Propagation of Fur regulog to Yersinia pestis CA88-4125
| Source regulog: | Fur - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor (activator) |
| Biological process: | Iron homeostasis |
| Effector: | Iron ion, (Fe2+) |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Yersinia pestis CA88-4125 |
| Orthologous TF(s) | YPE_0627 |
| Regulated genes | 39 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -72
Score: 4.7 Sequence: GATAATTATTCTCATTTAA
Locus tag: YPE_0297
|
||||
| YPE_0297 | -72 | 4.7 | GATAATTATTCTCATTTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mntH | ||||
| Ortholog function: Mn2+/Fe2+ transporter, NRAMP family | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2392 | -68 | 4.7 | GAATTTGATAATCATTCTC |
| -62 | 4.2 | GATAATCATTCTCGTTTGG | ||
| Salmonella typhimurium LT2 | STM2408 | -68 | 4.5 | GCACTTGATAATCATTATC |
| -62 | 4.8 | GATAATCATTATCAATAAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00404 | -50 | 4.3 | GCACTTGATAATCATTCTC |
| -44 | 4.5 | GATAATCATTCTCAATAAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02743 | -68 | 4.3 | GAACTTGATAATCATTCGC |
| -62 | 4.3 | GATAATCATTCGCATTTTG | ||
| Enterobacter sp. 638 | Ent638_2926 | -67 | 4.8 | GATCTTGATAATCATTCTC |
| -61 | 4.8 | GATAATCATTCTCATTTTG | ||
| Yersinia pestis KIM | y1500 | -78 | 4 | GCGCTTGATAATTATTCTC |
| -72 | 4.6 | GATAATTATTCTCATTTAA | ||
| Serratia proteamaculans 568 | Spro_3415 | -66 | 4.3 | GCACTTGATAATTATTATC |
| -60 | 5.2 | GATAATTATTATCATTTAC | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0843 | -63 | 4.5 | GCACTTGATAATCATTATC |
| -57 | 5.2 | GATAATCATTATCATTTTT | ||
| Edwardsiella tarda EIB202 | ETAE_1142 | -134 | 4.5 | GCAGTTGATAATCATTATC |
|
Position: -108
Score: 5.1 Sequence: AACAATGATAATCATTTTT
Position: -102
Score: 4.9 Sequence: GATAATCATTTTTATTACC
Locus tag: YPE_0320
|
||||
| YPE_0320 | -108 | 5.1 | AACAATGATAATCATTTTT | |
| -102 | 4.9 | GATAATCATTTTTATTACC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sfuA | ||||
| Ortholog function: iron(III) ABC transporter, periplasmic protein | ||||
| Yersinia pestis KIM | y1526 | -108 | 4.8 | AACAATGATAATCATTTTT |
| -102 | 4.7 | GATAATCATTTTTATTACC | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3137 | -169 | 4.2 | CGAAATAATAATAACTATC |
| -163 | 4.7 | AATAATAACTATCATTATT | ||
| -157 | 4.4 | AACTATCATTATTATTATC | ||
|
Position: -45
Score: 4.2 Sequence: GCTAATGGTATTGATAATC
Position: -39
Score: 5.4 Sequence: GGTATTGATAATCATTTTC
Position: -33
Score: 4.9 Sequence: GATAATCATTTTCATTTGT
Locus tag: YPE_0820
|
||||
| YPE_0820 | -45 | 4.2 | GCTAATGGTATTGATAATC | |
| -39 | 5.4 | GGTATTGATAATCATTTTC | ||
| -33 | 4.9 | GATAATCATTTTCATTTGT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sitA | ||||
| Ortholog function: iron ABC transporter, periplasmic substrate-binding protein | ||||
| Salmonella typhimurium LT2 | STM2861 | -99 | 4.5 | GCAAATAAGAATTATTTTC |
| -93 | 4.2 | AAGAATTATTTTCATTTAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04090 | -84 | 4.5 | GTAAATAAGAATTATTTTC |
| -78 | 4.2 | AAGAATTATTTTCATTTAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00940 | -111 | 4.1 | GATAAAGATAATTTTTCTC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03078 | -99 | 4.5 | GCAAATAAGAATTATTTTC |
| -93 | 4.2 | AAGAATTATTTTCATTTAT | ||
| Enterobacter sp. 638 | Ent638_1111 | -98 | 4.9 | TTTAATGATAATTATTTTC |
| -92 | 4.5 | GATAATTATTTTCATTTAA | ||
| Yersinia pestis KIM | y1897 | -39 | 5.2 | GGTATTGATAATCATTTTC |
| -33 | 4.7 | GATAATCATTTTCATTTGT | ||
| Serratia proteamaculans 568 | Spro_2133 | -41 | 5.4 | GATATTGATAATCATTTTC |
| -35 | 4.6 | GATAATCATTTTCATTTGA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2392 | -53 | 5.1 | GATATTGATAATTATTCTC |
| Proteus mirabilis HI4320 | PMI1027 | -63 | 4.2 | TGAAATGATATTGATAATC |
| -57 | 5.5 | GATATTGATAATCATTATC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2672 | -49 | 5.2 | GATATTGATAATCGTTATC |
| -43 | 4.5 | GATAATCGTTATCATATAC | ||
|
Position: -156
Score: 4.6 Sequence: TGAAGTGATAATTATTATC
Position: -150
Score: 4.9 Sequence: GATAATTATTATCACTACC
Locus tag: YPE_0856
|
||||
| YPE_0856 | -156 | 4.6 | TGAAGTGATAATTATTATC | |
| -150 | 4.9 | GATAATTATTATCACTACC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sufA | ||||
| Ortholog function: scaffold protein for iron-sulfur cluster assembly | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1684 | -65 | 4.4 | TGAACTGATAATCATTATC |
| -59 | 5.1 | GATAATCATTATCACTAAC | ||
| Salmonella typhimurium LT2 | STM1369 | -66 | 4.7 | TGAAGTGATAATCATTATC |
| -60 | 5.1 | GATAATCATTATCACTAAC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_01717 | -66 | 4.7 | TGAAGTGATAATCATTATC |
| -60 | 5.1 | GATAATCATTATCACTAAC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02141 | -66 | 4.7 | TGAAGTGATAATCATTATC |
| -60 | 5.1 | GATAATCATTATCACTAAC | ||
| Enterobacter sp. 638 | Ent638_1760 | -67 | 4.4 | TGAAGTGATAATCGTTATC |
| -61 | 4.7 | GATAATCGTTATCACTAAC | ||
| Yersinia pestis KIM | y1934 | -129 | 4.5 | TGAAGTGATAATTATTATC |
| -123 | 4.8 | GATAATTATTATCACTACC | ||
| Serratia proteamaculans 568 | Spro_2179 | -77 | 4.4 | TGAAGTGATAATCGTTATC |
| -71 | 4.7 | GATAATCGTTATCACTAAC | ||
| Proteus mirabilis HI4320 | PMI1416 | -66 | 4.4 | GATAAGGGTTATCATTACC |
| -60 | 4 | GGTTATCATTACCATTAGA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2622 | -87 | 4.4 | GATAAAGGTTATCATTACC |
| -81 | 4.3 | GGTTATCATTACCATTATA | ||
|
Position: -339
Score: 5.2 Sequence: GATAATGACAATCATTCTC
Locus tag: YPE_1078
|
||||
| YPE_1078 | -339 | 5.2 | GATAATGACAATCATTCTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhE | ||||
| Ortholog function: iron-containing aldehyde-alcohol dehydrogenase | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02199 | -332 | 4 | TTTAATGCTAATCGTTTTT |
| -326 | 3.2 | GCTAATCGTTTTTTTAATT | ||
| Yersinia pestis KIM | y2023 | -339 | 5 | GATAATGACAATCATTCTC |
| -333 | 3.7 | GAcAATcATtcTCAaaAaa | ||
| Serratia proteamaculans 568 | Spro_2704 | -330 | 3.9 | GTTATCAAGAATGATTCTC |
| -324 | 4.2 | AAGAATGATTCTCAAAAAC | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2326 | -368 | 4.5 | CCTAATGATATTGATTATC |
| -362 | 5.2 | GATATTGATTATCAATATC | ||
| Edwardsiella tarda EIB202 | ETAE_1508 | -317 | 4 | aAagATGAgAtTCATTcTC |
| -311 | 4.3 | GAgAtTcATtcTCATTAaa | ||
| Proteus mirabilis HI4320 | PMI1486 | -300 | 4.5 | GTAATTAATTATCATTACC |
| -294 | 4 | AATTATCATTACCATTTAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2496 | -191 | 3.9 | ccaAtcaATAATaATTATC |
| -185 | 4.4 | AATAATAATTATCACTGAC | ||
|
Position: -41
Score: 4.7 Sequence: GTTAATAAATCTCATTATT
Locus tag: YPE_1314
|
||||
| YPE_1314 | -41 | 4.7 | GTTAATAAATCTCATTATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yijD1 | ||||
| Ortholog function: putative iron permease FTR1 | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02057 | -98 | 5.3 | TATAATGATAATAATTATC |
| -92 | 5 | GATAATAATTATCATTTGT | ||
| Yersinia pestis KIM | y2370 | -47 | 4.1 | GTTAATGTTAATAAATCTC |
| -41 | 4.5 | GTTAATAAATCTCATTATT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1510 | -41 | 4.7 | GATAATAAGAATAAATATC |
| -35 | 4.2 | AAGAATAAATATCATTTGT | ||
|
Position: -95
Score: 5 Sequence: GATAATGGTTATTATTCAC
Locus tag: YPE_1343
|
||||
| YPE_1343 | -95 | 5 | GATAATGGTTATTATTCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybtP | ||||
| Ortholog function: yersiniabactin-iron ABC transporter, ATPase/permease components | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01250 | -191 | 4.4 | GTTATTGATAATGGTTATT |
| -185 | 4.7 | GATAATGGTTATTATTCAC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00913 | -191 | 4.4 | GTTATTGATAATGGTTATT |
| -185 | 4.7 | GATAATGGTTATTATTCAC | ||
| Yersinia pestis KIM | y2397 | -101 | 4.4 | GTTATTGATAATGGTTATT |
| -95 | 4.7 | GATAATGGTTATTATTCAC | ||
|
Position: -90
Score: 5 Sequence: GTGAATAATAACCATTATC
Position: -84
Score: 4.8 Sequence: AATAACCATTATCAATAAC
Locus tag: YPE_1344
|
||||
| YPE_1344 | -90 | 5 | GTGAATAATAACCATTATC | |
| -84 | 4.8 | AATAACCATTATCAATAAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybtA | ||||
| Ortholog function: AraC-type transcriptional regulator for yersiniabactin uptake and biosynthetic genes | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00912 | -90 | 4.7 | GTGAATAATAACCATTATC |
| -84 | 4.6 | AATAACCATTATCAATAAC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_01249 | -90 | 4.7 | GTGAATAATAACCATTATC |
| -84 | 4.6 | AATAACCATTATCAATAAC | ||
| Yersinia pestis KIM | y2398 | -90 | 4.7 | GTGAATAATAACCATTATC |
| -84 | 4.6 | AATAACCATTATCAATAAC | ||
|
Position: -63
Score: 5.4 Sequence: GTTAATAATTATTATTATC
Locus tag: YPE_1345
|
||||
| YPE_1345 | -63 | 5.4 | GTTAATAATTATTATTATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: irp2 | ||||
| Ortholog function: non-ribosomal peptide synthase (siderophore synthase) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00911 | -63 | 4.9 | GTTAATAATTATTATTCTC |
| Yersinia pestis KIM | y2399 | -63 | 5.1 | GTTAATAATTATTATTATC |
|
Position: -74
Score: 4.8 Sequence: AGAAATAGTTATCATTTTC
Locus tag: YPE_1350
|
||||
| YPE_1350 | -74 | 4.8 | AGAAATAGTTATCATTTTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fyuA | ||||
| Ortholog function: TonB-dependent siderophore receptor | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00905 | -74 | 4.6 | AGAAATAGTTATCATTTTC |
| Citrobacter koseri ATCC BAA-895 | CKO_01243 | -74 | 4.6 | AGAAATAGTTATCATTTTC |
| Yersinia pestis KIM | y2404 | -74 | 4.6 | AGAAATAGTTATCATTTTC |
| Proteus mirabilis HI4320 | PMI2596 | -64 | 4.2 | GCAAATGATATTAATTCGC |
| -58 | 4.4 | GATATTAATTCGCATTAAC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2316 | -160 | 5.1 | ATTAATGAGAATCATTATC |
| -154 | 4.6 | GAGAATCATTATCAATAGT | ||
|
Position: -93
Score: 4.4 Sequence: CAGAATGATAATCACAATC
Position: -87
Score: 4.3 Sequence: GATAATCACAATCGTTTTA
Locus tag: YPE_1407
|
||||
| YPE_1407 | -93 | 4.4 | CAGAATGATAATCACAATC | |
| -87 | 4.3 | GATAATCACAATCGTTTTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yijD | ||||
| Ortholog function: iron permease FTR1 | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01045 | -76 | 5 | TGTAATGATAATCACTATC |
| -70 | 4.2 | GATAATCACTATCATAAAT | ||
| Enterobacter sp. 638 | Ent638_1545 | -76 | 4.9 | CGTAATGATAATCACTATC |
| Erwinia amylovora ATCC 49946 | EAM_2059 | -80 | 4.6 | GATAATGATAATCCCTATC |
| Yersinia pestis KIM | y2452 | -84 | 4.4 | CAGAATGATAATCACAATC |
| -78 | 4.3 | GATAATCACAATCGTTTTA | ||
| Serratia proteamaculans 568 | Spro_2929 | -109 | 4.8 | CAGAATGATAATCACTATC |
|
Position: -191
Score: 3.7 Sequence: GTGGATGACTATCATTAAA
Position: -178
Score: 4 Sequence: ATTAAACAGACTCATTCTC
Position: -126
Score: 4.2 Sequence: ACCAATAGGAATCATTATC
Position: -120
Score: 4.1 Sequence: AGGAATCATTATCTTTAGT
Position: -93
Score: 4.5 Sequence: AATAATGTGAATGATTATC
Position: -87
Score: 4.2 Sequence: GTGAATGATTATCATGATG
Position: -70
Score: 3.4 Sequence: TGCTTTGGTATTTATTTTC
Position: -64
Score: 4.2 Sequence: GGTATTTATTTTCATTTAA
Locus tag: YPE_1480
|
||||
| YPE_1480 | -191 | 3.7 | GTGGATGACTATCATTAAA | |
| -178 | 4 | ATTAAACAGACTCATTCTC | ||
| -126 | 4.2 | ACCAATAGGAATCATTATC | ||
| -120 | 4.1 | AGGAATCATTATCTTTAGT | ||
| -93 | 4.5 | AATAATGTGAATGATTATC | ||
| -87 | 4.2 | GTGAATGATTATCATGATG | ||
| -70 | 3.4 | TGCTTTGGTATTTATTTTC | ||
| -64 | 4.2 | GGTATTTATTTTCATTTAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ftnA | ||||
| Ortholog function: ferritin | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1905 | -127 | 3.4 | GgTAATGcgttTtATTccC |
| -121 | 3 | GcgttTtATtccCATTcgt | ||
| Salmonella typhimurium LT2 | STM1935 | -100 | 4 | AATAATTAAATTTAATATT |
| Citrobacter koseri ATCC BAA-895 | CKO_01042 | -97 | 4.3 | AATAATTAAATTTATTATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02402 | -161 | 4 | ATAAATTAAAAGCATTCTC |
| -155 | 3.8 | TAAAAGCATTCTCATTTAT | ||
| Enterobacter sp. 638 | Ent638_2486 | -103 | 3.7 | TATTTTAATAAATAATATC |
| -97 | 3.6 | AATAAATAATATCTTTATT | ||
| Erwinia amylovora ATCC 49946 | EAM_2940 | -131 | 4.4 | TGGAATGATTATCAATTAC |
| Yersinia pestis KIM | y2524 | -93 | 4.4 | AATAATGTGAATGATTATC |
| -87 | 4.1 | GTGAATGATTATCATGATG | ||
| Serratia proteamaculans 568 | Spro_1942 | -174 | 4.5 | GAAAATAGTTATCATAATT |
| -168 | 4 | AGTTATCATAATTATTTAA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2473 | -158 | 4.6 | TTAAATGATAATGAATATC |
| -152 | 4.8 | GATAATGAATATCAATAGC | ||
| Proteus mirabilis HI4320 | PMI1007 | -184 | 4.7 | GTTAATGATAATCAATTCC |
| -178 | 4.1 | GATAATCAATTCCATTAAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2689 | -147 | 4.4 | TTAAATGAGATTCATTTTC |
| -141 | 4.4 | GAGATTCATTTTCATTTTT | ||
|
Position: -67
Score: 5 Sequence: GCTATTGATAATCACTATC
Position: -61
Score: 4.6 Sequence: GATAATCACTATCATTCTG
Locus tag: YPE_1675
|
||||
| YPE_1675 | -67 | 5 | GCTATTGATAATCACTATC | |
| -61 | 4.6 | GATAATCACTATCATTCTG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fhuF | ||||
| Ortholog function: ferric iron reductase involved in ferric hydroximate transport | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4367 | -122 | 5.1 | GATAATGATAACCAATATC |
| -99 | 4.5 | GATAATTTTTATCATTTGC | ||
| -34 | 4 | AGCAATCATTATCATTTAG | ||
| Salmonella typhimurium LT2 | STM4550 | -238 | 4 | GGAATTGATAATGATAACC |
| -232 | 5.1 | GATAATGATAACCAATATC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03429 | -234 | 4.8 | GATAATGATAACCAATAGC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04821 | -44 | 4.5 | AATATCAGTAATCATTATC |
| -38 | 4.4 | AGTAATCATTATCATTTAG | ||
| Enterobacter sp. 638 | Ent638_0527 | -237 | 5.1 | GATAATGATAACCAATATC |
| Yersinia pestis KIM | y2642 | -67 | 4.9 | GCTATTGATAATCACTATC |
| -61 | 4.4 | GATAATCACTATCATTCTG | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4627 | -100 | 4.3 | GACAATGATAATAATAATA |
| -94 | 5.3 | GATAATAATAATAATTATC | ||
| -88 | 4.9 | AATAATAATTATCATAATT | ||
| -82 | 4.1 | AATTATCATAATTATATTT | ||
|
Position: -205
Score: 4.9 Sequence: ATAAATAATAATCATTTGC
Locus tag: YPE_1685
|
||||
| YPE_1685 | -205 | 4.9 | ATAAATAATAATCATTTGC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: plu4621 | ||||
| Ortholog function: unknown | ||||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4621 | -196 | 4.6 | GTTAATGATAATAATTTGT |
| -190 | 4.2 | GATAATAATTTGTATTAAT | ||
|
Position: -69
Score: 4.4 Sequence: CTTATTGATAAGTATTATC
Position: -63
Score: 4.7 Sequence: GATAAGTATTATCATTTGC
Locus tag: YPE_1948
|
||||
| YPE_1948 | -69 | 4.4 | CTTATTGATAAGTATTATC | |
| -63 | 4.7 | GATAAGTATTATCATTTGC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yiuA | ||||
| Ortholog function: siderophore ABC transporter, substrate binding periplasmic protein | ||||
| Yersinia pestis KIM | y2875 | -45 | 4.3 | CTTATTGATAAGTATTATC |
| -39 | 4.5 | GATAAGTATTATCATTTGC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2853 | -78 | 4.3 | CATATTGATAAGTATTCTC |
| -72 | 4 | GATAAGTATTCTCATTTGT | ||
|
Position: -187
Score: 5.4 Sequence: TATAATGATAATAATTATC
Position: -181
Score: 4.7 Sequence: GATAATAATTATCATTGAA
Locus tag: YPE_2117
|
||||
| YPE_2117 | -187 | 5.4 | TATAATGATAATAATTATC | |
| -181 | 4.7 | GATAATAATTATCATTGAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gpmA | ||||
| Ortholog function: phosphoglyceromutase 1 | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0755 | -47 | 5 | TATAATGAGAATTATTATC |
| -41 | 4.7 | GAGAATTATTATCATTAAA | ||
| Salmonella typhimurium LT2 | STM0772 | -47 | 5 | TATAATGAGAATTATTATC |
| -41 | 4.5 | GAGAATTATTATCATTACA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02381 | -46 | 5 | TATAATGAGAATTATTATC |
| -40 | 4.5 | GAGAATTATTATCATTCAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00768 | -96 | 4.6 | TATAATGAGAATAGTTATC |
| Enterobacter sp. 638 | Ent638_1246 | -164 | 4.7 | TATAATGAGAATTGTTATC |
| -158 | 4.1 | GAGAATTGTTATCATTCAA | ||
| Yersinia pestis KIM | y3048 | -103 | 5.3 | TATAATGATAATAATTATC |
| -97 | 4.6 | GATAATAATTATCATTGAA | ||
| Serratia proteamaculans 568 | Spro_1288 | -51 | 4.9 | TATAATGATTTTCGTTATC |
| Edwardsiella tarda EIB202 | ETAE_2569 | -49 | 4.6 | CATGATGATAATAATTATC |
| -43 | 5.3 | GATAATAATTATCATTATA | ||
|
Position: -187
Score: 5 Sequence: GAAAATGATAATCGTTTGC
Locus tag: YPE_2255
|
||||
| YPE_2255 | -187 | 5 | GAAAATGATAATCGTTTGC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: y3404 | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Yersinia pestis KIM | y3404 | -187 | 4.9 | GAAAATGATAATCGTTTGC |
|
Position: -95
Score: 4.9 Sequence: AATAGTGGTTATCATTATC
Locus tag: YPE_2277
|
||||
| YPE_2277 | -95 | 4.9 | AATAGTGGTTATCATTATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Spro_0923 | ||||
| Ortholog function: major facilitator superfamily MFS_1 | ||||
| Serratia proteamaculans 568 | Spro_0923 | -93 | 4.3 | AATAATATTTATTGTTATC |
|
Position: -179
Score: 4.3 Sequence: ACAAACGATTTTGATTATC
Position: -173
Score: 4.9 Sequence: GATTTTGATTATCATTCGC
Locus tag: YPE_2313
|
||||
| YPE_2313 | -179 | 4.3 | ACAAACGATTTTGATTATC | |
| -173 | 4.9 | GATTTTGATTATCATTCGC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Spro_1015 | ||||
| Ortholog function: iron(III) ABC transporter, periplasmic protein | ||||
| Yersinia pestis KIM | y3342 | -41 | 4.2 | ACAAACGATTTTGATTATC |
| -35 | 4.6 | GATTTTGATTATCATTCGC | ||
| Serratia proteamaculans 568 | Spro_1015 | -52 | 4.3 | GCTAATGAGAGTGATTATC |
|
Position: -95
Score: 4.9 Sequence: ACTAATGATAATTACTATC
Locus tag: YPE_2586
|
||||
| YPE_2586 | -95 | 4.9 | ACTAATGATAATTACTATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: exbB | ||||
| Ortholog function: TonB-dependent siderophore transporter component ExbB | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3006 | -82 | 4.1 | AGTAATGAGAACGACTATC |
| Salmonella typhimurium LT2 | STM3159 | -82 | 4.1 | AGTAATGAGAACGACTATC |
| Citrobacter koseri ATCC BAA-895 | CKO_04401 | -97 | 4.1 | AGTAATGAGAACGACTATC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03426 | -97 | 4.3 | ACTAATGAGAACCACTATC |
| Enterobacter sp. 638 | Ent638_3417 | -97 | 4.3 | ACTAATGAGAACCACTATC |
| Yersinia pestis KIM | y3495 | -71 | 4.8 | ACTAATGATAATTACTATC |
| Serratia proteamaculans 568 | Spro_4211 | -94 | 4.4 | AATAATGAGAACTACTATC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0358 | -206 | 4.3 | AATAATGAGAACGACTATC |
| Proteus mirabilis HI4320 | PMI0029 | -170 | 4.8 | AGTAATGATAATTACTATC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3941 | -98 | 5.1 | AATAATGATAATTACTATC |
|
Position: -91
Score: 5 Sequence: GATATTGGTTATGATTATC
Position: -85
Score: 5.4 Sequence: GGTTATGATTATCATTATC
Locus tag: YPE_2844
|
||||
| YPE_2844 | -91 | 5 | GATATTGGTTATGATTATC | |
| -85 | 5.4 | GGTTATGATTATCATTATC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yjjZ | ||||
| Ortholog function: putative membrane protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4567 | -60 | 4.4 | GCAAATGATAAAAATTATC |
| -37 | 5.2 | GATATTGGTTATCATTATC | ||
| Salmonella typhimurium LT2 | STM4552 | -37 | 5.2 | GATATTGGTTATCATTATC |
| -31 | 4.2 | GGTTATCATTATCAATTCC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03427 | 2 | 4.9 | GCTATTGGTTATCATTATC |
| 8 | 4.1 | GGTTATCATTATCGGTATC | ||
| Enterobacter sp. 638 | Ent638_0529 | -37 | 5.2 | GATATTGGTTATCATTATC |
| -31 | 4 | GGTTATCATTATCATATTG | ||
| Erwinia amylovora ATCC 49946 | EAM_0565 | -70 | 4.3 | CAAAGTGATAATGATTAAC |
| -64 | 4.3 | GATAATGATTAACATATGC | ||
| -47 | 4.9 | GCTATTGGTAATCATTATC | ||
| -41 | 4.8 | GGTAATCATTATCATTTAT | ||
| Yersinia pestis KIM | y3754 | -4 | 4.9 | GATATTGGTTATGATTATC |
| 2 | 5.2 | GGTTATGATTATCATTATC | ||
| Serratia proteamaculans 568 | Spro_0646 | -39 | 4.7 | GATATTAGTTCTCATTATC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0738 | -89 | 5 | GATATTAGTTATCATTATC |
| -83 | 4.5 | AGTTATCATTATCATTTTT | ||
| Proteus mirabilis HI4320 | PMI2497 | -27 | 5.3 | AATAATGAAAATCATTATC |
| -21 | 5.2 | GAAAATCATTATCATTAAC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4253 | -92 | 5.2 | GATATTGGTAATCATTATC |
| -86 | 4.7 | GGTAATCATTATCATTTGT | ||
|
Position: -275
Score: 5.1 Sequence: GATAATGATAATCATAACC
Position: -269
Score: 5.1 Sequence: GATAATCATAACCAATATC
Locus tag: YPE_2845
|
||||
| YPE_2845 | -275 | 5.1 | GATAATGATAATCATAACC | |
| -269 | 5.1 | GATAATCATAACCAATATC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hmsT | ||||
| Ortholog function: diguanylate cyclase, involved in hemin storage | ||||
| Salmonella typhimurium LT2 | STM4551 | -238 | 4 | GGAATTGATAATGATAACC |
| -232 | 5.1 | GATAATGATAACCAATATC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03428 | -234 | 4.8 | GATAATGATAACCAATAGC |
| Enterobacter sp. 638 | Ent638_0528 | -237 | 5.1 | GATAATGATAACCAATATC |
| Erwinia amylovora ATCC 49946 | EAM_0564 | -224 | 4.5 | ATAAATGATAATGATTACC |
| -218 | 4.8 | GATAATGATTACCAATAGC | ||
| -201 | 4.3 | GCATATGTTAATCATTATC | ||
| -195 | 4.4 | GTTAATCATTATCACTTTG | ||
| Yersinia pestis KIM | y3756 | -275 | 5 | gataatgataatcataacc |
| -269 | 4.9 | gataatcataaccaatatc | ||
| Serratia proteamaculans 568 | Spro_0645 | -243 | 4.6 | GATAATGAGAACTAATATC |
|
Position: -48
Score: 4.6 Sequence: GCTTATGATTATCATTTAA
Locus tag: YPE_2979
|
||||
| YPE_2979 | -48 | 4.6 | GCTTATGATTATCATTTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hemN1 | ||||
| Ortholog function: coproporphyrinogen III oxidase, iron utilization | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02656 | -45 | 4.2 | GCGAATGATAATGATGATC |
| -39 | 4.7 | GATAATGATGATCATTTAC | ||
| Yersinia pestis KIM | y0547 | -54 | 4.1 | TCGAATGCTTATGATTATC |
| -48 | 4.4 | GCTTATGATTATCATTTAA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3009 | -55 | 4.2 | CCAAATAAAAATAATTATC |
| -49 | 4.6 | AAAAATAATTATCATTTAA | ||
| Edwardsiella tarda EIB202 | ETAE_1793 | -59 | 4.4 | TCGAATGATAACTATTATC |
| -53 | 4.4 | GATAACTATTATCATTCAA | ||
|
Position: -58
Score: 4.1 Sequence: TGAAATAAAACTCATTCTT
Position: -52
Score: 4 Sequence: AAAACTCATTCTTATTTAC
Locus tag: YPE_3062
|
||||
| YPE_3062 | -58 | 4.1 | TGAAATAAAACTCATTCTT | |
| -52 | 4 | AAAACTCATTCTTATTTAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bfd | ||||
| Ortholog function: bacterioferritin-associated ferredoxin | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3337 | -51 | 3.9 | tgaAATaAgAActATTtTC |
| -45 | 3.9 | aAgAActATttTCATTtat | ||
| Salmonella typhimurium LT2 | STM3444 | -55 | 4.6 | TGTAATCATAACCATTCTC |
| -49 | 4.3 | CATAACCATTCTCATTTAC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04744 | -55 | 4.3 | TGTAATCATAACTATTCTC |
| -49 | 4.2 | CATAACTATTCTCATTTAC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03723 | -55 | 4.6 | TGTAATCATAACCATTCTC |
| -49 | 3.9 | cATAAccATtcTCATTtaa | ||
| Enterobacter sp. 638 | Ent638_3755 | -55 | 4.7 | TGTAATCATAATTATTCTC |
| -49 | 4.2 | CATAATTATTCTCACTTAC | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4034 | -132 | 3.9 | tgaAATaAaAATaATTcTt |
| -126 | 4.4 | AAAAATAATTCTTATTTAC | ||
| Proteus mirabilis HI4320 | PMI3252 | -57 | 4.2 | TGAAATAACAATGATTATC |
| -51 | 4.8 | AACAATGATTATCATTTAC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4729 | -59 | 4.4 | TGAAATGAGACTCATTATT |
| -53 | 3.6 | GAgAcTcATtATtATTtaa | ||
|
Position: -118
Score: 4.2 Sequence: GAGCATGAAAATAATTCTC
Position: -112
Score: 4.5 Sequence: GAAAATAATTCTCAGTATT
Locus tag: YPE_3137
|
||||
| YPE_3137 | -118 | 4.2 | GAGCATGAAAATAATTCTC | |
| -112 | 4.5 | GAAAATAATTCTCAGTATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoA | ||||
| Ortholog function: ferrous iron transport protein A | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3408 | -138 | 3.4 | GcTgATagaAAcCATTcTC |
| -132 | 4.5 | AGAAACCATTCTCATTATC | ||
| Salmonella typhimurium LT2 | STM3505 | -140 | 3.5 | GAagATagaAAcCATTcTC |
| -133 | 4.5 | AGAAACCATTCTCATTATC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04830 | -139 | 4.1 | GATGATAAAAACCATTCTC |
| -133 | 4.7 | AAAAACCATTCTCATTATC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03778 | -133 | 4.1 | GATGATAAAAACCATTCTC |
| -127 | 4.7 | AAAAACCATTCTCATTATC | ||
| Enterobacter sp. 638 | Ent638_3821 | -62 | 4.5 | AGAAACCATTCTCATTATC |
| Yersinia pestis KIM | y3912 | -118 | 4.1 | GAGCATGAAAATAATTCTC |
| -112 | 4.4 | GAAAATAATTCTCAGTATT | ||
| Serratia proteamaculans 568 | Spro_4628 | -155 | 4.3 | GAATACGATAATGATTCTC |
| -149 | 4.9 | GATAATGATTCTCACTATT | ||
| Edwardsiella tarda EIB202 | ETAE_3283 | -163 | 4.3 | GAAAACGATTATCAGTTTT |
| -157 | 4.1 | GATTATCAGTTTTATTATA | ||
| Proteus mirabilis HI4320 | PMI2920 | -138 | 4 | AAAGATGGTTATAATTCTC |
| -132 | 4.3 | GGTTATAATTCTCATTTGC | ||
| -59 | 4.8 | GTTAATAATTATCAGTATC | ||
| -53 | 4.6 | AATTATCAGTATCATTATT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0209 | -244 | 4 | AATGTTGGTTATTATTCTC |
| -238 | 4.2 | GGTTATTATTCTCATTTGC | ||
|
Position: -104
Score: 4.6 Sequence: AGGTTTGATAATCATTTTC
Position: -98
Score: 5.2 Sequence: GATAATCATTTTCAATATC
Locus tag: YPE_3336
|
||||
| YPE_3336 | -104 | 4.6 | AGGTTTGATAATCATTTTC | |
| -98 | 5.2 | GATAATCATTTTCAATATC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sodA | ||||
| Ortholog function: manganese/iron superoxide dismutase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3908 | -99 | 4.7 | GGCATTGATAATCATTTTC |
| -93 | 5 | GATAATCATTTTCAATATC | ||
| Salmonella typhimurium LT2 | STM4055 | -99 | 4.7 | GGCATTGATAATCATTTTC |
| -93 | 5 | GATAATCATTTTCAATATC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03093 | -88 | 4.3 | GGCATTGATAAGCATTTTC |
| -82 | 4.4 | GATAAGCATTTTCAATATC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04217 | -88 | 4.3 | GGCATTGATAAGCATTTTC |
| -82 | 4 | GATAAGCATTTTCAATACC | ||
| Enterobacter sp. 638 | Ent638_4063 | -100 | 4.7 | GGCATTGATAATCATTTTC |
| -94 | 5 | GATAATCATTTTCAATATC | ||
| Yersinia pestis KIM | y4080 | -104 | 4.4 | AGGTTTGATAATCATTTTC |
| -98 | 5 | GATAATCATTTTCAATATC | ||
| Serratia proteamaculans 568 | Spro_0081 | -105 | 4.7 | GGCATTGATAATCATTTTC |
| -99 | 5 | GATAATCATTTTCAATATC | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0092 | -105 | 4.9 | AATAATCATTTTCAATATC |
| Proteus mirabilis HI4320 | PMI3036 | -95 | 4.6 | GGATATGATAATGATTTTC |
| -89 | 5.2 | GATAATGATTTTCATTAAC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0075 | -102 | 4.3 | GGTATTGATAAGCATTTCC |
|
Position: -62
Score: 5 Sequence: GGTAATAAAAATCATTAGC
Position: -56
Score: 4.5 Sequence: AAAAATCATTAGCATTACT
Locus tag: YPE_3372
|
||||
| YPE_3372 | -62 | 5 | GGTAATAAAAATCATTAGC | |
| -56 | 4.5 | AAAAATCATTAGCATTACT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fatB | ||||
| Ortholog function: iron ABC transporter, substrate-binding protein | ||||
| Yersinia pestis KIM | y4043 | -26 | 4.8 | GGTAATAAAAATCATTAGC |
| -20 | 4.2 | AAAAATCATTAGCATTACT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2564 | -86 | 4.2 | GCGAATGATAATTAAATTC |
| -80 | 4.1 | GATAATTAAATTCTTTATT | ||
| Proteus mirabilis HI4320 | PMI2957 | -121 | 4.1 | GTGAATTAGTATCATTACT |
|
Position: -340
Score: 5.6 Sequence: GATTATGATAATCATTATC
Position: -334
Score: 5.2 Sequence: GATAATCATTATCAATAGC
Locus tag: YPE_3469
|
||||
| YPE_3469 | -340 | 5.6 | GATTATGATAATCATTATC | |
| -334 | 5.2 | GATAATCATTATCAATAGC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hasR | ||||
| Ortholog function: TonB-dependent heme receptor | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1538 | -102 | 5 | GGTAATGATTTTTATTATC |
| -96 | 4.8 | GATTTTTATTATCATTTTC | ||
| -90 | 4.1 | TATTATCATTTTCATTAAG | ||
|
Position: -157
Score: 4.6 Sequence: CGTTTTAATAATCATTATC
Position: -151
Score: 4.9 Sequence: AATAATCATTATCGTTACC
Locus tag: YPE_4024
|
||||
| YPE_4024 | -157 | 4.6 | CGTTTTAATAATCATTATC | |
| -151 | 4.9 | AATAATCATTATCGTTACC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fhuC | ||||
| Ortholog function: iron-hydroxamate transporter ATP-binding subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0151 | -57 | 4.4 | CTTTATAATAATCATTCTC |
| -51 | 4.5 | AATAATCATTCTCGTTTAC | ||
| Salmonella typhimurium LT2 | STM0192 | -56 | 4.8 | GGTTATAATAATAATTATC |
| -50 | 4.8 | AATAATAATTATCGTTTAC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03217 | -57 | 4 | GGTCATAAGAATAATTCTC |
| -51 | 4.3 | AAGAATAATTCTCGTTTAC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00166 | -56 | 4 | CGTCATAATAATAATTCTC |
| -50 | 4.5 | AATAATAATTCTCGTTTAC | ||
| Enterobacter sp. 638 | Ent638_0691 | -58 | 4.3 | GGTCATAATAATAATTCTC |
| -52 | 4.5 | AATAATAATTCTCGTTTAC | ||
| Yersinia pestis KIM | y0796 | -157 | 4.4 | CGTTTTAATAATCATTATC |
| -151 | 4.7 | AATAATCATTATCGTTACC | ||
| Serratia proteamaculans 568 | Spro_3978 | -60 | 4.7 | GCTTATAATAATTATTATC |
| -54 | 4.7 | AATAATTATTATCGTTTAC | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3312 | -123 | 4.3 | CTTTATCGTAATCATTATC |
| -117 | 4.5 | CGTAATCATTATCGTTCTC | ||