Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)

Reference regulog properties
Source regulog: Crp - Enterobacteriales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)
Orthologous TF(s) HDEF_0827
Regulated genes 60
Built upon 2301 sites [see more]
Predicted regulatory interactions in Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)
Locus tag Position Score Sequence
Position: -45
Score: 4
Sequence: TTTTTTGTTGTGTTTCAACTTT
Locus tag: HDEF_0158
HDEF_0158 -45 4 TTTTTTGTTGTGTTTCAACTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: manY
Ortholog function: PTS system, mannose/fructose/sorbose family, IIC subunit
Escherichia coli str. K-12 substr. MG1655 b1818 -60 3.8 TATTGTGTTGATTATCACTCAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02334 -163 3.8 TTAACGGATCTTCATCACATTA
Enterobacter sp. 638 Ent638_2387 -166 3.8 ATTACGGATCTTCATCACATAA
Yersinia pestis KIM y2552 -231 3.9 ATAGATGAGCAATGTCACATAA
Edwardsiella tarda EIB202 ETAE_1558 -267 3.9 ATTAACGATGGGCGTCACATAA
Position: -200
Score: 3.6
Sequence: ATTTTTAAAATTTGTCAAAAAA
Locus tag: HDEF_0231
HDEF_0231 -200 3.6 ATTTTTAAAATTTGTCAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lpxK
Ortholog function: tetraacyldisaccharide 4'-kinase
Salmonella typhimurium LT2 STM0985 -120 4.1 TTTTTTGCTGCGTCTTACATTT
Proteus mirabilis HI4320 PMI0719 -212 3.6 TTACGTGATCTTTCTCTATTTG
-152 3.6 TTTTTAGAACAACTTCGCAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1631 -230 3.7 ATTTGATATCAGTATCGCAATG
-152 4.4 ATTTGCGAAGCTGTTCGCATAT
Position: -275
Score: 3.6
Sequence: TTTAATGAGTTAAATAAAATAA
Position: -88
Score: 5.2
Sequence: TTTTGTGATCTTTATCTCAAAT
Locus tag: HDEF_0236
HDEF_0236 -275 3.6 TTTAATGAGTTAAATAAAATAA
-88 5.2 TTTTGTGATCTTTATCTCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yifB
Ortholog function: magnesium chelatase family protein
Escherichia coli str. K-12 substr. MG1655 b3765 -266 4.2 TTTTATGATGCGTTTAATAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04266 -226 4.1 TTATATGAAAAAAATCAAAAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4230 -144 3.9 AATTGCGACCCATTACGCACAA
Edwardsiella tarda EIB202 ETAE_0086 -128 3.7 TATTGTTAATGTGTTAATAATT
Photorhabdus luminescens subsp. laumondii TTO1 plu4686 -268 3.7 TAATTTAATTTAAATTTCAAAA
Position: -39
Score: 4
Sequence: AATTTTTATTTAAATCGCCATT
Locus tag: HDEF_0296
HDEF_0296 -39 4 AATTTTTATTTAAATCGCCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: coaE
Ortholog function: dephospho-CoA kinase
Erwinia amylovora ATCC 49946 EAM_0727 -75 4.4 TCGTGTGATCTGCGCCACATTA
Yersinia pestis KIM y0757 -259 3.8 AAATGTGATCGGGCGTAAAACA
Serratia proteamaculans 568 Spro_0774 -158 3.8 CAGTGTGACCGCCCGCTCATTT
Edwardsiella tarda EIB202 ETAE_0650 -272 4 AAATGTGATCATACAAACGATT
Proteus mirabilis HI4320 PMI2052 -80 3.8 TCTTGTGATAAAAATCAGTTTA
Position: -41
Score: 3.6
Sequence: AAGTGTAATTTCATTATAATTT
Locus tag: HDEF_0324
HDEF_0324 -41 3.6 AAGTGTAATTTCATTATAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ptsH
Ortholog function: PTS system phosphocarrier protein
Escherichia coli str. K-12 substr. MG1655 b2415 -209 3.9 TTTTATGATTTGGTTCAATTCT
Salmonella typhimurium LT2 STM2431 -209 4.4 TTTTATGATTTGGTTCAAATCT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02762 -206 4 TTTTATGATTTGGTTCAAGTCT
Enterobacter sp. 638 Ent638_2943 -271 4.4 TTTTGTGGTCCACTTCAAACTT
-144 4 TTTTATGATTTGGTTCAAGTCT
Serratia proteamaculans 568 Spro_3448 -149 3.6 TTTTTTGATCTGAAGTGCCAAA
Proteus mirabilis HI4320 PMI1828 -275 4.4 TTTTGTGGTAGAGATCAAACTT
-115 3.6 TAACGTAACATGGCTTATATTA
Position: -96
Score: 4.9
Sequence: TAATTTGAGCCAGTTCACACTT
Locus tag: HDEF_0325
HDEF_0325 -96 4.9 TAATTTGAGCCAGTTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deaD
Ortholog function: ATP-independent RNA helicase
Salmonella typhimurium LT2 STM3280.S -154 3.9 CTTTTTGATTGCCATCACCTTC
-99 4.4 TACTTTGAGCCGGTTCACACTT
Citrobacter koseri ATCC BAA-895 CKO_04559 -103 3.9 CTTTTTGATTGCCATCACCTTC
-48 4.4 TACTTTGAGCCGGTTCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03570 -154 3.8 TTTTTTGCTTGCCATCACCTTC
-99 4.4 TACTTTGAGCCGGTTCACACAT
Enterobacter sp. 638 Ent638_3599 -154 4.1 TCTTATGATTGCCATCACCTTA
-99 4.4 TACTTTGAGCCGGTTCACACTT
Erwinia amylovora ATCC 49946 EAM_3065 -99 4.8 TAATTTGAGCCGGTTCACACTT
Yersinia pestis KIM y0696 -96 4.8 TAATTTGAGCCGGTTCACACTT
Serratia proteamaculans 568 Spro_0495 -96 4.8 TAATTTGAGCCGGTTCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0718 -96 4.4 CAATTTGAGCCGGTTCACACTT
Edwardsiella tarda EIB202 ETAE_0411 -96 4.8 TAATTTGAGCCGGTTCACACTT
Proteus mirabilis HI4320 PMI3424 -80 5 TAATTTGAGCCAGTTCACATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu4523 -95 5 TAATTTGAGCCAGTTCACATTT
Position: -125
Score: 4.4
Sequence: TAATATGATTTATATTAAATAT
Locus tag: HDEF_0454
HDEF_0454 -125 4.4 TAATATGATTTATATTAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ptsG
Ortholog function: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655 b1101 -154 4.4 AAACGTGATAGCCGTCAAACAA
Salmonella typhimurium LT2 STM1203 -155 4.4 AAACGTGATAGCCGTCAAACAA
Citrobacter koseri ATCC BAA-895 CKO_01957 -229 4.4 AAACGTGATAGCCGTCAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01099 -155 4.4 AAACGTGATAGCCGTCAAACAA
Enterobacter sp. 638 Ent638_1616 -155 4.4 AAACGTGATAGCCGTCAAACAA
Erwinia amylovora ATCC 49946 EAM_1466 -162 4.6 AAACGTGATAGCCATCAAACAA
Yersinia pestis KIM y1767 -166 4.4 AAACGTGACGGCAATCAAACAT
Serratia proteamaculans 568 Spro_1914 -164 4.4 AAACGTGACTGTCATCAAACAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1805 -162 4.6 AAACGTGATAGCAATCAAACAT
Proteus mirabilis HI4320 PMI2292 -156 4.5 AAACGTGACAGCTATCATATAT
Position: -63
Score: 3.5
Sequence: TTTTGTGAGAGATAAAATCTAA
Locus tag: HDEF_0461
HDEF_0461 -63 3.5 TTTTGTGAGAGATAAAATCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: clpS
Ortholog function: ATP-dependent Clp protease adaptor protein
Escherichia coli str. K-12 substr. MG1655 b0881 -164 4 AAATTTGAAGCAGTTAACGCTA
Salmonella typhimurium LT2 STM0944 -164 4 AAATTTGAAGCAGTTAACGCTA
-104 3.6 AGATGTTAGTTATCTATCAATT
Citrobacter koseri ATCC BAA-895 CKO_02199 -164 4 AAATTTGAAGCAGTTAACGCTA
-135 4.2 TAATGTGACAGATGTCGCGGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00914 -167 4 AAATTTGAAGCAGTTAACGCTA
-77 4.3 ATTTGTGATGAGCATAACCTCT
Enterobacter sp. 638 Ent638_1398 -161 3.9 ATTTTTGAAGCAGTTAACGCTA
-132 3.8 GAATGTGACAGATATCGCGGAT
Erwinia amylovora ATCC 49946 EAM_1320 -161 4 AAATTTGAAGCAGTTAACGCTA
-132 4.5 TTTTGTGATAGAGGTCGCTATT
Serratia proteamaculans 568 Spro_1673 -176 3.6 AAGTTTGAAGCAGGTAACGCTA
Edwardsiella tarda EIB202 ETAE_2208 -164 3.8 AAGTTTGAGGCAGTTAACGCAA
-144 3.6 AATTGTGCGGCAGTGCGCTTTT
Proteus mirabilis HI4320 PMI0689 -268 3.7 TGTCTTTATTTACTTAACATTA
-148 4.1 AACTTTGATGTAGCTAACGCTT
Photorhabdus luminescens subsp. laumondii TTO1 plu1593 -170 4.3 AAGTTTGATATAGATAACGATA
Position: -22
Score: 3.6
Sequence: TTTTGTTATTTAAGGTAAAAAA
Locus tag: HDEF_0506
HDEF_0506 -22 3.6 TTTTGTTATTTAAGGTAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: metK
Ortholog function: S-adenosylmethionine synthetase (EC 2.5.1.6)
Escherichia coli str. K-12 substr. MG1655 b2942 -200 3.6 GAATGAGACACGATTCAAAAAA
Salmonella typhimurium LT2 STM3090 -200 3.9 CATTGCGACGGCCTTCAAAAAA
Citrobacter koseri ATCC BAA-895 CKO_04317 -199 3.5 CAACGAGAGTTGATTCAAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03375 -199 4.3 AAATGCGACCGCCATCAAAAAA
Enterobacter sp. 638 Ent638_3346 -199 4.4 TAATGCGAGCGATATCAAAAAA
Proteus mirabilis HI4320 PMI2095 -275 3.5 CACTGTGATTCAGTTTTCACAG
Photorhabdus luminescens subsp. laumondii TTO1 plu3683 -205 3.3 GTTTATACTCGCAATCACATAA
Position: -225
Score: 5.1
Sequence: ATATGCGATCTCCTTCACATAA
Position: -173
Score: 5.3
Sequence: TTTTGTGATACTCATCACAGAT
Position: -145
Score: 3.4
Sequence: AATAGCCATTTCGATAACAAAA
Position: -47
Score: 3.2
Sequence: GGTTGAAATTGATTTCAAATAT
Locus tag: HDEF_0610
HDEF_0610 -225 5.1 ATATGCGATCTCCTTCACATAA
-173 5.3 TTTTGTGATACTCATCACAGAT
-145 3.4 AATAGCCATTTCGATAACAAAA
-47 3.2 GGTTGAAATTGATTTCAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppdD
Ortholog function: predicted major pilin subunit
Escherichia coli str. K-12 substr. MG1655 b0108 -145 3.2 CTTCGTAACGCCTCGCAAATTT
Citrobacter koseri ATCC BAA-895 CKO_03268 -146 3.4 TTTTTCGAGCGGCCTCGCAAAC
Yersinia pestis KIM y0761 -123 3.8 TTACGTTATTGCAATAACCTAA
Proteus mirabilis HI4320 PMI2049 -146 4.3 TAATGCGAACTTGCTCTCAATA
Position: -211
Score: 3.1
Sequence: AGATGGTGTTCGCGTCACAAAT
Position: -192
Score: 3
Sequence: AATGGTGAGTCAAAGCCAAGAT
Position: -146
Score: 3.5
Sequence: TGATTTGATATTAAAAATATTT
Position: -129
Score: 4.1
Sequence: TATTTTAATGAAAATCATAAAA
Position: -87
Score: 3.3
Sequence: GAATTTGATGTTAAACTAATTA
Position: -7
Score: 3.2
Sequence: ATAAGTTATGTTGCTCTCAGCG
Position: -2
Score: 3.1
Sequence: TTATGTTGCTCTCAGCGCAAAA
Locus tag: HDEF_0827
HDEF_0827 -211 3.1 AGATGGTGTTCGCGTCACAAAT
-192 3 AATGGTGAGTCAAAGCCAAGAT
-146 3.5 TGATTTGATATTAAAAATATTT
-129 4.1 TATTTTAATGAAAATCATAAAA
-87 3.3 GAATTTGATGTTAAACTAATTA
-7 3.2 ATAAGTTATGTTGCTCTCAGCG
-2 3.1 TTATGTTGCTCTCAGCGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: crp
Ortholog function: cyclic AMP receptor protein
Escherichia coli str. K-12 substr. MG1655 b3357 -154 3.3 TACATTGATGTACTGCATGTAT
-136 3.3 GTATGCAAAGGACGTCACATTA
Salmonella typhimurium LT2 STM3466 -159 3.1 TACATTGACGTACTGCATGTAT
Citrobacter koseri ATCC BAA-895 CKO_04777 -160 3.1 TACATTGACGTACTGCATGTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03743 -158 3.3 TACATTGATGTACTGCATGTAT
Enterobacter sp. 638 Ent638_3784 -128 2.9 AAACATTACAGGCTGCAAACAT
Yersinia pestis KIM y3956 -309 3 AATTTAGACTACCCTTTCATTT
Serratia proteamaculans 568 Spro_4580 -121 3.5 ATTTATGACACGCCTCAAAACC
Proteus mirabilis HI4320 PMI2820 -135 3.3 TATTATAATCTATTCCTTATTA
Position: -124
Score: 3.3
Sequence: TACTGCTATCTGTTCTACATTA
Position: -21
Score: 3.6
Sequence: AAAAGAGATAGGGATCAATTTA
Locus tag: HDEF_1521
HDEF_1521 -124 3.3 TACTGCTATCTGTTCTACATTA
-21 3.6 AAAAGAGATAGGGATCAATTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hupA
Ortholog function: DNA-binding protein HU-alpha (HU-2)
Escherichia coli str. K-12 substr. MG1655 b4000 -179 3.4 AAACGTGATTTAACGCCTGATT
Citrobacter koseri ATCC BAA-895 CKO_02986 -179 3.4 AAACGTGATTTAACGCCTGATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04382 -179 3.4 AAACGTGATTTACCGCCTGAAT
Enterobacter sp. 638 Ent638_0213 -179 3.5 AAACGTGATTTAACGCCTGTTT
Yersinia pestis KIM y0499 -181 3.4 AAACGTGATTTAACGCCTGATT
Serratia proteamaculans 568 Spro_0290 -181 3.4 AAACGTGATTTAACGCCTCATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0238 -197 3.3 AAACGTGATTTAAGGCCTGAAA
Edwardsiella tarda EIB202 ETAE_0183 -182 3.3 AAACGTGATTTAACACCTGATT
Proteus mirabilis HI4320 PMI2771 -183 3.7 AAACGTGATTTAGTGCTTGAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0492 -179 3.4 AAACGTGATTTAATGCTTTAAA
Position: -194
Score: 4.1
Sequence: TTTTTTAATAGTCATAACATAT
Locus tag: HDEF_1595
HDEF_1595 -194 4.1 TTTTTTAATAGTCATAACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdaC
Ortholog function: Serine transporter
Escherichia coli str. K-12 substr. MG1655 b2796 -179 4.2 ATTTGAGATCAAGATCACTGAT
Salmonella typhimurium LT2 STM2970 -176 4.2 ATTTGAGATCGGGATCACTGAT
Citrobacter koseri ATCC BAA-895 CKO_04152 -176 4.1 ATTTGGGATCGCGATCACTGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03139 -158 4.2 ATTTGAGATCGCGATCACTGAT
Enterobacter sp. 638 Ent638_3249 -176 4.1 ATTTGGGATCAGGATCACTGAT
Erwinia amylovora ATCC 49946 EAM_1294 -300 3.6 ATTTGTTAAAAATCGCAAAAAA
-180 3.9 AAATGTGATTCCGATCACCGGC
Yersinia pestis KIM y2862 -286 4.3 AATTGAGATCACGATCACGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3158 -195 3.7 TTCTGTGATCGCCTCAATATTA
Proteus mirabilis HI4320 PMI0672 -283 4.3 ATTTGAGATGGTGATCACGGTA
Position: -107
Score: 4.1
Sequence: AAAAATGATTCCAATCAAAATA
Locus tag: HDEF_1883
HDEF_1883 -107 4.1 AAAAATGATTCCAATCAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Enterobacter sp. 638 Ent638_1222 -295 4.2 TATCGTGACTGTGATCACTGTT
Erwinia amylovora ATCC 49946 EAM_1168 -249 4.4 AAGTGTGATTTTTGTCACTGTT
-190 3.6 TAATGAGATTGTGATCCACTTA
Yersinia pestis KIM y3071 -254 4.5 AATCGTGATCCTAATCACTGTT
Serratia proteamaculans 568 Spro_1263 -253 4.3 ATCCGTGATCTAAATCACTGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1357 -265 4.7 ATTCGTGATCTAAATCACTGTT
Edwardsiella tarda EIB202 ETAE_2588 -261 3.7 ATGCGTGACCGTTGTCACTGTT
Proteus mirabilis HI4320 PMI0565 -264 4.3 AAAAGTGATCCCTCTCACTGTT
Position: -56
Score: 3.9
Sequence: TGTTTCGATTTTTAGCACAATA
Locus tag: HDEF_1886
HDEF_1886 -56 3.9 TGTTTCGATTTTTAGCACAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhB
Ortholog function: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Enterobacter sp. 638 Ent638_1225 -295 4.2 TATCGTGACTGTGATCACTGTT
Erwinia amylovora ATCC 49946 EAM_1171 -249 4.4 AAGTGTGATTTTTGTCACTGTT
-190 3.6 TAATGAGATTGTGATCCACTTA
Yersinia pestis KIM y3068 -254 4.5 AATCGTGATCCTAATCACTGTT
Serratia proteamaculans 568 Spro_1266 -253 4.3 ATCCGTGATCTAAATCACTGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1360 -265 4.7 ATTCGTGATCTAAATCACTGTT
Edwardsiella tarda EIB202 ETAE_2585 -261 3.7 ATGCGTGACCGTTGTCACTGTT
Proteus mirabilis HI4320 PMI0568 -264 4.3 AAAAGTGATCCCTCTCACTGTT
Position: -273
Score: 3.9
Sequence: TTTTTTAATCGATTTAAAATAT
Locus tag: HDEF_1900
HDEF_1900 -273 3.9 TTTTTTAATCGATTTAAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: thrA
Ortholog function: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
Escherichia coli str. K-12 substr. MG1655 b0002 -83 3.8 TTTATTGACTTAGGTCACTAAA
Salmonella typhimurium LT2 STM0002 -103 4.2 GAATGTGATCAATTTAAAAATT
Citrobacter koseri ATCC BAA-895 CKO_03385 -249 4.1 GAATGTGATCAAATTAAAAATT
Enterobacter sp. 638 Ent638_0564 -252 4.4 AATTGTGATCAAATTAGAAATT
Proteus mirabilis HI4320 PMI0001 -232 3.9 AAATTTGACATCTCTCTCGCTT
Photorhabdus luminescens subsp. laumondii TTO1 plu0563 -223 4.2 ATGTTTGACTTTGCGCACAAAT
Position: -1
Score: 3.7
Sequence: AATGGTGATTGAAATTAAAATG
Locus tag: HDEF_2043
HDEF_2043 -1 3.7 AATGGTGATTGAAATTAAAATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceF
Ortholog function: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Escherichia coli str. K-12 substr. MG1655 b0115 -156 3.7 AAACGTTATATATGTCAAGTTG
-131 3.8 AAATGTGCACAGTTTCATGATT
Salmonella typhimurium LT2 STM0153 -157 3.5 AAACATGATTTCTGTAAAATTG
-120 3.2 TTTACTGATTTCAATCAAAACC
-79 3 CTTATTAAGCTTTCTCACGAAA
-54 3.4 TAATGGGACAGGTTCCAGATAA
Citrobacter koseri ATCC BAA-895 CKO_03258 -180 3.2 ATTTGTGCATAGTTACATCTTT
-157 3.1 AAACGTTATTTCTGTAATCTTG
-148 3.3 TTCTGTAATCTTGTTAAAATGT
-120 3.2 TTTACTGATTTCAATCAAAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00119 -155 3.2 AAATGTTATTTCTGTAAGGTTG
-118 3.2 TTTACTGATTTCAATCAAAACC
Enterobacter sp. 638 Ent638_0661 -120 3.2 TTTACTGATTTCAATCAAAACC
-77 3.1 TATTGTATTTTCTGGCGAAAAT
-68 3 TTTAGCGATACGAATATGAAAT
Erwinia amylovora ATCC 49946 EAM_0748 -198 3.3 TAAAGCGATCGGATTTAACAAT
Yersinia pestis KIM y0768 -151 4.2 AAATGTGCTGGGTTTCATGATT
-139 3.3 TTTCATGATTTCGGTCAAGGTC
-74 3.4 TTTTGAAATTGGTATTACCAAT
Serratia proteamaculans 568 Spro_4010 -132 3.1 AAATGTGCGGGTAACCTGATTT
-56 3.4 TTTTGAAATTGGTATTACCAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3788 -120 3.7 ATTGGTGATTTAGCTCAAGGTC
-55 3.4 TTTTGAAATTGGTATTACCAAT
Edwardsiella tarda EIB202 ETAE_0660 -143 3.2 TTTCATGATTTACATCAATAGT
Proteus mirabilis HI4320 PMI2045 -218 3.1 TGTTTTTAATCTTTTCTAATAA
-199 4.4 TAATGCGATCTAGTTATCAAAT
-181 4.2 AAATTTGATGAATTTATCAAAT
-158 3 ATTTGTTAAAATTTGCAGGTTT
-138 3.9 TTTTATGATTTCGCTCAACAAC
-95 3.1 CTTTGTTACTTTATTATCCATT
-89 3.1 TACTTTATTATCCATTACATTA
Position: -116
Score: 3.2
Sequence: ATGAGTGAACCACTTTAGAGAT
Position: -103
Score: 3.1
Sequence: TTTAGAGATCCTGTTTAGAGAA
Position: -43
Score: 3.6
Sequence: AAATGTCGTTTAACTCAAAAAA
Locus tag: HDEF_2044
HDEF_2044 -116 3.2 ATGAGTGAACCACTTTAGAGAT
-103 3.1 TTTAGAGATCCTGTTTAGAGAA
-43 3.6 AAATGTCGTTTAACTCAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceE
Ortholog function: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Escherichia coli str. K-12 substr. MG1655 b0114 -156 3.7 AAACGTTATATATGTCAAGTTG
-131 3.8 AAATGTGCACAGTTTCATGATT
Salmonella typhimurium LT2 STM0152 -157 3.5 AAACATGATTTCTGTAAAATTG
-120 3.2 TTTACTGATTTCAATCAAAACC
-79 3 CTTATTAAGCTTTCTCACGAAA
-54 3.4 TAATGGGACAGGTTCCAGATAA
Citrobacter koseri ATCC BAA-895 CKO_03259 -180 3.2 ATTTGTGCATAGTTACATCTTT
-157 3.1 AAACGTTATTTCTGTAATCTTG
-148 3.3 TTCTGTAATCTTGTTAAAATGT
-120 3.2 TTTACTGATTTCAATCAAAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00118 -155 3.2 AAATGTTATTTCTGTAAGGTTG
-118 3.2 TTTACTGATTTCAATCAAAACC
Enterobacter sp. 638 Ent638_0660 -120 3.2 TTTACTGATTTCAATCAAAACC
-77 3.1 TATTGTATTTTCTGGCGAAAAT
-68 3 TTTAGCGATACGAATATGAAAT
Erwinia amylovora ATCC 49946 EAM_0747 -198 3.3 TAAAGCGATCGGATTTAACAAT
Yersinia pestis KIM y0767 -151 4.2 AAATGTGCTGGGTTTCATGATT
-139 3.3 TTTCATGATTTCGGTCAAGGTC
-74 3.4 TTTTGAAATTGGTATTACCAAT
Serratia proteamaculans 568 Spro_4011 -132 3.1 AAATGTGCGGGTAACCTGATTT
-56 3.4 TTTTGAAATTGGTATTACCAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3789 -120 3.7 ATTGGTGATTTAGCTCAAGGTC
-55 3.4 TTTTGAAATTGGTATTACCAAT
Edwardsiella tarda EIB202 ETAE_0659 -143 3.2 TTTCATGATTTACATCAATAGT
Proteus mirabilis HI4320 PMI2046 -218 3.1 TGTTTTTAATCTTTTCTAATAA
-199 4.4 TAATGCGATCTAGTTATCAAAT
-181 4.2 AAATTTGATGAATTTATCAAAT
-158 3 ATTTGTTAAAATTTGCAGGTTT
-138 3.9 TTTTATGATTTCGCTCAACAAC
-95 3.1 CTTTGTTACTTTATTATCCATT
-89 3.1 TACTTTATTATCCATTACATTA
Position: -301
Score: 4.1
Sequence: TGATGCGACCAATTTCACGTAA
Locus tag: HDEF_2310
HDEF_2310 -301 4.1 TGATGCGACCAATTTCACGTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yigL
Ortholog function: Hydrolase (HAD superfamily)
Citrobacter koseri ATCC BAA-895 CKO_00167 -60 3.8 TATTGTGTCAGGCATCATAAAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04322 -56 3.8 TTGTGTGATACACGGTAAAAAA
Enterobacter sp. 638 Ent638_3970 -56 4.3 TTTTGTGATGCGTCACGAAAAA
Yersinia pestis KIM y0401 -144 4.8 AGTTGTGCTATGGCTCACAAAA
Serratia proteamaculans 568 Spro_0197 -88 3.8 TTGTAAGAATTGAATCACAATA
-53 4.2 TCTTGTGCCAGAGGTCACATTT
Edwardsiella tarda EIB202 ETAE_3342 -217 3.9 CGGTGTGATAATCCTCAAACTT
Position: -52
Score: 4
Sequence: TAATGTCATTTAAAGCATATTT
Locus tag: HDEF_2337
HDEF_2337 -52 4 TAATGTCATTTAAAGCATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpA
Ortholog function: ATP synthase subunit A
Escherichia coli str. K-12 substr. MG1655 b3734 -263 4.8 ATATGTGATCTGAAGCACGCTT
Salmonella typhimurium LT2 STM3867 -262 4.6 ATGTGTGATCTGGTGCACGCTT
-211 4.1 TTTTGTACGATCGTTCACACTT
Citrobacter koseri ATCC BAA-895 CKO_00073 -262 4.7 ATATGTGATCCGAAGCACGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04139 -262 4.7 TTATGTGATCTGATGCACGCTT
Enterobacter sp. 638 Ent638_4130 -261 4.8 TTTTGTGATCTCGTGCACGCTT
Erwinia amylovora ATCC 49946 EAM_3476 -264 4.4 ATTTGTGATCGTGGACACGCTT
Yersinia pestis KIM y4137 -263 5.4 TTATGTGATGTATTTCACGTTT
Serratia proteamaculans 568 Spro_0006 -265 4.4 TATTGTGAGCAACTACACGTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4514 -254 5 TTATGTGAGTCACATCACAGAT
Edwardsiella tarda EIB202 ETAE_3531 -297 3.7 AATCGTGAAAATATTTAAATTA
Proteus mirabilis HI4320 PMI3062 -259 5 TTGTGTGTTCTAGATCACATTA
Photorhabdus luminescens subsp. laumondii TTO1 plu0042 -265 5.7 TTATGTGATTTAAATCACATTT