KIM | y3071 | -254 | 4.5 | AATCGTGATCCTAATCACTGTT |
| Serratia proteamaculans 568 | Spro_1263 | -253 | 4.3 | ATCCGTGATCTAAATCACTGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1357 | -265 | 4.7 | ATTCGTGATCTAAATCACTGTT |
| Edwardsiella tarda EIB202 | ETAE_2588 | -261 | 3.7 | ATGCGTGACCGTTGTCACTGTT |
| Proteus mirabilis HI4320 | PMI0565 | -264 | 4.3 | AAAAGTGATCCCTCTCACTGTT |
|
Position: -56
Score: 3.9 Sequence: TGTTTCGATTTTTAGCACAATA
Locus tag: HDEF_1886
|
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| HDEF_1886 | -56 | 3.9 | TGTTTCGATTTTTAGCACAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdhB | ||||
| Ortholog function: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) | ||||
| Enterobacter sp. 638 | Ent638_1225 | -295 | 4.2 | TATCGTGACTGTGATCACTGTT |
| Erwinia amylovora ATCC 49946 | EAM_1171 | -249 | 4.4 | AAGTGTGATTTTTGTCACTGTT |
| -190 | 3.6 | TAATGAGATTGTGATCCACTTA | ||
| Yersinia pestis KIM | y3068 | -254 | 4.5 | AATCGTGATCCTAATCACTGTT |
| Serratia proteamaculans 568 | Spro_1266 | -253 | 4.3 | ATCCGTGATCTAAATCACTGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1360 | -265 | 4.7 | ATTCGTGATCTAAATCACTGTT |
| Edwardsiella tarda EIB202 | ETAE_2585 | -261 | 3.7 | ATGCGTGACCGTTGTCACTGTT |
| Proteus mirabilis HI4320 | PMI0568 | -264 | 4.3 | AAAAGTGATCCCTCTCACTGTT |
|
Position: -273
Score: 3.9 Sequence: TTTTTTAATCGATTTAAAATAT
Locus tag: HDEF_1900
|
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| HDEF_1900 | -273 | 3.9 | TTTTTTAATCGATTTAAAATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: thrA | ||||
| Ortholog function: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0002 | -83 | 3.8 | TTTATTGACTTAGGTCACTAAA |
| Salmonella typhimurium LT2 | STM0002 | -103 | 4.2 | GAATGTGATCAATTTAAAAATT |
| Citrobacter koseri ATCC BAA-895 | CKO_03385 | -249 | 4.1 | GAATGTGATCAAATTAAAAATT |
| Enterobacter sp. 638 | Ent638_0564 | -252 | 4.4 | AATTGTGATCAAATTAGAAATT |
| Proteus mirabilis HI4320 | PMI0001 | -232 | 3.9 | AAATTTGACATCTCTCTCGCTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0563 | -223 | 4.2 | ATGTTTGACTTTGCGCACAAAT |
|
Position: -1
Score: 3.7 Sequence: AATGGTGATTGAAATTAAAATG
Locus tag: HDEF_2043
|
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| HDEF_2043 | -1 | 3.7 | AATGGTGATTGAAATTAAAATG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aceF | ||||
| Ortholog function: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0115 | -156 | 3.7 | AAACGTTATATATGTCAAGTTG |
| -131 | 3.8 | AAATGTGCACAGTTTCATGATT | ||
| Salmonella typhimurium LT2 | STM0153 | -157 | 3.5 | AAACATGATTTCTGTAAAATTG |
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| -79 | 3 | CTTATTAAGCTTTCTCACGAAA | ||
| -54 | 3.4 | TAATGGGACAGGTTCCAGATAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03258 | -180 | 3.2 | ATTTGTGCATAGTTACATCTTT |
| -157 | 3.1 | AAACGTTATTTCTGTAATCTTG | ||
| -148 | 3.3 | TTCTGTAATCTTGTTAAAATGT | ||
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00119 | -155 | 3.2 | AAATGTTATTTCTGTAAGGTTG |
| -118 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Enterobacter sp. 638 | Ent638_0661 | -120 | 3.2 | TTTACTGATTTCAATCAAAACC |
| -77 | 3.1 | TATTGTATTTTCTGGCGAAAAT | ||
| -68 | 3 | TTTAGCGATACGAATATGAAAT | ||
| Erwinia amylovora ATCC 49946 | EAM_0748 | -198 | 3.3 | TAAAGCGATCGGATTTAACAAT |
| Yersinia pestis KIM | y0768 | -151 | 4.2 | AAATGTGCTGGGTTTCATGATT |
| -139 | 3.3 | TTTCATGATTTCGGTCAAGGTC | ||
| -74 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Serratia proteamaculans 568 | Spro_4010 | -132 | 3.1 | AAATGTGCGGGTAACCTGATTT |
| -56 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3788 | -120 | 3.7 | ATTGGTGATTTAGCTCAAGGTC |
| -55 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Edwardsiella tarda EIB202 | ETAE_0660 | -143 | 3.2 | TTTCATGATTTACATCAATAGT |
| Proteus mirabilis HI4320 | PMI2045 | -218 | 3.1 | TGTTTTTAATCTTTTCTAATAA |
| -199 | 4.4 | TAATGCGATCTAGTTATCAAAT | ||
| -181 | 4.2 | AAATTTGATGAATTTATCAAAT | ||
| -158 | 3 | ATTTGTTAAAATTTGCAGGTTT | ||
| -138 | 3.9 | TTTTATGATTTCGCTCAACAAC | ||
| -95 | 3.1 | CTTTGTTACTTTATTATCCATT | ||
| -89 | 3.1 | TACTTTATTATCCATTACATTA | ||
|
Position: -116
Score: 3.2 Sequence: ATGAGTGAACCACTTTAGAGAT
Position: -103
Score: 3.1 Sequence: TTTAGAGATCCTGTTTAGAGAA
Position: -43
Score: 3.6 Sequence: AAATGTCGTTTAACTCAAAAAA
Locus tag: HDEF_2044
|
||||
| HDEF_2044 | -116 | 3.2 | ATGAGTGAACCACTTTAGAGAT | |
| -103 | 3.1 | TTTAGAGATCCTGTTTAGAGAA | ||
| -43 | 3.6 | AAATGTCGTTTAACTCAAAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aceE | ||||
| Ortholog function: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0114 | -156 | 3.7 | AAACGTTATATATGTCAAGTTG |
| -131 | 3.8 | AAATGTGCACAGTTTCATGATT | ||
| Salmonella typhimurium LT2 | STM0152 | -157 | 3.5 | AAACATGATTTCTGTAAAATTG |
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| -79 | 3 | CTTATTAAGCTTTCTCACGAAA | ||
| -54 | 3.4 | TAATGGGACAGGTTCCAGATAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03259 | -180 | 3.2 | ATTTGTGCATAGTTACATCTTT |
| -157 | 3.1 | AAACGTTATTTCTGTAATCTTG | ||
| -148 | 3.3 | TTCTGTAATCTTGTTAAAATGT | ||
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00118 | -155 | 3.2 | AAATGTTATTTCTGTAAGGTTG |
| -118 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Enterobacter sp. 638 | Ent638_0660 | -120 | 3.2 | TTTACTGATTTCAATCAAAACC |
| -77 | 3.1 | TATTGTATTTTCTGGCGAAAAT | ||
| -68 | 3 | TTTAGCGATACGAATATGAAAT | ||
| Erwinia amylovora ATCC 49946 | EAM_0747 | -198 | 3.3 | TAAAGCGATCGGATTTAACAAT |
| Yersinia pestis KIM | y0767 | -151 | 4.2 | AAATGTGCTGGGTTTCATGATT |
| -139 | 3.3 | TTTCATGATTTCGGTCAAGGTC | ||
| -74 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Serratia proteamaculans 568 | Spro_4011 | -132 | 3.1 | AAATGTGCGGGTAACCTGATTT |
| -56 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3789 | -120 | 3.7 | ATTGGTGATTTAGCTCAAGGTC |
| -55 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Edwardsiella tarda EIB202 | ETAE_0659 | -143 | 3.2 | TTTCATGATTTACATCAATAGT |
| Proteus mirabilis HI4320 | PMI2046 | -218 | 3.1 | TGTTTTTAATCTTTTCTAATAA |
| -199 | 4.4 | TAATGCGATCTAGTTATCAAAT | ||
| -181 | 4.2 | AAATTTGATGAATTTATCAAAT | ||
| -158 | 3 | ATTTGTTAAAATTTGCAGGTTT | ||
| -138 | 3.9 | TTTTATGATTTCGCTCAACAAC | ||
| -95 | 3.1 | CTTTGTTACTTTATTATCCATT | ||
| -89 | 3.1 | TACTTTATTATCCATTACATTA | ||
|
Position: -301
Score: 4.1 Sequence: TGATGCGACCAATTTCACGTAA
Locus tag: HDEF_2310
|
||||
| HDEF_2310 | -301 | 4.1 | TGATGCGACCAATTTCACGTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yigL | ||||
| Ortholog function: Hydrolase (HAD superfamily) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00167 | -60 | 3.8 | TATTGTGTCAGGCATCATAAAG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04322 | -56 | 3.8 | TTGTGTGATACACGGTAAAAAA |
| Enterobacter sp. 638 | Ent638_3970 | -56 | 4.3 | TTTTGTGATGCGTCACGAAAAA |
| Yersinia pestis KIM | y0401 | -144 | 4.8 | AGTTGTGCTATGGCTCACAAAA |
| Serratia proteamaculans 568 | Spro_0197 | -88 | 3.8 | TTGTAAGAATTGAATCACAATA |
| -53 | 4.2 | TCTTGTGCCAGAGGTCACATTT | ||
| Edwardsiella tarda EIB202 | ETAE_3342 | -217 | 3.9 | CGGTGTGATAATCCTCAAACTT |
|
Position: -52
Score: 4 Sequence: TAATGTCATTTAAAGCATATTT
Locus tag: HDEF_2337
|
||||
| HDEF_2337 | -52 | 4 | TAATGTCATTTAAAGCATATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpA | ||||
| Ortholog function: ATP synthase subunit A | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3734 | -263 | 4.8 | ATATGTGATCTGAAGCACGCTT |
| Salmonella typhimurium LT2 | STM3867 | -262 | 4.6 | ATGTGTGATCTGGTGCACGCTT |
| -211 | 4.1 | TTTTGTACGATCGTTCACACTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00073 | -262 | 4.7 | ATATGTGATCCGAAGCACGCTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04139 | -262 | 4.7 | TTATGTGATCTGATGCACGCTT |
| Enterobacter sp. 638 | Ent638_4130 | -261 | 4.8 | TTTTGTGATCTCGTGCACGCTT |
| Erwinia amylovora ATCC 49946 | EAM_3476 | -264 | 4.4 | ATTTGTGATCGTGGACACGCTT |
| Yersinia pestis KIM | y4137 | -263 | 5.4 | TTATGTGATGTATTTCACGTTT |
| Serratia proteamaculans 568 | Spro_0006 | -265 | 4.4 | TATTGTGAGCAACTACACGTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4514 | -254 | 5 | TTATGTGAGTCACATCACAGAT |
| Edwardsiella tarda EIB202 | ETAE_3531 | -297 | 3.7 | AATCGTGAAAATATTTAAATTA |
| Proteus mirabilis HI4320 | PMI3062 | -259 | 5 | TTGTGTGTTCTAGATCACATTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0042 | -265 | 5.7 | TTATGTGATTTAAATCACATTT |