Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Buchnera aphidicola str. Cc (Cinara cedri)

Reference regulog properties
Source regulog: Crp - Enterobacteriales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Buchnera aphidicola str. Cc (Cinara cedri)
Orthologous TF(s) No orthologous TFs found
Regulated genes 26
Built upon 2301 sites [see more]
Predicted regulatory interactions in Buchnera aphidicola str. Cc (Cinara cedri)
Locus tag Position Score Sequence
Position: -2
Score: 3.8
Sequence: ATATGTTATCTAGAAAAGATTT
Locus tag: BCc_058
BCc_058 -2 3.8 ATATGTTATCTAGAAAAGATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tktB
Ortholog function: Transketolase (EC 2.2.1.1)
Escherichia coli str. K-12 substr. MG1655 b2465 -83 4 TTTTTTGATGCGTTTAGCGAAA
-53 3.9 AAGTGTGAATTAACGCACTCAT
Salmonella typhimurium LT2 STM2474 -53 3.7 AAGTGTGAATCAACACACTCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02799 -80 3.7 TTTGGTTATGTACCTCATCAAT
Enterobacter sp. 638 Ent638_2960 -152 3.6 ATTTGTTATCAATTTATAACAA
-83 3.9 TTTTGTTAAGTACGTCATGTAT
Position: -34
Score: 3.7
Sequence: AAATTATATATAAATAACATTA
Locus tag: BCc_059
BCc_059 -34 3.7 AAATTATATATAAATAACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dapE
Ortholog function: N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18)
Escherichia coli str. K-12 substr. MG1655 b2472 -246 3.8 GTATGTGATACACAGCAACATT
Salmonella typhimurium LT2 STM2483 -282 4 TTATGTGACTTACTGCAATATT
Citrobacter koseri ATCC BAA-895 CKO_00316 -276 4 TTATGTGACTTACTGCAATATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02805 -218 4 TAATGTGACGTAGAGCAACCTC
-179 4 TAATGTTAAAGCCCTCACATCA
Enterobacter sp. 638 Ent638_2967 -254 4 TTATGTGACCAATAGCAATATT
-77 3.6 ATATGTTATGTTTTGCCAAATA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1291 -138 3.7 TTCTGCAACGCAGTTCACAGTA
Position: -189
Score: 3.7
Sequence: TTACATGATTTAAATAAAGTAT
Locus tag: BCc_077
BCc_077 -189 3.7 TTACATGATTTAAATAAAGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroH
Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase
Escherichia coli str. K-12 substr. MG1655 b1704 -106 4.3 AGGTGTGACACACCTCGCACTT
-64 4 TATCGTGATGCGCATCACTTCC
Salmonella typhimurium LT2 STM1347 -106 4.3 AGGTGTGACACGCCTCGCACTT
-64 4 TATCGTGATGCCCATCACTTCC
Citrobacter koseri ATCC BAA-895 CKO_01728 -115 4.3 AGGTGTGAAACGCCTCGCATTT
-64 4.3 TATTGTGATGCCCATCACTTCC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02162 -63 4 TATCGTGATGCGCATCACTTCC
Enterobacter sp. 638 Ent638_1743 -126 3.6 AGTTATGATCGCTTTCACTCTC
-62 3.6 TAAGGTGATGCCCATCACTTCC
Yersinia pestis KIM y1928 -64 4.3 TATTGTGATCGCCATCACTTCC
Serratia proteamaculans 568 Spro_2172 -135 3.9 TTTTGTGCTTTTTTTAGCGATT
-64 4.3 TATTGTGATCGCCATCACTTCC
Edwardsiella tarda EIB202 ETAE_1792 -63 4 TATCGTGATCCCCATCACTTCC
Proteus mirabilis HI4320 PMI1423 -55 3.9 TATTGTGATCTTAATCACTGGG
Photorhabdus luminescens subsp. laumondii TTO1 plu2630 -62 3.8 TATTGTAATTTCCATTATCTAT
Position: -9
Score: 3.7
Sequence: TATTTTAATATGATTAAAACTA
Locus tag: BCc_121
BCc_121 -9 3.7 TATTTTAATATGATTAAAACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydhD
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b1654 -132 3.6 ATATTTGAAATGCAACAAATAG
Enterobacter sp. 638 Ent638_1793 -186 3.6 TGAAGCGCTTTTGCTCACACTA
Erwinia amylovora ATCC 49946 EAM_1665 -145 3.9 AAATGTTATTTTGTTATCATCT
Proteus mirabilis HI4320 PMI1394 -292 3.6 TAATGTGCATTTATACACTTAT
Position: -333
Score: 3.3
Sequence: TATTTTTATTTAAATTTTAAAT
Position: -321
Score: 3.2
Sequence: AATTTTAAATATTTTAATATAT
Position: -312
Score: 3.3
Sequence: TATTTTAATATATCTTTAAAAA
Position: -284
Score: 3.1
Sequence: AAATTTAATTATTTTATAAATT
Position: -273
Score: 3.2
Sequence: TTTTATAAATTATTTTATATAT
Position: -259
Score: 3.3
Sequence: TTATATATATGGTATCACAATA
Position: -199
Score: 3.1
Sequence: AATTTTAATTGAAAATAAAAAA
Position: -182
Score: 3.2
Sequence: AAAAATAATTTTTCTTAAATTT
Position: -126
Score: 3.2
Sequence: AATTTTTATTTTTATTTTAAAT
Position: -120
Score: 3.2
Sequence: TATTTTTATTTTAAATATATAA
Position: -88
Score: 3.4
Sequence: ATATTTAATATTTTTAAAGAAA
Locus tag: BCc_131
BCc_131 -333 3.3 TATTTTTATTTAAATTTTAAAT
-321 3.2 AATTTTAAATATTTTAATATAT
-312 3.3 TATTTTAATATATCTTTAAAAA
-284 3.1 AAATTTAATTATTTTATAAATT
-273 3.2 TTTTATAAATTATTTTATATAT
-259 3.3 TTATATATATGGTATCACAATA
-199 3.1 AATTTTAATTGAAAATAAAAAA
-182 3.2 AAAAATAATTTTTCTTAAATTT
-126 3.2 AATTTTTATTTTTATTTTAAAT
-120 3.2 TATTTTTATTTTAAATATATAA
-88 3.4 ATATTTAATATTTTTAAAGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceE
Ortholog function: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Escherichia coli str. K-12 substr. MG1655 b0114 -156 3.7 AAACGTTATATATGTCAAGTTG
-131 3.8 AAATGTGCACAGTTTCATGATT
Salmonella typhimurium LT2 STM0152 -157 3.5 AAACATGATTTCTGTAAAATTG
-120 3.2 TTTACTGATTTCAATCAAAACC
-79 3 CTTATTAAGCTTTCTCACGAAA
-54 3.4 TAATGGGACAGGTTCCAGATAA
Citrobacter koseri ATCC BAA-895 CKO_03259 -180 3.2 ATTTGTGCATAGTTACATCTTT
-157 3.1 AAACGTTATTTCTGTAATCTTG
-148 3.3 TTCTGTAATCTTGTTAAAATGT
-120 3.2 TTTACTGATTTCAATCAAAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00118 -155 3.2 AAATGTTATTTCTGTAAGGTTG
-118 3.2 TTTACTGATTTCAATCAAAACC
Enterobacter sp. 638 Ent638_0660 -120 3.2 TTTACTGATTTCAATCAAAACC
-77 3.1 TATTGTATTTTCTGGCGAAAAT
-68 3 TTTAGCGATACGAATATGAAAT
Erwinia amylovora ATCC 49946 EAM_0747 -198 3.3 TAAAGCGATCGGATTTAACAAT
Yersinia pestis KIM y0767 -151 4.2 AAATGTGCTGGGTTTCATGATT
-139 3.3 TTTCATGATTTCGGTCAAGGTC
-74 3.4 TTTTGAAATTGGTATTACCAAT
Serratia proteamaculans 568 Spro_4011 -132 3.1 AAATGTGCGGGTAACCTGATTT
-56 3.4 TTTTGAAATTGGTATTACCAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3789 -120 3.7 ATTGGTGATTTAGCTCAAGGTC
-55 3.4 TTTTGAAATTGGTATTACCAAT
Edwardsiella tarda EIB202 ETAE_0659 -143 3.2 TTTCATGATTTACATCAATAGT
Proteus mirabilis HI4320 PMI2046 -218 3.1 TGTTTTTAATCTTTTCTAATAA
-199 4.4 TAATGCGATCTAGTTATCAAAT
-181 4.2 AAATTTGATGAATTTATCAAAT
-158 3 ATTTGTTAAAATTTGCAGGTTT
-138 3.9 TTTTATGATTTCGCTCAACAAC
-95 3.1 CTTTGTTACTTTATTATCCATT
-89 3.1 TACTTTATTATCCATTACATTA
Position: -73
Score: 3.2
Sequence: TTATGTTAAATTATAAATATTT
Position: -57
Score: 3.7
Sequence: ATATTTAATTTTATTAAAAAAA
Position: -52
Score: 3.3
Sequence: TAATTTTATTAAAAAAAAATAA
Locus tag: BCc_133
BCc_133 -73 3.2 TTATGTTAAATTATAAATATTT
-57 3.7 ATATTTAATTTTATTAAAAAAA
-52 3.3 TAATTTTATTAAAAAAAAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lpdA
Ortholog function: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Escherichia coli str. K-12 substr. MG1655 b0116 -224 3.3 AATTGTTAACAATTTTGTAAAA
Salmonella typhimurium LT2 STM0154 -153 3.5 GTTTGTGAGGTTATTAGCGAAA
Citrobacter koseri ATCC BAA-895 CKO_03256 -95 3.3 AATTGTTAACAATTTTGTAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00120 -105 3.3 AATTGTTAACAATTTTGTAAAA
Yersinia pestis KIM y0769 -253 3.3 ATTGGTGATCTTGTTATTACTG
Serratia proteamaculans 568 Spro_4009 -246 3.6 TATGGTGATGTAATGAAAAAAG
Proteus mirabilis HI4320 PMI2044 -133 3.4 GGTTGTGAGATCTGTCATGTTA
Photorhabdus luminescens subsp. laumondii TTO1 plu3621 -131 3.9 TGTTGCGAGTTCTGTCACGTTA
Position: -98
Score: 3.9
Sequence: TATTTTTATATTTTTAAAAATT
Locus tag: BCc_178
BCc_178 -98 3.9 TATTTTTATATTTTTAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glyA
Ortholog function: serine hydroxymethyltransferase
Escherichia coli str. K-12 substr. MG1655 b2551 -229 3.8 GAATGTGATGAAGTGAAAAATT
Proteus mirabilis HI4320 PMI1867 -210 3.8 TAGCGAGATGTGCCTCAAAAAG
Photorhabdus luminescens subsp. laumondii TTO1 plu3291 -178 3.8 TAGCGTAATTTTCATTACACTA
Position: -44
Score: 3.9
Sequence: ATTTTTGATTTTTATAAATTTT
Locus tag: BCc_191
BCc_191 -44 3.9 ATTTTTGATTTTTATAAATTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroA
Ortholog function: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Escherichia coli str. K-12 substr. MG1655 b0908 -155 4.8 TTGTGTGATGCAAGCCACATTT
Salmonella typhimurium LT2 STM0978 -142 4.2 TTGTGTGACGCATGCCGCATTT
Citrobacter koseri ATCC BAA-895 CKO_02164 -171 4.6 TTGTGTGACGTAGCGCGCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00936 -145 3.7 TTGTGTGACGGCGGCCGCGTTT
Enterobacter sp. 638 Ent638_1428 -119 4.4 TTGTGTGACGGTGGACACATTT
Yersinia pestis KIM y2783 -39 3.3 TATAACGATGGCAATCTCAGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2593 -78 3.5 AAGTATGACGGGTATAAAAATG
Edwardsiella tarda EIB202 ETAE_2177 -104 3.8 TATAGTGACAGCGCTCAATAAA
Position: -112
Score: 3.6
Sequence: ATATATAATATATTACATATAT
Position: -83
Score: 3.6
Sequence: AAATTTAATAAAATTAATATTT
Locus tag: BCc_199
BCc_199 -112 3.6 ATATATAATATATTACATATAT
-83 3.6 AAATTTAATAAAATTAATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: zwf
Ortholog function: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Escherichia coli str. K-12 substr. MG1655 b1852 -208 3.9 TAACATGATCAGTGTCAGATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02367 -225 3.8 TTACATGATCAGGGTCGTATTT
Yersinia pestis KIM y2244 -231 4.1 TAATATGACCTGTGTCTAATTT
Proteus mirabilis HI4320 PMI1157 -225 3.7 AAGTATGACCTGTGTCTAACTT
Photorhabdus luminescens subsp. laumondii TTO1 plu2122 -234 4.2 TAATTTAATGTTTTTCATAAAA
Position: -40
Score: 3.7
Sequence: TTTTATTATTTTAATAATATAA
Locus tag: BCc_252
BCc_252 -40 3.7 TTTTATTATTTTAATAATATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fis
Ortholog function: DNA-binding protein Fis
Escherichia coli str. K-12 substr. MG1655 b3261 -297 4.4 AAGTGCGAGCAAGCTCACAAAA
-212 4.3 AATTGAGAACTTACTCAAATTT
Citrobacter koseri ATCC BAA-895 CKO_04673 -212 3.7 AAATGAGAAGTTACGCAAAATT
Enterobacter sp. 638 Ent638_3700 -299 4.1 AAATGGGACCCAGATCGCAAAG
Erwinia amylovora ATCC 49946 EAM_3147 -219 4 TATTGTTAACTTGCTCACAAGA
Yersinia pestis KIM y0214 -57 4.3 TAACGTGATGTTATTTATAATT
Proteus mirabilis HI4320 PMI3622 -94 3.8 TTTCGCGATTTGGTTAAACTTT
Photorhabdus luminescens subsp. laumondii TTO1 plu4089 -191 3.7 CTAAGTGATAAACTTTACCAAT
Position: -189
Score: 3.7
Sequence: TAATTTAATTTTTATTAAAAAT
Position: -33
Score: 3.7
Sequence: AACTATTATATAATTCATAAAA
Locus tag: BCc_278
BCc_278 -189 3.7 TAATTTAATTTTTATTAAAAAT
-33 3.7 AACTATTATATAATTCATAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pgk
Ortholog function: phosphoglycerate kinase
Escherichia coli str. K-12 substr. MG1655 b2926 -213 4.7 AAGTGTGATGTGAGTCAGATAA
Salmonella typhimurium LT2 STM3069 -213 5 AAATGTGATGCAGGTCAGATAA
Citrobacter koseri ATCC BAA-895 CKO_04296 -213 4.8 AAGTGTGATGCAGGTCAGATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03355 -213 4.8 AAATGTGATGTGAGTCATATAG
Enterobacter sp. 638 Ent638_3339 -215 4.5 AAATGTGACGCAAGTCATATAG
Erwinia amylovora ATCC 49946 EAM_2812 -208 4.1 TTTTGTGACGCAGATCGAAAGT
Yersinia pestis KIM y3308 -216 3.7 AATTGTGCCCTTTTTCAGGGAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3912 -194 4.1 TTTTATGACGCAGGTCACTCTT
Edwardsiella tarda EIB202 ETAE_2957 -233 4.9 AATTGTGATGCAATGCACGTTT
Proteus mirabilis HI4320 PMI0242 -253 4.4 AAATGTTAACAAGAGCACATTT
Position: -169
Score: 3.6
Sequence: TTATTTTAAGTATTTAAAATTA
Position: -105
Score: 3.7
Sequence: AAATTTAATTTTTTTTAAATAA
Locus tag: BCc_307
BCc_307 -169 3.6 TTATTTTAAGTATTTAAAATTA
-105 3.7 AAATTTAATTTTTTTTAAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybeD
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b0631 -94 3.6 AAGTGTAATTTCCGTCCCCATA
Salmonella typhimurium LT2 STM0636 -93 4.2 AAGTGTGATTTTCGTCCCCATA
-35 3.9 AGTTGTTATTTTTTTTACGTAA
Citrobacter koseri ATCC BAA-895 CKO_02527 -91 4.4 AAGTGTGATTTCCATCCCCATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00663 -97 4.4 AAGTGTGATTTCCATCCCCATA
Enterobacter sp. 638 Ent638_1166 -90 4.4 AAGTGTGATTTCCATCCCCATA
Yersinia pestis KIM y1174 -146 4.2 TATTGTGATTAATCTTATATTG
Position: -89
Score: 3.7
Sequence: TTATTTAATAAATATAAAAAAT
Position: -70
Score: 3.8
Sequence: AATTTTTATATTTATTATATAT
Locus tag: BCc_372
BCc_372 -89 3.7 TTATTTAATAAATATAAAAAAT
-70 3.8 AATTTTTATATTTATTATATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pgi
Ortholog function: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Salmonella typhimurium LT2 STM4221 -61 3.7 TTCTGTGACTGGCGTTACAATC
Citrobacter koseri ATCC BAA-895 CKO_03893 -61 4.1 TTTTGTGACTGGCGTTACAATC
Serratia proteamaculans 568 Spro_4477 -80 3.7 AAAAGAGATCATAATCACAGTC
Proteus mirabilis HI4320 PMI2754 -245 3.7 CAGTGAGATGTTAAACACAGTT
Photorhabdus luminescens subsp. laumondii TTO1 plu4379 -205 3.8 TGACGCGATGAGAATCATAAAA
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