Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of ArgR regulog to Yersinia pestis biovar Antiqua str. UG05-0454

Reference regulog properties
Source regulog: ArgR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: ArgR
Regulation mode: repressor
Biological process: Arginine biosynthesis; Arginine degradation
Effector: Arginine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia pestis biovar Antiqua str. UG05-0454
Orthologous TF(s) YpUG050454_3527
Regulated genes 11
Built upon 259 sites [see more]
Predicted regulatory interactions in Yersinia pestis biovar Antiqua str. UG05-0454
Locus tag Position Score Sequence
Position: -84
Score: 4.3
Sequence: GATGATTTTTTATGCATA
Locus tag: YpUG050454_0483
YpUG050454_0483 -84 4.3 GATGATTTTTTATGCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argD
Ortholog function: acetylornithine/succinyldiaminopimelate aminotransferase
Escherichia coli str. K-12 substr. MG1655 b3359 -69 4.8 AGTGATTTTTTATGCATA
Salmonella typhimurium LT2 STM3468 -69 4.8 AGTGATTTTTTATTCATA
-48 4.4 TGTGATTATAATTTCACT
Citrobacter koseri ATCC BAA-895 CKO_04780 -57 4.8 AGTGATTTTTTATGCATA
-36 3.9 TATGACTGAAATTTCATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03745 -74 4.7 ACTGATTTTTTATGCATA
Enterobacter sp. 638 Ent638_3786 -55 4.7 TGTGATTTTTTATGCATA
-34 4.4 TGTGATTATATTTTCACT
Erwinia amylovora ATCC 49946 EAM_3227 -70 4.7 TTTGACTTTTTATGCATA
-49 4.2 TATGACTATATTTTCATA
Yersinia pestis KIM y3954 -72 4.3 GATGATTTTTTATGCATA
Serratia proteamaculans 568 Spro_4582 -84 4.3 ATTGGTTTTTTATGCATA
-63 4.4 TGTGATTATATTTTCACT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4065 -72 4.8 AGTGATTTTTTATGCATA
-62 4.6 TATGCATATTTATTGACT
-51 4.5 ATTGACTATATTTTCATT
Edwardsiella tarda EIB202 ETAE_3247 -73 4.9 ATTGATTTATTATTCATA
-52 4.4 TATGATTATAAAATCACT
Proteus mirabilis HI4320 PMI2821 -68 4.9 TTTGATTTTTTATTCATA
-47 4.5 AGTGATTATATTTTCATT
Photorhabdus luminescens subsp. laumondii TTO1 plu0394 -74 4.8 TTTGATTTTTTATGCATA
Position: -90
Score: 5.4
Sequence: ATTGAATTTAAATTCATA
Locus tag: YpUG050454_1025
YpUG050454_1025 -90 5.4 ATTGAATTTAAATTCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argF
Ortholog function: ornithine carbamoyltransferase
Salmonella typhimurium LT2 STM4469 -66 4.3 AATGAATAATCATCCATA
-45 5.4 AGTGAATTTTAATTCAAT
Yersinia pestis KIM y0740 -111 4.5 ATTGAATATTTATACCTA
-90 5.4 ATTGAATTTAAATTCATA
Serratia proteamaculans 568 Spro_0554 -62 4.8 ATTGAATATTCATACATA
-41 5.5 AGTGAATTTAAATTCAAT
Proteus mirabilis HI4320 PMI3457 -55 4 GATGAATATTTATTGTAT
-34 5.6 ATTGAATATAAATTCAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4490 -63 4.5 ATTGCATTTTTATAGATA
-42 5.4 ATTGAATTTAAATGCAAA
Position: -11
Score: 4.1
Sequence: ATTGCATAAGTATGCCGT
Locus tag: YpUG050454_2327
YpUG050454_2327 -11 4.1 ATTGCATAAGTATGCCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: artP
Ortholog function: arginine ABC transporter, ATP-binding protein
Escherichia coli str. K-12 substr. MG1655 b0864 -73 4.9 ATTGCATAATTATTCTGT
-5 4 TGTCAATGAGTATTCAAT
Salmonella typhimurium LT2 STM0891 -73 4 ATTGCATAACTATTCTGC
-5 4 TGTCAATGAGTATTCAAT
Citrobacter koseri ATCC BAA-895 CKO_02239 -190 4.5 ATTGCATAACTATTCTGT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00897 -67 4 ATTGCATAACTATTCTGC
Enterobacter sp. 638 Ent638_1380 -79 4.5 ATTGCATAACTATTCTGT
Erwinia amylovora ATCC 49946 EAM_1311 -83 3.8 AATAAATTTTAACGCACA
-62 4.5 ATTGCATAACTATTCTGT
Yersinia pestis KIM y2829 -136 3.7 AGCGCAATCAAATACAAA
-62 4.1 ATTGCATAAGTATGCCGT
Serratia proteamaculans 568 Spro_1656 -83 3.8 AATAAATTTTAACGCACA
-62 4.5 ATTGCATAAGTATTCTGT
-26 4 CATCAATATCTATTCAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2667 -62 4 ATTGCATAACTATTCTGC
Edwardsiella tarda EIB202 ETAE_2230 -17 4.4 ATTGCATAGTTATTCTGA
Proteus mirabilis HI4320 PMI0682 -85 3.7 AGCAATTTTTTATGCACT
-63 4.4 GTTGCATAATTATTCTCA
-26 4 AGTTAATGACTATTCAAA
-5 4.1 AACGCATGAGTATTCAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu1588 -169 4.2 ATAGAATAAATAAGCTTT
-63 4.8 ATTGCATAATTATACTAA
-5 4.2 AAAGCATGAGTATTCAAT
Position: -51
Score: 4.8
Sequence: AAAGAATAAAAATACAAA
Position: -30
Score: 4.8
Sequence: ACCGAATAAAAATTCAAA
Locus tag: YpUG050454_2492
YpUG050454_2492 -51 4.8 AAAGAATAAAAATACAAA
-30 4.8 ACCGAATAAAAATTCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argA
Ortholog function: N-alpha-acetylglutamate synthase
Escherichia coli str. K-12 substr. MG1655 b2818 -49 4.6 ACAGAATAAAAATACACT
-28 4.5 TTCGAATAATCATGCAAA
Salmonella typhimurium LT2 STM2992 -52 4.6 ACAGAATAAAAATACACT
-31 4.9 TTCGAATAATAATTCACT
Citrobacter koseri ATCC BAA-895 CKO_04183 -140 4.6 ACAGAATAAAAATACATT
-119 4.6 TTCGAATAATCATGCAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03226 -50 4.7 ACAGAATAAAAATACAAT
-29 4.4 TACGAATAATCATGCATT
Enterobacter sp. 638 Ent638_3261 -51 4.7 ATCGAATAAAAATACACA
-30 4.5 TACGAATAAACATTCACT
Erwinia amylovora ATCC 49946 EAM_2726 -50 4.7 AAAGAATAAAAATACACT
-29 4.9 ATCGAATAATAATGCATA
Yersinia pestis KIM y3162 -122 3.8 TCAGTTTATTAATACATA
-103 4.2 ACTTTATATATATGCAGT
-51 4.8 AAAGAATAAAAATACAAA
-30 4.8 ACCGAATAAAAATTCAAA
Serratia proteamaculans 568 Spro_3812 -51 4.8 AAAGAATAAAAATACAAA
-30 4.8 ATCGTATAAATATGCAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0999 -50 4.5 AAAGAATAAAAATACAGA
-29 4.8 TACGAATAAAAATGCAAA
Edwardsiella tarda EIB202 ETAE_0713 100 3.9 GCAGAATAAAAATACAGA
121 4.4 AGCGAATAGATATTCACA
Proteus mirabilis HI4320 PMI2307 -52 4.7 AAAGAATAAAAATACATT
-31 4.3 TGCGAATAAAAATTCACC
47 4.3 TCCGTATATTAATGCACA
Photorhabdus luminescens subsp. laumondii TTO1 plu0644 -51 4.1 AAGGAATAAAAAAGCATA
-30 5 TACGAATAAAAATTCAAT
Position: -107
Score: 4.6
Sequence: AATCCATAAATATGCAAA
Locus tag: YpUG050454_2137
YpUG050454_2137 -107 4.6 AATCCATAAATATGCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argG
Ortholog function: argininosuccinate synthase
Escherichia coli str. K-12 substr. MG1655 b3172 -145 4.1 AGCGCATTATTTTACAAA
-69 5.2 TTTGCATAAAAATTCAGT
Salmonella typhimurium LT2 STM3290.S -67 5.2 TTTGCATAAAAATGCACT
Citrobacter koseri ATCC BAA-895 CKO_04574 -68 5.2 TTTGCATAAAAATGCACT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03580 -69 5.1 AATGCATAAAAATGCAGT
Enterobacter sp. 638 Ent638_3608 -67 4.9 TTTGCATAAACATGCAAA
Erwinia amylovora ATCC 49946 EAM_0139 -139 4.2 TATCAATATTCATGCATT
-118 5.2 AGTGAATAAAAATACAAT
Yersinia pestis KIM y2595 -104 4.6 AATCCATAAATATGCAAA
Serratia proteamaculans 568 Spro_4779 -185 4.2 TATCAATATTCATGCATT
-164 5.1 TGTGAATAAAAATACAAT
Edwardsiella tarda EIB202 ETAE_3480 -178 4.3 TATCAATATTCATGCAAT
-157 5.2 TATGAATAAAAATACAAT
Proteus mirabilis HI4320 PMI3239 -75 4.2 TATCAATATTCATGCACT
-54 5.2 TTTGAATAAAAATACATT
Photorhabdus luminescens subsp. laumondii TTO1 plu4742 -77 4.2 TATCAATATTCATGCATT
-56 5.2 TTTGAATAAAAATACATT
Position: -328
Score: 3.8
Sequence: AAATAAAAAAAATTCAGT
Position: -187
Score: 3.7
Sequence: AAATCAATATTATTCATA
Position: -57
Score: 3.7
Sequence: TAGTCATAATTATGCAGT
Locus tag: YpUG050454_3814
YpUG050454_3814 -328 3.8 AAATAAAAAAAATTCAGT
-187 3.7 AAATCAATATTATTCATA
-57 3.7 TAGTCATAATTATGCAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltB
Ortholog function: glutamate synthase, large subunit
Escherichia coli str. K-12 substr. MG1655 b3212 -484 4.4 ACTGCATAATCAATCAAA
-463 3.8 ACCGAAATTTCATGCATA
Salmonella typhimurium LT2 STM3330 -574 4.5 ATTGCATAATCAAGCAAA
Citrobacter koseri ATCC BAA-895 CKO_04620 -540 4.5 ATTGCATAATCAAGCAAA
-519 3.9 ACCGCAATTTCATTCACT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03624 -536 3.8 AATGAAATATATTTCAGC
Enterobacter sp. 638 Ent638_3656 -495 4.1 TTTGAATAAAAACCCACT
-474 4.1 ATTGCAATTTCATTCACC
Yersinia pestis KIM y0128 -590 3.7 ATTCATCATAAATGCAAA
-580 3.8 AATGCAAATAAAACCACT
Serratia proteamaculans 568 Spro_4344 -586 4.4 ATTCATTATAAATGCAAA
-576 4.4 AATGCAAATAAAATCACT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0312 -563 4.8 AATGCATTTTTATTCGCT
Edwardsiella tarda EIB202 ETAE_0527 -584 4.3 TCTGTATCAAAATTCACT
-563 4.8 AGTGACTTTAAATTCATT
Proteus mirabilis HI4320 PMI3677 -275 4.5 AATGAAATAATTTTCAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4009 -562 4.5 CATGAATAAATAATCAAA
-541 3.9 ATTGACAAAATAAGCATA
Position: -123
Score: 5.3
Sequence: TTTGCATAATTATGCAAT
Locus tag: YpUG050454_3282
YpUG050454_3282 -123 5.3 TTTGCATAATTATGCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: astC
Ortholog function: acetylornithine and succinylornithine aminotransferase
Yersinia pestis KIM y2349 -219 5.3 TTTGCATAATTATGCAAT
Position: -198
Score: 4.9
Sequence: TATGAATAAAAATACAGT
Locus tag: YpUG050454_3498
YpUG050454_3498 -198 4.9 TATGAATAAAAATACAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase
Escherichia coli str. K-12 substr. MG1655 b3958 -127 4.1 TATCAATATTCATGCAGT
-106 5 TATGAATAAAAATACACT
Salmonella typhimurium LT2 STM4121 -62 4.2 TATCAATATTCATGCATT
-41 5 TATGAATAAAAATACATT
Citrobacter koseri ATCC BAA-895 CKO_03036 -128 4.2 TATCAATATTCATGCATT
-107 5 TGTGAATAAAAATACATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04247 -87 4.2 TATCAATATTCATGCATT
-66 5.3 TTTGAATAAAAATACAAT
Enterobacter sp. 638 Ent638_4028 -62 4.2 TATCAATATTCATGCACT
-41 5 TGTGAATAAAAATACACT
Yersinia pestis KIM y0310 -219 4.1 TATCAATATTCATGCAGT
-198 4.9 TATGAATAAAAATACAGT
-65 4.5 TATGTTTTTATATGCATA
Serratia proteamaculans 568 Spro_4781 -185 4.2 TATCAATATTCATGCATT
-164 5.1 TGTGAATAAAAATACAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0192 -177 4.2 TATCAATATTCATGCATT
-156 5.3 TTTGAATAAAAATACAAT
Edwardsiella tarda EIB202 ETAE_3482 -178 4.3 TATCAATATTCATGCAAT
-157 5.2 TATGAATAAAAATACAAT
Proteus mirabilis HI4320 PMI3237 -75 4.2 TATCAATATTCATGCACT
-54 5.2 TTTGAATAAAAATACATT
Photorhabdus luminescens subsp. laumondii TTO1 plu4744 -77 4.2 TATCAATATTCATGCATT
-56 5.2 TTTGAATAAAAATACATT
Position: -64
Score: 4.9
Sequence: ACTGTATTTTTATTCATA
Locus tag: YpUG050454_3499
YpUG050454_3499 -64 4.9 ACTGTATTTTTATTCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argE
Ortholog function: acetylornithine deacetylase
Escherichia coli str. K-12 substr. MG1655 b3957 -65 5 AGTGTATTTTTATTCATA
-44 4.1 ACTGCATGAATATTGATA
Salmonella typhimurium LT2 STM4120 -65 5 AATGTATTTTTATTCATA
-44 4.2 AATGCATGAATATTGATA
Citrobacter koseri ATCC BAA-895 CKO_03037 -26 5 AATGTATTTTTATTCACA
-5 4.2 AaTGcATgaATATTgAta
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04246 -26 5.3 ATTGTATTTTTATTCAAA
-4 4.2 AaTGcATgaATATTgAta
Enterobacter sp. 638 Ent638_4029 -65 5 AGTGTATTTTTATTCACA
-44 4.2 AGTGCATGAATATTGATA
Erwinia amylovora ATCC 49946 EAM_0137 -65 5.2 ATTGTATTTTTATTCACT
-44 4.2 AATGCATGAATATTGATA
Yersinia pestis KIM y0309 -197 4.5 TATGCATATAAAAACATA
-64 4.9 ACTGTATTTTTATTCATA
-43 4.1 ACTGCATGAATATTGATA
Serratia proteamaculans 568 Spro_4782 -70 5.1 ATTGTATTTTTATTCACA
-49 4.2 AATGCATGAATATTGATA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0191 -64 5.3 ATTGTATTTTTATTCAAA
-43 4.2 AATGCATGAATATTGATA
Edwardsiella tarda EIB202 ETAE_3483 -64 5.2 ATTGTATTTTTATTCATA
-43 4.3 ATTGCATGAATATTGATA
Proteus mirabilis HI4320 PMI3236 -64 5.2 AATGTATTTTTATTCAAA
-43 4.2 AGTGCATGAATATTGATA
Photorhabdus luminescens subsp. laumondii TTO1 plu4745 -64 5.2 AATGTATTTTTATTCAAA
-43 4.2 AATGCATGAATATTGATA
Position: -66
Score: 5
Sequence: GTTGAATAAAAATTCATT
Locus tag: YpUG050454_3527
YpUG050454_3527 -66 5 GTTGAATAAAAATTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argR
Ortholog function: arginine repressor
Escherichia coli str. K-12 substr. MG1655 b3237 -62 4.9 TTTGCATAAAAATTCATC
Salmonella typhimurium LT2 STM3360 -64 4.9 TTTGCATAAAAATTCATC
Citrobacter koseri ATCC BAA-895 CKO_04642 -64 4.9 TTTGCATAAAAATTCATC
-44 4 TATGCATAATAATGTTGT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03645 -64 4.8 TTTGCATAAAAATTCATG
Enterobacter sp. 638 Ent638_3672 -63 5.3 TTTGCATAAAAATTCATT
-53 4.1 AATTCATTTACATGCATA
Erwinia amylovora ATCC 49946 EAM_3122 -83 5.3 TTTGCATAAAAATTCATT
-63 4.7 ATTGCATAATAATGTAAA
Yersinia pestis KIM y0667 -66 5 GTTGAATAAAAATTCATT
-56 4.5 AATTCATTTATATGCATA
Serratia proteamaculans 568 Spro_0468 -64 5.4 ATTGCATAAAAATTCATT
-54 4.5 AATTCATTTATATGCATA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0684 -65 5.3 ATTGCATAAAAATTCACA
Edwardsiella tarda EIB202 ETAE_0384 -61 4.9 ATTGCATAAAAATTCACG
Proteus mirabilis HI4320 PMI3399 -64 4.9 GTTGCATAAAAATTCACT
Photorhabdus luminescens subsp. laumondii TTO1 plu4548 -84 3.9 ATTGGCTATAAAATCATT
-63 5.4 ATTGCATAAAAATTCATT
Position: -22
Score: 5
Sequence: TATGAATTAATATGCAGA
Locus tag: YpUG050454_2734
YpUG050454_2734 -22 5 TATGAATTAATATGCAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: carA
Ortholog function: carbamoyl-phosphate synthase small subunit
Escherichia coli str. K-12 substr. MG1655 b0032 -49 5.2 TGTGAATTAATATGCAAA
-28 3.9 AGTGAGTGAATATTCTCT
Salmonella typhimurium LT2 STM0066 -49 5.3 AATGAATTAATATGCAAA
-28 3.9 AGTGAGTGAATATTCTCT
Citrobacter koseri ATCC BAA-895 CKO_03351 -22 5.3 AATGAATTAATATGCAAA
-1 3.9 AGTGAGTGAATATTCTCT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00040 -22 5.2 TATGAATTAATATGCAAA
Enterobacter sp. 638 Ent638_0591 -49 5 TGTGAATTAATATGCAGA
-28 3.9 AGTGAGTGAATATTCTTT
Erwinia amylovora ATCC 49946 EAM_0660 -49 4.5 CCTGAATTAATATGCAGA
Yersinia pestis KIM y3693 -22 5 TATGAATTAATATGCAGA
Serratia proteamaculans 568 Spro_0713 -49 5.1 TCTGAATTAATATGCAAA
-28 3.8 TGTGATTGATTATTCCTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3871 -49 5.1 TCTGAATTAATATGCAAA
Edwardsiella tarda EIB202 ETAE_0593 -128 5 TCTGAATTAATATGCATA
Proteus mirabilis HI4320 PMI0020 -49 4.6 TCTGAATTAATATGCATG
-28 4.4 TGTGATTTATTATTCTCT
Photorhabdus luminescens subsp. laumondii TTO1 plu0603 -49 5.1 TCTGAATTAATATGCACT
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