Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Yersinia pestis Z176003

Reference regulog properties
Source regulog: Crp - Enterobacteriales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia pestis Z176003
Orthologous TF(s) YPZ3_0151
Regulated genes 193
Built upon 2301 sites [see more]
Predicted regulatory interactions in Yersinia pestis Z176003
Locus tag Position Score Sequence
Position: -111
Score: 4
Sequence: AAATGTGAGTTAGCAAAAAAAT
Position: -55
Score: 4.4
Sequence: TTTTGTGAGCCGGATCATTAAA
Locus tag: YPZ3_0032
YPZ3_0032 -111 4 AAATGTGAGTTAGCAAAAAAAT
-55 4.4 TTTTGTGAGCCGGATCATTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uraA1
Ortholog function: Xanthine permease
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04013 -143 3.7 TGATGCGATTTAGCATACAAAA
Enterobacter sp. 638 Ent638_0073 -169 3.7 CAAAATGATTCTTCGCACATAT
Yersinia pestis KIM y0107 -60 4 AAATGTGAGTTAGCAAAAAAAT
Edwardsiella tarda EIB202 ETAE_0025 -56 3.7 TTTTGTGGCGCAGATCATTAAA
Proteus mirabilis HI4320 PMI2868 -54 3.7 TTTTGTGGCGCAGATCATTAAA
Position: -139
Score: 4
Sequence: TTTCATGACGAATAACACATAT
Locus tag: YPZ3_0084
YPZ3_0084 -139 4 TTTCATGACGAATAACACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpF
Ortholog function: facilitator for glycerol uptake
Yersinia pestis KIM y0046 -139 4 TTTCATGACGAATAACACATAT
Serratia proteamaculans 568 Spro_4797 -183 4.1 TTTTATGACGAAGCACACACAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4266 -153 4.3 TTTTTTGACGCGCAACACACAT
Edwardsiella tarda EIB202 ETAE_3441 -139 3.9 TTTTTTGACGACACACACACAT
Position: -177
Score: 3.7
Sequence: TTCTGCGAGCCAGTTCGAAAAA
Position: -135
Score: 3.6
Sequence: TTATGCAAATTAGGTAACAAAT
Locus tag: YPZ3_0094
YPZ3_0094 -177 3.7 TTCTGCGAGCCAGTTCGAAAAA
-135 3.6 TTATGCAAATTAGGTAACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cytR
Ortholog function: transcriptional repressor
Escherichia coli str. K-12 substr. MG1655 b3934 -128 3.9 AAATTCAATATTCATCACACTT
Citrobacter koseri ATCC BAA-895 CKO_03060 -129 3.8 AAATTAAATATCCATCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04229 -162 3.6 TCTTGCGAGCCGGATCGAAAAA
-143 3.9 AAATTTAACAAGCATCACGTTT
Yersinia pestis KIM y0297 -177 3.7 TTCTGCGAGCCAGTTCGAAAAA
-135 3.6 TTATGCAAATTAGGTAACAAAT
Edwardsiella tarda EIB202 ETAE_3434 -258 4.2 AAGTGCGATCGGGATCGAAAAA
-175 3.6 ATATGTGATCATATACTCATCG
Proteus mirabilis HI4320 PMI3218 -207 4.3 TTTTGCGAACTACCTCATAAAA
-189 3.9 AAAAACGATTGGTATCACACTT
Photorhabdus luminescens subsp. laumondii TTO1 plu4760 -213 4.2 ATTTGCGAGCCATATCGAATAA
-195 4.6 ATAAATGATTTATATCACACTT
Position: -202
Score: 4.6
Sequence: AATTGTGATCCGTAGCAACTTA
Locus tag: YPZ3_0106
YPZ3_0106 -202 4.6 AATTGTGATCCGTAGCAACTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: malT
Ortholog function: transcriptional regulator MalT
Escherichia coli str. K-12 substr. MG1655 b3418 -142 4.3 AATTGTGACACAGTGCAAATTC
Salmonella typhimurium LT2 STM3515 -143 4.3 AATTGTGACAGAGTGCAAATTC
Citrobacter koseri ATCC BAA-895 CKO_04840 -142 4.3 AATTGTGACAGAGTGCAAATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03788 -142 4.4 ATTTGTGACATAGAGCAAATTC
Enterobacter sp. 638 Ent638_3831 -142 4.6 AATTGTGACAGAGTGCAAATTA
Yersinia pestis KIM y3900 -202 4.6 AATTGTGATCCGTAGCAACTTA
Serratia proteamaculans 568 Spro_4637 -203 4 AAGTGTGATCAATAGCAATATA
Edwardsiella tarda EIB202 ETAE_3303 -212 3.8 AAATGTGATCAGCCGCAATTTC
Position: -137
Score: 4.1
Sequence: TAAGTTGCTACGGATCACAATT
Locus tag: YPZ3_0107
YPZ3_0107 -137 4.1 TAAGTTGCTACGGATCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: malP
Ortholog function: maltodextrin phosphorylase
Escherichia coli str. K-12 substr. MG1655 b3417 -141 4.5 TTAAGTGGTTGAGATCACATTT
Citrobacter koseri ATCC BAA-895 CKO_04838 -139 4 TTAAGTGGCGGCGATCACACTT
Serratia proteamaculans 568 Spro_4636 -139 4.4 AAAAGTGCCTGAGATCACAATT
Position: -130
Score: 4.2
Sequence: ATTCGTGTTCCATCTCTCATAA
Position: -80
Score: 3.8
Sequence: ATATTTGATAGCTATCGCTGTT
Locus tag: YPZ3_0118
YPZ3_0118 -130 4.2 ATTCGTGTTCCATCTCTCATAA
-80 3.8 ATATTTGATAGCTATCGCTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pck
Ortholog function: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Escherichia coli str. K-12 substr. MG1655 b3403 -240 4.2 GAATGCGATTCCACTCACAATA
-137 4 TTTCGTGACAGGAATCACGGAG
Salmonella typhimurium LT2 STM3500 -241 4 GAATGCGATTACAGTCACATTA
-107 3.9 AATCGTGATTTTGTCCAGATAC
Citrobacter koseri ATCC BAA-895 CKO_04825 -107 3.9 AATCGTGATTTTGTCCAGATAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03773 -242 3.7 GAAAGCGATTACATTCACATTT
-138 3.7 CTTCGTGACAGGAGTCACCGTT
Enterobacter sp. 638 Ent638_3816 -241 4.1 GTATGCGATTACATTCACATTA
Yersinia pestis KIM y3918 -130 4.2 ATTCGTGTTCCATCTCTCATAA
-80 3.8 ATATTTGATAGCTATCGCTGTT
Serratia proteamaculans 568 Spro_4617 -80 4.1 ATATTTGATACCTATCGCGGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4106 -81 4 TTTTATGATTGCTATCGCGGTT
Edwardsiella tarda EIB202 ETAE_3277 -82 3.9 TTTTTTGATGACTATCTCGGTT
Proteus mirabilis HI4320 PMI3015 -131 4 ATTTGTGCATTAGTTCTCGTTA
Photorhabdus luminescens subsp. laumondii TTO1 plu0100 -86 3.8 TTTTTTGATAACTATCGCTGTT
Position: -186
Score: 3.7
Sequence: TATTGTGACTGCGTTAGCTTTG
Locus tag: YPZ3_0122
YPZ3_0122 -186 3.7 TATTGTGACTGCGTTAGCTTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: igaA
Ortholog function: IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system
Escherichia coli str. K-12 substr. MG1655 b3398 -288 3.6 TTGTGCGATATCGGACACGCTT
-123 3.8 TACTGTGATGTGCTTAATGATG
Salmonella typhimurium LT2 STM3495 -238 3.6 TTATGTAACGTAATAAAAATTA
Citrobacter koseri ATCC BAA-895 CKO_04821 -290 3.9 TTGTGCGATATACAGCACGGTT
-238 3.7 TTATGTAACGTAGTAAAAATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03769 -282 3.8 TTGTGCGATACGCAACACGCTT
Enterobacter sp. 638 Ent638_3811 -287 3.7 TTGTGCGATATGACGCACGGTT
Yersinia pestis KIM y3922 -186 3.7 TATTGTGACTGCGTTAGCTTTG
Position: -247
Score: 4.5
Sequence: CAATGTGATCAAGTTCTAATAT
Locus tag: YPZ3_0123
YPZ3_0123 -247 4.5 CAATGTGATCAAGTTCTAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nudE
Ortholog function: ADP compounds hydrolase NudE (EC 3.6.1.-)
Escherichia coli str. K-12 substr. MG1655 b3397 -53 3.7 AAGCGTGTCCGATATCGCACAA
Citrobacter koseri ATCC BAA-895 CKO_04820 -54 4.1 AACCGTGCTGTATATCGCACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03768 -54 4 AAGCGTGTTGCGTATCGCACAA
Enterobacter sp. 638 Ent638_3810 -55 3.6 AACCGTGCGTCATATCGCACAA
Yersinia pestis KIM y3923 -247 4.5 CAATGTGATCAAGTTCTAATAT
Serratia proteamaculans 568 Spro_4612 -135 4.4 CAATGTGATCAAGATCGGATTT
Edwardsiella tarda EIB202 ETAE_3268 -116 3.6 AAATATGAGCATCTGCGCACAA
Position: -75
Score: 3.7
Sequence: CAAATTGATTTACATCAAGAAA
Position: -4
Score: 3.4
Sequence: AAAAATGAGCAAAATAAAAATT
Locus tag: YPZ3_0140
YPZ3_0140 -75 3.7 CAAATTGATTTACATCAAGAAA
-4 3.4 AAAAATGAGCAAAATAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirB
Ortholog function: nitrite reductase (NAD(P)H) subunit
Escherichia coli str. K-12 substr. MG1655 b3365 -124 3.2 AAAATTTATACAAATCAGCAAT
-76 3.4 GAATTTGATTTACATCAATAAG
Salmonella typhimurium LT2 STM3474 -76 3.4 GAATTTGATTTACATCAATAAG
Citrobacter koseri ATCC BAA-895 CKO_04789 -76 3.4 GAATTTGATTTACATCAATAAG
Enterobacter sp. 638 Ent638_3793 -76 3.3 GTATTTGATTTGCATCAATAAG
Yersinia pestis KIM y3945 -75 3.7 CAAATTGATTTACATCAAGAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4079 -186 4.2 AAGCGTGCTATAGATCTCACTT
Proteus mirabilis HI4320 PMI1479 -129 3.5 TTTTGTGCACTTTATTAACAAT
Position: -277
Score: 4.5
Sequence: AAATGAGATATTTCTCGCAAAA
Locus tag: YPZ3_0146
YPZ3_0146 -277 4.5 AAATGAGATATTTCTCGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppiA
Ortholog function: Peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8)
Yersinia pestis KIM y3951 -247 4.5 AAATGAGATATTTCTCGCAAAA
-81 3.6 AAATGTGCATTCTGTTACGTAA
Serratia proteamaculans 568 Spro_4589 -181 3.9 ATGCGTGATGCAGTTGGCAAAA
Position: -309
Score: 3
Sequence: AATTTAGACTACCCTTTCATTT
Locus tag: YPZ3_0151
YPZ3_0151 -309 3 AATTTAGACTACCCTTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: crp
Ortholog function: cyclic AMP receptor protein
Escherichia coli str. K-12 substr. MG1655 b3357 -154 3.3 TACATTGATGTACTGCATGTAT
-136 3.3 GTATGCAAAGGACGTCACATTA
Salmonella typhimurium LT2 STM3466 -159 3.1 TACATTGACGTACTGCATGTAT
Citrobacter koseri ATCC BAA-895 CKO_04777 -160 3.1 TACATTGACGTACTGCATGTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03743 -158 3.3 TACATTGATGTACTGCATGTAT
Enterobacter sp. 638 Ent638_3784 -128 2.9 AAACATTACAGGCTGCAAACAT
Yersinia pestis KIM y3956 -309 3 AATTTAGACTACCCTTTCATTT
Serratia proteamaculans 568 Spro_4580 -121 3.5 ATTTATGACACGCCTCAAAACC
Proteus mirabilis HI4320 PMI2820 -135 3.3 TATTATAATCTATTCCTTATTA
Position: -97
Score: 4.2
Sequence: ATACGTGATCTGCCGCCCAAAA
Locus tag: YPZ3_0218
YPZ3_0218 -97 4.2 ATACGTGATCTGCCGCCCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: acs
Ortholog function: acetyl-coenzyme A synthetase
Escherichia coli str. K-12 substr. MG1655 b4069 -100 4.1 TTGCGTGATCTGTCGCCCAAAT
Salmonella typhimurium LT2 STM4275 -100 4.1 TTGCGTGATCTGTCGCCCAAAT
Citrobacter koseri ATCC BAA-895 CKO_03816 -101 4.3 TTGCGTGATCTGCCGCGCAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04478 -101 3.9 TTGCGTGATCTGCCCCCCAATT
Enterobacter sp. 638 Ent638_0276 -101 4.1 TTGCGTGATCTGTCGCCCAAAT
Yersinia pestis KIM y0510 -97 4.2 ATACGTGATCTGCCGCCCAAAA
Serratia proteamaculans 568 Spro_0297 -97 4 TTGCGTGATCTGCCGCCCAAAA
Proteus mirabilis HI4320 PMI3037 -97 4.5 TTTCGTGATCTTATGCGCAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0074 -98 4.2 TTGCGTGATCTTCCGCGCAAAA
Position: -234
Score: 4.2
Sequence: AACTGTGAGCTGTTTCACTTTC
Locus tag: YPZ3_0285
YPZ3_0285 -234 4.2 AACTGTGAGCTGTTTCACTTTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaB
Ortholog function: rhamnulokinase
Escherichia coli str. K-12 substr. MG1655 b3904 -162 3.8 AAATGCGGTGAGCATCACATCA
-127 4.4 AATTGTGAACATCATCACGTTC
Salmonella typhimurium LT2 STM4047 -247 3.9 AAGGGTTATCGGCCTCACCTTA
-127 4.1 AACTGTGAACGCTATCACGTTC
Citrobacter koseri ATCC BAA-895 CKO_03100 -182 4.5 AATTGTGAACGCTATCACGTTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04213 -128 4.2 AACTGTGATGTCCCTCACGGTC
Enterobacter sp. 638 Ent638_4067 -129 4.2 AACTGTGAACTCCCTCACGTTC
Yersinia pestis KIM y0587 -234 4.2 AACTGTGAGCTGTTTCACTTTC
Position: -214
Score: 3.9
Sequence: GAAAGTGAAACAGCTCACAGTT
Locus tag: YPZ3_0286
YPZ3_0286 -214 3.9 GAAAGTGAAACAGCTCACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaS
Ortholog function: L-rhamnose operon regulatory protein RhaS
Escherichia coli str. K-12 substr. MG1655 b3905 -182 4.5 GAACGTGATGATGTTCACAATT
-147 4.5 TGATGTGATGCTCACCGCATTT
Salmonella typhimurium LT2 STM4048 -182 4.3 GAACGTGATAGCGTTCACAGTT
-147 4 CGGTGTGATGTCGTCCGCATTT
-62 3.8 TAAGGTGAGGCCGATAACCCTT
Citrobacter koseri ATCC BAA-895 CKO_03099 -194 4.5 GAACGTGATAGCGTTCACAATT
-34 4.3 ATTTCTGACATGTTTCTCATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04214 -204 3.8 GACCGTGAGGGACATCACAGTT
Enterobacter sp. 638 Ent638_4066 -194 4.2 GAACGTGAGGGAGTTCACAGTT
Yersinia pestis KIM y0590 -214 3.9 GAAAGTGAAACAGCTCACAGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0441 -144 3.9 CGGTGTGATCCTTGCCACACTT
Position: -86
Score: 3.7
Sequence: AAAATTGAAGGGTATCACGGTA
Locus tag: YPZ3_0287
YPZ3_0287 -86 3.7 AAAATTGAAGGGTATCACGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaR
Ortholog function: L-rhamnose operon transcriptional activator RhaR
Escherichia coli str. K-12 substr. MG1655 b3906 -182 4.5 GAACGTGATGATGTTCACAATT
-147 4.5 TGATGTGATGCTCACCGCATTT
Salmonella typhimurium LT2 STM4049 -182 4.3 GAACGTGATAGCGTTCACAGTT
-147 4 CGGTGTGATGTCGTCCGCATTT
-62 3.8 TAAGGTGAGGCCGATAACCCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04215 -204 3.8 GACCGTGAGGGACATCACAGTT
Enterobacter sp. 638 Ent638_4065 -194 4.2 GAACGTGAGGGAGTTCACAGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0442 -144 3.9 CGGTGTGATCCTTGCCACACTT
Position: -171
Score: 4.3
Sequence: TTTTGTGATCATCATCATTCTT
Locus tag: YPZ3_0288
YPZ3_0288 -171 4.3 TTTTGTGATCATCATCATTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaT
Ortholog function: L-rhamnose-proton symport
Escherichia coli str. K-12 substr. MG1655 b3907 -145 4.1 AGATGTGAAGCAAATCACCCAC
Salmonella typhimurium LT2 STM4050 -293 3.6 TTATGTGACCTCACGCAGCGTT
-149 3.9 AAACGTGAAGTTAATCACTTCA
Citrobacter koseri ATCC BAA-895 CKO_03094 -148 4.1 ATATGTGAGCCAAATCACCCGT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04216 -149 4.7 TTTTGTGATGTAGAACAACTAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0450 -193 3.6 TTTTGTGATCCTGCCTATATCA
Position: -224
Score: 4.6
Sequence: AAGTGTGAGAGCAATCACAGAT
Locus tag: YPZ3_0350
YPZ3_0350 -224 4.6 AAGTGTGAGAGCAATCACAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aspA
Ortholog function: aspartate ammonia-lyase
Escherichia coli str. K-12 substr. MG1655 b4139 -206 4.5 AGCGGTGATCTATTTCACAAAT
-156 4.2 TAAAGTGATCCAGATTACGGTA
Salmonella typhimurium LT2 STM4326 -209 4.2 AGCGGTGACCTATTTCACAAAA
-159 4.2 TTAAGTGATCCAGATTACGGTA
Citrobacter koseri ATCC BAA-895 CKO_03696 -54 4.2 AGCGGTGACCTATTTCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04529 -204 3.9 AGCGGTGACCCATTTCACAGAT
-154 3.8 ATAAGTGATCAAGCTTACTGAT
Enterobacter sp. 638 Ent638_0326 -205 4.1 AGCGGTGATTCATTTCACAGAT
Erwinia amylovora ATCC 49946 EAM_0416 -228 4.2 CAATGTGACCTGGAACAGATAT
Yersinia pestis KIM y0606 -224 4.6 AAGTGTGAGAGCAATCACAGAT
Serratia proteamaculans 568 Spro_0406 -205 4.7 AAACGTGAATGAGATCACAGAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0621 -272 4 ACTCGTGACTACAATCACAGTT
Edwardsiella tarda EIB202 ETAE_0311 -197 4.4 ATCTGTGAGTATTATCACAGAT
Proteus mirabilis HI4320 PMI2546 -206 4.1 ATCCATGAGATAGATCACAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4137 -274 3.8 AGATATAATTGGGGTCACAGTT
-211 5.6 AATTGTGATAAATATCACATAT
Position: -245
Score: 4.8
Sequence: ATCTGTGATTGCTCTCACACTT
Locus tag: YPZ3_0351
YPZ3_0351 -245 4.8 ATCTGTGATTGCTCTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fxsA
Ortholog function: suppressor of F plamsid exlusion of phage T7
Escherichia coli str. K-12 substr. MG1655 b4140 -202 4.1 TACCGTAATCTGGATCACTTTA
-152 4.3 ATTTGTGAAATAGATCACCGCT
Salmonella typhimurium LT2 STM4327 -203 4.1 TACCGTAATCTGGATCACTTAA
-153 4.1 TTTTGTGAAATAGGTCACCGCT
Citrobacter koseri ATCC BAA-895 CKO_03695 -156 4.1 TTTTGTGAAATAGGTCACCGCT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04530 -140 3.7 ATCTGTGAAATGGGTCACCGCT
Enterobacter sp. 638 Ent638_0327 -151 3.8 ATCTGTGAAATGAATCACCGCT
Erwinia amylovora ATCC 49946 EAM_0417 -161 3.9 ATATCTGTTCCAGGTCACATTG
Yersinia pestis KIM y0607 -245 4.8 ATCTGTGATTGCTCTCACACTT
Serratia proteamaculans 568 Spro_0407 -117 4.9 TTCTGTGATCTCATTCACGTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0623 -245 3.7 AACTGTGATTGTAGTCACGAGT
-185 3.6 AAATGTGCAAAGGCGCACCCAT
Edwardsiella tarda EIB202 ETAE_0312 -189 4.6 ATCTGTGATAATACTCACAGAT
Proteus mirabilis HI4320 PMI2545 -188 4.7 TTTTGTGATCTATCTCATGGAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4136 -188 5.6 ATATGTGATATTTATCACAATT
Position: -258
Score: 4.5
Sequence: AATTGGGATATTGCTCACAAAG
Locus tag: YPZ3_0397
YPZ3_0397 -258 4.5 AATTGGGATATTGCTCACAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: frwC
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b3949 -202 4 ATTTGCGACGCGTCTCACAAGA
-147 4.3 AGTTATGAGGCGGATCGCATTT
-57 3.9 TATTGTTTCCTCCATCAAAAAT
Salmonella typhimurium LT2 STM4112 -221 4.1 AAATGTAATGTAGCGCAAAAAG
-202 4 AAGTGCGAGTTGTCTCACAACT
-147 4.3 AGTTATGAAGCGGATCGCATTT
Citrobacter koseri ATCC BAA-895 CKO_03045 -202 3.9 AATTGCGAGACACTTCACAAGT
-147 4.3 AGTTATGAGGCGGATCGCATTT
Yersinia pestis KIM y3777 -258 4.5 AATTGGGATATTGCTCACAAAG
Position: -151
Score: 5.5
Sequence: TAATGTGATTATGATCACATTT
Locus tag: YPZ3_0422
YPZ3_0422 -151 5.5 TAATGTGATTATGATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nupC2
Ortholog function: Na+ dependent nucleoside transporter
Yersinia pestis KIM y3744 -154 3.8 CTTTGTCAATAACCTCACATAT
-115 5.5 TAATGTGATTATGATCACATTT
Serratia proteamaculans 568 Spro_0659 -181 3.9 AACCGTGACGCATGTCACGTAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0473 -182 4.9 AATTGTGACGAAGATCACTTTT
Edwardsiella tarda EIB202 ETAE_0482 -232 4.9 TGATGTGATATGCATCACTTTT
Proteus mirabilis HI4320 PMI2418 -180 5.2 TAGTGTGATTTAGATCTCATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu0519 -178 5.5 TTGTGTGATTCACATCACATTT
Position: -184
Score: 3.7
Sequence: TGCGGTGAGATGGATCTCAATT
Locus tag: YPZ3_0423
YPZ3_0423 -184 3.7 TGCGGTGAGATGGATCTCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoC
Ortholog function: 2-deoxyribose-5-phosphate aldolase
Escherichia coli str. K-12 substr. MG1655 b4381 -149 4.6 TTATTTGAACCAGATCGCATTA
-96 4.5 AATTGTGATGTGTATCGAAGTG
Salmonella typhimurium LT2 STM4567 -133 4.9 TAATTTGATTCAGATCTCATTA
-80 4.2 AACTGTGATGTATATCGAAGTG
Citrobacter koseri ATCC BAA-895 CKO_03410 -134 4.2 TTATTTGAAGTGGATCTCGTTA
-81 4.2 AACTGTGATGTATATCGAAGTG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04837 -158 5.2 ATTTGTGATTTTAATCACGTTA
-105 3.7 AACTGTGATGAATGTCGAAGTG
Enterobacter sp. 638 Ent638_0541 -151 4.6 AAATTTGAAGTGGATCTCATTA
-98 3.7 AACTGTGATGAATGTCGAAGTG
Erwinia amylovora ATCC 49946 EAM_0615 -233 4.6 TGATGTGATAATTCTAACATTA
Yersinia pestis KIM y3743 -169 3.7 TGCGGTGAGATGGATCTCAATT
Serratia proteamaculans 568 Spro_0660 -262 4.6 ATTTGTGAACGATATCGCGTTA
-240 5.5 TTTTGTGATGGTCTTCACATAT
-188 3.8 TAGTGTGACTGTGAACGCGAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0727 -282 4.4 AAGTGTGAATGAATGCACAAAA
Proteus mirabilis HI4320 PMI2416 -267 4.4 ATATGTGAGTTACTTCGCAACT
-135 5.6 TTTTGTGATTCTGATCACAATT
-83 4.5 TATTGTGACAGAAAGCACATCT
Position: -147
Score: 4.1
Sequence: AAATGTGATATGCGTTATCAAT
Locus tag: YPZ3_0457
YPZ3_0457 -147 4.1 AAATGTGATATGCGTTATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nhaA
Ortholog function: Na+/H+ antiporter NhaA type
Salmonella typhimurium LT2 STM0039 -97 3.7 AAACGAGCTATTCATCATATAT
Yersinia pestis KIM y3704 -147 4.1 AAATGTGATATGCGTTATCAAT
Serratia proteamaculans 568 Spro_0694 -120 4.7 AAGTGTGATATAAATCGCTTAT
Proteus mirabilis HI4320 PMI0011 -110 3.9 ATAAGCGATTGAGATCGAAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0587 -122 4.4 TATTGAGATGTAGATCATCAAT
Position: -229
Score: 4.1
Sequence: AAAGTTGAGTGACATCACAAAA
Locus tag: YPZ3_0555
YPZ3_0555 -229 4.1 AAAGTTGAGTGACATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxaC
Ortholog function: Uronate isomerase (EC 5.3.1.12)
Yersinia pestis KIM y3600 -229 4.1 AAAGTTGAGTGACATCACAAAA
-109 3.6 TTTTGCGATCAATATCTATAAA
Serratia proteamaculans 568 Spro_4321 -231 4.1 AAAGTTGAGTGATATCACAAAA
Position: -158
Score: 4
Sequence: ATTCATGACGGCTATCACAATC
Locus tag: YPZ3_0565
YPZ3_0565 -158 4 ATTCATGACGGCTATCACAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadH
Ortholog function: 2,4-dienoyl-CoA reductase [NADPH] (2,4-dienoyl coenzyme A reductase)
Escherichia coli str. K-12 substr. MG1655 b3081 -112 3.9 CTTTTTGAATCCCATCACAAAC
Salmonella typhimurium LT2 STM3219 -113 4.3 TTTTTTGAATCCCATCACAATC
Citrobacter koseri ATCC BAA-895 CKO_04487 -113 4.3 TTTTTTGAATCCCATCACAATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03510 -111 3.9 TTCTTTGAATCCCATCACAATC
Enterobacter sp. 638 Ent638_3539 -111 3.9 ATCTTTGAATCCCATCACATTC
Erwinia amylovora ATCC 49946 EAM_0507 -169 3.8 AACCGTGACTGAGATCGCTAAA
Yersinia pestis KIM y3589 -131 4 ATTCATGACGGCTATCACAATC
Serratia proteamaculans 568 Spro_4309 -126 4.2 ATTCATGACATCTATCACATTC
Proteus mirabilis HI4320 PMI3702 -213 3.8 TATTATTATATGATTAAAAAAT
-103 3.8 TTCCATGATTAAGATCACAACT
Photorhabdus luminescens subsp. laumondii TTO1 plu3990 -161 4.3 TTTCATGACCTTCATCACATTC
Position: -216
Score: 3.7
Sequence: AATTGTGCCCTTTTTCAGGGAA
Locus tag: YPZ3_0802
YPZ3_0802 -216 3.7 AATTGTGCCCTTTTTCAGGGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: epd
Ortholog function: D-erythrose 4-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655 b2927 -213 4.7 AAGTGTGATGTGAGTCAGATAA
Salmonella typhimurium LT2 STM3070 -213 5 AAATGTGATGCAGGTCAGATAA
Citrobacter koseri ATCC BAA-895 CKO_04297 -213 4.8 AAGTGTGATGCAGGTCAGATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03356 -213 4.8 AAATGTGATGTGAGTCATATAG
Enterobacter sp. 638 Ent638_3340 -215 4.5 AAATGTGACGCAAGTCATATAG
Erwinia amylovora ATCC 49946 EAM_2813 -208 4.1 TTTTGTGACGCAGATCGAAAGT
Yersinia pestis KIM y3309 -216 3.7 AATTGTGCCCTTTTTCAGGGAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3913 -194 4.1 TTTTATGACGCAGGTCACTCTT
Edwardsiella tarda EIB202 ETAE_2958 -233 4.9 AATTGTGATGCAATGCACGTTT
Proteus mirabilis HI4320 PMI0241 -253 4.4 AAATGTTAACAAGAGCACATTT
Position: -249
Score: 3.7
Sequence: TAATTCTAGCGAGATCACAGTT
Locus tag: YPZ3_0808
YPZ3_0808 -249 3.7 TAATTCTAGCGAGATCACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: iciA
Ortholog function: chromosome replication initiation inhibitor protein
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03350 -107 3.8 CCCTGCGATGCAGATCACACAA
Enterobacter sp. 638 Ent638_3334 -126 3.9 CCCTGTGACCGGTGTCACATTA
-48 3.7 ATTTGTGTCATAGTGCAGAATA
Yersinia pestis KIM y3303 -249 3.7 TAATTCTAGCGAGATCACAGTT
Edwardsiella tarda EIB202 ETAE_2951 -48 3.8 TAACGTTTTATACATAACAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3610 -41 3.6 CATAGTGATATTCAGAAAAATA
Position: -114
Score: 4.2
Sequence: AACTGTGATCTCGCTAGAATTA
Locus tag: YPZ3_0809
YPZ3_0809 -114 4.2 AACTGTGATCTCGCTAGAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpiA
Ortholog function: Ribose 5-phosphate isomerase A (EC 5.3.1.6)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03349 -82 3.9 TTGTGTGATCTGCATCGCAGGG
Enterobacter sp. 638 Ent638_3333 -47 3.8 TAATGTGACACCGGTCACAGGG
Yersinia pestis KIM y3302 -114 4.2 AACTGTGATCTCGCTAGAATTA
Edwardsiella tarda EIB202 ETAE_2950 -276 4 TTTTGTTATGTATAAAACGTTA
Proteus mirabilis HI4320 PMI2032 -96 3.8 TAAAATGTTGTGTCTCAAATTT
Position: -228
Score: 4.8
Sequence: TTTGGTGATATATATCACATTC
Locus tag: YPZ3_0810
YPZ3_0810 -228 4.8 TTTGGTGATATATATCACATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: serA
Ortholog function: D-3-phosphoglycerate dehydrogenase
Escherichia coli str. K-12 substr. MG1655 b2913 -210 4.1 TTTGGTGACATGTGTCACGCTT
Salmonella typhimurium LT2 STM3062 -217 4.5 TTTGGTGACATGTATCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03348 -214 4.6 TTTGGTGACTTCTGTCACATTT
Enterobacter sp. 638 Ent638_3332 -215 4.1 TTCGGTGACTTGTATCACGTTT
Yersinia pestis KIM y3301 -126 4.8 TTTGGTGATATATATCACATTC
Serratia proteamaculans 568 Spro_3923 -215 4.4 TTTGGTGACATATGTCACATTG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3905 -214 3.9 TTTGGTACTTAATATCACATTT
Proteus mirabilis HI4320 PMI2031 -210 4 TTCAGTGATATATATCACACGA
Photorhabdus luminescens subsp. laumondii TTO1 plu3605 -207 4.4 TTTAGTGATATATTTCATATCT
-178 4.2 TTATTTGATCTAAATCCTAATT
-105 4.4 TTATGTGATGGGAATAGCAATC
Position: -299
Score: 5.4
Sequence: TAATGTGACTTTGTTCACATTA
Position: -122
Score: 3.8
Sequence: TTCTTTGAAAGAATTCTCATAA
Position: -21
Score: 4.9
Sequence: TAATTTGAGGGAGATCACAAAA
Locus tag: YPZ3_0867
YPZ3_0867 -299 5.4 TAATGTGACTTTGTTCACATTA
-122 3.8 TTCTTTGAAAGAATTCTCATAA
-21 4.9 TAATTTGAGGGAGATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: CKO_02295
Ortholog function: hypothetical protein
Citrobacter koseri ATCC BAA-895 CKO_02295 -218 3.9 TTTTGTTATCTCATTGAAAATT
-104 4.1 TTTTGTGCAAGTTTTCTCATTA
Citrobacter koseri ATCC BAA-895 CKO_02295 -218 3.9 TTTTGTTATCTCATTGAAAATT
-104 4.1 TTTTGTGCAAGTTTTCTCATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00854 -103 3.9 TGAAATGAGCGAGATCGCATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00854 -103 3.9 TGAAATGAGCGAGATCGCATAT
Enterobacter sp. 638 Ent638_1314 -122 4.1 TTTTGTGCAAGCTTTCTCATAA
Enterobacter sp. 638 Ent638_1314 -122 4.1 TTTTGTGCAAGCTTTCTCATAA
Yersinia pestis KIM y3231 -299 5.4 TAATGTGACTTTGTTCACATTA
-122 3.8 TTCTTTGAAAGAATTCTCATAA
-21 4.9 TAATTTGAGGGAGATCACAAAA
Yersinia pestis KIM y3231 -299 5.4 TAATGTGACTTTGTTCACATTA
-122 3.8 TTCTTTGAAAGAATTCTCATAA
-21 4.9 TAATTTGAGGGAGATCACAAAA
Serratia proteamaculans 568 Spro_3600 -130 3.7 AAACGTGGTTTTTTGCAAAAAT
-21 4.6 AAATTTGAAGGAGATCACAGAA
Serratia proteamaculans 568 Spro_3600 -130 3.7 AAACGTGGTTTTTTGCAAAAAT
-21 4.6 AAATTTGAAGGAGATCACAGAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1966 -21 4.8 AAAAGTGAACGGGATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1966 -21 4.8 AAAAGTGAACGGGATCACAAAA
Position: -319
Score: 3.9
Sequence: ATTGGTGACTGACATCAAGATA
Position: -163
Score: 3.7
Sequence: TTATTTGTCTATGCTCACAGAA
Locus tag: YPZ3_1033
YPZ3_1033 -319 3.9 ATTGGTGACTGACATCAAGATA
-163 3.7 TTATTTGTCTATGCTCACAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: galE2
Ortholog function: UDP-galactose-4-epimerase
Escherichia coli str. K-12 substr. MG1655 b0759 -78 3.8 TAATTTATTCCATGTCACACTT
Salmonella typhimurium LT2 STM0776 -78 3.7 TAATTTATTACATGTCACACTT
Citrobacter koseri ATCC BAA-895 CKO_02376 -36 3.7 TAATATATTCCATGTCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00773 -78 3.7 TAACTTGTGCTATGTCACACTT
-44 4.1 ATATGCTATCTTCCTCACAAAC
Yersinia pestis KIM y3043 -163 3.7 TTATTTGTCTATGCTCACAGAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1389 -72 3.7 ATTCTCGCTGTAGATCACCTTT
Edwardsiella tarda EIB202 ETAE_2564 -195 3.7 TAGTGTAAGCGATACCACAAAC
Position: -82
Score: 3.9
Sequence: ATTTGTGATAACAGTCATCTCA
Locus tag: YPZ3_1135
YPZ3_1135 -82 3.9 ATTTGTGATAACAGTCATCTCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygbK
Ortholog function: hypothetical protein
Yersinia pestis KIM y2952 -73 3.9 ATTTGTGATAACAGTCATCTCA
Photorhabdus luminescens subsp. laumondii TTO1 plu2508 -147 3.8 ATAAATAATATAAATCAAATAA
-90 3.7 GAATGTGATAACCATCGTGTAT
Position: -238
Score: 4.4
Sequence: AAATGGGATCTGAATCCCAAAT
Locus tag: YPZ3_1162
YPZ3_1162 -238 4.4 AAATGGGATCTGAATCCCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yejG
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b2181 -158 3.7 AAACGTGACCACGCCCGCAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02614 -204 3.8 AAAGTTGTTTTGGATCACAGAA
Erwinia amylovora ATCC 49946 EAM_2233 -177 3.6 AAATGAGCATTACTTCTCAAAA
Yersinia pestis KIM y2914 -238 4.4 AAATGGGATCTGAATCCCAAAT
Serratia proteamaculans 568 Spro_3250 -214 4.2 AAATGCGAGCTGAGTCGCAAAA
-121 4.1 GCTTGTGATGTTTTTTACATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2740 -178 4 ATTCGTGATCAGTTTGGCATTA
-101 3.8 TGTTGTTTTTTTGTTCACGAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2865 -185 4.1 AAATGAGAGATTGATCTCACTT
-183 3.6 ATGAGAGATTGATCTCACTTTT
-141 3.8 TAATGTAATACTATAAACACAA
Position: -128
Score: 3.7
Sequence: GAATGTGCGTTCATGCACATTT
Locus tag: YPZ3_1168
YPZ3_1168 -128 3.7 GAATGTGCGTTCATGCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: spr
Ortholog function: predicted peptidase, outer membrane lipoprotein
Escherichia coli str. K-12 substr. MG1655 b2175 -130 4.1 TTTTGTGCGTTAGTCCACAGAT
Salmonella typhimurium LT2 STM2214 -128 3.7 ATTTGTGCGTTCCGCCACAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02608 -292 3.6 TAGGGTAATCTCGTTCTCGTTT
-234 4.2 AATTGTGCGTGACTGCACAAAT
Enterobacter sp. 638 Ent638_2771 -250 3.6 AATCGCTTTGTCTATCACAATT
Yersinia pestis KIM y2908 -128 3.7 GAATGTGCGTTCATGCACATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2735 -159 3.9 TAATGTGCATTCTGGCACACTT
Edwardsiella tarda EIB202 ETAE_2298 -131 4.4 AAGTGTGTTCTGCTGCACAATT
Proteus mirabilis HI4320 PMI0831 -129 4.2 TTACGTGCTTTAGAGCACGTTT
Position: -327
Score: 4.2
Sequence: ATTCGTGAAGTGGATCAACCAA
Locus tag: YPZ3_1173
YPZ3_1173 -327 4.2 ATTCGTGAAGTGGATCAACCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxuA
Ortholog function: Mannonate dehydratase (EC 4.2.1.8)
Escherichia coli str. K-12 substr. MG1655 b4322 -271 3.8 TGTTGCGATGAATGTCACATCC
-186 4.5 TCTTGTGATGTGGTTAACCAAT
Salmonella typhimurium LT2 STM3135 -205 4.3 AAAATTGACACAGATCAAATAA
-155 4.6 ATTTGTGATTTGGTTAGCCAAT
Citrobacter koseri ATCC BAA-895 CKO_00609 -115 3.9 GATTGTGAGCTGGATCAATCAA
Enterobacter sp. 638 Ent638_2767 -116 3.9 TTCTGTGAGTTGGATCAATCAA
Serratia proteamaculans 568 Spro_3238 -167 3.9 AACCGTGAAGTGGATCAACCAA
-48 4.1 AATCTTGATCACCACCACAATA
Edwardsiella tarda EIB202 ETAE_2289 -188 4.2 AATCGTGAGGCGGATCAACCAA
Position: -178
Score: 4.1
Sequence: AAATGTGCGGAATGTCAAAAAT
Locus tag: YPZ3_1186
YPZ3_1186 -178 4.1 AAATGTGCGGAATGTCAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fruB
Ortholog function: PTS system, fructose-specific IIA/FPr component
Escherichia coli str. K-12 substr. MG1655 b2169 -178 4.3 AATTGTGCAGCACATCAAACTT
Salmonella typhimurium LT2 STM2206 -177 4.6 AAATGTGCTTCACCTCAAAAAA
Citrobacter koseri ATCC BAA-895 CKO_00613 -50 4.1 AAGTGTGCTTTATCTCTAAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02600 -177 3.5 AAGTGTGCAGTACCTCTAAGTT
Enterobacter sp. 638 Ent638_2763 -178 4.3 AAATGTGCTGCACTTCTAAATT
Erwinia amylovora ATCC 49946 EAM_2223 -179 4.4 AAATGTGCTGGCTGTCAAAAAT
Yersinia pestis KIM y2887 -178 4.1 AAATGTGCGGAATGTCAAAAAT
Serratia proteamaculans 568 Spro_3230 -177 4 AAGTGTGCGTGAGGTCAAAAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2729 -180 4.1 AAATGTGCGTGATGTCAAAATT
Edwardsiella tarda EIB202 ETAE_2303 -199 4.1 AAATGTGCTGAAGGTCTAAAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu1992 -180 4.7 AAATGTGAGTAATCTCAAAAAA
Position: -197
Score: 4.2
Sequence: AAGTTTGATGTAGCTAACGCTA
Locus tag: YPZ3_1248
YPZ3_1248 -197 4.2 AAGTTTGATGTAGCTAACGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: clpS
Ortholog function: ATP-dependent Clp protease adaptor protein
Escherichia coli str. K-12 substr. MG1655 b0881 -164 4 AAATTTGAAGCAGTTAACGCTA
Salmonella typhimurium LT2 STM0944 -164 4 AAATTTGAAGCAGTTAACGCTA
-104 3.6 AGATGTTAGTTATCTATCAATT
Citrobacter koseri ATCC BAA-895 CKO_02199 -164 4 AAATTTGAAGCAGTTAACGCTA
-135 4.2 TAATGTGACAGATGTCGCGGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00914 -167 4 AAATTTGAAGCAGTTAACGCTA
-77 4.3 ATTTGTGATGAGCATAACCTCT
Enterobacter sp. 638 Ent638_1398 -161 3.9 ATTTTTGAAGCAGTTAACGCTA
-132 3.8 GAATGTGACAGATATCGCGGAT
Erwinia amylovora ATCC 49946 EAM_1320 -161 4 AAATTTGAAGCAGTTAACGCTA
-132 4.5 TTTTGTGATAGAGGTCGCTATT
Serratia proteamaculans 568 Spro_1673 -176 3.6 AAGTTTGAAGCAGGTAACGCTA
Edwardsiella tarda EIB202 ETAE_2208 -164 3.8 AAGTTTGAGGCAGTTAACGCAA
-144 3.6 AATTGTGCGGCAGTGCGCTTTT
Proteus mirabilis HI4320 PMI0689 -268 3.7 TGTCTTTATTTACTTAACATTA
-148 4.1 AACTTTGATGTAGCTAACGCTT
Photorhabdus luminescens subsp. laumondii TTO1 plu1593 -170 4.3 AAGTTTGATATAGATAACGATA
Position: -84
Score: 4
Sequence: CAATATGATCCATATCAATTTT
Locus tag: YPZ3_1264
YPZ3_1264 -84 4 CAATATGATCCATATCAATTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: focA
Ortholog function: formate transporter
Escherichia coli str. K-12 substr. MG1655 b0904 -156 3.6 TATTTTTATTTGGATAATCAAA
-78 3.8 AGATATGATCTATATCAATTTC
Salmonella typhimurium LT2 STM0974 -78 4.4 AGATATGATCTATATCAAATTC
Citrobacter koseri ATCC BAA-895 CKO_02167 -198 3.6 TATTTTTATTTGGATAATCAAA
-120 4.4 AGATATGATCTATATCAAATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00932 -121 3.8 AGATATGATCTATATCAATTTC
Enterobacter sp. 638 Ent638_1424 -78 3.8 AGATATGATCTATATCAATTTC
Yersinia pestis KIM y2789 -84 4 CAATATGATCCATATCAATTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2596 -79 4.5 CAATATGATCCACATCAAATTT
Proteus mirabilis HI4320 PMI0706 -188 4 TTTTTTGATAAAATTTAAAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1614 -88 4.7 AATTATGATCTATATCAAATTC
Position: -287
Score: 3.4
Sequence: ATTTGTCACCCCAGTCACTTAC
Position: -75
Score: 3.3
Sequence: TATAACGATGGCAATCTCAGTA
Locus tag: YPZ3_1269
YPZ3_1269 -287 3.4 ATTTGTCACCCCAGTCACTTAC
-75 3.3 TATAACGATGGCAATCTCAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: serC
Ortholog function: Phosphoserine aminotransferase (EC 2.6.1.52)
Escherichia coli str. K-12 substr. MG1655 b0907 -155 4.8 TTGTGTGATGCAAGCCACATTT
Salmonella typhimurium LT2 STM0977 -142 4.2 TTGTGTGACGCATGCCGCATTT
Citrobacter koseri ATCC BAA-895 CKO_02165 -171 4.6 TTGTGTGACGTAGCGCGCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00935 -145 3.7 TTGTGTGACGGCGGCCGCGTTT
Enterobacter sp. 638 Ent638_1427 -119 4.4 TTGTGTGACGGTGGACACATTT
Yersinia pestis KIM y2784 -39 3.3 TATAACGATGGCAATCTCAGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2594 -78 3.5 AAGTATGACGGGTATAAAAATG
Proteus mirabilis HI4320 PMI0711 -119 3.5 TATTTTTGTGTGCTACACATAA
Position: -97
Score: 4.3
Sequence: TAATGCGCGCCGAATCACATTT
Locus tag: YPZ3_1359
YPZ3_1359 -97 4.3 TAATGCGCGCCGAATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybiT
Ortholog function: ABC transporter ATP-binding protein
Escherichia coli str. K-12 substr. MG1655 b0820 -124 4.4 AGATGTGTACGAAATCACATTT
Salmonella typhimurium LT2 STM0838 -124 4 AGATGTGTACGAAATCACGTTT
Citrobacter koseri ATCC BAA-895 CKO_02298 -148 4.4 AGATGTGTACGAAATCACATTT
Enterobacter sp. 638 Ent638_1311 -125 4.4 AGATGTGTACGAAATCACATTT
Yersinia pestis KIM y2677 -295 3.9 TATCGTTATACCCGTCATACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3010 -41 4 TAATGCGCGCCAAATCACATTC
Edwardsiella tarda EIB202 ETAE_2518 -40 4.8 TAATGTGAACAAAATCACGTTA
Position: -58
Score: 3.4
Sequence: GGGTGTGACCCGCATCATGCTT
Locus tag: YPZ3_1372
YPZ3_1372 -58 3.4 GGGTGTGACCCGCATCATGCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: folE
Ortholog function: GTP cyclohydrolase I
Escherichia coli str. K-12 substr. MG1655 b2153 -101 3.8 TTATGTGCGCCGCCTCACGCAC
Salmonella typhimurium LT2 STM2193 -101 4 TTATGTGCGCTACCTCACGCAC
Citrobacter koseri ATCC BAA-895 CKO_00638 -98 3.8 TTATGTGCGCCGCCTCACGCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02591 -84 3.5 TTCTGTGCGCCACCTCACGCAC
Enterobacter sp. 638 Ent638_2753 -84 3.9 TTATGTGCGCCACCTCACGCAC
Serratia proteamaculans 568 Spro_1560 -121 4.3 AATCTTGACCGGGTTCACGTTA
Proteus mirabilis HI4320 PMI0639 -86 4.9 TAATGTGATTCAGCTCATCTAA
Position: -323
Score: 4.4
Sequence: ATCTGTGAGAAAATTCACAGTT
Locus tag: YPZ3_1374
YPZ3_1374 -323 4.4 ATCTGTGAGAAAATTCACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mglB
Ortholog function: Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3)
Escherichia coli str. K-12 substr. MG1655 b2150 -270 4.5 ATCTGTGAGTGATTTCACAGTA
Citrobacter koseri ATCC BAA-895 CKO_00641 -270 4.7 ATATGTGAGTAAATTCACAGTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02588 -239 4.8 ATTTGTGAGTAAATTCACAGTA
Enterobacter sp. 638 Ent638_2750 -271 4.4 ATCTGTGAGTAAATTCACAGTA
Yersinia pestis KIM y2662 -212 4.4 ATCTGTGAGAAAATTCACAGTT
Serratia proteamaculans 568 Spro_1563 -229 4.4 ATCTGTGAGAAAATTCACAGAT
Position: -75
Score: 5
Sequence: TAATGAGATATAAATCACAATT
Locus tag: YPZ3_1379
YPZ3_1379 -75 5 TAATGAGATATAAATCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cdd
Ortholog function: cytidine deaminase
Escherichia coli str. K-12 substr. MG1655 b2143 -128 4.3 ATTTGCGATGCGTCGCGCATTT
-78 5.1 TAATGAGATTCAGATCACATAT
Salmonella typhimurium LT2 STM2183 -128 4.2 ATTTGCGATACGTCGCGCATTT
-78 4.8 CAATGAGATTTAGATCACATAT
Citrobacter koseri ATCC BAA-895 CKO_00646 -128 4.3 ATTTGCGATGCGTCGCGCATTT
-78 4.8 CAATGAGATTTGGATCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02584 -78 4.4 GAATGAGATATTCATCACATAT
Enterobacter sp. 638 Ent638_2746 -127 4.2 ATTTGCGATGCGTCGCGCAATT
-77 4.9 TAATGAGAACTGGATCACATAT
Erwinia amylovora ATCC 49946 EAM_2202 -124 3.9 ACTTGCGATAAGTCTCTCATTT
-104 4.1 TTTGGTGATGCATTTCATTTAT
-74 4.7 TAGAGCGATTTAGATCACATAT
Yersinia pestis KIM y2657 -75 5 TAATGAGATATAAATCACAATT
Serratia proteamaculans 568 Spro_1568 -127 4.1 ACTTGCGATACATCTCGCAATT
-77 4.5 TAAAGAGATTTACATCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2830 -130 4.6 AATTGAGATACATCTCGCATTT
-79 4.5 TAAAGAGATTCCGATCACAATT
Edwardsiella tarda EIB202 ETAE_1162 -76 4.9 AAAAGTGATTATTATCACAAAT
Proteus mirabilis HI4320 PMI0643 -132 4.4 ATTTGAGATGTATCTCCCAATT
-82 5.1 AAATATGATTTTAATCACATAT
Photorhabdus luminescens subsp. laumondii TTO1 plu1547 -75 4.7 CTATATGATATTTATCACATTA
Position: -71
Score: 4.7
Sequence: TAGTGTGATGGGTAGCACAGAA
Locus tag: YPZ3_1381
YPZ3_1381 -71 4.7 TAGTGTGATGGGTAGCACAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yohJ
Ortholog function: LrgA family protein
Escherichia coli str. K-12 substr. MG1655 b2141 -68 4.9 TAATGTGATCGGTAGCACGTTT
Salmonella typhimurium LT2 STM2181 -68 4.6 TGATGTGATCGGTAGCACGTTT
Citrobacter koseri ATCC BAA-895 CKO_00648 -68 4.6 TGATGTGATCGGTAGCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02582 -68 5 TGATGTGATCGGTAGCACATTT
Enterobacter sp. 638 Ent638_2744 -68 4.7 TGATGTGATCCGTAGCACGTTT
Yersinia pestis KIM y2654 -32 4.7 TAGTGTGATGGGTAGCACAGAA
Serratia proteamaculans 568 Spro_1570 -62 4.3 ATTTGTGGCGGAGGTCACAGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2828 -69 4.5 ATTCGTGATCTGTGGCACGTAA
Edwardsiella tarda EIB202 ETAE_1164 -68 4.9 TGATGTGATCAGTAGCACATTT
Proteus mirabilis HI4320 PMI0645 -71 5.2 TATTGTGATCCATAGCACACTT
Position: -129
Score: 3.8
Sequence: AGTTGTGCTATCTATCGCACCA
Locus tag: YPZ3_1406
YPZ3_1406 -129 3.8 AGTTGTGCTATCTATCGCACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gnd
Ortholog function: hypothetical protein
Enterobacter sp. 638 Ent638_2642 -116 4 CAGTGTGACATAGATCAGCAAA
Yersinia pestis KIM y2629 -78 3.8 AGTTGTGCTATCTATCGCACCA
-76 3.6 TTGTGCTATCTATCGCACCAAT
Serratia proteamaculans 568 Spro_1608 -297 3.7 ATGCTTGAAGTGGCTCTCACTT
-72 4.2 ACATGTGTGCCACATCACAAAA
Proteus mirabilis HI4320 PMI0655 -71 4.7 CTATGTGATCAGGTTAACAAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu1560 -74 4.4 ACATGTGATCACATTAACAAAT
Position: -222
Score: 3.4
Sequence: TATTTTAACCCGCTGCGCGTTT
Locus tag: YPZ3_1433
YPZ3_1433 -222 3.4 TATTTTAACCCGCTGCGCGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argG
Ortholog function: Argininosuccinate synthase (EC 6.3.4.5)
Escherichia coli str. K-12 substr. MG1655 b3172 -253 4.6 TATAGTGATCCACGCCACATTT
Erwinia amylovora ATCC 49946 EAM_0139 -121 3.5 AATAGTGAATAAAAATACAATA
Serratia proteamaculans 568 Spro_4779 -167 4 TATTGTGAATAAAAATACAATA
Edwardsiella tarda EIB202 ETAE_3480 -160 3.4 AATTATGAATAAAAATACAATA
Proteus mirabilis HI4320 PMI3239 -57 3.6 TTTTTTGAATAAAAATACATTA
Photorhabdus luminescens subsp. laumondii TTO1 plu4742 -59 3.6 TTTTTTGAATAAAAATACATTA
Position: -64
Score: 4.3
Sequence: TATTGTGATCGCCATCACTTCC
Locus tag: YPZ3_1476
YPZ3_1476 -64 4.3 TATTGTGATCGCCATCACTTCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroH
Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase
Escherichia coli str. K-12 substr. MG1655 b1704 -106 4.3 AGGTGTGACACACCTCGCACTT
-64 4 TATCGTGATGCGCATCACTTCC
Salmonella typhimurium LT2 STM1347 -106 4.3 AGGTGTGACACGCCTCGCACTT
-64 4 TATCGTGATGCCCATCACTTCC
Citrobacter koseri ATCC BAA-895 CKO_01728 -115 4.3 AGGTGTGAAACGCCTCGCATTT
-64 4.3 TATTGTGATGCCCATCACTTCC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02162 -63 4 TATCGTGATGCGCATCACTTCC
Enterobacter sp. 638 Ent638_1743 -126 3.6 AGTTATGATCGCTTTCACTCTC
-62 3.6 TAAGGTGATGCCCATCACTTCC
Yersinia pestis KIM y1928 -64 4.3 TATTGTGATCGCCATCACTTCC
Serratia proteamaculans 568 Spro_2172 -135 3.9 TTTTGTGCTTTTTTTAGCGATT
-64 4.3 TATTGTGATCGCCATCACTTCC
Edwardsiella tarda EIB202 ETAE_1792 -63 4 TATCGTGATCCCCATCACTTCC
Proteus mirabilis HI4320 PMI1423 -55 3.9 TATTGTGATCTTAATCACTGGG
Photorhabdus luminescens subsp. laumondii TTO1 plu2630 -62 3.8 TATTGTAATTTCCATTATCTAT
Position: -160
Score: 3.6
Sequence: TTTTTTTATTTATAGCACGAAC
Locus tag: YPZ3_1556
YPZ3_1556 -160 3.6 TTTTTTTATTTATAGCACGAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydgD
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b1598 -93 4 TTATCTGATTTTACTCCCACTT
Salmonella typhimurium LT2 STM1484 -93 4 TTATCTGATTTTACTCCCACTT
Citrobacter koseri ATCC BAA-895 CKO_01604 -95 4 TTATCTGATTTTACTCCCACTT
Enterobacter sp. 638 Ent638_1914 -53 4.1 TATTTTAATAGGGTTCACTTTT
Yersinia pestis KIM y2013 -160 3.6 TTTTTTTATTTATAGCACGAAC
Position: -146
Score: 4.8
Sequence: TTATGTGCAGCAAATCACATAA
Locus tag: YPZ3_1590
YPZ3_1590 -146 4.8 TTATGTGCAGCAAATCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mlc
Ortholog function: ROK family transcriptional regulatory protein
Escherichia coli str. K-12 substr. MG1655 b1594 -108 4.1 AAATGTGCTGTTAATCACATGC
Salmonella typhimurium LT2 STM1488 -65 3.8 AGTATTGAAGTGTTTCACCATA
Citrobacter koseri ATCC BAA-895 CKO_01593 -107 3.6 AAaTGTGcagTAaATCACAcgg
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01574 -104 3.8 AAATGTGCGGTAAATCACAAGG
Enterobacter sp. 638 Ent638_1919 -107 3.8 AAATGTGCGGTAAATCACAAGG
Erwinia amylovora ATCC 49946 EAM_1710 -143 4.9 TTATGTGCTGTAAATCACATTC
Yersinia pestis KIM y2110 -146 4.8 TTATGTGCAGCAAATCACATAA
Serratia proteamaculans 568 Spro_2283 -111 4.8 ATTTGTGCAGCAAATCACATAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2258 -226 4.4 ATATGCGCGCTAAATCACATAA
Edwardsiella tarda EIB202 ETAE_1713 -113 4.8 ATTTGTGCACTTAATCACATAA
Proteus mirabilis HI4320 PMI1292 -126 4.7 ATATGTGCTTTCCATCACGATT
Photorhabdus luminescens subsp. laumondii TTO1 plu2226 -119 4.8 TTTCGTGCTGAATATCACATAT
Position: -283
Score: 4.3
Sequence: TTTTGTGATGTCAGTCAAAAGT
Locus tag: YPZ3_1603
YPZ3_1603 -283 4.3 TTTTGTGATGTCAGTCAAAAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araF
Ortholog function: L-arabinose-binding periplasmic protein
Escherichia coli str. K-12 substr. MG1655 b1901 -163 4.2 CGATGTGATATTGCTCTCCTAT
Citrobacter koseri ATCC BAA-895 CKO_01050 -164 4 CGGTGTGATGCCGCTCTCCTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02396 -161 4 CGATGTGATAATGCTCTCGTAT
-72 3.6 TGTTTTGATGACGATTAAATTG
Enterobacter sp. 638 Ent638_2476 -162 3.7 CGGTGTGATGGCGCTCTCTTAT
Erwinia amylovora ATCC 49946 EAM_1698 -251 4.3 TTATGTGATGGCCTTCATATGT
Yersinia pestis KIM y2096 -283 4.3 TTTTGTGATGTCAGTCAAAAGT
Serratia proteamaculans 568 Spro_2245 -251 3.8 TTTTGTGACGGCTGTCATAAGT
Position: -146
Score: 4.3
Sequence: ACTTTTGACTGACATCACAAAA
Locus tag: YPZ3_1604
YPZ3_1604 -146 4.3 ACTTTTGACTGACATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araB
Ortholog function: L-ribulokinase
Erwinia amylovora ATCC 49946 EAM_1697 -131 4.1 ACATATGAAGGCCATCACATAA
Yersinia pestis KIM y2095 -146 4.3 ACTTTTGACTGACATCACAAAA
Serratia proteamaculans 568 Spro_2244 -132 3.9 ACTTATGACAGCCGTCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2274 -133 3.9 ACCTTTGACCAGCTTCACAAAA
Position: -40
Score: 4.3
Sequence: TATTTTGATAAGAATAACGTTA
Locus tag: YPZ3_1624
YPZ3_1624 -40 4.3 TATTTTGATAAGAATAACGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fsaB
Ortholog function: fructose 6-phosphate aldolase 2
Yersinia pestis KIM y2074 -103 4.3 TATTTTGATAAGAATAACGTTA
Serratia proteamaculans 568 Spro_2640 -88 4.7 TGATTTGATTTCGATCAAATAT
Position: -163
Score: 4.1
Sequence: TTTTATGATCCAGATCAATTTC
Position: -81
Score: 3.9
Sequence: AGATGTGATCTCGATTAGATCA
Locus tag: YPZ3_1649
YPZ3_1649 -163 4.1 TTTTATGATCCAGATCAATTTC
-81 3.9 AGATGTGATCTCGATTAGATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W
Escherichia coli str. K-12 substr. MG1655 b1256 -166 4.9 AAAATTGATTTAAATCACATTA
-82 3.8 TAATGTGATCTATGTAGGATCA
Salmonella typhimurium LT2 STM1732 -82 4.2 AAATGTGATCTGTATTAGATCA
Citrobacter koseri ATCC BAA-895 CKO_01333 -82 3.9 TAATGTGATCTGTATTGGATCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01248 -101 3.9 CATTGCGATCGGTAGCAAAAAT
-45 4 TAGTGTGATCTAAAACAGATCA
Enterobacter sp. 638 Ent638_2283 -121 3.7 AAAATTAATCTGGATCAACAAA
Yersinia pestis KIM y2044 -69 3.9 AGATGTGATCTCGATTAGATCA
Serratia proteamaculans 568 Spro_2674 -135 3.8 TTTTTTGATTCAGATCAATCCT
Edwardsiella tarda EIB202 ETAE_1528 -161 3.9 CTGATTGATGTCTATCAAATTT
Proteus mirabilis HI4320 PMI1350 -168 4.6 AAATTTGATGTGGATCAATTAT
-85 3.8 AGTTGTGATCGGCATTAGATCA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -164 4.3 AACTTTGATTTGGATCAAGTTA
-39 3.8 TATTTTGATTGACTTTAAATCA
Position: -286
Score: 5.3
Sequence: TTTTGTGATTTAAATCACGAAA
Locus tag: YPZ3_1666
YPZ3_1666 -286 5.3 TTTTGTGATTTAAATCACGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Escherichia coli str. K-12 substr. MG1655 b1241 -241 5 AAATTTGATTTGGATCACGTAA
Salmonella typhimurium LT2 STM1749 -242 4.9 AATCTTGATTTAGATCACACAA
Citrobacter koseri ATCC BAA-895 CKO_01318 -242 4.9 AAATTTGATCTGGATCACGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02199 -237 4.7 ATACTTGATCTAAATCACGTAA
Enterobacter sp. 638 Ent638_2304 -253 4.1 TAAATTGATTCAGATCATGTTT
Erwinia amylovora ATCC 49946 EAM_1900 -223 3.9 ATTGATGATCTGCATCATCTTT
Yersinia pestis KIM y2023 -286 5.3 TTTTGTGATTTAAATCACGAAA
Serratia proteamaculans 568 Spro_2704 -278 5.1 TTTTATGATTTAAATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -315 4.5 AAGTTCGATGTTGATCACAAAA
Edwardsiella tarda EIB202 ETAE_1508 -265 5 TTTCGTGACCTTAATCACAAAA
Proteus mirabilis HI4320 PMI1486 -246 5.4 TATTGTGATGTAGATCACTTTA
-187 3.7 AAAGGAGATCTTTTTAAAATAT
Photorhabdus luminescens subsp. laumondii TTO1 plu2496 -237 3.7 TATTTTTATTAGATTAAAAATT
-138 4.6 TTATGTGATTAAGATCAATATA
Position: -298
Score: 4.9
Sequence: TATTGTGAGATTGCTCATATAA
Locus tag: YPZ3_1669
YPZ3_1669 -298 4.9 TATTGTGAGATTGCTCATATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tdk
Ortholog function: Thymidine kinase (EC 2.7.1.21)
Yersinia pestis KIM y2145 -208 4.9 TATTGTGAGATTGCTCATATAA
Serratia proteamaculans 568 Spro_2705 -203 4.3 AAATGTGATGTCAGACAGAAAT
Edwardsiella tarda EIB202 ETAE_1506 -206 4 AACTGTTAGGTCGATCACTTAT
Photorhabdus luminescens subsp. laumondii TTO1 plu2497 -157 4.1 TGGTGTGATGGTGGTCATGAAT
Position: -142
Score: 5.1
Sequence: ATTTGCGATTTTTATCACATTT
Locus tag: YPZ3_1686
YPZ3_1686 -142 5.1 ATTTGCGATTTTTATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: msrB
Ortholog function: methionine sulfoxide reductase B
Escherichia coli str. K-12 substr. MG1655 b1778 -137 5.2 AAATGTGATTTTCATCACGATT
Salmonella typhimurium LT2 STM1291 -107 4.7 TAATGTGACATCAGTCACGATT
Citrobacter koseri ATCC BAA-895 CKO_01799 -107 4.9 AAACGTGATTCCGATCACGATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01198 -135 5.1 AAACGTGATTTAAGTCACAATT
Enterobacter sp. 638 Ent638_1676 -137 5.2 ATATGTGAGAAAGATCACAATT
Erwinia amylovora ATCC 49946 EAM_1930 -137 5.2 AATGGTGATCTGCATCACAATT
Yersinia pestis KIM y2164 -85 5.1 ATTTGCGATTTTTATCACATTT
Serratia proteamaculans 568 Spro_2727 -143 5.7 ATATGTGATCGGTATCACATAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2343 -135 5.6 TTATGTGATACACATCACAATT
Edwardsiella tarda EIB202 ETAE_1484 -91 4.9 GTTTGTGATGCTCATCACAAAA
Proteus mirabilis HI4320 PMI1503 -137 5.3 TTATGTGAAATGTATCACATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu2557 -267 4.6 ATATGCGAGTCACATCACAATA
Position: -227
Score: 5.1
Sequence: AAATGTGATAAAAATCGCAAAT
Locus tag: YPZ3_1687
YPZ3_1687 -227 5.1 AAATGTGATAAAAATCGCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gapA
Ortholog function: glyceraldehyde-3-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655 b1779 -226 5.3 AATCGTGATGAAAATCACATTT
Salmonella typhimurium LT2 STM1290 -226 4.8 AATCGTGACTGATGTCACATTA
Citrobacter koseri ATCC BAA-895 CKO_01800 -226 5 AATCGTGATCGGAATCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01197 -225 5.2 AATTGTGACTTAAATCACGTTT
Enterobacter sp. 638 Ent638_1675 -225 5.7 AATTGTGATCTTTCTCACATAT
Erwinia amylovora ATCC 49946 EAM_1931 -215 5.4 AATTGTGATGCAGATCACCATT
Yersinia pestis KIM y2165 -218 5.1 AAATGTGATAAAAATCGCAAAT
Serratia proteamaculans 568 Spro_2728 -227 5.6 ATATGTGATACCGATCACATAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2344 -235 5.8 AATTGTGATGTGTATCACATAA
Edwardsiella tarda EIB202 ETAE_1483 -227 5.1 TTTTGTGATGAGCATCACAAAC
Proteus mirabilis HI4320 PMI1504 -226 5.6 AAATGTGATACATTTCACATAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2558 -224 5.4 TATTGTGATGTGACTCGCATAT
Position: -112
Score: 4
Sequence: AATTGAGAGACAAGTCACAATC
Locus tag: YPZ3_1696
YPZ3_1696 -112 4 AATTGAGAGACAAGTCACAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: dadA
Ortholog function: D-amino acid dehydrogenase small subunit
Escherichia coli str. K-12 substr. MG1655 b1189 -116 4.7 AGATGTGAGCCAGCTCACCATA
Salmonella typhimurium LT2 STM1803 -107 4.6 ATATGTGAAGCACGTCACCATA
Citrobacter koseri ATCC BAA-895 CKO_01193 -107 4.5 AGATGTGAGGTGCGTCACCATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02309 -106 4.1 TGCTGTGAGTTAAGTCACCATA
Enterobacter sp. 638 Ent638_2363 -107 4.3 AGGTGTGAGGTAAGTCACCATA
Serratia proteamaculans 568 Spro_2746 -113 4.6 AATTGTGAATGTTGTCACGTTT
Proteus mirabilis HI4320 PMI1509 -121 4.7 AAATGTGATTTGACTCTAAAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu2561 -114 5.4 AATTGTGATCTAAATCATAAAT
Position: -113
Score: 3.8
Sequence: CTTTATGACTGCTTTCACCATT
Locus tag: YPZ3_1698
YPZ3_1698 -113 3.8 CTTTATGACTGCTTTCACCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadR
Ortholog function: fatty acid metabolism regulator
Escherichia coli str. K-12 substr. MG1655 b1187 -21 3.9 CTGTGTTATGGAAATCTCACTA
Salmonella typhimurium LT2 STM1805 -21 3.8 CTGTGTAATGGAAATCTCACTA
Enterobacter sp. 638 Ent638_2365 -21 3.8 CTGTGTAATGGAAATCTCACTA
Yersinia pestis KIM y2177 -113 3.8 CTTTATGACTGCTTTCACCATT
Proteus mirabilis HI4320 PMI1510 -111 4.4 TTTTATGATGCCATTCACTATT
-84 3.8 ATGGTTGAGCTATATCAAAATT
Position: -112
Score: 3.7
Sequence: TGTTGTGTTTGTTATCGAACTA
Locus tag: YPZ3_1749
YPZ3_1749 -112 3.7 TGTTGTGTTTGTTATCGAACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rnd
Ortholog function: ribonuclease D
Escherichia coli str. K-12 substr. MG1655 b1804 -131 3.7 AATAGTGACGCGCTTCGCAACC
Salmonella typhimurium LT2 STM1817 -131 3.7 AATAGTGACGCGCTTCGCAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02321 -97 3.7 AATAGTGACGCGCTTCGCAACC
Erwinia amylovora ATCC 49946 EAM_1955 -130 3.9 TTTAGTGATGCGCTTCGCAACC
Yersinia pestis KIM y2235 -73 3.7 TGTTGTGTTTGTTATCGAACTA
Serratia proteamaculans 568 Spro_2759 -99 3.9 ATTAGTGACGTACATCGCAACC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2371 -132 3.8 ATTAGTGATCGTTCTCGCAACC
-75 3.7 TAAAATAATGTTAATAACAATA
Proteus mirabilis HI4320 PMI1167 -121 4.4 TTTAGTGATACACTTCGCATCT
Photorhabdus luminescens subsp. laumondii TTO1 plu2135 -288 3.8 AAATGCTATCTTAAGCAAAAAA
-137 4 ATTAGTGATGTGTATCTCAACC
Position: -131
Score: 4.1
Sequence: AATAGTGATGTATATCTCAACC
Locus tag: YPZ3_1750
YPZ3_1750 -131 4.1 AATAGTGATGTATATCTCAACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadD
Ortholog function: long-chain-fatty-acid--CoA ligase
Escherichia coli str. K-12 substr. MG1655 b1805 -131 3.7 AATAGTGACGCGCTTCGCAACC
Salmonella typhimurium LT2 STM1818 -131 3.7 AATAGTGACGCGCTTCGCAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02322 -97 3.7 AATAGTGACGCGCTTCGCAACC
Erwinia amylovora ATCC 49946 EAM_1956 -130 3.9 TTTAGTGATGCGCTTCGCAACC
Yersinia pestis KIM y2236 -80 4.1 AATAGTGATGTATATCTCAACC
Serratia proteamaculans 568 Spro_2760 -99 3.9 ATTAGTGACGTACATCGCAACC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2372 -132 3.8 ATTAGTGATCGTTCTCGCAACC
-75 3.7 TAAAATAATGTTAATAACAATA
Proteus mirabilis HI4320 PMI1166 -121 4.4 TTTAGTGATACACTTCGCATCT
Photorhabdus luminescens subsp. laumondii TTO1 plu2134 -288 3.8 AAATGCTATCTTAAGCAAAAAA
-137 4 ATTAGTGATGTGTATCTCAACC
Position: -222
Score: 4.1
Sequence: TAATATGACCTGTGTCTAATTT
Locus tag: YPZ3_1758
YPZ3_1758 -222 4.1 TAATATGACCTGTGTCTAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: zwf
Ortholog function: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Escherichia coli str. K-12 substr. MG1655 b1852 -208 3.9 TAACATGATCAGTGTCAGATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02367 -225 3.8 TTACATGATCAGGGTCGTATTT
Yersinia pestis KIM y2244 -231 4.1 TAATATGACCTGTGTCTAATTT
Proteus mirabilis HI4320 PMI1157 -225 3.7 AAGTATGACCTGTGTCTAACTT
Photorhabdus luminescens subsp. laumondii TTO1 plu2122 -234 4.2 TAATTTAATGTTTTTCATAAAA
Position: -116
Score: 3.7
Sequence: AAATTAGACACAGGTCATATTA
Locus tag: YPZ3_1759
YPZ3_1759 -116 3.7 AAATTAGACACAGGTCATATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hexR
Ortholog function: Phosphogluconate repressor HexR, RpiR family
Escherichia coli str. K-12 substr. MG1655 b1853 -151 3.9 AAATCTGACACTGATCATGTTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02368 -134 3.6 AAATACGACCCTGATCATGTAA
Yersinia pestis KIM y2245 -152 3.7 AAATTAGACACAGGTCATATTA
Proteus mirabilis HI4320 PMI1156 -58 3.6 AACCGTTATAGATTTCTCCTTT
Photorhabdus luminescens subsp. laumondii TTO1 plu2121 -132 3.7 TTTTATGAAAAACATTAAATTA
Position: -208
Score: 4.5
Sequence: CACTGTGATGTACTTAACAAAA
Locus tag: YPZ3_1870
YPZ3_1870 -208 4.5 CACTGTGATGTACTTAACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cycA2
Ortholog function: D-alanine/D-serine/glycine permease
Escherichia coli str. K-12 substr. MG1655 b4208 -198 4.7 TTTTGTGAGCTGTTTCGCGTTA
Salmonella typhimurium LT2 STM4398 -193 5.1 TTTTGTGAGCTAATTCGCATTA
-170 3.9 CAAAGTGATATAACACTCATTT
Citrobacter koseri ATCC BAA-895 CKO_03624 -199 4.4 TTTTGTGAGCTAATTCGCGTTG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04601 -192 4.7 TTTTGTGAGCTATTTCGCGTTA
-169 3.8 ATGAGTGATATAACACTCACTT
Enterobacter sp. 638 Ent638_0378 -201 4.2 TTTTGTGAGCTGTTTTGCATTG
Yersinia pestis KIM y2447 -199 4.5 CACTGTGATGTACTTAACAAAA
-118 3.7 TAATATTAAATTATTCGCAAAT
Proteus mirabilis HI4320 PMI1614 -102 4.4 TTCTGAGATTTGTGTCACAATA
Photorhabdus luminescens subsp. laumondii TTO1 plu1965 -102 4.6 TATAGTAATCTGTGTCACAATA
Position: -310
Score: 3.8
Sequence: TAATGTGATGTGGCGTGAGTTT
Locus tag: YPZ3_1876
YPZ3_1876 -310 3.8 TAATGTGATGTGGCGTGAGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: putP
Ortholog function: Proline/sodium symporter PutP (TC 2.A.21.2.1)
Escherichia coli str. K-12 substr. MG1655 b1015 -207 3.6 AAATGTGAGAGAGTGCAACCTG
Salmonella typhimurium LT2 STM1125 -204 3.6 AAATGTGAGAGAGTGCAACCTG
Citrobacter koseri ATCC BAA-895 CKO_02041 -80 3.6 AAATGTGAGAGAGTGCAACCTG
Enterobacter sp. 638 Ent638_1542 -249 3.7 TTTTATGCGGCACTTAACACTT
Serratia proteamaculans 568 Spro_2930 -211 3.9 AAATGTGACGCAGGGTAAACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4218 -130 3.7 TTGTGCAACCTTGTTAACAAAT
Proteus mirabilis HI4320 PMI1615 -220 3.8 TAGTGTGAAGTTACATACAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1958 -243 4.4 AAATGTGATTCAGTAAACGTTT
Position: -143
Score: 4.8
Sequence: AATTGTTATCAAGATCACGAAT
Locus tag: YPZ3_1957
YPZ3_1957 -143 4.8 AATTGTTATCAAGATCACGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hpaG
Ortholog function: 4-hydroxyphenylacetate catabolism
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04789 -125 4.4 TTGTGTTAATCCGATCACAAAA
Serratia proteamaculans 568 Spro_0625 -123 5 TTTTGTTATCACGATCACAAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu0990 -159 3.7 AATAATGATAAAAAACAAATTT
-129 4.9 TATTGTTACTGAGATCACAATT
Position: -262
Score: 5
Sequence: ATTCGTGATCTTGATAACAATT
Locus tag: YPZ3_1958
YPZ3_1958 -262 5 ATTCGTGATCTTGATAACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hpaR
Ortholog function: 4-hydroxyphenylacetate catabolism
Yersinia pestis KIM y2548 -253 5 ATTCGTGATCTTGATAACAATT
Serratia proteamaculans 568 Spro_0624 -224 5.2 ATTTGTGATCGTGATAACAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0991 -285 3.9 AATTTTAATTGTGATCTCAGTA
-279 5 AATTGTGATCTCAGTAACAATA
Position: -231
Score: 3.9
Sequence: ATAGATGAGCAATGTCACATAA
Locus tag: YPZ3_1960
YPZ3_1960 -231 3.9 ATAGATGAGCAATGTCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: manX
Ortholog function: PTS enzyme IIAB, mannose-specific
Yersinia pestis KIM y2551 -231 3.9 ATAGATGAGCAATGTCACATAA
Position: -172
Score: 3.6
Sequence: TGATTTGATTTAATACAAATCA
Position: 20
Score: 3.5
Sequence: TAATGTGCTGGTATTTGCAACA
Locus tag: YPZ3_1989
YPZ3_1989 -172 3.6 TGATTTGATTTAATACAAATCA
20 3.5 TAATGTGCTGGTATTTGCAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tcyP
Ortholog function: L-cystine uptake protein TcyP
Escherichia coli str. K-12 substr. MG1655 b1729 -90 3.9 ATATAAGAGCCAGCTCACAGTT
Salmonella typhimurium LT2 STM1320 -91 3.9 ATATAAGAGCCAGCTCACAGTT
Citrobacter koseri ATCC BAA-895 CKO_01755 -90 3.7 ATATAAGAGGTCGGTCACAGTT
Yersinia pestis KIM y1878 -166 3.6 TGATTTGATTTAATACAAATCA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2410 -176 3.7 TGACGTTATCTGCTGCACCCAT
Position: -198
Score: 4
Sequence: ACATGTGCGACAGATCACATTC
Locus tag: YPZ3_2041
YPZ3_2041 -198 4 ACATGTGCGACAGATCACATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: lacZ
Ortholog function: beta-D-galactosidase
Escherichia coli str. K-12 substr. MG1655 b0344 -110 4.7 TAATGTGAGTTAGCTCACTCAT
Citrobacter koseri ATCC BAA-895 CKO_02825 -110 4.4 TTGTGTGAGTCAGTTCACTCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_pKPN3p05871 -109 4.6 TAATGTGAGTCAGCTCACTCAT
Enterobacter sp. 638 Ent638_0928 -100 4.4 TTTTGTGATCGACTTCGCTTTG
Erwinia amylovora ATCC 49946 EAM_0926 -94 3.8 TGTTGCGATAGCCATCACATCC
Yersinia pestis KIM y1817 -168 4 ACATGTGCGACAGATCACATTC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1490 -149 4.1 CTTTGTGATCGCTTCCACTTTA
-92 4.5 ATATGTTATGGAAAACACAAAT
Position: -57
Score: 3.7
Sequence: ATATTTGATCATGATCACTTCC
Locus tag: YPZ3_2061
YPZ3_2061 -57 3.7 ATATTTGATCATGATCACTTCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepT
Ortholog function: peptidase T
Escherichia coli str. K-12 substr. MG1655 b1127 -73 3.6 AAAAGTGACCTGACGCAATATT
Salmonella typhimurium LT2 STM1227 -73 3.6 AAAAGTGACCTGACGCAATATT
Citrobacter koseri ATCC BAA-895 CKO_01926 -73 3.6 AAAAGTGACCTGACGCAATATT
Enterobacter sp. 638 Ent638_1640 -31 3.6 AAAAGTGACCTGACGCAATATT
Yersinia pestis KIM y1791 -27 3.7 ATATTTGATCATGATCACTTCC
Serratia proteamaculans 568 Spro_2009 -188 4.1 CGTCGTGAAGAAGATCACACAT
Position: -152
Score: 3.8
Sequence: AAAGTTGATATATATCAATTTT
Locus tag: YPZ3_2072
YPZ3_2072 -152 3.8 AAAGTTGATATATATCAATTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Escherichia coli str. K-12 substr. MG1655 b1109 -154 3.9 AAACTTGATTAACATCAATTTT
Salmonella typhimurium LT2 STM1211 -154 4.1 AAACTTGATGCACATCAATTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01106 -152 4.1 AAACTTGATGCACATCAATTTT
Enterobacter sp. 638 Ent638_1624 -153 4 AAACTTGATTCATATCAATTTT
Erwinia amylovora ATCC 49946 EAM_1473 -55 3.7 TAAGGTTATTTTATTAACCTTT
Yersinia pestis KIM y1777 -152 3.8 AAAGTTGATATATATCAATTTT
Serratia proteamaculans 568 Spro_1926 -153 4.3 AAGTTTGATGTACATCAATTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1815 -153 4 TAAATTGATATATATCAATTTT
Edwardsiella tarda EIB202 ETAE_2070 -166 4.3 TTATTTGATTTGAATCAATTTT
Proteus mirabilis HI4320 PMI0875 -157 4.6 TTTTTTGATATAAATCAACTTT
Photorhabdus luminescens subsp. laumondii TTO1 plu2821 -154 3.8 GAATTTGATGTTGTTCAATTTT
Position: -166
Score: 4.4
Sequence: AAACGTGACGGCAATCAAACAT
Locus tag: YPZ3_2081
YPZ3_2081 -166 4.4 AAACGTGACGGCAATCAAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ptsG
Ortholog function: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655 b1101 -154 4.4 AAACGTGATAGCCGTCAAACAA
Salmonella typhimurium LT2 STM1203 -155 4.4 AAACGTGATAGCCGTCAAACAA
Citrobacter koseri ATCC BAA-895 CKO_01957 -229 4.4 AAACGTGATAGCCGTCAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01099 -155 4.4 AAACGTGATAGCCGTCAAACAA
Enterobacter sp. 638 Ent638_1616 -155 4.4 AAACGTGATAGCCGTCAAACAA
Erwinia amylovora ATCC 49946 EAM_1466 -162 4.6 AAACGTGATAGCCATCAAACAA
Yersinia pestis KIM y1767 -166 4.4 AAACGTGACGGCAATCAAACAT
Serratia proteamaculans 568 Spro_1914 -164 4.4 AAACGTGACTGTCATCAAACAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1805 -162 4.6 AAACGTGATAGCAATCAAACAT
Proteus mirabilis HI4320 PMI2292 -156 4.5 AAACGTGACAGCTATCATATAT
Position: -235
Score: 3.9
Sequence: AGATGTGAGCCATATAACCTCT
Locus tag: YPZ3_2165
YPZ3_2165 -235 3.9 AGATGTGAGCCATATAACCTCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dppB
Ortholog function: dipeptide ABC transporter, permease protein
Citrobacter koseri ATCC BAA-895 CKO_04993 -121 3.8 TTATGTGAACGGAATCCCCATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03898 -62 4 ATATGCAAACAACATCACAATT
Yersinia pestis KIM y3826 -211 3.9 AGATGTGAGCCATATAACCTCT
Serratia proteamaculans 568 Spro_0139 -271 3.8 TTGTTTGCTGTTTCTCACAGTC
Photorhabdus luminescens subsp. laumondii TTO1 plu0301 -223 3.7 AAATGTGCGCATTGTCATGTTT
Position: -151
Score: 3.6
Sequence: ATTAGTGATCATTGTCAAAACC
Position: -48
Score: 3.6
Sequence: TTGAGTGTTTGCTTACACATTA
Locus tag: YPZ3_2194
YPZ3_2194 -151 3.6 ATTAGTGATCATTGTCAAAACC
-48 3.6 TTGAGTGTTTGCTTACACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uspA3
Ortholog function: Universal stress protein A
Enterobacter sp. 638 Ent638_3909 -195 3.8 AAAGTCGATCGGGTTCACGTTT
Yersinia pestis KIM y3859 -151 3.6 ATTAGTGATCATTGTCAAAACC
Serratia proteamaculans 568 Spro_4691 -123 4 CAGTGTGATCGCCTCAACATAT
Proteus mirabilis HI4320 PMI3009 -290 3.6 AGTTGTTCGCTTTTTCAAAAAA
-113 3.8 AGTTGTGATCAAGGCAACATCT
Position: -147
Score: 4.1
Sequence: TATCATGATACCGGTAACAAAT
Position: -123
Score: 4.6
Sequence: AGATGTGACTTTTATCACAACA
Locus tag: YPZ3_2209
YPZ3_2209 -147 4.1 TATCATGATACCGGTAACAAAT
-123 4.6 AGATGTGACTTTTATCACAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntT
Ortholog function: gluconate transporter
Yersinia pestis KIM y3875 -217 4 TATGTTGATCTCTATCTCAGAA
-147 4.1 TATCATGATACCGGTAACAAAT
-123 4.6 AGATGTGACTTTTATCACAACA
Serratia proteamaculans 568 Spro_4651 -243 4.2 AAGTTTGATCTCTATCCCAGAA
-173 3.8 TATCATGATACCGGTAACAATG
-147 3.7 TGCGGTGATATTGATCGCGATA
Position: -129
Score: 4.4
Sequence: AAATGTTACCTCCATCACGCAT
Position: -57
Score: 3.6
Sequence: AATCGTGAGCGAAAACGAACAT
Locus tag: YPZ3_2221
YPZ3_2221 -129 4.4 AAATGTTACCTCCATCACGCAT
-57 3.6 AATCGTGAGCGAAAACGAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpD
Ortholog function: glycerol-3-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655 b3426 -116 4.4 TAATGTTATACATATCACTCTA
Salmonella typhimurium LT2 STM3526 -116 4.4 TAATGTTATACATATCACTCTA
Citrobacter koseri ATCC BAA-895 CKO_04845 -116 4.5 TAATGTTATATGTATCACTCTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03792 -119 3.7 ATATGTTACACCCATCACTTCA
-58 3.7 TATAGTGAGCGATATCGAGCAT
Enterobacter sp. 638 Ent638_3835 -116 4.4 TTATGTTATCTCTATCACTCAA
-55 4 TATTATGAGCGATATCGAACAT
Erwinia amylovora ATCC 49946 EAM_3265 -124 4 AGACGTTATCGGCATCACGCAT
Yersinia pestis KIM y3891 -129 4.4 AAATGTTACCTCCATCACGCAT
Serratia proteamaculans 568 Spro_4642 -129 3.6 AACTGTTACCTCTATCACGCCT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4141 -144 4.3 TAATGTGACAACTATCATCATA
-124 4.4 TATTGTTAGCTTCATCACGCAT
Edwardsiella tarda EIB202 ETAE_3312 -124 4.3 TTGTGTTATCCGCATCGCGTAA
Proteus mirabilis HI4320 PMI2930 -129 4.4 AATTGTTATTTATATCACGCAG
Position: -208
Score: 5.4
Sequence: TAATGTGATCTGGATCTCAATT
Position: -158
Score: 4.6
Sequence: ATTTGTGATAGCGCTATCATTT
Locus tag: YPZ3_2269
YPZ3_2269 -208 5.4 TAATGTGATCTGGATCTCAATT
-158 4.6 ATTTGTGATAGCGCTATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: CKO_00488
Ortholog function: LacI-family transcriptional regulator
Salmonella typhimurium LT2 STM2345 -192 4 AGCTGCGATCGTTATCACAAAG
-143 4.6 AATTGTGATAGCGCTATCAAAT
Citrobacter koseri ATCC BAA-895 CKO_00488 -192 4.6 ATCTGTGATCATATTCACAAAG
-143 4.5 ATATGTGATAGCGCTATCAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01748 -155 4.2 AACTGTGATACACCTCCCAAAG
-53 3.6 AGTTATAATGCGATTCGCAGAT
Enterobacter sp. 638 Ent638_2847 -178 4.1 AGCTGCGATCAAGATCACAAAG
-129 4.6 AATTGTGATAGCGCTATCAAAT
Yersinia pestis KIM y1619 -208 5.4 TAATGTGATCTGGATCTCAATT
-158 4.6 ATTTGTGATAGCGCTATCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3772 -246 4.5 TAATGTGATTAACATCCAAAAA
-196 4 AACTGTGACCGGCTTAGCACAA
Edwardsiella tarda EIB202 ETAE_3025 -210 4.3 TTTCGTGATAGCGCTATCATTT
Proteus mirabilis HI4320 PMI1778 -139 4.2 AATTGTGATAGCGCTATTATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu1978 -195 3.8 GCTAGTGATATTAGTCACAAAT
-145 4.7 AATTGTGATAGCGCTATCATTT
Position: -268
Score: 3.8
Sequence: TGGTGCGATTCGTGTCTCAAAA
Locus tag: YPZ3_2309
YPZ3_2309 -268 3.8 TGGTGCGATTCGTGTCTCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnH2
Ortholog function: glutamate and aspartate transporter subunit
Yersinia pestis KIM y1189 -268 3.8 TGGTGCGATTCGTGTCTCAAAA
Proteus mirabilis HI4320 PMI0437 -142 4 TATTGAGAGATAGCTCTCGTAT
Position: -215
Score: 5.1
Sequence: TTTTGTGATAAATATCACCAAA
Locus tag: YPZ3_2320
YPZ3_2320 -215 5.1 TTTTGTGATAAATATCACCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagB
Ortholog function: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Escherichia coli str. K-12 substr. MG1655 b0678 -212 4.3 AAATTTAATTCGTATCGCAAAT
-178 4.6 TTTTGTGAGTTTTGTCACCAAA
Salmonella typhimurium LT2 STM0684 -205 3.7 AAAATTAATTCGCCTCGCAAAT
-171 4.7 TTTTGTGATTATAATCACTAAA
Citrobacter koseri ATCC BAA-895 CKO_02486 -218 3.8 AAAATTAATTCGTATCGCAAAT
-184 5.2 TTTTGTGATTTGAATCACCAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00699 -217 3.8 AAAATTAATTCGTATCGCAAAT
-183 5 TTTTGTGATAATTATCACCAAA
Enterobacter sp. 638 Ent638_1193 -218 3.8 AAAATTAATTCGTATCGCAAAT
-184 4.6 TTTTGTGAGTTTTGTCACCAAA
Erwinia amylovora ATCC 49946 EAM_1147 -195 4.9 ATATGTGATTAAAGTCACCTTA
Yersinia pestis KIM y1202 -214 5.1 TTTTGTGATAAATATCACCAAA
Serratia proteamaculans 568 Spro_1227 -194 5.3 TTTTGTGATTTACATCACCAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1326 -180 5 TTATGTGATAAAAATCACCAAA
Edwardsiella tarda EIB202 ETAE_2617 -190 5 ATTTGTGATAACTATCACCAAT
Proteus mirabilis HI4320 PMI0454 -217 4.9 ATTTGTGATTAAAGTCACCTAT
Position: -333
Score: 4.9
Sequence: TTTGGTGATATTTATCACAAAA
Locus tag: YPZ3_2321
YPZ3_2321 -333 4.9 TTTGGTGATATTTATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagE
Ortholog function: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
Enterobacter sp. 638 Ent638_1194 -162 4.4 TTTGGTGACAAAACTCACAAAA
-128 3.6 ATTTGCGATACGAATTAATTTT
Yersinia pestis KIM y1203 -206 4.9 TTTGGTGATATTTATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1327 -202 5 TTTGGTGATTTTTATCACATAA
Edwardsiella tarda EIB202 ETAE_2616 -157 4.8 ATTGGTGATAGTTATCACAAAT
Proteus mirabilis HI4320 PMI0455 -150 4.6 ATAGGTGACTTTAATCACAAAT
Position: -244
Score: 4.5
Sequence: TTTTGCGATAACCATCACATTG
Locus tag: YPZ3_2362
YPZ3_2362 -244 4.5 TTTTGCGATAACCATCACATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: chbB
Ortholog function: N,N'-diacetylchitobiose-specific PTS system , EIIB component
Yersinia pestis KIM y1251 -214 4.5 TTTTGCGATAACCATCACATTG
Serratia proteamaculans 568 Spro_0834 -177 4.6 ATTTGCGAGACAGATCACACTA
-143 3.6 AAATGTGAAGAGGGTCAATCAG
Position: -184
Score: 3.8
Sequence: AAAATTGATATAAAACATAAAT
Position: -131
Score: 4.2
Sequence: AAAATTGATTTGAATCAAAGAA
Locus tag: YPZ3_2386
YPZ3_2386 -184 3.8 AAAATTGATATAAAACATAAAT
-131 4.2 AAAATTGATTTGAATCAAAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: grcA
Ortholog function: Autonomous glycyl radical cofactor
Serratia proteamaculans 568 Spro_3682 -140 3.8 AAAATTGACTTTAATCAAAGAA
Position: -116
Score: 4.7
Sequence: TTATGAGATGTCAGTCACAAAA
Locus tag: YPZ3_2622
YPZ3_2622 -116 4.7 TTATGAGATGTCAGTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glk
Ortholog function: glucokinase
Escherichia coli str. K-12 substr. MG1655 b2388 -116 4.1 TTGTGTGACCCAGATCGATATT
Salmonella typhimurium LT2 STM2403 -116 3.9 TTCTGTGATGAAGATCTATATT
Citrobacter koseri ATCC BAA-895 CKO_00412 -116 4.5 TTATGTGATGCAGATCGATATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02738 -117 4.4 AAATGTGACCTGTGTCGCTAAA
Enterobacter sp. 638 Ent638_2921 -116 3.8 TTCTGTGACGAAGATCGATTAT
Yersinia pestis KIM y1505 -113 4.7 TTATGAGATGTCAGTCACAAAA
Serratia proteamaculans 568 Spro_3407 -116 4.8 TTTTGTGATCCGGATCGCTAAT
Position: -136
Score: 4.4
Sequence: TTATGTGATCAAGCCCACTAAT
Position: -84
Score: 3.9
Sequence: ATTTGTGGTTCACATCTCTTTT
Locus tag: YPZ3_2628
YPZ3_2628 -136 4.4 TTATGTGATCAAGCCCACTAAT
-84 3.9 ATTTGTGGTTCACATCTCTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nupC
Ortholog function: Nucleoside permease NupC
Yersinia pestis KIM y1499 -136 4.4 TTATGTGATCAAGCCCACTAAT
-84 3.9 ATTTGTGGTTCACATCTCTTTT
Serratia proteamaculans 568 Spro_3416 -84 3.6 ATTTGCAATAGACCTCTCGTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3183 -84 3.7 TTTTGCGTCCTTCCTCTCATTT
-31 3.9 AAATTTGGCCTGCCTCATATTT
Position: -92
Score: 3.7
Sequence: GATTGTGATAAATCACTCACTA
Locus tag: YPZ3_2673
YPZ3_2673 -92 3.7 GATTGTGATAAATCACTCACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: maeB
Ortholog function: malic enzyme
Escherichia coli str. K-12 substr. MG1655 b2463 -257 3.9 ATGAGTGCGTTAATTCACACTT
Salmonella typhimurium LT2 STM2472 -240 3.8 ATGAGTGTGTTGATTCACACTT
Enterobacter sp. 638 Ent638_2958 -231 4.1 ATACATGACGTACTTAACAAAA
Yersinia pestis KIM y1449 -92 3.7 GATTGTGATAAATCACTCACTA
Serratia proteamaculans 568 Spro_3472 -209 3.6 CTTTGTTATCAAACTCACTATC
-90 4.1 GTTTGTGACGTTTCTCTCACTA
Photorhabdus luminescens subsp. laumondii TTO1 plu2719 -74 4 TGTTATGATTTGACACACAGTA
Position: -180
Score: 3.6
Sequence: TAGCGTGCTAATTATAGCATAA
Locus tag: YPZ3_2763
YPZ3_2763 -180 3.6 TAGCGTGCTAATTATAGCATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tesB
Ortholog function: Acyl-CoA thioesterase II (EC 3.1.2.-)
Escherichia coli str. K-12 substr. MG1655 b0452 -138 3.9 AAGTGTGGCACACATCACGCAT
Citrobacter koseri ATCC BAA-895 CKO_02706 -135 3.9 AAGTGTGGCATATCTCACTTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00415 -139 3.8 AAGTGTGGCACAGATCTCAGAT
Enterobacter sp. 638 Ent638_0920 -131 4 AAGTGTGGCACATATCACTTAT
Yersinia pestis KIM y1043 -153 3.6 TAGCGTGCTAATTATAGCATAA
Serratia proteamaculans 568 Spro_1111 -54 3.6 TGCCGTGATATTCCGCACACTG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1162 -154 3.7 TAGTATGATTCAATAAACACAA
Position: -137
Score: 4.5
Sequence: ATCTGTGACCCCCTTAACATAA
Locus tag: YPZ3_2784
YPZ3_2784 -137 4.5 ATCTGTGACCCCCTTAACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoA
Ortholog function: cytochrome o ubiquinol oxidase subunit II
Yersinia pestis KIM y1021 -137 4.5 ATCTGTGACCCCCTTAACATAA
Serratia proteamaculans 568 Spro_1090 -135 4.2 ATCTGTGACCCCCTTAACAGAA
Proteus mirabilis HI4320 PMI0108 -194 3.6 AAATTATAGTTAATTCACAATA
-147 3.6 TTAATTACTTGTGATCACATTA
-141 4.3 ACTTGTGATCACATTAACACAA
Position: -123
Score: 3.7
Sequence: TTATTTTATACAAAACATATAT
Locus tag: YPZ3_2847
YPZ3_2847 -123 3.7 TTATTTTATACAAAACATATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yafK
Ortholog function: hypothetical protein
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00238 -208 3.7 AAATGCGAGCTATTGCGCAAAG
Yersinia pestis KIM y0949 -217 3.7 TTATTTTATACAAAACATATAT
Serratia proteamaculans 568 Spro_0952 -136 4.2 TTTTTTTATACACAACACATAT
Proteus mirabilis HI4320 PMI0351 -297 3.7 AATTGTTACTATTTTCTCTTAT
-228 3.7 TCGAGTGATTTAGCTCAAGCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1195 -232 3.9 TCAAGTGATTTAGTTCAAGCAA
Position: -84
Score: 4.8
Sequence: AAAAGTGATCTCGATCATACAT
Locus tag: YPZ3_2884
YPZ3_2884 -84 4.8 AAAAGTGATCTCGATCATACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: raiA
Ortholog function: stationary phase translation inhibitor and ribosome stability factor
Escherichia coli str. K-12 substr. MG1655 b2597 -81 4.8 TTATGAGATTTTCATCACACAT
Citrobacter koseri ATCC BAA-895 CKO_03918 -40 5.2 TAATGTGATTTAAATCACGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02919 -88 5.6 AAATGTGATTTATATCACACAT
Enterobacter sp. 638 Ent638_3076 -81 5.4 ATGTGTGATTTAGATCACACAT
Erwinia amylovora ATCC 49946 EAM_2617 -83 5.2 AAATGTGATTTCAATCACGATT
Serratia proteamaculans 568 Spro_0882 -83 4.8 ATACGTGATTTTCATCACGCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3349 -86 4 AAAAGCGATCAATCTCACGCTT
Edwardsiella tarda EIB202 ETAE_2834 -82 3.8 ATCCGTGATTTTCCTCTCACAC
Proteus mirabilis HI4320 PMI0391 -82 4.6 AAAAGTGATCTTGATCATGTTT
Photorhabdus luminescens subsp. laumondii TTO1 plu1266 -87 5.1 AATAGTGATTTAGATCACCTTT
Position: -276
Score: 4.3
Sequence: TTATGTGAACGAATTAACACTG
Locus tag: YPZ3_3012
YPZ3_3012 -276 4.3 TTATGTGAACGAATTAACACTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: acnB
Ortholog function: Aconitate hydratase 2 (EC 4.2.1.3)
Escherichia coli str. K-12 substr. MG1655 b0118 -144 3.5 TTTTGTAAACAGATTAACACCT
Salmonella typhimurium LT2 STM0158 -157 3.9 TTTTGTAAACAGATTAACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00124 -260 3.5 TTTTGTAAACAGATTAACACCT
Yersinia pestis KIM y0771 -276 4.3 TTATGTGAACGAATTAACACTG
Serratia proteamaculans 568 Spro_4008 -192 3.9 TTATGTGAACGAATTAACAACC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3778 -163 4.3 TTATGTGAACGAATTAACAATC
Proteus mirabilis HI4320 PMI2040 -177 4.5 TTATGTGAACGAATTAACATAG
Photorhabdus luminescens subsp. laumondii TTO1 plu3619 -261 3.6 TTCTGTGAACGAATTAACATCG
Position: -253
Score: 3.3
Sequence: ATTGGTGATCTTGTTATTACTG
Position: -57
Score: 3.2
Sequence: GAAATTGATTCGCCTAAAAAAT
Locus tag: YPZ3_3014
YPZ3_3014 -253 3.3 ATTGGTGATCTTGTTATTACTG
-57 3.2 GAAATTGATTCGCCTAAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lpdA
Ortholog function: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Escherichia coli str. K-12 substr. MG1655 b0116 -224 3.3 AATTGTTAACAATTTTGTAAAA
Salmonella typhimurium LT2 STM0154 -153 3.5 GTTTGTGAGGTTATTAGCGAAA
Citrobacter koseri ATCC BAA-895 CKO_03256 -95 3.3 AATTGTTAACAATTTTGTAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00120 -105 3.3 AATTGTTAACAATTTTGTAAAA
Yersinia pestis KIM y0769 -253 3.3 ATTGGTGATCTTGTTATTACTG
Serratia proteamaculans 568 Spro_4009 -246 3.6 TATGGTGATGTAATGAAAAAAG
Proteus mirabilis HI4320 PMI2044 -133 3.4 GGTTGTGAGATCTGTCATGTTA
Photorhabdus luminescens subsp. laumondii TTO1 plu3621 -131 3.9 TGTTGCGAGTTCTGTCACGTTA
Position: -214
Score: 4.2
Sequence: AAATGTGCTGGGTTTCATGATT
Position: -202
Score: 3.3
Sequence: TTTCATGATTTCGGTCAAGGTC
Position: -137
Score: 3.4
Sequence: TTTTGAAATTGGTATTACCAAT
Position: -67
Score: 3.4
Sequence: AAATATGGCCTACAACAAAATA
Locus tag: YPZ3_3017
YPZ3_3017 -214 4.2 AAATGTGCTGGGTTTCATGATT
-202 3.3 TTTCATGATTTCGGTCAAGGTC
-137 3.4 TTTTGAAATTGGTATTACCAAT
-67 3.4 AAATATGGCCTACAACAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhR
Ortholog function: Transcriptional repressor for pyruvate dehydrogenase complex
Escherichia coli str. K-12 substr. MG1655 b0113 -156 3.7 AAACGTTATATATGTCAAGTTG
-131 3.8 AAATGTGCACAGTTTCATGATT
Salmonella typhimurium LT2 STM0151 -157 3.5 AAACATGATTTCTGTAAAATTG
-120 3.2 TTTACTGATTTCAATCAAAACC
-79 3 CTTATTAAGCTTTCTCACGAAA
-54 3.4 TAATGGGACAGGTTCCAGATAA
Citrobacter koseri ATCC BAA-895 CKO_03260 -180 3.2 ATTTGTGCATAGTTACATCTTT
-157 3.1 AAACGTTATTTCTGTAATCTTG
-148 3.3 TTCTGTAATCTTGTTAAAATGT
-120 3.2 TTTACTGATTTCAATCAAAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00117 -155 3.2 AAATGTTATTTCTGTAAGGTTG
-118 3.2 TTTACTGATTTCAATCAAAACC
Enterobacter sp. 638 Ent638_0659 -120 3.2 TTTACTGATTTCAATCAAAACC
-77 3.1 TATTGTATTTTCTGGCGAAAAT
-68 3 TTTAGCGATACGAATATGAAAT
Erwinia amylovora ATCC 49946 EAM_0746 -198 3.3 TAAAGCGATCGGATTTAACAAT
Yersinia pestis KIM y0766 -151 4.2 AAATGTGCTGGGTTTCATGATT
-139 3.3 TTTCATGATTTCGGTCAAGGTC
-74 3.4 TTTTGAAATTGGTATTACCAAT
Serratia proteamaculans 568 Spro_4012 -132 3.1 AAATGTGCGGGTAACCTGATTT
-56 3.4 TTTTGAAATTGGTATTACCAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3790 -120 3.7 ATTGGTGATTTAGCTCAAGGTC
-55 3.4 TTTTGAAATTGGTATTACCAAT
Edwardsiella tarda EIB202 ETAE_0658 -143 3.2 TTTCATGATTTACATCAATAGT
Proteus mirabilis HI4320 PMI2047 -218 3.1 TGTTTTTAATCTTTTCTAATAA
-199 4.4 TAATGCGATCTAGTTATCAAAT
-181 4.2 AAATTTGATGAATTTATCAAAT
-158 3 ATTTGTTAAAATTTGCAGGTTT
-138 3.9 TTTTATGATTTCGCTCAACAAC
-95 3.1 CTTTGTTACTTTATTATCCATT
-89 3.1 TACTTTATTATCCATTACATTA
Position: -123
Score: 3.8
Sequence: TTACGTTATTGCAATAACCTAA
Locus tag: YPZ3_3022
YPZ3_3022 -123 3.8 TTACGTTATTGCAATAACCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppdD
Ortholog function: predicted major pilin subunit
Escherichia coli str. K-12 substr. MG1655 b0108 -145 3.2 CTTCGTAACGCCTCGCAAATTT
Citrobacter koseri ATCC BAA-895 CKO_03268 -146 3.4 TTTTTCGAGCGGCCTCGCAAAC
Yersinia pestis KIM y0761 -123 3.8 TTACGTTATTGCAATAACCTAA
Proteus mirabilis HI4320 PMI2049 -146 4.3 TAATGCGAACTTGCTCTCAATA
Position: -42
Score: 3.9
Sequence: ATTAGTGATGAATTACACCTTC
Locus tag: YPZ3_3023
YPZ3_3023 -42 3.9 ATTAGTGATGAATTACACCTTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pulE
Ortholog function: conserved protein with nucleoside triphosphate hydrolase domain
Escherichia coli str. K-12 substr. MG1655 b0107 -145 3.2 CTTCGTAACGCCTCGCAAATTT
Citrobacter koseri ATCC BAA-895 CKO_03269 -146 3.4 TTTTTCGAGCGGCCTCGCAAAC
Yersinia pestis KIM y0760 -123 3.8 TTACGTTATTGCAATAACCTAA
Proteus mirabilis HI4320 PMI2050 -146 4.3 TAATGCGAACTTGCTCTCAATA
Photorhabdus luminescens subsp. laumondii TTO1 plu3639 -227 4.1 AAATGTGAATCGACAAACAATT
-182 3.2 ATATTTGAATTTTAATTCATTA
Position: -259
Score: 3.8
Sequence: AAATGTGATCGGGCGTAAAACA
Locus tag: YPZ3_3026
YPZ3_3026 -259 3.8 AAATGTGATCGGGCGTAAAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: coaE
Ortholog function: dephospho-CoA kinase
Erwinia amylovora ATCC 49946 EAM_0727 -75 4.4 TCGTGTGATCTGCGCCACATTA
Yersinia pestis KIM y0757 -259 3.8 AAATGTGATCGGGCGTAAAACA
Serratia proteamaculans 568 Spro_0774 -158 3.8 CAGTGTGACCGCCCGCTCATTT
Edwardsiella tarda EIB202 ETAE_0650 -272 4 AAATGTGATCATACAAACGATT
Proteus mirabilis HI4320 PMI2052 -80 3.8 TCTTGTGATAAAAATCAGTTTA
Position: -96
Score: 4.8
Sequence: TAATTTGAGCCGGTTCACACTT
Locus tag: YPZ3_3079
YPZ3_3079 -96 4.8 TAATTTGAGCCGGTTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deaD
Ortholog function: ATP-independent RNA helicase
Salmonella typhimurium LT2 STM3280.S -154 3.9 CTTTTTGATTGCCATCACCTTC
-99 4.4 TACTTTGAGCCGGTTCACACTT
Citrobacter koseri ATCC BAA-895 CKO_04559 -103 3.9 CTTTTTGATTGCCATCACCTTC
-48 4.4 TACTTTGAGCCGGTTCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03570 -154 3.8 TTTTTTGCTTGCCATCACCTTC
-99 4.4 TACTTTGAGCCGGTTCACACAT
Enterobacter sp. 638 Ent638_3599 -154 4.1 TCTTATGATTGCCATCACCTTA
-99 4.4 TACTTTGAGCCGGTTCACACTT
Erwinia amylovora ATCC 49946 EAM_3065 -99 4.8 TAATTTGAGCCGGTTCACACTT
Yersinia pestis KIM y0696 -96 4.8 TAATTTGAGCCGGTTCACACTT
Serratia proteamaculans 568 Spro_0495 -96 4.8 TAATTTGAGCCGGTTCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0718 -96 4.4 CAATTTGAGCCGGTTCACACTT
Edwardsiella tarda EIB202 ETAE_0411 -96 4.8 TAATTTGAGCCGGTTCACACTT
Proteus mirabilis HI4320 PMI3424 -80 5 TAATTTGAGCCAGTTCACATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu4523 -95 5 TAATTTGAGCCAGTTCACATTT
Position: -159
Score: 4.3
Sequence: TAACGTGATGTTATTTATAATT
Locus tag: YPZ3_3139
YPZ3_3139 -159 4.3 TAACGTGATGTTATTTATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dusB
Ortholog function: tRNA-dihydrouridine synthase B
Escherichia coli str. K-12 substr. MG1655 b3260 -297 4.4 AAGTGCGAGCAAGCTCACAAAA
-212 4.3 AATTGAGAACTTACTCAAATTT
Citrobacter koseri ATCC BAA-895 CKO_04672 -212 3.7 AAATGAGAAGTTACGCAAAATT
Enterobacter sp. 638 Ent638_3699 -299 4.1 AAATGGGACCCAGATCGCAAAG
Erwinia amylovora ATCC 49946 EAM_3146 -219 4 TATTGTTAACTTGCTCACAAGA
Yersinia pestis KIM y0213 -57 4.3 TAACGTGATGTTATTTATAATT
Proteus mirabilis HI4320 PMI3623 -94 3.8 TTTCGCGATTTGGTTAAACTTT
Photorhabdus luminescens subsp. laumondii TTO1 plu4088 -191 3.7 CTAAGTGATAAACTTTACCAAT
Position: -55
Score: 5.1
Sequence: ATGTGTGATCTAAATCACTTTT
Locus tag: YPZ3_3167
YPZ3_3167 -55 5.1 ATGTGTGATCTAAATCACTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aaeR
Ortholog function: LysR-family transcriptional regulator
Escherichia coli str. K-12 substr. MG1655 b3243 -37 5.3 TTATGTGATCTAAATCACTTTT
Salmonella typhimurium LT2 STM3367 -37 5.3 TTATGTGATCTAAATCACTTTT
Citrobacter koseri ATCC BAA-895 CKO_04651 -37 5.3 ATATGTGATCTAAATCACTTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03652 -55 5.1 ATGTGTGATCTAAATCACTTTT
Enterobacter sp. 638 Ent638_3680 -37 5.3 ATATGTGATCTAAATCACTTTT
Erwinia amylovora ATCC 49946 EAM_3128 -37 5.3 AAATGTGATCTAAATCACTTTT
Yersinia pestis KIM y0180 -55 5.1 ATGTGTGATCTAAATCACTTTT
Serratia proteamaculans 568 Spro_4393 -37 4.9 ATCTGTGATCTAAATCACTTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0276 -37 5.1 TAGTGTGATCTAAATCACTTTT
Edwardsiella tarda EIB202 ETAE_3129 -131 4.5 ATCTGTGACGCAAATCACTTTT
Position: -339
Score: 4.6
Sequence: ATTTGTGATCTTCAATACAAAA
Locus tag: YPZ3_3179
YPZ3_3179 -339 4.6 ATTTGTGATCTTCAATACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: treB
Ortholog function: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655 b4240 -101 3.8 AATTGTGATCTTCGCTGCGTTT
Citrobacter koseri ATCC BAA-895 CKO_03571 -156 3.8 ATTTGTGATCTTCGCTGCGTTT
Enterobacter sp. 638 Ent638_0439 -106 4 TATTGTGATCTTCACCCGATTT
Serratia proteamaculans 568 Spro_0529 -124 3.8 TTTTGTGATCCTCGCCCCAAAC
Photorhabdus luminescens subsp. laumondii TTO1 plu3288 -127 4.3 CAATGTGATCTTCAACCCATTT
Position: -116
Score: 3.8
Sequence: TTTTCTGCCAAACTTCACACTT
Position: -63
Score: 4.4
Sequence: TTTTGCGATACATATCGAATAT
Locus tag: YPZ3_3234
YPZ3_3234 -116 3.8 TTTTCTGCCAAACTTCACACTT
-63 4.4 TTTTGCGATACATATCGAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cpdB
Ortholog function: 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor
Escherichia coli str. K-12 substr. MG1655 b4213 -118 3.8 AACTGTGATAGTGTCATCATTT
-85 3.8 AATTGTGGCATTCTTCACTGTT
Salmonella typhimurium LT2 STM4403 -145 3.7 TTCTGTGAACACTCGCAAAAAA
Citrobacter koseri ATCC BAA-895 CKO_03616 -25 4.2 TTTTGTGTTTCAGATCTAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04607 -156 3.8 TTGTTTTATTTATATCGCATCA
-87 3.7 TTTTCTGGCAAGATTCACATTT
-35 4.2 TTCTGTGCTATCGCTCATAAAA
Enterobacter sp. 638 Ent638_0392 -34 4 TTTTGTGGCTTGGATCGAAAAA
Yersinia pestis KIM y0653 -148 3.6 AACTGTGAGCGTCTACGCGTTA
-116 3.8 TTTTCTGCCAAACTTCACACTT
-63 4.4 TTTTGCGATACATATCGAATAT
Serratia proteamaculans 568 Spro_0453 -95 3.8 TTTTCTGCCACACTTCACAGTT
Position: -337
Score: 3.8
Sequence: AAGTGTGAAGTTTGGCAGAAAA
Locus tag: YPZ3_3235
YPZ3_3235 -337 3.8 AAGTGTGAAGTTTGGCAGAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysQ
Ortholog function: PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase
Escherichia coli str. K-12 substr. MG1655 b4214 -126 3.6 AACAGTGAAGAATGCCACAATT
Salmonella typhimurium LT2 STM4404 -144 3.9 TTTTTTGCGAGTGTTCACAGAA
Citrobacter koseri ATCC BAA-895 CKO_03615 -178 4.1 TTTTTAGATCTGAAACACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04608 -178 4.1 TTTTATGAGCGATAGCACAGAA
-126 3.7 AAATGTGAATCTTGCCAGAAAA
-57 3.9 TGATGCGATATAAATAAAACAA
Enterobacter sp. 638 Ent638_0393 -167 3.9 TTTTTCGATCCAAGCCACAAAA
Erwinia amylovora ATCC 49946 EAM_0455 -158 4.2 AAATGTGACACAGCACGAATAA
Serratia proteamaculans 568 Spro_0454 -180 3.7 AACTGTGAAGTGTGGCAGAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3601 -258 3.7 TAAAGTGATTATCGTCTCTAAA
Position: -286
Score: 4.2
Sequence: TATTGTGCCTAACACCACAAAA
Locus tag: YPZ3_3274
YPZ3_3274 -286 4.2 TATTGTGCCTAACACCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: malE
Ortholog function: maltose ABC transporter periplasmic protein
Yersinia pestis KIM y0028 -286 4.2 TATTGTGCCTAACACCACAAAA
-257 4 CAGTGTTAACTGAGTCACAATA
Serratia proteamaculans 568 Spro_4472 -199 4 ATCTGTGATCTGCCTGGCAAAA
-165 3.6 TTTTGTGTCTGACGCCACAGAA
-136 4.4 CAATGTTAACTGGATCACACTA
Position: -288
Score: 3.3
Sequence: ATGAGTTATAGCCATTAAAAAT
Position: -226
Score: 3.4
Sequence: ATATGTTAACGATATGATAAAT
Locus tag: YPZ3_3288
YPZ3_3288 -288 3.3 ATGAGTTATAGCCATTAAAAAT
-226 3.4 ATATGTTAACGATATGATAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceB
Ortholog function: malate synthase A
Escherichia coli str. K-12 substr. MG1655 b4014 -117 3.6 AATTGTTTTTGATTTTGCATTT
Salmonella typhimurium LT2 STM4183 -168 3.3 TTAATTTATATTGTTATCAATA
Citrobacter koseri ATCC BAA-895 CKO_03906 -166 3.3 TATTTTTATTGTTATCAATAAG
Yersinia pestis KIM y0015 -254 3.3 ATGAGTTATAGCCATTAAAAAT
Serratia proteamaculans 568 Spro_4503 -228 3.5 TGTTGTTATGTTTATTAACCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3991 -185 3.3 TTTTTTAATTTTAATCTTCATT
Proteus mirabilis HI4320 PMI2764 -68 3.7 ATTTTTGATTTTTGTAAAAACT
Photorhabdus luminescens subsp. laumondii TTO1 plu4396 -65 3.8 GTTTTTGATTTATTTTAAATAT
Position: -149
Score: 5.4
Sequence: ATGTGTGATTTAAATCACAATT
Locus tag: YPZ3_3343
YPZ3_3343 -149 5.4 ATGTGTGATTTAAATCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: udp
Ortholog function: Uridine phosphorylase (EC 2.4.2.3)
Escherichia coli str. K-12 substr. MG1655 b3831 -144 5.2 TTATGTGATTTGCATCACTTTT
-92 4.2 CATGGTGATGAGTATCACGAAA
Salmonella typhimurium LT2 STM3968 -144 5.1 TATTGTGATGAACATCACTTTT
-92 4.1 CATAGTGATGGCTGTCACGAAA
Citrobacter koseri ATCC BAA-895 CKO_00173 -143 5.2 TTATGTGATGTAAATCACTATT
-91 3.9 CATGGTGATGAGCGTCACGAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04327 -143 5.2 TAATGTGATGTGTATCACTATT
-91 4.1 CTTGGTGACTATCATCACAAAA
Enterobacter sp. 638 Ent638_3962 -143 4.7 TAGTGTGATGCATGTCACTATT
Erwinia amylovora ATCC 49946 EAM_0200 -143 4.6 AATTGCGACTTGTATCACCTTT
-90 4 ATTAAGGATGTTCATCACATAA
Yersinia pestis KIM y0444 -149 5.4 ATGTGTGATTTAAATCACAATT
-97 4 CAAGGTGACATAAATCACGAAA
Serratia proteamaculans 568 Spro_0244 -143 5.3 TTTTGTGACTTTAATCACAAAA
-125 3.7 AAAAGTTATGTAGATTGCATTC
-91 4.1 CATAGTGATGGTTGTCACGAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0185 -197 5.1 AAAAGTGATTTAAGTCACATTT
Edwardsiella tarda EIB202 ETAE_0143 -148 4.7 TATTGTGAAAATAATCACAGTT
Proteus mirabilis HI4320 PMI3532 -145 5.1 ATTTGTGATAACTATCACGTTT
-93 3.6 ACAGGTGACGTCAATCACTAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4417 -271 5.2 TTTTGTGATTTATATCTCAAAA
-219 4 TGAAGTGACATTTATCACTAAA
Position: -197
Score: 3.4
Sequence: CGATGCGCTGCCCATAACAAAA
Locus tag: YPZ3_3351
YPZ3_3351 -197 3.4 CGATGCGCTGCCCATAACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ugpA
Ortholog function: SN-glycerol-3-phosphate transport system permease protein UgpA (TC 3.A.1.1.3)
Escherichia coli str. K-12 substr. MG1655 b3452 -182 3.6 ATCCGTGCCCCATCTCCCATTT
Salmonella typhimurium LT2 STM3556 -184 3.5 ATCCGTGCCGTAGCTCCCACTT
Citrobacter koseri ATCC BAA-895 CKO_04873 -185 3.3 TATTTTTCTGTCATTCGCGCAT
-162 3.2 TCATGTTACCTCGCGAGCATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03812 -88 3.4 TATTTTTCTGTAATTCGAACAT
Enterobacter sp. 638 Ent638_3855 -162 3.5 AGTTATTATTCCCGCCACATTA
-58 3.2 TCATGTTACCTCGCGAGCATAA
Erwinia amylovora ATCC 49946 EAM_3284 -171 3.9 GTGTGTGATGCCGTTAACACAG
Yersinia pestis KIM y0435 -197 3.4 CGATGCGCTGCCCATAACAAAA
Edwardsiella tarda EIB202 ETAE_3320 -63 3.4 CAATATGTTGTTTATCACTCAA
Position: -72
Score: 3.5
Sequence: AAAACTGATTTATTTCGCTCAT
Position: -41
Score: 4.1
Sequence: TTTTTTGATGTGAGCCACACAG
Locus tag: YPZ3_3352
YPZ3_3352 -72 3.5 AAAACTGATTTATTTCGCTCAT
-41 4.1 TTTTTTGATGTGAGCCACACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ugpB
Ortholog function: Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3)
Escherichia coli str. K-12 substr. MG1655 b3453 -182 3.6 ATCCGTGCCCCATCTCCCATTT
Salmonella typhimurium LT2 STM3557 -184 3.5 ATCCGTGCCGTAGCTCCCACTT
Citrobacter koseri ATCC BAA-895 CKO_04874 -185 3.3 TATTTTTCTGTCATTCGCGCAT
-162 3.2 TCATGTTACCTCGCGAGCATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03813 -88 3.4 TATTTTTCTGTAATTCGAACAT
Enterobacter sp. 638 Ent638_3856 -162 3.5 AGTTATTATTCCCGCCACATTA
-58 3.2 TCATGTTACCTCGCGAGCATAA
Erwinia amylovora ATCC 49946 EAM_3285 -171 3.9 GTGTGTGATGCCGTTAACACAG
Yersinia pestis KIM y0434 -72 3.5 AAAACTGATTTATTTCGCTCAT
-41 4.1 TTTTTTGATGTGAGCCACACAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2429 -145 3.5 TATCGCGATACAGTTCATCACT
Edwardsiella tarda EIB202 ETAE_3321 -63 3.4 CAATATGTTGTTTATCACTCAA
Position: -155
Score: 4.4
Sequence: ACCTGTGATTTTGATCACAATC
Locus tag: YPZ3_3381
YPZ3_3381 -155 4.4 ACCTGTGATTTTGATCACAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpA
Ortholog function: sn-glycerol-3-phosphate dehydrogenase subunit A
Escherichia coli str. K-12 substr. MG1655 b2241 -165 4.6 AAATGTGAATTGCCGCACACAT
Salmonella typhimurium LT2 STM2284 -163 5 TAATGTGAATTACAGCACATAT
Citrobacter koseri ATCC BAA-895 CKO_00536 -163 4.7 TAATGTGAATTACAGCACAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02647 -165 4.3 TACTGTGAAACATCGCACAATT
-115 3.8 ATGTGAGCACGAAATCACATAA
Enterobacter sp. 638 Ent638_2805 -163 4.1 TACTGTGAATCAACGCACAGAT
Yersinia pestis KIM y0404 -231 3.6 AATTGTTACCTATTTTATGAAA
-155 4.4 ACCTGTGATTTTGATCACAATC
Serratia proteamaculans 568 Spro_0200 -231 3.6 CGCTGTGATGGATGGCGCAATT
-138 4.9 AATCGTGATTATGATCACATTC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4165 -148 5.1 TTTAGTGATGCAAATCACACTT
Edwardsiella tarda EIB202 ETAE_3115 -247 4 TACTGTGAGAGATCGCTCATAT
-142 4.8 TAGAGTGATTTTGATCACATTG
Proteus mirabilis HI4320 PMI3592 -262 3.7 TACTGTGAAGTAATACTCAGTT
-170 5.5 ATTTGTGATTAGTATCACATAT
Position: -144
Score: 4.8
Sequence: AGTTGTGCTATGGCTCACAAAA
Locus tag: YPZ3_3385
YPZ3_3385 -144 4.8 AGTTGTGCTATGGCTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pldB
Ortholog function: Lysophospholipase L2 (EC 3.1.1.5)
Citrobacter koseri ATCC BAA-895 CKO_00166 -60 3.8 TATTGTGTCAGGCATCATAAAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04321 -56 3.8 TTGTGTGATACACGGTAAAAAA
Enterobacter sp. 638 Ent638_3971 -56 4.3 TTTTGTGATGCGTCACGAAAAA
Yersinia pestis KIM y0400 -144 4.8 AGTTGTGCTATGGCTCACAAAA
Serratia proteamaculans 568 Spro_0196 -88 3.8 TTGTAAGAATTGAATCACAATA
-53 4.2 TCTTGTGCCAGAGGTCACATTT
Edwardsiella tarda EIB202 ETAE_3343 -217 3.9 CGGTGTGATAATCCTCAAACTT
Position: -151
Score: 4
Sequence: AGGTGTTAGATTGATCACGTTT
Locus tag: YPZ3_3402
YPZ3_3402 -151 4 AGGTGTTAGATTGATCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyaA
Ortholog function: Adenylate cyclase (EC 4.6.1.1)
Yersinia pestis KIM y0382 -151 4 AGGTGTTAGATTGATCACGTTT
Serratia proteamaculans 568 Spro_0179 -115 4 AGGTGTTAGATTGATCACGTTT
Edwardsiella tarda EIB202 ETAE_0119 -119 4 AGGTGTTAAATTGATCACGTTT
Position: -229
Score: 3.8
Sequence: TGGTGTGACGCCGCTCATTATT
Locus tag: YPZ3_3449
YPZ3_3449 -229 3.8 TGGTGTGACGCCGCTCATTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytfQ
Ortholog function: Putative sugar ABC transport system, periplasmic binding protein YtfQ precursor
Escherichia coli str. K-12 substr. MG1655 b4227 -98 3.7 AAGTGTGATGTAACGCAATCTG
Citrobacter koseri ATCC BAA-895 CKO_03603 -130 3.7 AGTTGTGATTAACCTTTTATTT
Yersinia pestis KIM y0328 -229 3.8 TGGTGTGACGCCGCTCATTATT
Serratia proteamaculans 568 Spro_4768 -163 4.3 TGATGTGATGCCGCTCATTATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4236 -68 3.7 TATTGTTAGCCTACTTACCATA
Position: -43
Score: 3.7
Sequence: TTTATTGACATAAATAAAAATA
Locus tag: YPZ3_3466
YPZ3_3466 -43 3.7 TTTATTGACATAAATAAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Salmonella typhimurium LT2 STM4121 -44 3.5 AATTATGAATAAAAATACATTA
Citrobacter koseri ATCC BAA-895 CKO_03036 -110 4 ATTTGTGAATAAAAATACATTA
Enterobacter sp. 638 Ent638_4028 -44 3.8 AAATGTGAATAAAAATACACTA
Yersinia pestis KIM y0310 -43 3.7 TTTATTGACATAAATAAAAATA
Serratia proteamaculans 568 Spro_4781 -167 4 TATTGTGAATAAAAATACAATA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0192 -159 3.5 TATTTTGAATAAAAATACAATA
Edwardsiella tarda EIB202 ETAE_3482 -160 3.4 AATTATGAATAAAAATACAATA
Proteus mirabilis HI4320 PMI3237 -57 3.6 TTTTTTGAATAAAAATACATTA
Photorhabdus luminescens subsp. laumondii TTO1 plu4744 -59 3.6 TTTTTTGAATAAAAATACATTA
Position: -229
Score: 3.6
Sequence: TATTTTTATTTATGTCAATAAA
Locus tag: YPZ3_3467
YPZ3_3467 -229 3.6 TATTTTTATTTATGTCAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argE
Ortholog function: acetylornithine deacetylase
Escherichia coli str. K-12 substr. MG1655 b3957 -66 3.7 TAGTGTATTTTTATTCATAAAT
Salmonella typhimurium LT2 STM4120 -66 3.9 TAATGTATTTTTATTCATAATT
Citrobacter koseri ATCC BAA-895 CKO_03037 -27 4.3 TAATGTATTTTTATTCACAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04246 -27 4 TATTGTATTTTTATTCAAAATA
Enterobacter sp. 638 Ent638_4029 -66 4.2 TAGTGTATTTTTATTCACATTT
Erwinia amylovora ATCC 49946 EAM_0137 -66 3.8 TATTGTATTTTTATTCACTATT
Yersinia pestis KIM y0309 -223 3.6 TATTTTTATTTATGTCAATAAA
Serratia proteamaculans 568 Spro_4782 -71 4.3 TATTGTATTTTTATTCACAATA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0191 -65 4 TATTGTATTTTTATTCAAAATA
Edwardsiella tarda EIB202 ETAE_3483 -65 3.9 TATTGTATTTTTATTCATAATT
Proteus mirabilis HI4320 PMI3236 -65 3.9 TAATGTATTTTTATTCAAAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4745 -65 3.9 TAATGTATTTTTATTCAAAAAA
Position: -340
Score: 4.8
Sequence: ACTTGTGACAAATATCACATTT
Position: -296
Score: 4.8
Sequence: AATCGTGACATAAGTCACACTT
Position: -223
Score: 4.6
Sequence: AGATGTGATCTTAATCAACAAA
Locus tag: YPZ3_3490
YPZ3_3490 -340 4.8 ACTTGTGACAAATATCACATTT
-296 4.8 AATCGTGACATAAGTCACACTT
-223 4.6 AGATGTGATCTTAATCAACAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtlA
Ortholog function: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655 b3599 -206 4.5 TTTTGTGATGAACGTCACGTCA
-162 5.4 TTATGTGATTGATATCACACAA
-113 3.3 TTCAGTGCCAGATTTCGCAGTA
Salmonella typhimurium LT2 STM3685 -207 4.8 CTTTGTGATCAATATCACATCA
-163 5.4 TTATGTGACGCAAATCACATAA
Citrobacter koseri ATCC BAA-895 CKO_05054 -203 5.2 TTTTGTGATCAATATCACATCA
-159 5 TCATGTGATCCAAATCACACAA
-110 3.4 TTCAGTGCCAGATTTCGCACTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03942 -208 4.9 TTTTGTGATCATCATCACTAAA
-164 5.2 TCATGTGATCCAAATCACATAA
-115 3.4 TTCAGTGCCAGATTTCGCACTA
Enterobacter sp. 638 Ent638_0136 -224 3.4 TATTTTTTTCATACTCTCATTT
-205 4.8 TTTTGTGATGGCGATCACCTCA
-161 5.1 TTGCGTGATGCAGATCACACAA
Erwinia amylovora ATCC 49946 EAM_3416 -229 3.3 CATTGCGAATATCTTTACACTT
-210 3.9 CTTCGTGACTCATGTCACTAAA
-166 4.8 TTAAGTGACCCGCATCACACTT
-95 3.2 CGTTTTGATCGTGATCCCTCAA
-34 3.5 ACATGAGATTTGCATCATTAAT
Yersinia pestis KIM y4087 -223 4.6 AGATGTGATCTTAATCAACAAA
-179 4.5 TTGTGTGACTTTCGTCACGAAA
Serratia proteamaculans 568 Spro_0072 -195 5.2 AAATGTGATGTATATCACTATA
-151 4.5 GTTGGTGATCTGCATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0087 -230 5.1 TTTTGTGAAGTAAATCACCTAT
-186 4.5 TTGTGTGATTTTTGTCACGTTG
Position: -57
Score: 4.1
Sequence: ATTTGTGTGCTGAATCGCGTTA
Locus tag: YPZ3_3512
YPZ3_3512 -57 4.1 ATTTGTGTGCTGAATCGCGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yidA
Ortholog function: Phosphatase YidA
Yersinia pestis KIM y4109 -57 4.1 ATTTGTGTGCTGAATCGCGTTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4428 -228 3.8 TTACGTTATACCCGTCATACTT
Position: -263
Score: 5.4
Sequence: TTATGTGATGTATTTCACGTTT
Locus tag: YPZ3_3541
YPZ3_3541 -263 5.4 TTATGTGATGTATTTCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpI
Ortholog function: ATP synthase subunit I
Escherichia coli str. K-12 substr. MG1655 b3739 -263 4.8 ATATGTGATCTGAAGCACGCTT
Salmonella typhimurium LT2 STM3872 -262 4.6 ATGTGTGATCTGGTGCACGCTT
-211 4.1 TTTTGTACGATCGTTCACACTT
Citrobacter koseri ATCC BAA-895 CKO_00079 -262 4.7 ATATGTGATCCGAAGCACGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04144 -262 4.7 TTATGTGATCTGATGCACGCTT
Enterobacter sp. 638 Ent638_4125 -261 4.8 TTTTGTGATCTCGTGCACGCTT
Erwinia amylovora ATCC 49946 EAM_3481 -264 4.4 ATTTGTGATCGTGGACACGCTT
Yersinia pestis KIM y4142 -263 5.4 TTATGTGATGTATTTCACGTTT
Serratia proteamaculans 568 Spro_0001 -265 4.4 TATTGTGAGCAACTACACGTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4519 -254 5 TTATGTGAGTCACATCACAGAT
Edwardsiella tarda EIB202 ETAE_3526 -297 3.7 AATCGTGAAAATATTTAAATTA
Proteus mirabilis HI4320 PMI3057 -259 5 TTGTGTGTTCTAGATCACATTA
Photorhabdus luminescens subsp. laumondii TTO1 plu0047 -265 5.7 TTATGTGATTTAAATCACATTT
© 2009-2020 RegPrecise