Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of SphR regulog to Cyanothece sp. ATCC 51142

Reference regulog properties
Source regulog: SphR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: OmpR
Regulation mode: repressor (activator)
Biological process: Phosphate metabolism
Effector: Inorganic phosphate
Phylum: Cyanobacteria
Propagated regulon:
Target genome Cyanothece sp. ATCC 51142
Orthologous TF(s) cce_3960
Regulated genes 11
Built upon 77 sites [see more]
Predicted regulatory interactions in Cyanothece sp. ATCC 51142
Locus tag Position Score Sequence
Position: -70
Score: 8.4
Sequence: GATAAAAA-(3)-CATAAAGT-(3)-CTTAAACT
Locus tag: cce_5174
cce_5174 -70 8.4 GATAAAAA-(3)-CATAAAGT-(3)-CTTAAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppk
Ortholog function: Polyphosphate kinase (EC 2.7.4.1)
Cyanothece sp. ATCC 51142 cce_5174 -70 8.4 GATAAAAA-(3)-CATAAAGT-(3)-CTTAAACT
Cyanothece sp. PCC 8801 PCC8801_1625 -95 7.2 TATTACCT-(3)-TATAGCCT-(3)-GATAGCCT
Cyanothece sp. PCC 7425 Cyan7425_1977 -238 8.4 GTTATCCC-(3)-GTTAATTT-(3)-ATTAAATC
Position: -74
Score: 9.6
Sequence: GTTAATTT-(3)-TTTAATCA-(3)-CTTAAAAT
Locus tag: cce_5183
cce_5183 -74 9.6 GTTAATTT-(3)-TTTAATCA-(3)-CTTAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: Acetate kinase (EC 2.7.2.1)
Cyanothece sp. ATCC 51142 cce_5183 -74 9.6 GTTAATTT-(3)-TTTAATCA-(3)-CTTAAAAT
Cyanothece sp. PCC 8801 PCC8801_3887 -183 9.1 CTTTGACC-(3)-GTTTACCA-(3)-CTTAACCT
Microcystis aeruginosa NIES-843 MAE_02800 -66 8.8 TTTTATCT-(3)-CTTAACCT-(3)-TTTGATTA
Position: -83
Score: 7.6
Sequence: TTTTATCT-(3)-GATAATTA-(3)-ATTAATGA
Locus tag: cce_0154
cce_0154 -83 7.6 TTTTATCT-(3)-GATAATTA-(3)-ATTAATGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndbB
Ortholog function: Type 2 NADH dehydrogenase
Synechococcus sp. PCC 7002 SYNPCC7002_A2120 -309 7.6 CTAAAATT-(3)-TTTTACTA-(3)-TTTGATCA
Cyanothece sp. ATCC 51142 cce_0154 -83 7.6 TTTTATCT-(3)-GATAATTA-(3)-ATTAATGA
Trichodesmium erythraeum IMS101 Tery_3661 -342 7.8 TTTTAATA-(3)-AATTACCC-(3)-CTTAGCCT
Position: -53
Score: 7.5
Sequence: GTTAGATT-(3)-CTTTAAGA-(3)-GTTTAGTT
Locus tag: cce_0886
cce_0886 -53 7.5 GTTAGATT-(3)-CTTTAAGA-(3)-GTTTAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pstS
Ortholog function: Phosphate ABC transporter, substrate-binding protein
Cyanothece sp. ATCC 51142 cce_0886 -358 6.9 CTTGAAAA-(3)-TATAAATA-(3)-GTTATCAT
-53 7.5 GTTAGATT-(3)-CTTTAAGA-(3)-GTTTAGTT
Microcystis aeruginosa NIES-843 MAE_18380 -87 9.5 TTTATTCA-(3)-CTTAACCT-(3)-CTTTACCA
Position: -109
Score: 9.7
Sequence: CTTAATCT-(3)-TTTTACTG-(3)-TTTAACCC
Locus tag: cce_1163
cce_1163 -109 9.7 CTTAATCT-(3)-TTTTACTG-(3)-TTTAACCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pstS
Ortholog function: Phosphate ABC transporter, substrate-binding protein
Cyanothece sp. ATCC 51142 cce_1163 -109 9.7 CTTAATCT-(3)-TTTTACTG-(3)-TTTAACCC
Cyanothece sp. PCC 8801 PCC8801_1024 -108 9.8 TTTTATCA-(3)-GTTTACCT-(3)-CTTAACCC
Thermosynechococcus elongatus BP-1 tlr2164 -51 10.9 TTTAAACA-(3)-TTTTACCT-(3)-CTTAACTT
Position: -143
Score: 7.7
Sequence: TATAATCT-(3)-GTTTTATT-(3)-GTCTATTT
Locus tag: cce_1211
cce_1211 -143 7.7 TATAATCT-(3)-GTTTTATT-(3)-GTCTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: purF
Ortholog function: Amidophosphoribosyltransferase (EC 2.4.2.14)
Cyanothece sp. ATCC 51142 cce_1211 -143 7.7 TATAATCT-(3)-GTTTTATT-(3)-GTCTATTT
Cyanothece sp. PCC 8801 PCC8801_4178 -104 7.5 GATAAGAT-(3)-GTTAAAGA-(3)-GTTAAAAT
Nostoc sp. PCC 7120 all3651 -119 7.7 TTTAATAT-(3)-GTTAAAGA-(3)-GTTAAGAC
Trichodesmium erythraeum IMS101 Tery_3699 -97 8.3 GTTAAGGA-(3)-CTTAAAGT-(3)-TTTAAGCT
Synechococcus elongatus PCC 7942 Synpcc7942_0004 -76 7.8 GTTAAGTC-(3)-GTTAAATT-(3)-ATTAGCCG
Position: -141
Score: 8.8
Sequence: CTTAATAA-(3)-GTTTAACT-(3)-CTTCATAT
Locus tag: cce_1859
cce_1859 -141 8.8 CTTAATAA-(3)-GTTTAACT-(3)-CTTCATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sphX
Ortholog function: Phosphate ABC transport system, substrate-binding protein
Synechocystis sp. PCC 6803 sll0679 -135 10.9 TTTAACCA-(3)-CTTTACTA-(3)-CTTAACCT
Cyanothece sp. ATCC 51142 cce_1859 -141 8.8 CTTAATAA-(3)-GTTTAACT-(3)-CTTCATAT
Cyanothece sp. PCC 8801 PCC8801_4067 -157 8.1 CTTAGCAT-(3)-CTTTTTCT-(3)-GCTAAACT
Position: -44
Score: 8.4
Sequence: CTTATCTA-(3)-CTTTATTT-(3)-TTTATACT
Locus tag: cce_3317
cce_3317 -44 8.4 CTTATCTA-(3)-CTTTATTT-(3)-TTTATACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A1357
Ortholog function: Conserved hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A1357 -125 7.8 GCTAACCT-(3)-CTATATTT-(3)-TTTTATTT
Cyanothece sp. ATCC 51142 cce_3317 -44 8.4 CTTATCTA-(3)-CTTTATTT-(3)-TTTATACT
Cyanothece sp. PCC 8801 PCC8801_1847 -43 7.5 AATAAATT-(3)-TCTTATTT-(3)-ATTATCTT
Trichodesmium erythraeum IMS101 Tery_4322 -395 7 CTTATTAT-(3)-AATTATTT-(3)-ATTTAGCT
Thermosynechococcus elongatus BP-1 null -268 7.1 ATTAAAAA-(3)-ATTAAAAA-(3)-TTTCTCTT
Position: -283
Score: 8
Sequence: CTTATAAA-(3)-CTTAACCT-(3)-AATAATTT
Position: -226
Score: 8.4
Sequence: CTTTACCA-(3)-TTTAACCC-(3)-TATTATTT
Position: -215
Score: 9.5
Sequence: TTTAACCC-(3)-TATTATTT-(3)-TTTAATCA
Locus tag: cce_3495
cce_3495 -283 8 CTTATAAA-(3)-CTTAACCT-(3)-AATAATTT
-226 8.4 CTTTACCA-(3)-TTTAACCC-(3)-TATTATTT
-215 9.5 TTTAACCC-(3)-TATTATTT-(3)-TTTAATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: phoD
Ortholog function: Phosphodiesterase/alkaline phosphatase D
Nostoc sp. PCC 7120 all0207 -98 9.3 ATTAACCC-(3)-GATAACTC-(3)-CTTTACTT
Synechococcus sp. JA-3-3Ab CYA_2506 -129 7.9 CTTAAACA-(3)-GCTAACCC-(3)-TTTCACCG
Position: -88
Score: 8.7
Sequence: TTTAAAGT-(3)-TTTAACAT-(3)-CTTTAAAT
Locus tag: cce_4621
cce_4621 -88 8.7 TTTAAAGT-(3)-TTTAACAT-(3)-CTTTAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: phoA
Ortholog function: Alkaline phosphatase
Synechocystis sp. PCC 6803 sll0654 -210 7.3 TTTTACTT-(3)-CTTTCCCT-(3)-GTTAGCAA
-175 8.8 CTTAACCT-(3)-CATAGTCT-(3)-CATAAGTT
Cyanothece sp. ATCC 51142 cce_4621 -88 8.7 TTTAAAGT-(3)-TTTAACAT-(3)-CTTTAAAT
Synechococcus elongatus PCC 7942 Synpcc7942_1392 -233 9.4 TTTAACTA-(3)-CATAATCT-(3)-CTCAATCT
Position: -131
Score: 7.7
Sequence: TTAAACAT-(3)-CCTAACCT-(3)-ATTCATCT
Position: -125
Score: 8.3
Sequence: ATTAACCT-(3)-CTGAAATT-(3)-CTAAAGTT
Locus tag: cce_4758
cce_4758 -131 7.7 TTAAACAT-(3)-CCTAACCT-(3)-ATTCATCT
-125 8.3 ATTAACCT-(3)-CTGAAATT-(3)-CTAAAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fbp
Ortholog function: Fructose 1,6-bisphosphatase I (EC 3.1.3.11)
Cyanothece sp. ATCC 51142 cce_4758 -125 8.3 ATTAACCT-(3)-CTGAAATT-(3)-CTAAAGTT
Cyanothece sp. PCC 8801 PCC8801_0430 -278 7.9 TTAAAATT-(3)-TTTTATTT-(3)-CTTTTATT
Microcystis aeruginosa NIES-843 MAE_23860 -129 7.6 ATTAGCCA-(3)-CTAAAACT-(3)-CTAAAAAT
Nostoc sp. PCC 7120 all4021 -136 7 CGTAAACT-(3)-GATTTCTT-(3)-TTTATCTA
Trichodesmium erythraeum IMS101 Tery_0682 -336 6.5 TTTTAGAT-(3)-GTTTTTGT-(3)-CATTATCA