Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CodY regulog to Streptococcus uberis 0140J

Reference regulog properties
Source regulog: CodY - Streptococcaceae
Regulator type: Transcription factor
Regulator family: CodY
Regulation mode: repressor (activator)
Biological process: Amino acid metabolism
Effector: Guanosine triphosphate; Branched-chain amino acids
Phylum: Firmicutes
Propagated regulon:
Target genome Streptococcus uberis 0140J
Orthologous TF(s) SUB1528
Regulated genes 19
Built upon 273 sites [see more]
Predicted regulatory interactions in Streptococcus uberis 0140J
Locus tag Position Score Sequence
Position: -90
Score: 4.6
Sequence: AAGATTCTAAAAATT
Locus tag: SUB0115
SUB0115 -90 4.6 AAGATTCTAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpoB
Ortholog function: DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)
Streptococcus agalactiae 2603V/R SAG0160 -128 5.2 AACTTTCTGAAAATT
Streptococcus dysgalactiae subsp. equisimilis GGS_124 SDEG_0131 -91 4.6 AAGATTCTAAAAATT
Streptococcus gallolyticus UCN34 GALLO_0084 -165 4.6 AAGATTCTAAAAATT
Streptococcus gordonii str. Challis substr. CH1 SGO_1927 -222 5.4 ATTTTTCTGAAAATT
Streptococcus mitis B6 smi_1847 -113 5 AAGATTCTGAAAATT
Streptococcus mutans UA159 SMU.1990 -84 5.3 AAAATTCTGAAAATT
Streptococcus pneumoniae TIGR4 SP_1961 -112 5 AAGATTCTGAAAATT
Streptococcus pyogenes M1 GAS SPy0098 -91 5.2 AATATTCTAAAAATT
Streptococcus suis 05ZYH33 SSU05_0121 -276 4.6 AAGATTCTAAAAATT
Streptococcus thermophilus CNRZ1066 str1868 -171 4.6 AAAGTTCTAAAAATT
Streptococcus uberis 0140J SUB0115 -90 4.6 AAGATTCTAAAAATT
Position: -26
Score: 5
Sequence: AATATTCATAAAATT
Locus tag: SUB0316
SUB0316 -26 5 AATATTCATAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: thrA
Ortholog function: Aspartokinase (EC 2.7.2.4)
Lactococcus lactis subsp. cremoris SK11 LACR_0783 -71 5.6 AATTATCTGAAAATT
Lactococcus lactis subsp. lactis Il1403 L0097 -70 5.6 AATTATCTGAAAATT
Streptococcus agalactiae 2603V/R SAG0339 -52 4.9 AATTTTCTGACTTTT
Streptococcus gallolyticus UCN34 GALLO_0331 -52 5.3 AATTTTCAGAATTTT
Streptococcus gordonii str. Challis substr. CH1 SGO_1701 -38 4.5 AATTGTTTGAATAAT
Streptococcus mutans UA159 SMU.1748 -53 5.3 AATTTTCTGAATTTT
Streptococcus sanguinis SK36 SSA_1943 -47 5.3 AATTTTCAGAATTTT
Streptococcus suis 05ZYH33 SSU05_1811 -123 4.6 GTTTTTCTGAAATTT
Streptococcus thermophilus CNRZ1066 str0378 -56 5.1 AATTATCAGAATTTT
Streptococcus uberis 0140J SUB0316 -26 5 AATATTCATAAAATT
Position: -43
Score: 5.1
Sequence: AATTGTTAGAAAATT
Locus tag: SUB0370
SUB0370 -43 5.1 AATTGTTAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: braB
Ortholog function: Branched-chain amino acid transport system carrier protein
Streptococcus pyogenes M1 GAS SPy0323 -131 4.8 AATTTTCAGTCAATT
Streptococcus uberis 0140J SUB0370 -43 5.1 AATTGTTAGAAAATT
Position: -66
Score: 5.6
Sequence: AATTTTCTGATAATT
Locus tag: SUB0432
SUB0432 -66 5.6 AATTTTCTGATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: livK
Ortholog function: Branched-chain amino acids ABC transporter, substrate-binding protein (TC 3.A.1.4.1)
Streptococcus agalactiae 2603V/R SAG1582 -56 5.3 AATATTCTGATAATT
Streptococcus dysgalactiae subsp. equisimilis GGS_124 SDEG_0443 -98 4.9 ATTTTTCAAAATATT
-65 5.6 AATTTTCTGATAATT
Streptococcus gallolyticus UCN34 GALLO_1760 -66 5.6 AATTTTCTGATAATT
Streptococcus gordonii str. Challis substr. CH1 SGO_1630 -66 5.6 AATTTTCTGATAATT
Streptococcus mitis B6 smi_1415 -61 5.6 AATTTTCTGATAATT
Streptococcus mutans UA159 SMU.1669 -66 5.3 AATATTCAGATAATT
Streptococcus pneumoniae TIGR4 SP_0749 -60 5.6 AATTTTCTGATAATT
Streptococcus sanguinis SK36 SSA_1729 -65 5.2 AATTGTCAGATAATT
Streptococcus suis 05ZYH33 SSU05_1548 -64 5.6 AATTTTCAGATAATT
Streptococcus thermophilus CNRZ1066 str0359 -65 5.6 AATTTTCTGATAATT
Streptococcus uberis 0140J SUB0432 -66 5.6 AATTTTCTGATAATT
Position: -53
Score: 5.3
Sequence: AAAATTCTGAAAATT
Locus tag: SUB0445
SUB0445 -53 5.3 AAAATTCTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: serC
Ortholog function: Phosphoserine aminotransferase (EC 2.6.1.52)
Lactococcus lactis subsp. cremoris SK11 LACR_0619 -59 5.6 AATTATCAGAAAATT
Lactococcus lactis subsp. lactis Il1403 L0083 -59 5.6 AATTATCAGAAAATT
Streptococcus gallolyticus UCN34 GALLO_1746 -51 5.3 AAAATTCAGAAAATT
Streptococcus mutans UA159 SMU.1656 -50 5.3 AAAATTCTGAAAATT
Streptococcus suis 05ZYH33 SSU05_0665 -54 5.2 AATTGTCTGAATATT
Streptococcus uberis 0140J SUB0445 -53 5.3 AAAATTCTGAAAATT
Position: -154
Score: 4.8
Sequence: CTTTTTCTGAAAATT
Locus tag: SUB0601
SUB0601 -154 4.8 CTTTTTCTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepF
Ortholog function: Oligoendopeptidase F
Streptococcus agalactiae 2603V/R SAG0758 -127 5.1 AATTTTCAGATTTTT
Streptococcus gallolyticus UCN34 GALLO_1516 -220 5.1 AATTTTCTGATTTTT
Streptococcus gordonii str. Challis substr. CH1 SGO_0342 22 4.5 AATTTCCAGAAAATG
Streptococcus sanguinis SK36 SSA_2051 22 4.5 AATTTCCAGAAAATG
Streptococcus uberis 0140J SUB0601 -154 4.8 CTTTTTCTGAAAATT
Position: -55
Score: 4.8
Sequence: AATTTTCAGAAAAAG
Locus tag: SUB0602
SUB0602 -55 4.8 AATTTTCAGAAAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppc
Ortholog function: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Streptococcus agalactiae 2603V/R SAG0759 -96 5.1 AAAAATCTGAAAATT
Streptococcus dysgalactiae subsp. equisimilis GGS_124 SDEG_0621 -167 4.5 CATTTTCAGGAAATT
Streptococcus gallolyticus UCN34 GALLO_1515 -132 5.1 AAAAATCAGAAAATT
Streptococcus thermophilus CNRZ1066 str0718 -108 4.9 AAAAGTCAGAAAATT
Streptococcus uberis 0140J SUB0602 -55 4.8 AATTTTCAGAAAAAG
Position: -60
Score: 5.6
Sequence: AATATTCTGAAAATT
Locus tag: SUB0762
SUB0762 -60 5.6 AATATTCTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gdhA
Ortholog function: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Streptococcus agalactiae 2603V/R SAG1335 -55 4.9 AAAATTCTGACAATT
Streptococcus dysgalactiae subsp. equisimilis GGS_124 SDEG_0823 -61 5.3 AAAATTCAGAAAATT
Streptococcus equi subsp. zooepidemicus MGCS10565 Sez_1090 -65 5.3 AAAATTCAGAAAATT
Streptococcus gallolyticus UCN34 GALLO_1293 -78 5.8 AATTTTCAGAAAATT
Streptococcus gordonii str. Challis substr. CH1 SGO_0276 -95 5.8 AATTTTCAGAAAATT
Streptococcus mitis B6 smi_0814 -95 5.5 AATTTTTAGAAAATT
Streptococcus mutans UA159 SMU.913 -68 5.6 AATATTCAGAAAATT
Streptococcus pneumoniae TIGR4 SP_1306 -94 5.5 AATTTTTAGAAAATT
Streptococcus sanguinis SK36 SSA_0371 -182 5.5 AATTTTTAGAAAATT
Streptococcus suis 05ZYH33 SSU05_0252 -45 5.1 AATTGTCAGACAATT
Streptococcus thermophilus CNRZ1066 str0430 -52 5 AAGATTCTGAAAATT
Streptococcus uberis 0140J SUB0762 -60 5.6 AATATTCTGAAAATT
Position: -92
Score: 5
Sequence: AATTATCAGATATTT
Locus tag: SUB0889
SUB0889 -92 5 AATTATCAGATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dtpT
Ortholog function: Di- and tripeptide permease DtpT
Streptococcus agalactiae 2603V/R SAG1444 -232 5 AATCTTCAGATAATT
Streptococcus gallolyticus UCN34 GALLO_0638 -153 4.7 TATTTTCTGACTATT
Streptococcus mitis B6 smi_1779 -64 5.4 ATTTTTCAGAAAATT
Streptococcus uberis 0140J SUB0889 -92 5 AATTATCAGATATTT
Position: -54
Score: 5.5
Sequence: AATTTTTAGAAAATT
Locus tag: SUB0939
SUB0939 -54 5.5 AATTTTTAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: asd
Ortholog function: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
Streptococcus dysgalactiae subsp. equisimilis GGS_124 SDEG_1025 -60 5.5 AATTTTTAGAAAATT
Streptococcus gallolyticus UCN34 GALLO_1113 -52 5.1 ATTTTTTAGAAAATT
Streptococcus gordonii str. Challis substr. CH1 SGO_1206 -29 5.5 AATTTTTAGAAAATT
Streptococcus mitis B6 smi_1133 -31 5.5 AATTTTTAGAAAATT
Streptococcus pneumoniae TIGR4 SP_1013 -31 5.5 AATTTTTAGAAAATT
Streptococcus sanguinis SK36 SSA_1194 -30 5.5 AATTTTTTGAAAATT
Streptococcus uberis 0140J SUB0939 -54 5.5 AATTTTTAGAAAATT
Position: -88
Score: 4.8
Sequence: AATATTCCGAATATT
Locus tag: SUB1010
SUB1010 -88 4.8 AATATTCCGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvE
Ortholog function: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Lactococcus lactis subsp. cremoris SK11 LACR_1409 -97 4.8 AATTGTTTGAAATTT
Streptococcus agalactiae 2603V/R SAG1152 -83 4.7 ATTTATCTGAATTTT
Streptococcus gallolyticus UCN34 GALLO_0979 -84 5.3 AATTTTCAGAATTTT
Streptococcus gordonii str. Challis substr. CH1 SGO_1238 -99 5.8 AATTTTCTGAAAATT
Streptococcus mitis B6 smi_0906 -88 5.8 AATTTTCTGAAAATT
Streptococcus mutans UA159 SMU.1203 -83 5.3 AATTTTCAGAATTTT
Streptococcus pneumoniae TIGR4 SP_0856 -88 5.8 AATTTTCTGAAAATT
Streptococcus pyogenes M1 GAS SPy0911 -102 4.6 AATTTTATGATAAAT
Streptococcus sanguinis SK36 SSA_1225 -98 5.8 AATTTTCTGAAAATT
Streptococcus thermophilus CNRZ1066 str0590 -90 4.9 AATTGTCAGAATTTT
Streptococcus uberis 0140J SUB1010 -88 4.8 AATATTCCGAATATT
Position: -87
Score: 5.4
Sequence: AATTTTCAGACAATT
Locus tag: SUB1220
SUB1220 -87 5.4 AATTTTCAGACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gapN
Ortholog function: Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (NADP) (EC 1.2.1.9)
Streptococcus agalactiae 2603V/R SAG0823 -72 4.6 ATATGTCAGATAATT
Streptococcus dysgalactiae subsp. equisimilis GGS_124 SDEG_1419 -87 4.9 AATTTTCTGATACTT
Streptococcus equi subsp. zooepidemicus MGCS10565 Sez_0766 -87 4.6 AATTTTCAGACTCTT
Streptococcus gallolyticus UCN34 GALLO_0746 -87 5.3 AATTTTCTGAATTTT
Streptococcus mutans UA159 SMU.676 -89 5.3 AATTTTCTGAATTTT
Streptococcus pneumoniae TIGR4 SP_1119 -55 5.2 GATTTTCTGAAAATT
Streptococcus pyogenes M1 GAS SPy1371 -87 5.3 AATTTTCAGATATTT
Streptococcus sanguinis SK36 SSA_0774 -53 5.8 AATTTTCAGAAAATT
Streptococcus thermophilus CNRZ1066 str1263 -89 5 AATTTTCTGAATACT
Streptococcus uberis 0140J SUB1220 -87 5.4 AATTTTCAGACAATT
Position: -123
Score: 4.6
Sequence: AATATACTGAAAAAT
Locus tag: SUB1323
SUB1323 -123 4.6 AATATACTGAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: asnA
Ortholog function: Aspartate--ammonia ligase (EC 6.3.1.1)
Streptococcus gallolyticus UCN34 GALLO_0534 -144 4.8 AATTTTCAAAAAAGT
Streptococcus pyogenes M1 GAS SPy1539 -107 4.9 ATTTTTCAAAATATT
Streptococcus suis 05ZYH33 SSU05_0467 -124 5.3 AATTATCAGAATATT
Streptococcus uberis 0140J SUB1323 -123 4.6 AATATACTGAAAAAT
Position: -54
Score: 4.8
Sequence: AATATTCTGAAAAAA
Locus tag: SUB1411
SUB1411 -54 4.8 AATATTCTGAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aapA
Ortholog function: Amino acid permease
Streptococcus dysgalactiae subsp. equisimilis GGS_124 SDEG_1715 -41 5 AATTTTCTGAAAAAA
Streptococcus pyogenes M1 GAS SPy1654 -53 5 AATTTTCTGAAAAAA
Streptococcus thermophilus CNRZ1066 str0509 -108 4.7 AATATTCTGAATTAT
Streptococcus uberis 0140J SUB1411 -54 4.8 AATATTCTGAAAAAA
Position: -82
Score: 5.6
Sequence: AATTTTCTGATAATT
Locus tag: SUB1528
SUB1528 -82 5.6 AATTTTCTGATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: codY
Ortholog function: Nutrient limitation global transcriptional regulator CodY, CodY family
Lactococcus lactis subsp. cremoris SK11 LACR_0168 -101 5.4 AATTTTCTGACAATT
Lactococcus lactis subsp. lactis Il1403 L0243 -101 5.4 AATTTTCTGACAATT
Streptococcus agalactiae 2603V/R SAG1675 -46 5 AATTTTGAGAATATT
Streptococcus dysgalactiae subsp. equisimilis GGS_124 SDEG_1848 -80 5.6 AATTTTCTGATAATT
Streptococcus equi subsp. zooepidemicus MGCS10565 Sez_0387 -78 5.6 AATTTTCTGATAATT
Streptococcus gallolyticus UCN34 GALLO_1876 -77 5.6 AATTTTCAGATAATT
Streptococcus gordonii str. Challis substr. CH1 SGO_0431 -71 5.6 AATTTTCAGATAATT
Streptococcus mitis B6 smi_0687 -71 5.6 AATTTTCAGATAATT
Streptococcus mutans UA159 SMU.1824c -75 5.4 AATTTTCTGACAATT
Streptococcus pneumoniae TIGR4 SP_1584 -71 5.6 AATTTTCAGATAATT
Streptococcus pyogenes M1 GAS SPy1777 -80 5.6 AATTTTCTGATAATT
Streptococcus sanguinis SK36 SSA_0566 -71 5.6 AATTTTCAGATAATT
Streptococcus suis 05ZYH33 SSU05_0350 -74 5.3 AATATTCTGATAATT
Streptococcus thermophilus CNRZ1066 str1635 -132 5.4 AATTTTCAGACAATT
Streptococcus uberis 0140J SUB1528 -82 5.6 AATTTTCTGATAATT
Position: -88
Score: 5.2
Sequence: AATTTTCAGATAAAT
Locus tag: SUB1625
SUB1625 -88 5.2 AATTTTCAGATAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: oppA1
Ortholog function: Oligopeptide ABC transporter, substrate-binding protein (TC 3.A.1.5.1)
Streptococcus dysgalactiae subsp. equisimilis GGS_124 SDEG_1930 -90 5.2 AATTTTCAGATAAAT
Streptococcus equi subsp. zooepidemicus MGCS10565 Sez_0279 -92 5.2 AATTTTCAGATAAAT
Streptococcus uberis 0140J SUB1625 -88 5.2 AATTTTCAGATAAAT
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