Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Geobacillus kaustophilus HTA426

Reference regulog properties
Source regulog: CcpA - Bacillales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein
Phylum: Firmicutes
Propagated regulon:
Target genome Geobacillus kaustophilus HTA426
Orthologous TF(s) GK2810
Regulated genes 20
Built upon 559 sites [see more]
Predicted regulatory interactions in Geobacillus kaustophilus HTA426
Locus tag Position Score Sequence
Position: -37
Score: 4.8
Sequence: TTGAAAACGCTTGAAT
Locus tag: GK0929
GK0929 -37 4.8 TTGAAAACGCTTGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywcB
Ortholog function: Hypothetical membrane spanning protein
Geobacillus kaustophilus HTA426 GK0929 -37 4.8 TTGAAAACGCTTGAAT
Position: -47
Score: 4.2
Sequence: ATGAAAGCGCTAAGAC
Locus tag: GK1208
GK1208 -47 4.2 ATGAAAGCGCTAAGAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sucC
Ortholog function: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Bacillus amyloliquefaciens FZB42 RBAM_015920 -52 4.8 ATGAAAGCGCAGTCTA
Bacillus licheniformis DSM 13 BLi01829 -53 4.8 ATGAAAGCGCAGTCTA
Bacillus pumilus SAFR-032 BPUM_1507 -57 4.8 ATGAAAGCGCAGTCTA
Bacillus subtilis subsp. subtilis str. 168 BSU16090 -51 4.8 ATGAAAGCGCAGTCTA
Geobacillus kaustophilus HTA426 GK1208 -47 4.2 ATGAAAGCGCTAAGAC
Position: -206
Score: 5.1
Sequence: TTGACAGCGTTTTCAA
Locus tag: GK1359
GK1359 -206 5.1 TTGACAGCGTTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpF
Ortholog function: Glycerol uptake facilitator protein
Bacillus cereus ATCC 14579 BC1034 -191 4.7 TTGACACCGCTTTCAT
Bacillus clausii KSM-K16 ABC3383 -198 4.2 ATGTATCCGTTTACAA
Bacillus licheniformis DSM 13 BLi00994 -207 4.5 TTGACAACGCTTTCAC
Bacillus pumilus SAFR-032 BPUM_0882 -191 4.9 TTGACAACGTTTTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU09280 -182 4.7 TTGACACCGCTTTCAT
Geobacillus kaustophilus HTA426 GK1359 -206 5.1 TTGACAGCGTTTTCAA
Oceanobacillus iheyensis HTE831 OB2476 -164 4.7 TTGACAACGCTTTCAG
Position: -103
Score: 4.9
Sequence: TTGAAAACGCTTCAAA
Locus tag: GK1597
GK1597 -103 4.9 TTGAAAACGCTTCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yngJ
Ortholog function: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Bacillus clausii KSM-K16 ABC1506 -77 4.6 TTGGTAACGCTTTCAT
Bacillus halodurans C-125 BH1130 -105 4.7 TTGGTAGCGCTTACAT
Geobacillus kaustophilus HTA426 GK1597 -103 4.9 TTGAAAACGCTTCAAA
Position: -9
Score: 4.4
Sequence: ATGAAAACGATGCCAA
Locus tag: GK1855
GK1855 -9 4.4 ATGAAAACGATGCCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gmuR
Ortholog function: Transcriptional regulator of glucomannan utilization, GntR family
Bacillus halodurans C-125 BH3917 -36 4.2 GTGAAAGCGCTTATCA
Bacillus licheniformis DSM 13 BLi02559 -34 4.8 GTGAAAGCGCTTTTAA
Bacillus pumilus SAFR-032 BPUM_2117 -37 4.2 CTGGAAGCGCTTTTAT
Bacillus subtilis subsp. subtilis str. 168 BSU05850 -33 5 ATGTAAGCGTTTTAAT
Geobacillus kaustophilus HTA426 GK1855 -50 4.8 TTGAAAACGATATCAT
Position: -50
Score: 4.8
Sequence: TTGAAAACGATATCAT
Locus tag: GK1859
GK1859 -50 4.8 TTGAAAACGATATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gmuB
Ortholog function: PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
Bacillus amyloliquefaciens FZB42 RBAM_035870 -38 4.7 ATGAAAACGTTTTAAC
Bacillus clausii KSM-K16 ABC0481 -60 4.9 TTGTAAGCGGATTCAT
Bacillus halodurans C-125 BH3921 -36 4.2 GTGAAAGCGCTTATCA
Bacillus licheniformis DSM 13 BLi02564 -34 4.8 GTGAAAGCGCTTTTAA
Bacillus pumilus SAFR-032 BPUM_2121 -37 4.2 CTGGAAGCGCTTTTAT
Bacillus subtilis subsp. subtilis str. 168 BSU05810 -33 5 ATGTAAGCGTTTTAAT
Geobacillus kaustophilus HTA426 GK1859 -50 4.8 TTGAAAACGATATCAT
Oceanobacillus iheyensis HTE831 OB2760 -62 4.8 TTGTAACCGTTTTCTT
Position: -59
Score: 5
Sequence: ATGAAAGCGTTATAAT
Locus tag: GK1875
GK1875 -59 5 ATGAAAGCGTTATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylA
Ortholog function: Xylose isomerase (EC 5.3.1.5)
Bacillus amyloliquefaciens FZB42 RBAM_017350 34 5.1 TTGAAAGCGCAAACAA
Bacillus clausii KSM-K16 ABC0572 -72 4.7 TTGACACCGCTTACAA
Bacillus halodurans C-125 BH2757 -33 4.7 TTGATAACGCTTACTT
Bacillus licheniformis DSM 13 BLi04048 -109 4.5 TTGAAAGCGATTAATT
Bacillus subtilis subsp. subtilis str. 168 BSU17600 34 4.7 TTGGAAGCGCAAACAA
Geobacillus kaustophilus HTA426 GK1875 -59 5 ATGAAAGCGTTATAAT
Position: -129
Score: 4.4
Sequence: TTGAAAACGCTTCAAC
Locus tag: GK1910
GK1910 -129 4.4 TTGAAAACGCTTCAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: araF
Ortholog function: L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2)
Bacillus clausii KSM-K16 ABC0409 -35 5.4 TTGAAAGCGTTATCAA
Bacillus halodurans C-125 BH3442 -64 5 ATGACAACGCTTTCAT
Bacillus licheniformis DSM 13 BLi00442 -128 4.8 ATGTAAGCGCTTCAAA
Geobacillus kaustophilus HTA426 GK1910 -129 4.4 TTGAAAACGCTTCAAC
Position: -50
Score: 4.5
Sequence: ATGAAAACGCTTTTGA
Locus tag: GK1942
GK1942 -50 4.5 ATGAAAACGCTTTTGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: endR
Ortholog function: Probable HTH-type transcriptional regulator endR, LacI family
Bacillus amyloliquefaciens FZB42 RBAM_018000 0 4.3 ATGAAAGCGGTTCTAG
Geobacillus kaustophilus HTA426 GK1942 -50 4.5 ATGAAAACGCTTTTGA
Position: -54
Score: 4.8
Sequence: TTGTAAGCGTTTTAAG
Locus tag: GK1948
GK1948 -54 4.8 TTGTAAGCGTTTTAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtlA
Ortholog function: PTS family mannitol-permease II, BC component
Anoxybacillus flavithermus WK1 Aflv_1566 -58 4.5 CTGTAAGCGCTTTAAT
Bacillus amyloliquefaciens FZB42 RBAM_004230 -96 4.6 TTGTAAGCGTTTTATG
Bacillus halodurans C-125 BH3854 -39 4.3 ATGAGAGCGCTTTATT
Bacillus licheniformis DSM 13 BLi00505 -94 4.4 CTGTAAGCGTTTTAAT
Bacillus pumilus SAFR-032 BPUM_0369 -106 4.1 GTGAAAGCGTTTTACG
Bacillus subtilis subsp. subtilis str. 168 BSU03981 -95 4 CTGTAAGCGTTTTAAC
Geobacillus kaustophilus HTA426 GK1948 -54 4.8 TTGTAAGCGTTTTAAG
Oceanobacillus iheyensis HTE831 OB2603 -75 4.4 TTGTAAGCGGATTCCT
Paenibacillus sp. JDR-2 Pjdr2_6226 -33 4.1 AAGAAAGCGATTTTAT
Position: -43
Score: 4.6
Sequence: AAGAAAGCGGTTTCTT
Locus tag: GK2371
GK2371 -43 4.6 AAGAAAGCGGTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mutA
Ortholog function: Methylmalonyl-CoA mutase (EC 5.4.99.2)
Anoxybacillus flavithermus WK1 Aflv_0966 -39 4.3 AAGAAAGCGTTTTAAC
Geobacillus kaustophilus HTA426 GK2371 -43 4.6 AAGAAAGCGGTTTCTT
Geobacillus kaustophilus HTA426 GK2370 -43 4.6 AAGAAAGCGGTTTCTT
Position: -165
Score: 5.1
Sequence: ATGTAAGCGCATTCAA
Locus tag: GK2662
GK2662 -165 5.1 ATGTAAGCGCATTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dat
Ortholog function: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Anoxybacillus flavithermus WK1 Aflv_0590 -170 4.8 ATGTAAGCGGATACAT
Bacillus cereus ATCC 14579 BC1396 -153 5 TTGTAAACGTTAACAA
Bacillus licheniformis DSM 13 BLi02962 -225 5 ATGTAAGCGTATACAA
Bacillus pumilus SAFR-032 BPUM_2473 -200 4.6 GTGTAAGCGTATACAT
Geobacillus kaustophilus HTA426 GK2662 -165 5.1 ATGTAAGCGCATTCAA
Position: -41
Score: 4.6
Sequence: TTGAAAGGGGTTTCAA
Locus tag: GK3207
GK3207 -41 4.6 TTGAAAGGGGTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH3845
Ortholog function: Predicted beta-glucoside-regulated ABC transport system, sugar-binding protein
Bacillus halodurans C-125 BH3845 -81 4.9 ATGAAAGCGATTTCTT
24 4.6 ATGATAGCGCTTTCTG
Bacillus pumilus SAFR-032 BPUM_3238 -37 4.9 TTGATAACGCTTACAA
Geobacillus kaustophilus HTA426 GK3207 -41 4.6 TTGAAAGGGGTTTCAA
Position: -40
Score: 4.6
Sequence: TTGTAATCGCTTTCTT
Locus tag: GK3397
GK3397 -40 4.6 TTGTAATCGCTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mmgA
Ortholog function: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Anoxybacillus flavithermus WK1 Aflv_2739 -16 4.7 TTGAAAGGGCTTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_022450 -43 4.6 GTGTAAGCGTTATCTT
Bacillus halodurans C-125 BH3801 -65 5 ATGTAAGCGCTTAAAT
Bacillus pumilus SAFR-032 BPUM_3373 -32 4.9 ATGTAAGCGGTAACAA
Bacillus subtilis subsp. subtilis str. 168 BSU24170 -37 4.9 TTGTAAGCGCTGTCTA
Geobacillus kaustophilus HTA426 GK3397 -40 4.6 TTGTAATCGCTTTCTT
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