Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of SphR regulog to Cyanothece sp. PCC 7424

Reference regulog properties
Source regulog: SphR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: OmpR
Regulation mode: repressor (activator)
Biological process: Phosphate metabolism
Effector: Inorganic phosphate
Phylum: Cyanobacteria
Propagated regulon:
Target genome Cyanothece sp. PCC 7424
Orthologous TF(s) PCC7424_3600
Regulated genes 5
Built upon 77 sites [see more]
Predicted regulatory interactions in Cyanothece sp. PCC 7424
Locus tag Position Score Sequence
Position: -170
Score: 8.3
Sequence: ATTAATAA-(3)-AATAATCA-(3)-GTTAACTC
Locus tag: PCC7424_1280
PCC7424_1280 -170 8.3 ATTAATAA-(3)-AATAATCA-(3)-GTTAACTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppk
Ortholog function: Polyphosphate kinase (EC 2.7.4.1)
Cyanothece sp. ATCC 51142 cce_5174 -70 8.4 GATAAAAA-(3)-CATAAAGT-(3)-CTTAAACT
Cyanothece sp. PCC 8801 PCC8801_1625 -95 7.2 TATTACCT-(3)-TATAGCCT-(3)-GATAGCCT
Cyanothece sp. PCC 7425 Cyan7425_1977 -238 8.4 GTTATCCC-(3)-GTTAATTT-(3)-ATTAAATC
Position: -156
Score: 9.9
Sequence: TTTAATCT-(3)-TATTATCT-(3)-TTTAACCA
Locus tag: PCC7424_2809
PCC7424_2809 -156 9.9 TTTAATCT-(3)-TATTATCT-(3)-TTTAACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pstS
Ortholog function: Phosphate ABC transporter, substrate-binding protein
Synechocystis sp. PCC 6803 slr1247 -342 10.5 CTTAATCT-(3)-CTTAATTC-(3)-CTTAATTT
Microcystis aeruginosa NIES-843 MAE_18310 -139 9.6 ATTAACCG-(3)-TTTTACCG-(3)-CTTAACCA
Nostoc sp. PCC 7120 all0911 -105 10.8 CTTAACTT-(3)-GTTTACCT-(3)-CTTAACTT
Synechococcus sp. JA-3-3Ab CYA_1732 -75 9.6 GTTAACCT-(3)-GATATCCT-(3)-GTTAACTT
Position: -202
Score: 10.1
Sequence: CTTAATTT-(3)-TTTAATTT-(3)-CTTAATTA
Locus tag: PCC7424_3593
PCC7424_3593 -202 10.1 CTTAATTT-(3)-TTTAATTT-(3)-CTTAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: phoA
Ortholog function: Alkaline phosphatase
Synechocystis sp. PCC 6803 sll0654 -210 7.3 TTTTACTT-(3)-CTTTCCCT-(3)-GTTAGCAA
-175 8.8 CTTAACCT-(3)-CATAGTCT-(3)-CATAAGTT
Cyanothece sp. ATCC 51142 cce_4621 -88 8.7 TTTAAAGT-(3)-TTTAACAT-(3)-CTTTAAAT
Synechococcus elongatus PCC 7942 Synpcc7942_1392 -233 9.4 TTTAACTA-(3)-CATAATCT-(3)-CTCAATCT
Position: -101
Score: 8.7
Sequence: ATTAGACA-(3)-TTTAATCT-(3)-GATTACCT
Position: -90
Score: 9.7
Sequence: TTTAATCT-(3)-GATTACCT-(3)-GTTTACCT
Locus tag: PCC7424_3970
PCC7424_3970 -101 8.7 ATTAGACA-(3)-TTTAATCT-(3)-GATTACCT
-90 9.7 TTTAATCT-(3)-GATTACCT-(3)-GTTTACCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysR
Ortholog function: Transcription regulator, Fnr-Crp family
Synechococcus sp. PCC 7002 SYNPCC7002_A1232 -126 8.7 CTTAAACT-(3)-GATTACAT-(3)-ATTTAACT
Cyanothece sp. PCC 8801 PCC8801_0346 -91 9.7 TTTAATCT-(3)-GATTACCT-(3)-GTTTACCT
Microcystis aeruginosa NIES-843 MAE_18440 -86 9.6 GTTAATCT-(3)-GATTACCT-(3)-GTTTACCT
Position: -110
Score: 7.9
Sequence: ATTTAAAT-(3)-GTTAAAAA-(3)-GTTAAGCT
Locus tag: PCC7424_4318
PCC7424_4318 -110 7.9 ATTTAAAT-(3)-GTTAAAAA-(3)-GTTAAGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: purF
Ortholog function: Amidophosphoribosyltransferase (EC 2.4.2.14)
Cyanothece sp. ATCC 51142 cce_1211 -143 7.7 TATAATCT-(3)-GTTTTATT-(3)-GTCTATTT
Cyanothece sp. PCC 8801 PCC8801_4178 -104 7.5 GATAAGAT-(3)-GTTAAAGA-(3)-GTTAAAAT
Nostoc sp. PCC 7120 all3651 -119 7.7 TTTAATAT-(3)-GTTAAAGA-(3)-GTTAAGAC
Trichodesmium erythraeum IMS101 Tery_3699 -97 8.3 GTTAAGGA-(3)-CTTAAAGT-(3)-TTTAAGCT
Synechococcus elongatus PCC 7942 Synpcc7942_0004 -76 7.8 GTTAAGTC-(3)-GTTAAATT-(3)-ATTAGCCG
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