Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of SphR regulog to Trichodesmium erythraeum IMS101

Reference regulog properties
Source regulog: SphR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: OmpR
Regulation mode: repressor (activator)
Biological process: Phosphate metabolism
Effector: Inorganic phosphate
Phylum: Cyanobacteria
Propagated regulon:
Target genome Trichodesmium erythraeum IMS101
Orthologous TF(s) Tery_2902
Regulated genes 8
Built upon 77 sites [see more]
Predicted regulatory interactions in Trichodesmium erythraeum IMS101
Locus tag Position Score Sequence
Position: -336
Score: 6.5
Sequence: TTTTAGAT-(3)-GTTTTTGT-(3)-CATTATCA
Locus tag: Tery_0682
Tery_0682 -336 6.5 TTTTAGAT-(3)-GTTTTTGT-(3)-CATTATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fbp
Ortholog function: Fructose 1,6-bisphosphatase I (EC 3.1.3.11)
Cyanothece sp. ATCC 51142 cce_4758 -125 8.3 ATTAACCT-(3)-CTGAAATT-(3)-CTAAAGTT
Cyanothece sp. PCC 8801 PCC8801_0430 -278 7.9 TTAAAATT-(3)-TTTTATTT-(3)-CTTTTATT
Microcystis aeruginosa NIES-843 MAE_23860 -129 7.6 ATTAGCCA-(3)-CTAAAACT-(3)-CTAAAAAT
Nostoc sp. PCC 7120 all4021 -136 7 CGTAAACT-(3)-GATTTCTT-(3)-TTTATCTA
Trichodesmium erythraeum IMS101 Tery_0682 -336 6.5 TTTTAGAT-(3)-GTTTTTGT-(3)-CATTATCA
Position: -250
Score: 8.3
Sequence: TTAAAACT-(3)-CTTAATCT-(3)-ACTAACTC
Locus tag: Tery_0739
Tery_0739 -250 8.3 TTAAAACT-(3)-CTTAATCT-(3)-ACTAACTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: rsbU
Ortholog function: Protein serine/threonine phosphatase
Cyanothece sp. PCC 8801 PCC8801_3662 -162 7.4 ATTAACGC-(3)-GATTAACC-(3)-CCTAATTA
Nostoc sp. PCC 7120 all1758 -49 7.5 ATTTATTA-(3)-GTCAATCT-(3)-ATTAACCC
Trichodesmium erythraeum IMS101 Tery_0739 -250 8.3 TTAAAACT-(3)-CTTAATCT-(3)-ACTAACTC
Position: -309
Score: 8.3
Sequence: ATTAACCA-(3)-ATTGAATT-(3)-ATTGACTT
Locus tag: Tery_0954
Tery_0954 -309 8.3 ATTAACCA-(3)-ATTGAATT-(3)-ATTGACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A0979
Ortholog function: Transcription regulator, OmpR family
Cyanothece sp. PCC 8801 PCC8801_2302 -232 7.1 CATAATGA-(3)-TTTTAAGA-(3)-GTTAAAAA
Nostoc sp. PCC 7120 all3822 -149 8.6 CTTAATTT-(3)-CTTAAGTA-(3)-CTCAAATT
Trichodesmium erythraeum IMS101 Tery_0954 -309 8.3 ATTAACCA-(3)-ATTGAATT-(3)-ATTGACTT
Position: -208
Score: 7.5
Sequence: GATAAGAT-(3)-ATTAACCT-(3)-GTTTGCTA
Locus tag: Tery_2568
Tery_2568 -208 7.5 GATAAGAT-(3)-ATTAACCT-(3)-GTTTGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A2263
Ortholog function: Conserved hypothetical protein
Cyanothece sp. PCC 7425 Cyan7425_4387 -102 7.5 ATTATCAT-(3)-TATTACCT-(3)-CCTTACCC
Nostoc sp. PCC 7120 alr5259 -329 8.7 GTAAAACT-(3)-TTTATTTA-(3)-CTTAATTT
Trichodesmium erythraeum IMS101 Tery_2568 -208 7.5 GATAAGAT-(3)-ATTAACCT-(3)-GTTTGCTA
Position: -192
Score: 9.7
Sequence: TTTGATAT-(3)-TTTAACCT-(3)-CTTAATCT
Locus tag: Tery_3534
Tery_3534 -192 9.7 TTTGATAT-(3)-TTTAACCT-(3)-CTTAATCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pstS
Ortholog function: Phosphate ABC transporter, substrate-binding protein
Trichodesmium erythraeum IMS101 Tery_3534 -192 9.7 TTTGATAT-(3)-TTTAACCT-(3)-CTTAATCT
Position: -342
Score: 7.8
Sequence: TTTTAATA-(3)-AATTACCC-(3)-CTTAGCCT
Locus tag: Tery_3661
Tery_3661 -342 7.8 TTTTAATA-(3)-AATTACCC-(3)-CTTAGCCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndbB
Ortholog function: Type 2 NADH dehydrogenase
Synechococcus sp. PCC 7002 SYNPCC7002_A2120 -309 7.6 CTAAAATT-(3)-TTTTACTA-(3)-TTTGATCA
Cyanothece sp. ATCC 51142 cce_0154 -83 7.6 TTTTATCT-(3)-GATAATTA-(3)-ATTAATGA
Trichodesmium erythraeum IMS101 Tery_3661 -342 7.8 TTTTAATA-(3)-AATTACCC-(3)-CTTAGCCT
Position: -97
Score: 8.3
Sequence: GTTAAGGA-(3)-CTTAAAGT-(3)-TTTAAGCT
Locus tag: Tery_3699
Tery_3699 -97 8.3 GTTAAGGA-(3)-CTTAAAGT-(3)-TTTAAGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: purF
Ortholog function: Amidophosphoribosyltransferase (EC 2.4.2.14)
Cyanothece sp. ATCC 51142 cce_1211 -143 7.7 TATAATCT-(3)-GTTTTATT-(3)-GTCTATTT
Cyanothece sp. PCC 8801 PCC8801_4178 -104 7.5 GATAAGAT-(3)-GTTAAAGA-(3)-GTTAAAAT
Nostoc sp. PCC 7120 all3651 -119 7.7 TTTAATAT-(3)-GTTAAAGA-(3)-GTTAAGAC
Trichodesmium erythraeum IMS101 Tery_3699 -97 8.3 GTTAAGGA-(3)-CTTAAAGT-(3)-TTTAAGCT
Synechococcus elongatus PCC 7942 Synpcc7942_0004 -76 7.8 GTTAAGTC-(3)-GTTAAATT-(3)-ATTAGCCG
Position: -158
Score: 7
Sequence: CTTGACAA-(3)-AATAAATT-(3)-GTTAAAGA
Locus tag: Tery_4937
Tery_4937 -158 7 CTTGACAA-(3)-AATAAATT-(3)-GTTAAAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpaA
Ortholog function: Transcription regulator, OmpR family
Synechocystis sp. PCC 6803 slr0115 -174 7 ATTACCCA-(3)-TTTAGATG-(3)-TTTTTCTT
Nostoc sp. PCC 7120 all0129 -101 7.3 TTTATGTT-(3)-TTTAAAAT-(3)-TTTTATAA
Trichodesmium erythraeum IMS101 Tery_4937 -158 7 CTTGACAA-(3)-AATAAATT-(3)-GTTAAAGA
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