Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of LfaR regulog to Pectobacterium carotovorum WPP14

Reference regulog properties
Source regulog: LfaR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Sugar utilization
Effector:
Phylum: Proteobacteria/Gamma
Propagated regulon:
Target genome Pectobacterium carotovorum WPP14
Orthologous TF(s) null
Regulated genes 2
Built upon 23 sites [see more]
Predicted regulatory interactions in Pectobacterium carotovorum WPP14
Locus tag Position Score Sequence
Position: -119
Score: 5.3
Sequence: TTGAAAACATTTTCAT
Locus tag: null
null -119 5.3 TTGAAAACATTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lfaR
Ortholog function: Transcriptional regulator for sugar utilization, LacI family
Citrobacter koseri ATCC BAA-895 CKO_02295 -23 6.2 ATGAAAATTTTTTCAT
Enterobacter sp. 638 Ent638_1314 -41 5.6 ATGAAAATTTTTGCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1966 -241 4.7 ATCAGAACATTTTCAT
-119 5.3 TTGAAAACATTTTCAT
-41 5.2 ATGAAAACTTTGTCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00854 -118 5.3 ATGCAAGTTTTTTCAT
-41 5.9 ATGAAAATTCTTTCAT
Serratia proteamaculans 568 Spro_3600 -118 5.2 TTGCAAAAATTTTCAT
-41 5.7 GTGAAAATATTTTCAT
Yersinia pestis KIM y3231 -118 5 TTGAAAGAATTCTCAT
-41 6.2 ATGAAAATTTTTTCAT
Position: -217
Score: 5.6
Sequence: ATGAAAATGTTTTCAA
Locus tag: null
null -217 5.6 ATGAAAATGTTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lfaT
Ortholog function: Hexuronate-like transporter
Citrobacter koseri ATCC BAA-895 CKO_02296 -267 6.4 ATGAAAAAATTTTCAT
-190 4.8 ATGAGAAAACTTGCAC
Enterobacter sp. 638 Ent638_1313 -265 5.8 ATGCAAAAATTTTCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1967 -295 5.3 ATGACAAAGTTTTCAT
-217 5.6 ATGAAAATGTTTTCAA
-95 4.6 ATGAAAATGTTCTGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00853 -273 6.2 ATGAAAGAATTTTCAT
-196 5.6 ATGAAAAAACTTGCAT
Serratia proteamaculans 568 Spro_3599 -340 6.2 ATGAAAATATTTTCAC
-263 5.4 ATGAAAATTTTTGCAA
Yersinia pestis KIM y3232 -368 6.4 ATGAAAAAATTTTCAT
-291 5.1 ATGAGAATTCTTTCAA