Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of SphR regulog to Synechococcus sp. JA-3-3Ab

Reference regulog properties
Source regulog: SphR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: OmpR
Regulation mode: repressor (activator)
Biological process: Phosphate metabolism
Effector: Inorganic phosphate
Phylum: Cyanobacteria
Propagated regulon:
Target genome Synechococcus sp. JA-3-3Ab
Orthologous TF(s) CYA_1033
Regulated genes 4
Built upon 77 sites [see more]
Predicted regulatory interactions in Synechococcus sp. JA-3-3Ab
Locus tag Position Score Sequence
Position: -172
Score: 10.5
Sequence: CTTAACCT-(3)-CATAACCT-(3)-CTTTACTT
Locus tag: CYA_1541
CYA_1541 -172 10.5 CTTAACCT-(3)-CATAACCT-(3)-CTTTACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysR
Ortholog function: Transcription regulator, Fnr-Crp family
Synechococcus sp. JA-3-3Ab CYA_1541 -172 10.5 CTTAACCT-(3)-CATAACCT-(3)-CTTTACTT
Position: -203
Score: 10.2
Sequence: AATAACCT-(3)-TTTAACCT-(3)-GTTAACCA
Locus tag: CYA_1552
CYA_1552 -203 10.2 AATAACCT-(3)-TTTAACCT-(3)-GTTAACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pstS
Ortholog function: Phosphate ABC transporter, substrate-binding protein
Synechococcus sp. JA-3-3Ab CYA_1552 -203 10.2 AATAACCT-(3)-TTTAACCT-(3)-GTTAACCA
Position: -75
Score: 9.6
Sequence: GTTAACCT-(3)-GATATCCT-(3)-GTTAACTT
Locus tag: CYA_1732
CYA_1732 -75 9.6 GTTAACCT-(3)-GATATCCT-(3)-GTTAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pstS
Ortholog function: Phosphate ABC transporter, substrate-binding protein
Synechocystis sp. PCC 6803 slr1247 -342 10.5 CTTAATCT-(3)-CTTAATTC-(3)-CTTAATTT
Microcystis aeruginosa NIES-843 MAE_18310 -139 9.6 ATTAACCG-(3)-TTTTACCG-(3)-CTTAACCA
Nostoc sp. PCC 7120 all0911 -105 10.8 CTTAACTT-(3)-GTTTACCT-(3)-CTTAACTT
Synechococcus sp. JA-3-3Ab CYA_1732 -75 9.6 GTTAACCT-(3)-GATATCCT-(3)-GTTAACTT
Position: -129
Score: 7.9
Sequence: CTTAAACA-(3)-GCTAACCC-(3)-TTTCACCG
Locus tag: CYA_2506
CYA_2506 -129 7.9 CTTAAACA-(3)-GCTAACCC-(3)-TTTCACCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: phoD
Ortholog function: Phosphodiesterase/alkaline phosphatase D
Nostoc sp. PCC 7120 all0207 -98 9.3 ATTAACCC-(3)-GATAACTC-(3)-CTTTACTT
Synechococcus sp. JA-3-3Ab CYA_2506 -129 7.9 CTTAAACA-(3)-GCTAACCC-(3)-TTTCACCG