Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Candidatus Riesia pediculicola USDA

Reference regulog properties
Source regulog: Crp - Enterobacteriales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Candidatus Riesia pediculicola USDA
Orthologous TF(s) No orthologous TFs found
Regulated genes 31
Built upon 2301 sites [see more]
Predicted regulatory interactions in Candidatus Riesia pediculicola USDA
Locus tag Position Score Sequence
Position: -86
Score: 3.8
Sequence: TTATTTTATCAGAATAAAATAT
Locus tag: RIEPE_0073
RIEPE_0073 -86 3.8 TTATTTTATCAGAATAAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ubiG
Ortholog function: 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64)
Escherichia coli str. K-12 substr. MG1655 b2232 -236 3.8 AACAATGACCGACATCGCATAA
Citrobacter koseri ATCC BAA-895 CKO_00542 -249 3.8 AACAATGACCGACATCGCATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02641 -236 3.8 AACAATGACCGACATCGCATAA
Proteus mirabilis HI4320 PMI1733 -214 3.5 TGGTGTGATTTCTCTGGCAATG
-89 3.4 TTTCGCGATTCTCTTCGATTTA
Position: 17
Score: 3.6
Sequence: TAGTGTTAAATGGTTCAACGAA
Locus tag: RIEPE_0091
RIEPE_0091 17 3.6 TAGTGTTAAATGGTTCAACGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cspE
Ortholog function: cold shock protein E
Escherichia coli str. K-12 substr. MG1655 b0623 -114 4 TAACGCGACTTTTATCACTTTT
Salmonella typhimurium LT2 STM0629 -114 4.3 TAACGCGATATTTATCACTTTT
Citrobacter koseri ATCC BAA-895 CKO_02534 -21 4.3 TAACGCGATATTTATCACTTTT
Enterobacter sp. 638 Ent638_1159 -114 3.8 TAACGCGACTTTTGTCACTTTT
Erwinia amylovora ATCC 49946 EAM_1116 -113 3.6 AAAAACGATATTTATCACTTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1294 -113 3.9 TTTAGCGACTTTTATCACTTTT
Position: -310
Score: 3.1
Sequence: TTTTGTAATAAAGTAAAATTTA
Position: -293
Score: 3.6
Sequence: ATTTATGAAATACTTAAAGTAT
Position: -284
Score: 3.6
Sequence: ATACTTAAAGTATTTCAAAATA
Position: -142
Score: 3.3
Sequence: TTATTTGAAATATCCTAAAAAT
Position: -63
Score: 3.5
Sequence: TAAAGTTATCAATTTCAATCAA
Position: -20
Score: 3.4
Sequence: AAAAGTGAAGGAATTATCTTAT
Position: 3
Score: 3.3
Sequence: AGGAATGAATCAAATCAAAATA
Locus tag: RIEPE_0113
RIEPE_0113 -310 3.1 TTTTGTAATAAAGTAAAATTTA
-293 3.6 ATTTATGAAATACTTAAAGTAT
-284 3.6 ATACTTAAAGTATTTCAAAATA
-142 3.3 TTATTTGAAATATCCTAAAAAT
-63 3.5 TAAAGTTATCAATTTCAATCAA
-20 3.4 AAAAGTGAAGGAATTATCTTAT
3 3.3 AGGAATGAATCAAATCAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceE
Ortholog function: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Escherichia coli str. K-12 substr. MG1655 b0114 -156 3.7 AAACGTTATATATGTCAAGTTG
-131 3.8 AAATGTGCACAGTTTCATGATT
Salmonella typhimurium LT2 STM0152 -157 3.5 AAACATGATTTCTGTAAAATTG
-120 3.2 TTTACTGATTTCAATCAAAACC
-79 3 CTTATTAAGCTTTCTCACGAAA
-54 3.4 TAATGGGACAGGTTCCAGATAA
Citrobacter koseri ATCC BAA-895 CKO_03259 -180 3.2 ATTTGTGCATAGTTACATCTTT
-157 3.1 AAACGTTATTTCTGTAATCTTG
-148 3.3 TTCTGTAATCTTGTTAAAATGT
-120 3.2 TTTACTGATTTCAATCAAAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00118 -155 3.2 AAATGTTATTTCTGTAAGGTTG
-118 3.2 TTTACTGATTTCAATCAAAACC
Enterobacter sp. 638 Ent638_0660 -120 3.2 TTTACTGATTTCAATCAAAACC
-77 3.1 TATTGTATTTTCTGGCGAAAAT
-68 3 TTTAGCGATACGAATATGAAAT
Erwinia amylovora ATCC 49946 EAM_0747 -198 3.3 TAAAGCGATCGGATTTAACAAT
Yersinia pestis KIM y0767 -151 4.2 AAATGTGCTGGGTTTCATGATT
-139 3.3 TTTCATGATTTCGGTCAAGGTC
-74 3.4 TTTTGAAATTGGTATTACCAAT
Serratia proteamaculans 568 Spro_4011 -132 3.1 AAATGTGCGGGTAACCTGATTT
-56 3.4 TTTTGAAATTGGTATTACCAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3789 -120 3.7 ATTGGTGATTTAGCTCAAGGTC
-55 3.4 TTTTGAAATTGGTATTACCAAT
Edwardsiella tarda EIB202 ETAE_0659 -143 3.2 TTTCATGATTTACATCAATAGT
Proteus mirabilis HI4320 PMI2046 -218 3.1 TGTTTTTAATCTTTTCTAATAA
-199 4.4 TAATGCGATCTAGTTATCAAAT
-181 4.2 AAATTTGATGAATTTATCAAAT
-158 3 ATTTGTTAAAATTTGCAGGTTT
-138 3.9 TTTTATGATTTCGCTCAACAAC
-95 3.1 CTTTGTTACTTTATTATCCATT
-89 3.1 TACTTTATTATCCATTACATTA
Position: -169
Score: 3.8
Sequence: AATTTTGAATTTTATTAAACTA
Locus tag: RIEPE_0117
RIEPE_0117 -169 3.8 AATTTTGAATTTTATTAAACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpiA
Ortholog function: Ribose 5-phosphate isomerase A (EC 5.3.1.6)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03349 -82 3.9 TTGTGTGATCTGCATCGCAGGG
Enterobacter sp. 638 Ent638_3333 -47 3.8 TAATGTGACACCGGTCACAGGG
Yersinia pestis KIM y3302 -114 4.2 AACTGTGATCTCGCTAGAATTA
Edwardsiella tarda EIB202 ETAE_2950 -276 4 TTTTGTTATGTATAAAACGTTA
Proteus mirabilis HI4320 PMI2032 -96 3.8 TAAAATGTTGTGTCTCAAATTT
Position: -285
Score: 3.8
Sequence: TTAAGTAATTTAAATTAAAATT
Position: -4
Score: 3.7
Sequence: ATTTATGAACACAATAAAAAAA
Locus tag: RIEPE_0131
RIEPE_0131 -285 3.8 TTAAGTAATTTAAATTAAAATT
-4 3.7 ATTTATGAACACAATAAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydhD
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b1654 -132 3.6 ATATTTGAAATGCAACAAATAG
Enterobacter sp. 638 Ent638_1793 -186 3.6 TGAAGCGCTTTTGCTCACACTA
Erwinia amylovora ATCC 49946 EAM_1665 -145 3.9 AAATGTTATTTTGTTATCATCT
Proteus mirabilis HI4320 PMI1394 -292 3.6 TAATGTGCATTTATACACTTAT
Position: -144
Score: 3.5
Sequence: AAAATTGATTTTCATTATAGAT
Position: -88
Score: 4
Sequence: ATGTGTGATTGAATCCTCCTTT
Position: 29
Score: 3.6
Sequence: CACTCTGATTTTTTTAACACTT
Locus tag: RIEPE_0133
RIEPE_0133 -144 3.5 AAAATTGATTTTCATTATAGAT
-88 4 ATGTGTGATTGAATCCTCCTTT
29 3.6 CACTCTGATTTTTTTAACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lpp
Ortholog function: major outer membrane lipoprotein
Escherichia coli str. K-12 substr. MG1655 b1677 -56 3.6 TTGTGTAATACTTGTAACGCTA
Salmonella typhimurium LT2 STM1377 -56 3.6 TTGTGTAATACTTGTAACGCTA
Citrobacter koseri ATCC BAA-895 CKO_01710 -56 3.6 TTGTGTAATACTTGTAACGCTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02134 -56 3.6 TTGTGTAATACTTGTAACGCTA
Enterobacter sp. 638 Ent638_1767 -56 3.6 TTGTGTAATACTTGTAACGCTA
Erwinia amylovora ATCC 49946 EAM_1656 -56 3.6 TTGTGTAATACTTGTAACGCTA
Serratia proteamaculans 568 Spro_2186 -55 3.6 TTGTGTAATACTTGTAACGCTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1866 -56 3.6 TTGTGTAATACTTGTAACGCTA
Edwardsiella tarda EIB202 ETAE_1852 -55 3.6 TTGTGTAATACTTGTAACGCTA
Proteus mirabilis HI4320 PMI1409 -200 4.4 TTTTGTGAAATAACACGCATTT
Position: -63
Score: 3.8
Sequence: AACTATGATAGCAATAAAATTA
Locus tag: RIEPE_0167
RIEPE_0167 -63 3.8 AACTATGATAGCAATAAAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoB
Ortholog function: cytochrome o ubiquinol oxidase subunit I
Escherichia coli str. K-12 substr. MG1655 b0431 -245 3.8 ATAATTGTTTTATTTCACATTG
Erwinia amylovora ATCC 49946 EAM_0984 -134 4 AGTTGTGACAGCGTTTGCAAAA
Yersinia pestis KIM y1020 -137 4.5 ATCTGTGACCCCCTTAACATAA
Serratia proteamaculans 568 Spro_1089 -135 4.2 ATCTGTGACCCCCTTAACAGAA
Proteus mirabilis HI4320 PMI0107 -194 3.6 AAATTATAGTTAATTCACAATA
-147 3.6 TTAATTACTTGTGATCACATTA
-141 4.3 ACTTGTGATCACATTAACACAA
Position: -187
Score: 3.8
Sequence: TTATTTGATTATTTTAAAATTC
Locus tag: RIEPE_0181
RIEPE_0181 -187 3.8 TTATTTGATTATTTTAAAATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: dapE
Ortholog function: N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18)
Escherichia coli str. K-12 substr. MG1655 b2472 -246 3.8 GTATGTGATACACAGCAACATT
Salmonella typhimurium LT2 STM2483 -282 4 TTATGTGACTTACTGCAATATT
Citrobacter koseri ATCC BAA-895 CKO_00316 -276 4 TTATGTGACTTACTGCAATATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02805 -218 4 TAATGTGACGTAGAGCAACCTC
-179 4 TAATGTTAAAGCCCTCACATCA
Enterobacter sp. 638 Ent638_2967 -254 4 TTATGTGACCAATAGCAATATT
-77 3.6 ATATGTTATGTTTTGCCAAATA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1291 -138 3.7 TTCTGCAACGCAGTTCACAGTA
Position: -155
Score: 3.4
Sequence: AATTTCGATCACATTCAATCTT
Position: -121
Score: 3.3
Sequence: AAATTTGAACTAGTGCCAAATG
Position: -64
Score: 3.7
Sequence: ATTTTTAATACTCATCAAATCA
Position: -7
Score: 3.3
Sequence: TATTGAGATGAACAAAAGAATA
Locus tag: RIEPE_0192
RIEPE_0192 -155 3.4 AATTTCGATCACATTCAATCTT
-121 3.3 AAATTTGAACTAGTGCCAAATG
-64 3.7 ATTTTTAATACTCATCAAATCA
-7 3.3 TATTGAGATGAACAAAAGAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: serC
Ortholog function: Phosphoserine aminotransferase (EC 2.6.1.52)
Escherichia coli str. K-12 substr. MG1655 b0907 -155 4.8 TTGTGTGATGCAAGCCACATTT
Salmonella typhimurium LT2 STM0977 -142 4.2 TTGTGTGACGCATGCCGCATTT
Citrobacter koseri ATCC BAA-895 CKO_02165 -171 4.6 TTGTGTGACGTAGCGCGCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00935 -145 3.7 TTGTGTGACGGCGGCCGCGTTT
Enterobacter sp. 638 Ent638_1427 -119 4.4 TTGTGTGACGGTGGACACATTT
Yersinia pestis KIM y2784 -39 3.3 TATAACGATGGCAATCTCAGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2594 -78 3.5 AAGTATGACGGGTATAAAAATG
Proteus mirabilis HI4320 PMI0711 -119 3.5 TATTTTTGTGTGCTACACATAA
Position: -191
Score: 3.7
Sequence: ATTTATTAAGAGAATCAAATTA
Position: -4
Score: 3.8
Sequence: AAATATGATTCATATTAAATCT
Locus tag: RIEPE_0220
RIEPE_0220 -191 3.7 ATTTATTAAGAGAATCAAATTA
-4 3.8 AAATATGATTCATATTAAATCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pgk
Ortholog function: phosphoglycerate kinase
Escherichia coli str. K-12 substr. MG1655 b2926 -213 4.7 AAGTGTGATGTGAGTCAGATAA
Salmonella typhimurium LT2 STM3069 -213 5 AAATGTGATGCAGGTCAGATAA
Citrobacter koseri ATCC BAA-895 CKO_04296 -213 4.8 AAGTGTGATGCAGGTCAGATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03355 -213 4.8 AAATGTGATGTGAGTCATATAG
Enterobacter sp. 638 Ent638_3339 -215 4.5 AAATGTGACGCAAGTCATATAG
Erwinia amylovora ATCC 49946 EAM_2812 -208 4.1 TTTTGTGACGCAGATCGAAAGT
Yersinia pestis KIM y3308 -216 3.7 AATTGTGCCCTTTTTCAGGGAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3912 -194 4.1 TTTTATGACGCAGGTCACTCTT
Edwardsiella tarda EIB202 ETAE_2957 -233 4.9 AATTGTGATGCAATGCACGTTT
Proteus mirabilis HI4320 PMI0242 -253 4.4 AAATGTTAACAAGAGCACATTT
Position: -4
Score: 4.3
Sequence: ATTTATGATACATATAAAAAAA
Locus tag: RIEPE_0231
RIEPE_0231 -4 4.3 ATTTATGATACATATAAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhB
Ortholog function: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Enterobacter sp. 638 Ent638_1225 -295 4.2 TATCGTGACTGTGATCACTGTT
Erwinia amylovora ATCC 49946 EAM_1171 -249 4.4 AAGTGTGATTTTTGTCACTGTT
-190 3.6 TAATGAGATTGTGATCCACTTA
Yersinia pestis KIM y3068 -254 4.5 AATCGTGATCCTAATCACTGTT
Serratia proteamaculans 568 Spro_1266 -253 4.3 ATCCGTGATCTAAATCACTGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1360 -265 4.7 ATTCGTGATCTAAATCACTGTT
Edwardsiella tarda EIB202 ETAE_2585 -261 3.7 ATGCGTGACCGTTGTCACTGTT
Proteus mirabilis HI4320 PMI0568 -264 4.3 AAAAGTGATCCCTCTCACTGTT
Position: -131
Score: 3.7
Sequence: TTTCGTGAAATTTCTTATAAAA
Locus tag: RIEPE_0248
RIEPE_0248 -131 3.7 TTTCGTGAAATTTCTTATAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yigL
Ortholog function: Hydrolase (HAD superfamily)
Citrobacter koseri ATCC BAA-895 CKO_00167 -60 3.8 TATTGTGTCAGGCATCATAAAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04322 -56 3.8 TTGTGTGATACACGGTAAAAAA
Enterobacter sp. 638 Ent638_3970 -56 4.3 TTTTGTGATGCGTCACGAAAAA
Yersinia pestis KIM y0401 -144 4.8 AGTTGTGCTATGGCTCACAAAA
Serratia proteamaculans 568 Spro_0197 -88 3.8 TTGTAAGAATTGAATCACAATA
-53 4.2 TCTTGTGCCAGAGGTCACATTT
Edwardsiella tarda EIB202 ETAE_3342 -217 3.9 CGGTGTGATAATCCTCAAACTT
Position: -327
Score: 3.5
Sequence: TTATGTGAGTTAATTTTAGAAA
Locus tag: RIEPE_0490
RIEPE_0490 -327 3.5 TTATGTGAGTTAATTTTAGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: metK
Ortholog function: S-adenosylmethionine synthetase (EC 2.5.1.6)
Escherichia coli str. K-12 substr. MG1655 b2942 -200 3.6 GAATGAGACACGATTCAAAAAA
Salmonella typhimurium LT2 STM3090 -200 3.9 CATTGCGACGGCCTTCAAAAAA
Citrobacter koseri ATCC BAA-895 CKO_04317 -199 3.5 CAACGAGAGTTGATTCAAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03375 -199 4.3 AAATGCGACCGCCATCAAAAAA
Enterobacter sp. 638 Ent638_3346 -199 4.4 TAATGCGAGCGATATCAAAAAA
Proteus mirabilis HI4320 PMI2095 -275 3.5 CACTGTGATTCAGTTTTCACAG
Photorhabdus luminescens subsp. laumondii TTO1 plu3683 -205 3.3 GTTTATACTCGCAATCACATAA
Position: -178
Score: 3.8
Sequence: TATTTCGATATTCTTAAAAATT
Position: -2
Score: 3.6
Sequence: ATATGAAACATACTTCACTAAA
Locus tag: RIEPE_0538
RIEPE_0538 -178 3.8 TATTTCGATATTCTTAAAAATT
-2 3.6 ATATGAAACATACTTCACTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sodA
Ortholog function: Manganese superoxide dismutase (EC 1.15.1.1)
Escherichia coli str. K-12 substr. MG1655 b3908 -161 3.8 GTGGGTGATTTGCTTCACATCT
Citrobacter koseri ATCC BAA-895 CKO_03093 -150 4.4 ACGGGTGATTTGGCTCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04217 -150 4 TTAGTTGTTCTACATCACAAAA
Enterobacter sp. 638 Ent638_4063 -160 3.6 CCGCGTGAGCAGACTCACAATT
Proteus mirabilis HI4320 PMI3036 -292 3.7 TTTTGCGCATAAGATCACGAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0075 -297 3.7 TTTTGCGCGGAAGATCACGCAA
Position: 23
Score: 3.6
Sequence: TAGTATGATTCAGAAAAAACTT
Locus tag: RIEPE_0570
RIEPE_0570 23 3.6 TAGTATGATTCAGAAAAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: folE
Ortholog function: GTP cyclohydrolase I
Escherichia coli str. K-12 substr. MG1655 b2153 -101 3.8 TTATGTGCGCCGCCTCACGCAC
Salmonella typhimurium LT2 STM2193 -101 4 TTATGTGCGCTACCTCACGCAC
Citrobacter koseri ATCC BAA-895 CKO_00638 -98 3.8 TTATGTGCGCCGCCTCACGCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02591 -84 3.5 TTCTGTGCGCCACCTCACGCAC
Enterobacter sp. 638 Ent638_2753 -84 3.9 TTATGTGCGCCACCTCACGCAC
Serratia proteamaculans 568 Spro_1560 -121 4.3 AATCTTGACCGGGTTCACGTTA
Proteus mirabilis HI4320 PMI0639 -86 4.9 TAATGTGATTCAGCTCATCTAA
Position: -245
Score: 3.9
Sequence: TAAATTTATATGATTAACATTT
Locus tag: RIEPE_0573
RIEPE_0573 -245 3.9 TAAATTTATATGATTAACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yegH
Ortholog function: putative membrane protein
Escherichia coli str. K-12 substr. MG1655 b2063 -43 4.6 AATTGTGACATTTGTCATACAA
Salmonella typhimurium LT2 STM2119 -42 4.5 AATTGTGACAATTGTCATATTA
Citrobacter koseri ATCC BAA-895 CKO_00719 -42 4.5 AATTGTGACAACTGTCATATAA
Enterobacter sp. 638 Ent638_2677 -42 4.4 AAGTGTGACAAATGTCATATAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1559 -193 3.9 ATTTGTTAATGTGATCACATGT
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