Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CodY regulog to Streptococcus pneumoniae MLV-016

Reference regulog properties
Source regulog: CodY - Streptococcaceae
Regulator type: Transcription factor
Regulator family: CodY
Regulation mode: repressor (activator)
Biological process: Amino acid metabolism
Effector: Guanosine triphosphate; Branched-chain amino acids
Phylum: Firmicutes
Propagated regulon:
Target genome Streptococcus pneumoniae MLV-016
Orthologous TF(s) SpneM_010100001585
Regulated genes 21
Built upon 273 sites [see more]
Predicted regulatory interactions in Streptococcus pneumoniae MLV-016
Locus tag Position Score Sequence
Position: -87
Score: 5.6
Sequence: AATATTCTGAAAATT
Locus tag: SpneM_010100000065
SpneM_010100000065 -87 5.6 AATATTCTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: oppA2
Ortholog function: Oligopeptide ABC transporter, substrate-binding protein (TC 3.A.1.5.1)
Streptococcus mitis B6 smi_0322 -83 5.6 AATATTCTGAAAATT
Streptococcus pneumoniae TIGR4 SP_1891 -87 5.6 AATATTCTGAAAATT
Streptococcus thermophilus CNRZ1066 str1445 -76 4.7 AATTTTCTGATAAAA
Streptococcus thermophilus CNRZ1066 str1443 -194 4.6 ATTTTTTAGAAAATA
-121 4.9 ATTATTCTGAAAAAT
Streptococcus thermophilus CNRZ1066 str1442 -194 4.6 ATTTTTTAGAAAATA
-121 4.9 ATTATTCTGAAAAAT
Position: -95
Score: 5.2
Sequence: AATTGTCAGAAATTT
Locus tag: SpneM_010100000195
SpneM_010100000195 -95 5.2 AATTGTCAGAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fatD
Ortholog function: Iron-siderophore ABC transporter, permease protein 1
Streptococcus agalactiae 2603V/R SAG1010 -177 4.7 AATATTCTGCTAATT
Streptococcus gallolyticus UCN34 GALLO_0871 -109 5.8 AATTTTCAGAAAATT
Streptococcus pneumoniae TIGR4 SP_1869 -80 5.2 AATTGTCAGAAATTT
Position: -71
Score: 5.6
Sequence: AATTTTCAGATAATT
Locus tag: SpneM_010100001585
SpneM_010100001585 -71 5.6 AATTTTCAGATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: codY
Ortholog function: Nutrient limitation global transcriptional regulator CodY, CodY family
Lactococcus lactis subsp. cremoris SK11 LACR_0168 -101 5.4 AATTTTCTGACAATT
Lactococcus lactis subsp. lactis Il1403 L0243 -101 5.4 AATTTTCTGACAATT
Streptococcus agalactiae 2603V/R SAG1675 -46 5 AATTTTGAGAATATT
Streptococcus dysgalactiae subsp. equisimilis GGS_124 SDEG_1848 -80 5.6 AATTTTCTGATAATT
Streptococcus equi subsp. zooepidemicus MGCS10565 Sez_0387 -78 5.6 AATTTTCTGATAATT
Streptococcus gallolyticus UCN34 GALLO_1876 -77 5.6 AATTTTCAGATAATT
Streptococcus gordonii str. Challis substr. CH1 SGO_0431 -71 5.6 AATTTTCAGATAATT
Streptococcus mitis B6 smi_0687 -71 5.6 AATTTTCAGATAATT
Streptococcus mutans UA159 SMU.1824c -75 5.4 AATTTTCTGACAATT
Streptococcus pneumoniae TIGR4 SP_1584 -71 5.6 AATTTTCAGATAATT
Streptococcus pyogenes M1 GAS SPy1777 -80 5.6 AATTTTCTGATAATT
Streptococcus sanguinis SK36 SSA_0566 -71 5.6 AATTTTCAGATAATT
Streptococcus suis 05ZYH33 SSU05_0350 -74 5.3 AATATTCTGATAATT
Streptococcus thermophilus CNRZ1066 str1635 -132 5.4 AATTTTCAGACAATT
Streptococcus uberis 0140J SUB1528 -82 5.6 AATTTTCTGATAATT
Position: -55
Score: 4.7
Sequence: AATTGTCAGATAATA
Locus tag: SpneM_010100001610
SpneM_010100001610 -55 4.7 AATTGTCAGATAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ubiE
Ortholog function: SAM-dependent methyltransferase
Streptococcus gordonii str. Challis substr. CH1 SGO_0226 -60 5.2 AAATGTCAGAAAATT
Streptococcus mitis B6 smi_1568 -56 4.7 AATTGTCAGATAATA
Streptococcus mutans UA159 SMU.1301c -65 5.1 TATTTTCAGAATATT
Streptococcus pneumoniae TIGR4 SP_1578 -55 4.7 AATTGTCAGATAATA
Streptococcus sanguinis SK36 SSA_0321 -64 5 AATTGTCTGAAAATA
Position: -124
Score: 5.3
Sequence: AAATTTCAGAAATTT
Locus tag: SpneM_010100002273
SpneM_010100002273 -124 5.3 AAATTTCAGAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: str1582
Ortholog function: Predicted amino acid ABC transporter, permease protein 1
Streptococcus gordonii str. Challis substr. CH1 SGO_0985 -248 4.8 TATTTTCAGAATAAT
Streptococcus mitis B6 smi_1436 -124 5.3 AAATTTCAGAAATTT
Streptococcus pneumoniae TIGR4 SP_0711 -183 5.3 AAATTTCAGAAATTT
Position: -60
Score: 5.6
Sequence: AATTTTCTGATAATT
Locus tag: SpneM_010100002468
SpneM_010100002468 -60 5.6 AATTTTCTGATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: livK
Ortholog function: Branched-chain amino acids ABC transporter, substrate-binding protein (TC 3.A.1.4.1)
Streptococcus agalactiae 2603V/R SAG1582 -56 5.3 AATATTCTGATAATT
Streptococcus dysgalactiae subsp. equisimilis GGS_124 SDEG_0443 -98 4.9 ATTTTTCAAAATATT
-65 5.6 AATTTTCTGATAATT
Streptococcus gallolyticus UCN34 GALLO_1760 -66 5.6 AATTTTCTGATAATT
Streptococcus gordonii str. Challis substr. CH1 SGO_1630 -66 5.6 AATTTTCTGATAATT
Streptococcus mitis B6 smi_1415 -61 5.6 AATTTTCTGATAATT
Streptococcus mutans UA159 SMU.1669 -66 5.3 AATATTCAGATAATT
Streptococcus pneumoniae TIGR4 SP_0749 -60 5.6 AATTTTCTGATAATT
Streptococcus sanguinis SK36 SSA_1729 -65 5.2 AATTGTCAGATAATT
Streptococcus suis 05ZYH33 SSU05_1548 -64 5.6 AATTTTCAGATAATT
Streptococcus thermophilus CNRZ1066 str0359 -65 5.6 AATTTTCTGATAATT
Streptococcus uberis 0140J SUB0432 -66 5.6 AATTTTCTGATAATT
Position: -183
Score: 4.4
Sequence: TAATTTCTAATAATT
Locus tag: SpneM_010100002493
SpneM_010100002493 -183 4.4 TAATTTCTAATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acuB
Ortholog function: Acetoin utilization protein AcuB
Streptococcus gordonii str. Challis substr. CH1 SGO_1625 -173 4.8 AATTTTTAGAAACTT
Streptococcus mitis B6 smi_1410 -92 4.7 ACTTTTCTGAATTTT
Streptococcus pneumoniae TIGR4 SP_0754 -183 4.4 TAATTTCTAATAATT
Streptococcus sanguinis SK36 SSA_1724 -112 4.6 ATTTTTCTAAATTTT
Position: -88
Score: 5.8
Sequence: AATTTTCTGAAAATT
Locus tag: SpneM_010100002998
SpneM_010100002998 -88 5.8 AATTTTCTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvE
Ortholog function: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Lactococcus lactis subsp. cremoris SK11 LACR_1409 -97 4.8 AATTGTTTGAAATTT
Streptococcus agalactiae 2603V/R SAG1152 -83 4.7 ATTTATCTGAATTTT
Streptococcus gallolyticus UCN34 GALLO_0979 -84 5.3 AATTTTCAGAATTTT
Streptococcus gordonii str. Challis substr. CH1 SGO_1238 -99 5.8 AATTTTCTGAAAATT
Streptococcus mitis B6 smi_0906 -88 5.8 AATTTTCTGAAAATT
Streptococcus mutans UA159 SMU.1203 -83 5.3 AATTTTCAGAATTTT
Streptococcus pneumoniae TIGR4 SP_0856 -88 5.8 AATTTTCTGAAAATT
Streptococcus pyogenes M1 GAS SPy0911 -102 4.6 AATTTTATGATAAAT
Streptococcus sanguinis SK36 SSA_1225 -98 5.8 AATTTTCTGAAAATT
Streptococcus thermophilus CNRZ1066 str0590 -90 4.9 AATTGTCAGAATTTT
Streptococcus uberis 0140J SUB1010 -88 4.8 AATATTCCGAATATT
Position: -94
Score: 5.5
Sequence: AATTTTTAGAAAATT
Locus tag: SpneM_010100004194
SpneM_010100004194 -94 5.5 AATTTTTAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gdhA
Ortholog function: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Streptococcus agalactiae 2603V/R SAG1335 -55 4.9 AAAATTCTGACAATT
Streptococcus dysgalactiae subsp. equisimilis GGS_124 SDEG_0823 -61 5.3 AAAATTCAGAAAATT
Streptococcus equi subsp. zooepidemicus MGCS10565 Sez_1090 -65 5.3 AAAATTCAGAAAATT
Streptococcus gallolyticus UCN34 GALLO_1293 -78 5.8 AATTTTCAGAAAATT
Streptococcus gordonii str. Challis substr. CH1 SGO_0276 -95 5.8 AATTTTCAGAAAATT
Streptococcus mitis B6 smi_0814 -95 5.5 AATTTTTAGAAAATT
Streptococcus mutans UA159 SMU.913 -68 5.6 AATATTCAGAAAATT
Streptococcus pneumoniae TIGR4 SP_1306 -94 5.5 AATTTTTAGAAAATT
Streptococcus sanguinis SK36 SSA_0371 -182 5.5 AATTTTTAGAAAATT
Streptococcus suis 05ZYH33 SSU05_0252 -45 5.1 AATTGTCAGACAATT
Streptococcus thermophilus CNRZ1066 str0430 -52 5 AAGATTCTGAAAATT
Streptococcus uberis 0140J SUB0762 -60 5.6 AATATTCTGAAAATT
Position: -56
Score: 5.2
Sequence: AATTTTCACAAAATT
Locus tag: SpneM_010100004494
SpneM_010100004494 -56 5.2 AATTTTCACAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hom
Ortholog function: Homoserine dehydrogenase (EC 1.1.1.3)
Lactococcus lactis subsp. lactis Il1403 L0090 -41 4.9 AATTATCTTAAAATT
Streptococcus gallolyticus UCN34 GALLO_1241 -118 4.8 ATTTTTCTGTAAATT
Streptococcus mitis B6 smi_0773 -56 5.2 AATTTTCACAAAATT
Streptococcus pneumoniae TIGR4 SP_1361 -56 5.2 AATTTTCACAAAATT
Streptococcus suis 05ZYH33 SSU05_0801 -52 5 AATAGTCAGAATATT
Streptococcus thermophilus CNRZ1066 str0469 -70 4.6 AATATTCTGTCAATT
Position: -85
Score: 5.2
Sequence: AATTCTCTGAAAATT
Locus tag: SpneM_010100005368
SpneM_010100005368 -85 5.2 AATTCTCTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvD
Ortholog function: Dihydroxy-acid dehydratase (EC 4.2.1.9)
Streptococcus gordonii str. Challis substr. CH1 SGO_2064 -95 5.3 AAAATTCTGAAAATT
Streptococcus mitis B6 smi_0113 -85 5.8 AATTTTCTGAAAATT
Streptococcus pneumoniae TIGR4 SP_2126 -85 5.8 AATTTTCTGAAAATT
Streptococcus sanguinis SK36 SSA_2286 -78 5.3 AATCTTCTGAAAATT
Streptococcus thermophilus CNRZ1066 str1604 -61 4.7 ATTTTTTAGACAATT
Position: -55
Score: 5.2
Sequence: GATTTTCTGAAAATT
Locus tag: SpneM_010100006167
SpneM_010100006167 -55 5.2 GATTTTCTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gapN
Ortholog function: Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (NADP) (EC 1.2.1.9)
Streptococcus agalactiae 2603V/R SAG0823 -72 4.6 ATATGTCAGATAATT
Streptococcus dysgalactiae subsp. equisimilis GGS_124 SDEG_1419 -87 4.9 AATTTTCTGATACTT
Streptococcus equi subsp. zooepidemicus MGCS10565 Sez_0766 -87 4.6 AATTTTCAGACTCTT
Streptococcus gallolyticus UCN34 GALLO_0746 -87 5.3 AATTTTCTGAATTTT
Streptococcus mutans UA159 SMU.676 -89 5.3 AATTTTCTGAATTTT
Streptococcus pneumoniae TIGR4 SP_1119 -55 5.2 GATTTTCTGAAAATT
Streptococcus pyogenes M1 GAS SPy1371 -87 5.3 AATTTTCAGATATTT
Streptococcus sanguinis SK36 SSA_0774 -53 5.8 AATTTTCAGAAAATT
Streptococcus thermophilus CNRZ1066 str1263 -89 5 AATTTTCTGAATACT
Streptococcus uberis 0140J SUB1220 -87 5.4 AATTTTCAGACAATT
Position: 10
Score: 4.7
Sequence: AAAAATTAGAAAATT
Locus tag: SpneM_010100006427
SpneM_010100006427 10 4.7 AAAAATTAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppc
Ortholog function: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Streptococcus agalactiae 2603V/R SAG0759 -96 5.1 AAAAATCTGAAAATT
Streptococcus dysgalactiae subsp. equisimilis GGS_124 SDEG_0621 -167 4.5 CATTTTCAGGAAATT
Streptococcus gallolyticus UCN34 GALLO_1515 -132 5.1 AAAAATCAGAAAATT
Streptococcus thermophilus CNRZ1066 str0718 -108 4.9 AAAAGTCAGAAAATT
Streptococcus uberis 0140J SUB0602 -55 4.8 AATTTTCAGAAAAAG
Position: -31
Score: 5.5
Sequence: AATTTTTAGAAAATT
Locus tag: SpneM_010100006697
SpneM_010100006697 -31 5.5 AATTTTTAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: asd
Ortholog function: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
Streptococcus dysgalactiae subsp. equisimilis GGS_124 SDEG_1025 -60 5.5 AATTTTTAGAAAATT
Streptococcus gallolyticus UCN34 GALLO_1113 -52 5.1 ATTTTTTAGAAAATT
Streptococcus gordonii str. Challis substr. CH1 SGO_1206 -29 5.5 AATTTTTAGAAAATT
Streptococcus mitis B6 smi_1133 -31 5.5 AATTTTTAGAAAATT
Streptococcus pneumoniae TIGR4 SP_1013 -31 5.5 AATTTTTAGAAAATT
Streptococcus sanguinis SK36 SSA_1194 -30 5.5 AATTTTTTGAAAATT
Streptococcus uberis 0140J SUB0939 -54 5.5 AATTTTTAGAAAATT
Position: -33
Score: 5.2
Sequence: ATTATTCTGAAAATT
Locus tag: SpneM_010100007374
SpneM_010100007374 -33 5.2 ATTATTCTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SMU.1109
Ortholog function: Predicted Mn2+/Fe2+ transporter, NRAMP family
Streptococcus gallolyticus UCN34 GALLO_1124 -45 5.3 AATTATCTGAATATT
Streptococcus gordonii str. Challis substr. CH1 SGO_1506 -102 4.8 TATTTTCCGAAAATT
-42 5.6 AATTATCTGAAAATT
Streptococcus mutans UA159 SMU.1109c -105 5.3 AATTTTCTGAAAATA
Streptococcus pneumoniae TIGR4 SP_0159 -33 5.2 ATTATTCTGAAAATT
Streptococcus thermophilus CNRZ1066 str0745 -106 5 ATTTTTCAGAAAATA
-33 5.2 ATTATTCTGAAAATT
Position: -112
Score: 5
Sequence: AAGATTCTGAAAATT
Locus tag: SpneM_010100008519
SpneM_010100008519 -112 5 AAGATTCTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpoB
Ortholog function: DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)
Streptococcus agalactiae 2603V/R SAG0160 -128 5.2 AACTTTCTGAAAATT
Streptococcus dysgalactiae subsp. equisimilis GGS_124 SDEG_0131 -91 4.6 AAGATTCTAAAAATT
Streptococcus gallolyticus UCN34 GALLO_0084 -165 4.6 AAGATTCTAAAAATT
Streptococcus gordonii str. Challis substr. CH1 SGO_1927 -222 5.4 ATTTTTCTGAAAATT
Streptococcus mitis B6 smi_1847 -113 5 AAGATTCTGAAAATT
Streptococcus mutans UA159 SMU.1990 -84 5.3 AAAATTCTGAAAATT
Streptococcus pneumoniae TIGR4 SP_1961 -112 5 AAGATTCTGAAAATT
Streptococcus pyogenes M1 GAS SPy0098 -91 5.2 AATATTCTAAAAATT
Streptococcus suis 05ZYH33 SSU05_0121 -276 4.6 AAGATTCTAAAAATT
Streptococcus thermophilus CNRZ1066 str1868 -171 4.6 AAAGTTCTAAAAATT
Streptococcus uberis 0140J SUB0115 -90 4.6 AAGATTCTAAAAATT
Position: -74
Score: 5.3
Sequence: AAAATTCTGAAAATT
Locus tag: SpneM_010100009152
SpneM_010100009152 -74 5.3 AAAATTCTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: oppA2
Ortholog function: Oligopeptide ABC transporter, substrate-binding protein (TC 3.A.1.5.1)
Streptococcus gordonii str. Challis substr. CH1 SGO_1712 -90 5.2 AATATTCTGACAATT
Streptococcus mitis B6 smi_1758 -71 5.3 AAAATTCAGAAAATT
Streptococcus pneumoniae TIGR4 SP_0366 -71 5.3 AAAATTCTGAAAATT
Streptococcus sanguinis SK36 SSA_2165 -78 5.6 AATTATCAGAAAATT
Streptococcus sanguinis SK36 SSA_1948 -87 5.6 AATATTCTGAAAATT
Position: -93
Score: 5.3
Sequence: AAAATTCAGAAAATT
Locus tag: SpneM_010100009497
SpneM_010100009497 -93 5.3 AAAATTCAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvB
Ortholog function: Acetolactate synthase large subunit (EC 2.2.1.6)
Lactococcus lactis subsp. cremoris SK11 LACR_1311 -86 4.9 AATATTCTGACAAAT
Lactococcus lactis subsp. lactis Il1403 L0078 -86 4.9 AATATTCTGACAAAT
Streptococcus gallolyticus UCN34 GALLO_0305 -42 5.2 AATTTTTAGATAATT
Streptococcus gordonii str. Challis substr. CH1 SGO_0526 -249 5.8 AATTTTCTGAAAATT
-27 5.1 AATTTTTTGACAATT
Streptococcus mitis B6 smi_1825 -93 5.3 AAAATTCAGAAAATT
Streptococcus mutans UA159 SMU.231 -42 5.5 AATTTTTTGAAAATT
Streptococcus pneumoniae TIGR4 SP_0445 -93 5.3 AAAATTCAGAAAATT
Streptococcus sanguinis SK36 SSA_1970 -37 5.5 AATTTTTAGAAAATT
Streptococcus suis 05ZYH33 SSU05_1888 -296 5.8 AATTTTCAGAAAATT
Streptococcus thermophilus CNRZ1066 str1873 -27 5.2 AATTTTTAGATAATT
Position: -57
Score: 5.4
Sequence: AATTTTCTGAAAAAT
Locus tag: SpneM_010100010346
SpneM_010100010346 -57 5.4 AATTTTCTGAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: thrC
Ortholog function: Threonine synthase (EC 4.2.3.1)
Streptococcus agalactiae 2603V/R SAG0055 -100 5.2 AATTTTCTGAAAATC
Streptococcus dysgalactiae subsp. equisimilis GGS_124 SDEG_0063 -113 5.2 AATTTTCAGAAAACT
Streptococcus gallolyticus UCN34 GALLO_0042 -61 5.6 AATTTTCTGATAATT
Streptococcus gordonii str. Challis substr. CH1 SGO_0139 -57 5.2 AATTTTCTGATAAAT
Streptococcus mitis B6 smi_0193 -57 5.4 AATTTTCTGAAAAAT
Streptococcus mutans UA159 SMU.70 -59 5.2 AATTGTCTGATAATT
Streptococcus pneumoniae TIGR4 SP_2066 -57 5.4 AATTTTCTGAAAAAT
Streptococcus sanguinis SK36 SSA_0095 -57 5.2 AATTTTCTGATAAAT
Streptococcus suis 05ZYH33 SSU05_0281 -56 4.8 AATTTTCTGTCAATT
Streptococcus thermophilus CNRZ1066 str1878 -59 5.4 AATTTTCTGACAATT
Position: -41
Score: 5
Sequence: AAAATTTAGAAAATT
Locus tag: SpneM_010100010623
SpneM_010100010623 -41 5 AAAATTTAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ymdE
Ortholog function: Conserved hypothetical protein
Streptococcus gordonii str. Challis substr. CH1 SGO_0476 -42 5.3 AAAATTCAGAAAATT
Streptococcus mitis B6 smi_1990 4 5.3 AAAATTCTGAAAATT
Streptococcus pneumoniae TIGR4 SP_0095 -41 5 AAAATTTAGAAAATT
Streptococcus sanguinis SK36 SSA_0593 -42 5.3 AAAATTCAGAAAATT