Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of SphR regulog to Synechococcus sp. PCC 7002

Reference regulog properties
Source regulog: SphR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: OmpR
Regulation mode: repressor (activator)
Biological process: Phosphate metabolism
Effector: Inorganic phosphate
Phylum: Cyanobacteria
Propagated regulon:
Target genome Synechococcus sp. PCC 7002
Orthologous TF(s) SYNPCC7002_A0851
Regulated genes 4
Built upon 77 sites [see more]
Predicted regulatory interactions in Synechococcus sp. PCC 7002
Locus tag Position Score Sequence
Position: -126
Score: 8.7
Sequence: CTTAAACT-(3)-GATTACAT-(3)-ATTTAACT
Locus tag: SYNPCC7002_A1232
SYNPCC7002_A1232 -126 8.7 CTTAAACT-(3)-GATTACAT-(3)-ATTTAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysR
Ortholog function: Transcription regulator, Fnr-Crp family
Synechococcus sp. PCC 7002 SYNPCC7002_A1232 -126 8.7 CTTAAACT-(3)-GATTACAT-(3)-ATTTAACT
Cyanothece sp. PCC 8801 PCC8801_0346 -91 9.7 TTTAATCT-(3)-GATTACCT-(3)-GTTTACCT
Microcystis aeruginosa NIES-843 MAE_18440 -86 9.6 GTTAATCT-(3)-GATTACCT-(3)-GTTTACCT
Position: -125
Score: 7.8
Sequence: GCTAACCT-(3)-CTATATTT-(3)-TTTTATTT
Locus tag: SYNPCC7002_A1357
SYNPCC7002_A1357 -125 7.8 GCTAACCT-(3)-CTATATTT-(3)-TTTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SYNPCC7002_A1357
Ortholog function: Conserved hypothetical protein
Synechococcus sp. PCC 7002 SYNPCC7002_A1357 -125 7.8 GCTAACCT-(3)-CTATATTT-(3)-TTTTATTT
Cyanothece sp. ATCC 51142 cce_3317 -44 8.4 CTTATCTA-(3)-CTTTATTT-(3)-TTTATACT
Cyanothece sp. PCC 8801 PCC8801_1847 -43 7.5 AATAAATT-(3)-TCTTATTT-(3)-ATTATCTT
Trichodesmium erythraeum IMS101 Tery_4322 -395 7 CTTATTAT-(3)-AATTATTT-(3)-ATTTAGCT
Thermosynechococcus elongatus BP-1 null -268 7.1 ATTAAAAA-(3)-ATTAAAAA-(3)-TTTCTCTT
Position: -309
Score: 7.6
Sequence: CTAAAATT-(3)-TTTTACTA-(3)-TTTGATCA
Locus tag: SYNPCC7002_A2120
SYNPCC7002_A2120 -309 7.6 CTAAAATT-(3)-TTTTACTA-(3)-TTTGATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndbB
Ortholog function: Type 2 NADH dehydrogenase
Synechococcus sp. PCC 7002 SYNPCC7002_A2120 -309 7.6 CTAAAATT-(3)-TTTTACTA-(3)-TTTGATCA
Cyanothece sp. ATCC 51142 cce_0154 -83 7.6 TTTTATCT-(3)-GATAATTA-(3)-ATTAATGA
Trichodesmium erythraeum IMS101 Tery_3661 -342 7.8 TTTTAATA-(3)-AATTACCC-(3)-CTTAGCCT
Position: -91
Score: 9.5
Sequence: ATTAAACT-(3)-CTTAGTTT-(3)-TTTAACTC
Locus tag: SYNPCC7002_A2352
SYNPCC7002_A2352 -91 9.5 ATTAAACT-(3)-CTTAGTTT-(3)-TTTAACTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: phoA1
Ortholog function: Alkaline phosphatase
Synechococcus sp. PCC 7002 SYNPCC7002_A2352 -182 7.5 ATTTAATT-(3)-TTTAGTTG-(3)-CTTAGCTA
-91 9.5 ATTAAACT-(3)-CTTAGTTT-(3)-TTTAACTC
Cyanothece sp. PCC 7425 Cyan7425_4261 -146 9 ATTAATCA-(3)-GTTTACCT-(3)-CATAAATC
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