Propagation of Crp regulog to Buchnera aphidicola str. Cc (Cinara cedri)
| Source regulog: | Crp - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Buchnera aphidicola str. Cc (Cinara cedri) |
| Orthologous TF(s) | No orthologous TFs found |
| Regulated genes | 26 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -2
Score: 3.8 Sequence: ATATGTTATCTAGAAAAGATTT
Locus tag: BCc_058
|
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| BCc_058 | -2 | 3.8 | ATATGTTATCTAGAAAAGATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tktB | ||||
| Ortholog function: Transketolase (EC 2.2.1.1) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2465 | -83 | 4 | TTTTTTGATGCGTTTAGCGAAA |
| -53 | 3.9 | AAGTGTGAATTAACGCACTCAT | ||
| Salmonella typhimurium LT2 | STM2474 | -53 | 3.7 | AAGTGTGAATCAACACACTCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02799 | -80 | 3.7 | TTTGGTTATGTACCTCATCAAT |
| Enterobacter sp. 638 | Ent638_2960 | -152 | 3.6 | ATTTGTTATCAATTTATAACAA |
| -83 | 3.9 | TTTTGTTAAGTACGTCATGTAT | ||
|
Position: -34
Score: 3.7 Sequence: AAATTATATATAAATAACATTA
Locus tag: BCc_059
|
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| BCc_059 | -34 | 3.7 | AAATTATATATAAATAACATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dapE | ||||
| Ortholog function: N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2472 | -246 | 3.8 | GTATGTGATACACAGCAACATT |
| Salmonella typhimurium LT2 | STM2483 | -282 | 4 | TTATGTGACTTACTGCAATATT |
| Citrobacter koseri ATCC BAA-895 | CKO_00316 | -276 | 4 | TTATGTGACTTACTGCAATATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02805 | -218 | 4 | TAATGTGACGTAGAGCAACCTC |
| -179 | 4 | TAATGTTAAAGCCCTCACATCA | ||
| Enterobacter sp. 638 | Ent638_2967 | -254 | 4 | TTATGTGACCAATAGCAATATT |
| -77 | 3.6 | ATATGTTATGTTTTGCCAAATA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1291 | -138 | 3.7 | TTCTGCAACGCAGTTCACAGTA |
|
Position: -189
Score: 3.7 Sequence: TTACATGATTTAAATAAAGTAT
Locus tag: BCc_077
|
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| BCc_077 | -189 | 3.7 | TTACATGATTTAAATAAAGTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aroH | ||||
| Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1704 | -106 | 4.3 | AGGTGTGACACACCTCGCACTT |
| -64 | 4 | TATCGTGATGCGCATCACTTCC | ||
| Salmonella typhimurium LT2 | STM1347 | -106 | 4.3 | AGGTGTGACACGCCTCGCACTT |
| -64 | 4 | TATCGTGATGCCCATCACTTCC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_01728 | -115 | 4.3 | AGGTGTGAAACGCCTCGCATTT |
| -64 | 4.3 | TATTGTGATGCCCATCACTTCC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02162 | -63 | 4 | TATCGTGATGCGCATCACTTCC |
| Enterobacter sp. 638 | Ent638_1743 | -126 | 3.6 | AGTTATGATCGCTTTCACTCTC |
| -62 | 3.6 | TAAGGTGATGCCCATCACTTCC | ||
| Yersinia pestis KIM | y1928 | -64 | 4.3 | TATTGTGATCGCCATCACTTCC |
| Serratia proteamaculans 568 | Spro_2172 | -135 | 3.9 | TTTTGTGCTTTTTTTAGCGATT |
| -64 | 4.3 | TATTGTGATCGCCATCACTTCC | ||
| Edwardsiella tarda EIB202 | ETAE_1792 | -63 | 4 | TATCGTGATCCCCATCACTTCC |
| Proteus mirabilis HI4320 | PMI1423 | -55 | 3.9 | TATTGTGATCTTAATCACTGGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2630 | -62 | 3.8 | TATTGTAATTTCCATTATCTAT |
|
Position: -9
Score: 3.7 Sequence: TATTTTAATATGATTAAAACTA
Locus tag: BCc_121
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| BCc_121 | -9 | 3.7 | TATTTTAATATGATTAAAACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ydhD | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1654 | -132 | 3.6 | ATATTTGAAATGCAACAAATAG |
| Enterobacter sp. 638 | Ent638_1793 | -186 | 3.6 | TGAAGCGCTTTTGCTCACACTA |
| Erwinia amylovora ATCC 49946 | EAM_1665 | -145 | 3.9 | AAATGTTATTTTGTTATCATCT |
| Proteus mirabilis HI4320 | PMI1394 | -292 | 3.6 | TAATGTGCATTTATACACTTAT |
|
Position: -333
Score: 3.3 Sequence: TATTTTTATTTAAATTTTAAAT
Position: -321
Score: 3.2 Sequence: AATTTTAAATATTTTAATATAT
Position: -312
Score: 3.3 Sequence: TATTTTAATATATCTTTAAAAA
Position: -284
Score: 3.1 Sequence: AAATTTAATTATTTTATAAATT
Position: -273
Score: 3.2 Sequence: TTTTATAAATTATTTTATATAT
Position: -259
Score: 3.3 Sequence: TTATATATATGGTATCACAATA
Position: -199
Score: 3.1 Sequence: AATTTTAATTGAAAATAAAAAA
Position: -182
Score: 3.2 Sequence: AAAAATAATTTTTCTTAAATTT
Position: -126
Score: 3.2 Sequence: AATTTTTATTTTTATTTTAAAT
Position: -120
Score: 3.2 Sequence: TATTTTTATTTTAAATATATAA
Position: -88
Score: 3.4 Sequence: ATATTTAATATTTTTAAAGAAA
Locus tag: BCc_131
|
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| BCc_131 | -333 | 3.3 | TATTTTTATTTAAATTTTAAAT | |
| -321 | 3.2 | AATTTTAAATATTTTAATATAT | ||
| -312 | 3.3 | TATTTTAATATATCTTTAAAAA | ||
| -284 | 3.1 | AAATTTAATTATTTTATAAATT | ||
| -273 | 3.2 | TTTTATAAATTATTTTATATAT | ||
| -259 | 3.3 | TTATATATATGGTATCACAATA | ||
| -199 | 3.1 | AATTTTAATTGAAAATAAAAAA | ||
| -182 | 3.2 | AAAAATAATTTTTCTTAAATTT | ||
| -126 | 3.2 | AATTTTTATTTTTATTTTAAAT | ||
| -120 | 3.2 | TATTTTTATTTTAAATATATAA | ||
| -88 | 3.4 | ATATTTAATATTTTTAAAGAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aceE | ||||
| Ortholog function: Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0114 | -156 | 3.7 | AAACGTTATATATGTCAAGTTG |
| -131 | 3.8 | AAATGTGCACAGTTTCATGATT | ||
| Salmonella typhimurium LT2 | STM0152 | -157 | 3.5 | AAACATGATTTCTGTAAAATTG |
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| -79 | 3 | CTTATTAAGCTTTCTCACGAAA | ||
| -54 | 3.4 | TAATGGGACAGGTTCCAGATAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03259 | -180 | 3.2 | ATTTGTGCATAGTTACATCTTT |
| -157 | 3.1 | AAACGTTATTTCTGTAATCTTG | ||
| -148 | 3.3 | TTCTGTAATCTTGTTAAAATGT | ||
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00118 | -155 | 3.2 | AAATGTTATTTCTGTAAGGTTG |
| -118 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Enterobacter sp. 638 | Ent638_0660 | -120 | 3.2 | TTTACTGATTTCAATCAAAACC |
| -77 | 3.1 | TATTGTATTTTCTGGCGAAAAT | ||
| -68 | 3 | TTTAGCGATACGAATATGAAAT | ||
| Erwinia amylovora ATCC 49946 | EAM_0747 | -198 | 3.3 | TAAAGCGATCGGATTTAACAAT |
| Yersinia pestis KIM | y0767 | -151 | 4.2 | AAATGTGCTGGGTTTCATGATT |
| -139 | 3.3 | TTTCATGATTTCGGTCAAGGTC | ||
| -74 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Serratia proteamaculans 568 | Spro_4011 | -132 | 3.1 | AAATGTGCGGGTAACCTGATTT |
| -56 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3789 | -120 | 3.7 | ATTGGTGATTTAGCTCAAGGTC |
| -55 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Edwardsiella tarda EIB202 | ETAE_0659 | -143 | 3.2 | TTTCATGATTTACATCAATAGT |
| Proteus mirabilis HI4320 | PMI2046 | -218 | 3.1 | TGTTTTTAATCTTTTCTAATAA |
| -199 | 4.4 | TAATGCGATCTAGTTATCAAAT | ||
| -181 | 4.2 | AAATTTGATGAATTTATCAAAT | ||
| -158 | 3 | ATTTGTTAAAATTTGCAGGTTT | ||
| -138 | 3.9 | TTTTATGATTTCGCTCAACAAC | ||
| -95 | 3.1 | CTTTGTTACTTTATTATCCATT | ||
| -89 | 3.1 | TACTTTATTATCCATTACATTA | ||
|
Position: -73
Score: 3.2 Sequence: TTATGTTAAATTATAAATATTT
Position: -57
Score: 3.7 Sequence: ATATTTAATTTTATTAAAAAAA
Position: -52
Score: 3.3 Sequence: TAATTTTATTAAAAAAAAATAA
Locus tag: BCc_133
|
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| BCc_133 | -73 | 3.2 | TTATGTTAAATTATAAATATTT | |
| -57 | 3.7 | ATATTTAATTTTATTAAAAAAA | ||
| -52 | 3.3 | TAATTTTATTAAAAAAAAATAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lpdA | ||||
| Ortholog function: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0116 | -224 | 3.3 | AATTGTTAACAATTTTGTAAAA |
| Salmonella typhimurium LT2 | STM0154 | -153 | 3.5 | GTTTGTGAGGTTATTAGCGAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03256 | -95 | 3.3 | AATTGTTAACAATTTTGTAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00120 | -105 | 3.3 | AATTGTTAACAATTTTGTAAAA |
| Yersinia pestis KIM | y0769 | -253 | 3.3 | ATTGGTGATCTTGTTATTACTG |
| Serratia proteamaculans 568 | Spro_4009 | -246 | 3.6 | TATGGTGATGTAATGAAAAAAG |
| Proteus mirabilis HI4320 | PMI2044 | -133 | 3.4 | GGTTGTGAGATCTGTCATGTTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3621 | -131 | 3.9 | TGTTGCGAGTTCTGTCACGTTA |
|
Position: -98
Score: 3.9 Sequence: TATTTTTATATTTTTAAAAATT
Locus tag: BCc_178
|
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| BCc_178 | -98 | 3.9 | TATTTTTATATTTTTAAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glyA | ||||
| Ortholog function: serine hydroxymethyltransferase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2551 | -229 | 3.8 | GAATGTGATGAAGTGAAAAATT |
| Proteus mirabilis HI4320 | PMI1867 | -210 | 3.8 | TAGCGAGATGTGCCTCAAAAAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3291 | -178 | 3.8 | TAGCGTAATTTTCATTACACTA |
|
Position: -44
Score: 3.9 Sequence: ATTTTTGATTTTTATAAATTTT
Locus tag: BCc_191
|
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| BCc_191 | -44 | 3.9 | ATTTTTGATTTTTATAAATTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aroA | ||||
| Ortholog function: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0908 | -155 | 4.8 | TTGTGTGATGCAAGCCACATTT |
| Salmonella typhimurium LT2 | STM0978 | -142 | 4.2 | TTGTGTGACGCATGCCGCATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02164 | -171 | 4.6 | TTGTGTGACGTAGCGCGCATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00936 | -145 | 3.7 | TTGTGTGACGGCGGCCGCGTTT |
| Enterobacter sp. 638 | Ent638_1428 | -119 | 4.4 | TTGTGTGACGGTGGACACATTT |
| Yersinia pestis KIM | y2783 | -39 | 3.3 | TATAACGATGGCAATCTCAGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2593 | -78 | 3.5 | AAGTATGACGGGTATAAAAATG |
| Edwardsiella tarda EIB202 | ETAE_2177 | -104 | 3.8 | TATAGTGACAGCGCTCAATAAA |
|
Position: -112
Score: 3.6 Sequence: ATATATAATATATTACATATAT
Position: -83
Score: 3.6 Sequence: AAATTTAATAAAATTAATATTT
Locus tag: BCc_199
|
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| BCc_199 | -112 | 3.6 | ATATATAATATATTACATATAT | |
| -83 | 3.6 | AAATTTAATAAAATTAATATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: zwf | ||||
| Ortholog function: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1852 | -208 | 3.9 | TAACATGATCAGTGTCAGATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02367 | -225 | 3.8 | TTACATGATCAGGGTCGTATTT |
| Yersinia pestis KIM | y2244 | -231 | 4.1 | TAATATGACCTGTGTCTAATTT |
| Proteus mirabilis HI4320 | PMI1157 | -225 | 3.7 | AAGTATGACCTGTGTCTAACTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2122 | -234 | 4.2 | TAATTTAATGTTTTTCATAAAA |
|
Position: -40
Score: 3.7 Sequence: TTTTATTATTTTAATAATATAA
Locus tag: BCc_252
|
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| BCc_252 | -40 | 3.7 | TTTTATTATTTTAATAATATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fis | ||||
| Ortholog function: DNA-binding protein Fis | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3261 | -297 | 4.4 | AAGTGCGAGCAAGCTCACAAAA |
| -212 | 4.3 | AATTGAGAACTTACTCAAATTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04673 | -212 | 3.7 | AAATGAGAAGTTACGCAAAATT |
| Enterobacter sp. 638 | Ent638_3700 | -299 | 4.1 | AAATGGGACCCAGATCGCAAAG |
| Erwinia amylovora ATCC 49946 | EAM_3147 | -219 | 4 | TATTGTTAACTTGCTCACAAGA |
| Yersinia pestis KIM | y0214 | -57 | 4.3 | TAACGTGATGTTATTTATAATT |
| Proteus mirabilis HI4320 | PMI3622 | -94 | 3.8 | TTTCGCGATTTGGTTAAACTTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4089 | -191 | 3.7 | CTAAGTGATAAACTTTACCAAT |
|
Position: -189
Score: 3.7 Sequence: TAATTTAATTTTTATTAAAAAT
Position: -33
Score: 3.7 Sequence: AACTATTATATAATTCATAAAA
Locus tag: BCc_278
|
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| BCc_278 | -189 | 3.7 | TAATTTAATTTTTATTAAAAAT | |
| -33 | 3.7 | AACTATTATATAATTCATAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pgk | ||||
| Ortholog function: phosphoglycerate kinase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2926 | -213 | 4.7 | AAGTGTGATGTGAGTCAGATAA |
| Salmonella typhimurium LT2 | STM3069 | -213 | 5 | AAATGTGATGCAGGTCAGATAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04296 | -213 | 4.8 | AAGTGTGATGCAGGTCAGATAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03355 | -213 | 4.8 | AAATGTGATGTGAGTCATATAG |
| Enterobacter sp. 638 | Ent638_3339 | -215 | 4.5 | AAATGTGACGCAAGTCATATAG |
| Erwinia amylovora ATCC 49946 | EAM_2812 | -208 | 4.1 | TTTTGTGACGCAGATCGAAAGT |
| Yersinia pestis KIM | y3308 | -216 | 3.7 | AATTGTGCCCTTTTTCAGGGAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3912 | -194 | 4.1 | TTTTATGACGCAGGTCACTCTT |
| Edwardsiella tarda EIB202 | ETAE_2957 | -233 | 4.9 | AATTGTGATGCAATGCACGTTT |
| Proteus mirabilis HI4320 | PMI0242 | -253 | 4.4 | AAATGTTAACAAGAGCACATTT |
|
Position: -169
Score: 3.6 Sequence: TTATTTTAAGTATTTAAAATTA
Position: -105
Score: 3.7 Sequence: AAATTTAATTTTTTTTAAATAA
Locus tag: BCc_307
|
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| BCc_307 | -169 | 3.6 | TTATTTTAAGTATTTAAAATTA | |
| -105 | 3.7 | AAATTTAATTTTTTTTAAATAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybeD | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0631 | -94 | 3.6 | AAGTGTAATTTCCGTCCCCATA |
| Salmonella typhimurium LT2 | STM0636 | -93 | 4.2 | AAGTGTGATTTTCGTCCCCATA |
| -35 | 3.9 | AGTTGTTATTTTTTTTACGTAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02527 | -91 | 4.4 | AAGTGTGATTTCCATCCCCATA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00663 | -97 | 4.4 | AAGTGTGATTTCCATCCCCATA |
| Enterobacter sp. 638 | Ent638_1166 | -90 | 4.4 | AAGTGTGATTTCCATCCCCATA |
| Yersinia pestis KIM | y1174 | -146 | 4.2 | TATTGTGATTAATCTTATATTG |
|
Position: -89
Score: 3.7 Sequence: TTATTTAATAAATATAAAAAAT
Position: -70
Score: 3.8 Sequence: AATTTTTATATTTATTATATAT
Locus tag: BCc_372
|
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| BCc_372 | -89 | 3.7 | TTATTTAATAAATATAAAAAAT | |
| -70 | 3.8 | AATTTTTATATTTATTATATAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pgi | ||||
| Ortholog function: Glucose-6-phosphate isomerase (EC 5.3.1.9) | ||||
| Salmonella typhimurium LT2 | STM4221 | -61 | 3.7 | TTCTGTGACTGGCGTTACAATC |
| Citrobacter koseri ATCC BAA-895 | CKO_03893 | -61 | 4.1 | TTTTGTGACTGGCGTTACAATC |
| Serratia proteamaculans 568 | Spro_4477 | -80 | 3.7 | AAAAGAGATCATAATCACAGTC |
| Proteus mirabilis HI4320 | PMI2754 | -245 | 3.7 | CAGTGAGATGTTAAACACAGTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4379 | -205 | 3.8 | TGACGCGATGAGAATCATAAAA |