Propagation of Fur regulog to Yersinia bercovieri ATCC 43970

Reference regulog properties
Source regulog:	Fur - Enterobacteriales
Regulator type:	Transcription factor
Regulator family:	FUR
Regulation mode:	repressor (activator)
Biological process:	Iron homeostasis
Effector:	Iron ion, (Fe2+)
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Yersinia bercovieri ATCC 43970
Orthologous TF(s)	YberA_01002945
Regulated genes	38

Built upon 656 sites [see more]

Predicted regulatory interactions in *Yersinia bercovieri ATCC 43970*
	Locus tag	Position	Score	Sequence
Position: -38 Score: 5.3 Sequence: GATATTGGTTATCATTATC Locus tag: YberA_01000032
	YberA_01000032	-38	5.3	GATATTGGTTATCATTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjjZ
Ortholog function: putative membrane protein
Escherichia coli str. K-12 substr. MG1655	b4567	-60	4.4	GCAAATGATAAAAATTATC
		-37	5.2	GATATTGGTTATCATTATC
Salmonella typhimurium LT2	STM4552	-37	5.2	GATATTGGTTATCATTATC
		-31	4.2	GGTTATCATTATCAATTCC
Citrobacter koseri ATCC BAA-895	CKO_03427	2	4.9	GCTATTGGTTATCATTATC
		8	4.1	GGTTATCATTATCGGTATC
Enterobacter sp. 638	Ent638_0529	-37	5.2	GATATTGGTTATCATTATC
		-31	4	GGTTATCATTATCATATTG
Erwinia amylovora ATCC 49946	EAM_0565	-70	4.3	CAAAGTGATAATGATTAAC
		-64	4.3	GATAATGATTAACATATGC
		-47	4.9	GCTATTGGTAATCATTATC
		-41	4.8	GGTAATCATTATCATTTAT
Yersinia pestis KIM	y3754	-4	4.9	GATATTGGTTATGATTATC
		2	5.2	GGTTATGATTATCATTATC
Serratia proteamaculans 568	Spro_0646	-39	4.7	GATATTAGTTCTCATTATC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0738	-89	5	GATATTAGTTATCATTATC
		-83	4.5	AGTTATCATTATCATTTTT
Proteus mirabilis HI4320	PMI2497	-27	5.3	AATAATGAAAATCATTATC
		-21	5.2	GAAAATCATTATCATTAAC
Photorhabdus luminescens subsp. laumondii TTO1	plu4253	-92	5.2	GATATTGGTAATCATTATC
		-86	4.7	GGTAATCATTATCATTTGT

Position: -100 Score: 4.9 Sequence: GGCATTGATAATCATTTTC Position: -94 Score: 5.2 Sequence: GATAATCATTTTCAATATC Locus tag: YberA_01000181
	YberA_01000181	-100	4.9	GGCATTGATAATCATTTTC
		-94	5.2	GATAATCATTTTCAATATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sodA
Ortholog function: manganese/iron superoxide dismutase
Escherichia coli str. K-12 substr. MG1655	b3908	-99	4.7	GGCATTGATAATCATTTTC
		-93	5	GATAATCATTTTCAATATC
Salmonella typhimurium LT2	STM4055	-99	4.7	GGCATTGATAATCATTTTC
		-93	5	GATAATCATTTTCAATATC
Citrobacter koseri ATCC BAA-895	CKO_03093	-88	4.3	GGCATTGATAAGCATTTTC
		-82	4.4	GATAAGCATTTTCAATATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04217	-88	4.3	GGCATTGATAAGCATTTTC
		-82	4	GATAAGCATTTTCAATACC
Enterobacter sp. 638	Ent638_4063	-100	4.7	GGCATTGATAATCATTTTC
		-94	5	GATAATCATTTTCAATATC
Yersinia pestis KIM	y4080	-104	4.4	AGGTTTGATAATCATTTTC
		-98	5	GATAATCATTTTCAATATC
Serratia proteamaculans 568	Spro_0081	-105	4.7	GGCATTGATAATCATTTTC
		-99	5	GATAATCATTTTCAATATC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0092	-105	4.9	AATAATCATTTTCAATATC
Proteus mirabilis HI4320	PMI3036	-95	4.6	GGATATGATAATGATTTTC
		-89	5.2	GATAATGATTTTCATTAAC
Photorhabdus luminescens subsp. laumondii TTO1	plu0075	-102	4.3	GGTATTGATAAGCATTTCC

Position: -149 Score: 4.9 Sequence: ACTAATGATAATTACTATC Position: -143 Score: 4.2 Sequence: GATAATTACTATCAATCCC Locus tag: YberA_01000301
	YberA_01000301	-149	4.9	ACTAATGATAATTACTATC
		-143	4.2	GATAATTACTATCAATCCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: exbB
Ortholog function: TonB-dependent siderophore transporter component ExbB
Escherichia coli str. K-12 substr. MG1655	b3006	-82	4.1	AGTAATGAGAACGACTATC
Salmonella typhimurium LT2	STM3159	-82	4.1	AGTAATGAGAACGACTATC
Citrobacter koseri ATCC BAA-895	CKO_04401	-97	4.1	AGTAATGAGAACGACTATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03426	-97	4.3	ACTAATGAGAACCACTATC
Enterobacter sp. 638	Ent638_3417	-97	4.3	ACTAATGAGAACCACTATC
Yersinia pestis KIM	y3495	-71	4.8	ACTAATGATAATTACTATC
Serratia proteamaculans 568	Spro_4211	-94	4.4	AATAATGAGAACTACTATC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0358	-206	4.3	AATAATGAGAACGACTATC
Proteus mirabilis HI4320	PMI0029	-170	4.8	AGTAATGATAATTACTATC
Photorhabdus luminescens subsp. laumondii TTO1	plu3941	-98	5.1	AATAATGATAATTACTATC

Position: -111 Score: 4.8 Sequence: GATAATAGTTATCATTACT Locus tag: YberA_01000379
	YberA_01000379	-111	4.8	GATAATAGTTATCATTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: viuB
Ortholog function: FAD-binding 9 siderophore-interacting domain protein
Serratia proteamaculans 568	Spro_2919	-65	4.5	GCAAACAATTCTCATTATC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2023	-72	4.4	CGAAATGATAATAGTTATC
Proteus mirabilis HI4320	PMI1437	-66	4.6	AATAGTGATAATGACTATC
		-60	5	GATAATGACTATCATTATT
Photorhabdus luminescens subsp. laumondii TTO1	plu2040	-97	5	TTTAATGATAATAATTATC
		-91	5.5	GATAATAATTATCATTTTC

Position: -65 Score: 5.2 Sequence: TTTATTGATAATCATTATC Locus tag: YberA_01000388
	YberA_01000388	-65	5.2	TTTATTGATAATCATTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fhuF
Ortholog function: ferric iron reductase involved in ferric hydroximate transport
Escherichia coli str. K-12 substr. MG1655	b4367	-122	5.1	GATAATGATAACCAATATC
		-99	4.5	GATAATTTTTATCATTTGC
		-34	4	AGCAATCATTATCATTTAG
Salmonella typhimurium LT2	STM4550	-238	4	GGAATTGATAATGATAACC
		-232	5.1	GATAATGATAACCAATATC
Citrobacter koseri ATCC BAA-895	CKO_03429	-234	4.8	GATAATGATAACCAATAGC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04821	-44	4.5	AATATCAGTAATCATTATC
		-38	4.4	AGTAATCATTATCATTTAG
Enterobacter sp. 638	Ent638_0527	-237	5.1	GATAATGATAACCAATATC
Yersinia pestis KIM	y2642	-67	4.9	GCTATTGATAATCACTATC
		-61	4.4	GATAATCACTATCATTCTG
Photorhabdus luminescens subsp. laumondii TTO1	plu4627	-100	4.3	GACAATGATAATAATAATA
		-94	5.3	GATAATAATAATAATTATC
		-88	4.9	AATAATAATTATCATAATT
		-82	4.1	AATTATCATAATTATATTT

Position: -113 Score: 4.9 Sequence: GTTAATAAATCTCATTATC Locus tag: YberA_01000398
	YberA_01000398	-113	4.9	GTTAATAAATCTCATTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yijD1
Ortholog function: putative iron permease FTR1
Citrobacter koseri ATCC BAA-895	CKO_02057	-98	5.3	TATAATGATAATAATTATC
		-92	5	GATAATAATTATCATTTGT
Yersinia pestis KIM	y2370	-47	4.1	GTTAATGTTAATAAATCTC
		-41	4.5	GTTAATAAATCTCATTATT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1510	-41	4.7	GATAATAAGAATAAATATC
		-35	4.2	AAGAATAAATATCATTTGT

Position: -195 Score: 4.5 Sequence: ACGAATGATAATAGTTATC Position: -189 Score: 4.9 Sequence: GATAATAGTTATCAATAGC Locus tag: YberA_01000518
	YberA_01000518	-195	4.5	ACGAATGATAATAGTTATC
		-189	4.9	GATAATAGTTATCAATAGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sapA
Ortholog function: ABC peptide transport periplasmic protein
Erwinia amylovora ATCC 49946	EAM_1842	-198	5.1	GTTAATAATAATCATTCTC
		-192	5.2	AATAATCATTCTCATTATC
Edwardsiella tarda EIB202	ETAE_1870	-222	4.1	TTGAATGATAATGTTTATC
		-216	4.8	GATAATGTTTATCAATATC
Proteus mirabilis HI4320	PMI1378	-131	4.7	GATAATCTTTATCATTAGC
Photorhabdus luminescens subsp. laumondii TTO1	plu2587	-141	4	ACAGATGATAATGGTTATC
		-135	4.3	GATAATGGTTATCAATACG

Position: -82 Score: 4.6 Sequence: TGAAGTGATAATTATTATC Position: -76 Score: 4.9 Sequence: GATAATTATTATCACTACC Locus tag: YberA_01000562
	YberA_01000562	-82	4.6	TGAAGTGATAATTATTATC
		-76	4.9	GATAATTATTATCACTACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sufA
Ortholog function: scaffold protein for iron-sulfur cluster assembly
Escherichia coli str. K-12 substr. MG1655	b1684	-65	4.4	TGAACTGATAATCATTATC
		-59	5.1	GATAATCATTATCACTAAC
Salmonella typhimurium LT2	STM1369	-66	4.7	TGAAGTGATAATCATTATC
		-60	5.1	GATAATCATTATCACTAAC
Citrobacter koseri ATCC BAA-895	CKO_01717	-66	4.7	TGAAGTGATAATCATTATC
		-60	5.1	GATAATCATTATCACTAAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02141	-66	4.7	TGAAGTGATAATCATTATC
		-60	5.1	GATAATCATTATCACTAAC
Enterobacter sp. 638	Ent638_1760	-67	4.4	TGAAGTGATAATCGTTATC
		-61	4.7	GATAATCGTTATCACTAAC
Yersinia pestis KIM	y1934	-129	4.5	TGAAGTGATAATTATTATC
		-123	4.8	GATAATTATTATCACTACC
Serratia proteamaculans 568	Spro_2179	-77	4.4	TGAAGTGATAATCGTTATC
		-71	4.7	GATAATCGTTATCACTAAC
Proteus mirabilis HI4320	PMI1416	-66	4.4	GATAAGGGTTATCATTACC
		-60	4	GGTTATCATTACCATTAGA
Photorhabdus luminescens subsp. laumondii TTO1	plu2622	-87	4.4	GATAAAGGTTATCATTACC
		-81	4.3	GGTTATCATTACCATTATA

Position: -56 Score: 4.7 Sequence: GCAGATGATAATTATTATC Position: -50 Score: 4.8 Sequence: GATAATTATTATCACATTC Locus tag: YberA_01000570
	YberA_01000570	-56	4.7	GCAGATGATAATTATTATC
		-50	4.8	GATAATTATTATCACATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemP
Ortholog function: hemin uptake protein
Escherichia coli str. K-12 substr. MG1655	b1705	-47	4.1	AATATTGATAATAAGAATC
		-41	4.6	GATAATAAGAATCATTGTT
Salmonella typhimurium LT2	STM1346	-47	4.5	ATTATTGATAATAATAATC
		-41	4.7	GATAATAATAATCATTGTG
Citrobacter koseri ATCC BAA-895	CKO_01729	-50	4.7	AATATTGATAATAATAATC
		-44	4.9	GATAATAATAATCATTGTT
Citrobacter koseri ATCC BAA-895	CKO_03737	14	4.1	CTTGATGATAATCATTCTT
		20	4.8	GATAATCATTCTTGTTATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02163	-10	4.8	ATTATTGATAATGATTATC
		-4	5.1	GATAATGATTATCATTGTT
Enterobacter sp. 638	Ent638_1742	-50	4.2	TTTGTTGATAATGATTATC
		-44	5.1	GATAATGATTATCATTGTT
Serratia proteamaculans 568	Spro_2170	-68	4	TCACATGATAATGATTCTC
		-62	4.6	GATAATGATTCTCACTTTG
Edwardsiella tarda EIB202	ETAE_1796	-10	4.1	TTATACGATAATGATTATC
		-4	5.1	GATAATGATTATCATTAAG
Proteus mirabilis HI4320	PMI1424	-52	5.1	GATAACGATAATGATTATC
		-46	5.4	GATAATGATTATCATAATC
		-40	4.4	GATTATCATAATCATAACC
Photorhabdus luminescens subsp. laumondii TTO1	plu2631	-54	4.7	TATAACGATAATAATTCTC
		-48	4.6	GATAATAATTCTCACTATG

Position: -280 Score: 3.8 Sequence: GGCAATAATATTATTTTTC Position: -251 Score: 4 Sequence: TTTATTAATTATTACTCGC Position: -228 Score: 4.4 Sequence: TTAAATAAGAATCATTCTT Position: -222 Score: 3.7 Sequence: AAGAATCATTCTTTTTACT Position: -195 Score: 4.6 Sequence: GATAATGTTAATGATTCTT Position: -189 Score: 4.4 Sequence: GTTAATGATTCTTATAATA Position: -186 Score: 3.5 Sequence: AATGATTCTTATAATAATT Position: -183 Score: 3.9 Sequence: GATTCTTATAATAATTCAC Position: -123 Score: 3.6 Sequence: TAAATTATTTATTGTTTTT Position: -116 Score: 3.4 Sequence: TTTATTGTTTTTCACTAAT Locus tag: YberA_01000637
	YberA_01000637	-280	3.8	GGCAATAATATTATTTTTC
		-251	4	TTTATTAATTATTACTCGC
		-228	4.4	TTAAATAAGAATCATTCTT
		-222	3.7	AAGAATCATTCTTTTTACT
		-195	4.6	GATAATGTTAATGATTCTT
		-189	4.4	GTTAATGATTCTTATAATA
		-186	3.5	AATGATTCTTATAATAATT
		-183	3.9	GATTCTTATAATAATTCAC
		-123	3.6	TAAATTATTTATTGTTTTT
		-116	3.4	TTTATTGTTTTTCACTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ftnA
Ortholog function: ferritin
Escherichia coli str. K-12 substr. MG1655	b1905	-127	3.4	GgTAATGcgttTtATTccC
		-121	3	GcgttTtATtccCATTcgt
Salmonella typhimurium LT2	STM1935	-100	4	AATAATTAAATTTAATATT
Citrobacter koseri ATCC BAA-895	CKO_01042	-97	4.3	AATAATTAAATTTATTATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02402	-161	4	ATAAATTAAAAGCATTCTC
		-155	3.8	TAAAAGCATTCTCATTTAT
Enterobacter sp. 638	Ent638_2486	-103	3.7	TATTTTAATAAATAATATC
		-97	3.6	AATAAATAATATCTTTATT
Erwinia amylovora ATCC 49946	EAM_2940	-131	4.4	TGGAATGATTATCAATTAC
Yersinia pestis KIM	y2524	-93	4.4	AATAATGTGAATGATTATC
		-87	4.1	GTGAATGATTATCATGATG
Serratia proteamaculans 568	Spro_1942	-174	4.5	GAAAATAGTTATCATAATT
		-168	4	AGTTATCATAATTATTTAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2473	-158	4.6	TTAAATGATAATGAATATC
		-152	4.8	GATAATGAATATCAATAGC
Proteus mirabilis HI4320	PMI1007	-184	4.7	GTTAATGATAATCAATTCC
		-178	4.1	GATAATCAATTCCATTAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu2689	-147	4.4	TTAAATGAGATTCATTTTC
		-141	4.4	GAGATTCATTTTCATTTTT

Position: -48 Score: 4.1 Sequence: GCCAATGATATTGATAATC Position: -42 Score: 5.6 Sequence: GATATTGATAATCATTTTC Position: -36 Score: 4.8 Sequence: GATAATCATTTTCATTTGA Locus tag: YberA_01000692
	YberA_01000692	-48	4.1	GCCAATGATATTGATAATC
		-42	5.6	GATATTGATAATCATTTTC
		-36	4.8	GATAATCATTTTCATTTGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sitA
Ortholog function: iron ABC transporter, periplasmic substrate-binding protein
Salmonella typhimurium LT2	STM2861	-99	4.5	GCAAATAAGAATTATTTTC
		-93	4.2	AAGAATTATTTTCATTTAT
Citrobacter koseri ATCC BAA-895	CKO_04090	-84	4.5	GTAAATAAGAATTATTTTC
		-78	4.2	AAGAATTATTTTCATTTAT
Citrobacter koseri ATCC BAA-895	CKO_00940	-111	4.1	GATAAAGATAATTTTTCTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03078	-99	4.5	GCAAATAAGAATTATTTTC
		-93	4.2	AAGAATTATTTTCATTTAT
Enterobacter sp. 638	Ent638_1111	-98	4.9	TTTAATGATAATTATTTTC
		-92	4.5	GATAATTATTTTCATTTAA
Yersinia pestis KIM	y1897	-39	5.2	GGTATTGATAATCATTTTC
		-33	4.7	GATAATCATTTTCATTTGT
Serratia proteamaculans 568	Spro_2133	-41	5.4	GATATTGATAATCATTTTC
		-35	4.6	GATAATCATTTTCATTTGA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2392	-53	5.1	GATATTGATAATTATTCTC
Proteus mirabilis HI4320	PMI1027	-63	4.2	TGAAATGATATTGATAATC
		-57	5.5	GATATTGATAATCATTATC
Photorhabdus luminescens subsp. laumondii TTO1	plu2672	-49	5.2	GATATTGATAATCGTTATC
		-43	4.5	GATAATCGTTATCATATAC

Position: -195 Score: 4 Sequence: GATAGTTATTATCAATTAG Locus tag: YberA_01001115
	YberA_01001115	-195	4	GATAGTTATTATCAATTAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: dps
Ortholog function: DNA protection ferritin-like protein
Salmonella typhimurium LT2	STM0831	-188	4.4	TAAAATGAGAATTATTACC
		-136	4	TTTAATCAAAATAAATATT
Citrobacter koseri ATCC BAA-895	CKO_02310	-188	4.5	GTGAATGAGAATTATTAAC
		-137	4.3	TTTAATCATTTTCAATATT
Enterobacter sp. 638	Ent638_1299	-118	4.1	TAACATTATTATCACTATT

Position: -159 Score: 4.8 Sequence: CTTATTGATAATTATTATC Position: -153 Score: 4.6 Sequence: GATAATTATTATCGTTTGA Locus tag: YberA_01001229
	YberA_01001229	-159	4.8	CTTATTGATAATTATTATC
		-153	4.6	GATAATTATTATCGTTTGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yiuB
Ortholog function: ferric-enterobactin ABC-transporter, permease component
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00519	-54	4.1	GAGAATAATTCTCAGAATC
Enterobacter sp. 638	Ent638_0575	-131	4.4	TCAATTGATAAGCATTATC
Erwinia amylovora ATCC 49946	EAM_2216	-61	4.5	GATAAGTATTATCATTTGC
		-10	4	GGTATTGATAATGAGTTTA
Yersinia pestis KIM	y2874	-45	4.3	CTTATTGATAAGTATTATC
		-39	4.5	GATAAGTATTATCATTTGC
Serratia proteamaculans 568	Spro_3222	-108	4.2	ATGATTGATAAGTATTATC
		-102	4.2	GATAAGTATTATCGTTTGC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3242	-77	4.2	ATATACGATAATAATTATC
		-71	4.7	GATAATAATTATCAAACTC
Edwardsiella tarda EIB202	ETAE_1965	-75	4.7	GCTAATAATTTTCATTTAC
		-53	4.5	AATATTGATATTGATTAGC
		-47	4.8	GATATTGATTAGCGTTATC
Proteus mirabilis HI4320	PMI0229	-96	4.8	GATAATGGTAACTATTATC
		-90	4.3	GGTAACTATTATCGTTATA
Photorhabdus luminescens subsp. laumondii TTO1	plu2852	-78	4.3	CATATTGATAAGTATTCTC
		-72	4	GATAAGTATTCTCATTTGT

Position: -64 Score: 4.4 Sequence: AGTAATGCAAATCATTAGC Position: -58 Score: 4.2 Sequence: GCAAATCATTAGCGTTAGC Locus tag: YberA_01001674
	YberA_01001674	-64	4.4	AGTAATGCAAATCATTAGC
		-58	4.2	GCAAATCATTAGCGTTAGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fatB
Ortholog function: iron ABC transporter, substrate-binding protein
Yersinia pestis KIM	y4043	-26	4.8	GGTAATAAAAATCATTAGC
		-20	4.2	AAAAATCATTAGCATTACT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2564	-86	4.2	GCGAATGATAATTAAATTC
		-80	4.1	GATAATTAAATTCTTTATT
Proteus mirabilis HI4320	PMI2957	-121	4.1	GTGAATTAGTATCATTACT

Position: -95 Score: 5 Sequence: AAAAATGATAATTAATTTC Position: -89 Score: 5 Sequence: GATAATTAATTTCATTATC Locus tag: YberA_01001707
	YberA_01001707	-95	5	AAAAATGATAATTAATTTC
		-89	5	GATAATTAATTTCATTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yddB
Ortholog function: TonB-dependent receptor
Escherichia coli str. K-12 substr. MG1655	b1495	-4	4.4	GCTAATGATAACCATTCCC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0878	-269	4.4	TAAAACGATTATCATTTGT
		-263	4.1	GATTATCATTTGTATTATT
Proteus mirabilis HI4320	PMI3706	-115	4.2	GATATTGCTTATTATTAAT
		-75	4.2	AATATTGATTATAAAAATT

Position: -124 Score: 4.9 Sequence: CAGAATGATAATCACTATC Position: -118 Score: 4.3 Sequence: GATAATCACTATCGTTTTA Locus tag: YberA_01001829
	YberA_01001829	-124	4.9	CAGAATGATAATCACTATC
		-118	4.3	GATAATCACTATCGTTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yijD
Ortholog function: iron permease FTR1
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01045	-76	5	TGTAATGATAATCACTATC
		-70	4.2	GATAATCACTATCATAAAT
Enterobacter sp. 638	Ent638_1545	-76	4.9	CGTAATGATAATCACTATC
Erwinia amylovora ATCC 49946	EAM_2059	-80	4.6	GATAATGATAATCCCTATC
Yersinia pestis KIM	y2452	-84	4.4	CAGAATGATAATCACAATC
		-78	4.3	GATAATCACAATCGTTTTA
Serratia proteamaculans 568	Spro_2929	-109	4.8	CAGAATGATAATCACTATC

Position: -234 Score: 4.3 Sequence: CACTTTGATAATTATTATC Position: -228 Score: 4.4 Sequence: GATAATTATTATCGTTTGG Locus tag: YberA_01002226
	YberA_01002226	-234	4.3	CACTTTGATAATTATTATC
		-228	4.4	GATAATTATTATCGTTTGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: fhuC
Ortholog function: iron-hydroxamate transporter ATP-binding subunit
Escherichia coli str. K-12 substr. MG1655	b0151	-57	4.4	CTTTATAATAATCATTCTC
		-51	4.5	AATAATCATTCTCGTTTAC
Salmonella typhimurium LT2	STM0192	-56	4.8	GGTTATAATAATAATTATC
		-50	4.8	AATAATAATTATCGTTTAC
Citrobacter koseri ATCC BAA-895	CKO_03217	-57	4	GGTCATAAGAATAATTCTC
		-51	4.3	AAGAATAATTCTCGTTTAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00166	-56	4	CGTCATAATAATAATTCTC
		-50	4.5	AATAATAATTCTCGTTTAC
Enterobacter sp. 638	Ent638_0691	-58	4.3	GGTCATAATAATAATTCTC
		-52	4.5	AATAATAATTCTCGTTTAC
Yersinia pestis KIM	y0796	-157	4.4	CGTTTTAATAATCATTATC
		-151	4.7	AATAATCATTATCGTTACC
Serratia proteamaculans 568	Spro_3978	-60	4.7	GCTTATAATAATTATTATC
		-54	4.7	AATAATTATTATCGTTTAC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3312	-123	4.3	CTTTATCGTAATCATTATC
		-117	4.5	CGTAATCATTATCGTTCTC

Position: -244 Score: 4.2 Sequence: GATAGTTATTGTGATTATC Position: -238 Score: 4.5 Sequence: TATTGTGATTATCATTTGC Locus tag: YberA_01002331
	YberA_01002331	-244	4.2	GATAGTTATTGTGATTATC
		-238	4.5	TATTGTGATTATCATTTGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: PMI3708
Ortholog function: ECF-family sigma factor
Proteus mirabilis HI4320	PMI3708	-115	4.2	GATATTGCTTATTATTAAT
		-75	4.2	AATATTGATTATAAAAATT

Position: -337 Score: 4.3 Sequence: AAAAATAAGAATAAATATT Locus tag: YberA_01002334
	YberA_01002334	-337	4.3	AAAAATAAGAATAAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yddB
Ortholog function: TonB-dependent receptor
Escherichia coli str. K-12 substr. MG1655	b1495	-4	4.4	GCTAATGATAACCATTCCC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0878	-269	4.4	TAAAACGATTATCATTTGT
		-263	4.1	GATTATCATTTGTATTATT
Proteus mirabilis HI4320	PMI3706	-115	4.2	GATATTGCTTATTATTAAT
		-75	4.2	AATATTGATTATAAAAATT

Position: -176 Score: 4.8 Sequence: GATAAAGATAATAATTCTC Position: -170 Score: 4.6 Sequence: GATAATAATTCTCATTGTA Locus tag: YberA_01002339
	YberA_01002339	-176	4.8	GATAAAGATAATAATTCTC
		-170	4.6	GATAATAATTCTCATTGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: foxA
Ortholog function: TonB-dependent siderophore receptor
Salmonella typhimurium LT2	STM0364	-26	4.5	GGTAATAATTCTTATTTAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02304	-98	4.2	AATAATAATTCGCATTACT
Enterobacter sp. 638	Ent638_0493	-45	4.7	GGTAATAATTCTTATTAAC
Erwinia amylovora ATCC 49946	EAM_0358	-123	4.4	AAAAAAGATAATAATTCTC
		-117	5	GATAATAATTCTCATTTAC
Serratia proteamaculans 568	Spro_2736	-140	4.9	GATAAAGATAATAATTATC
		-134	5.2	GATAATAATTATCATTAAT

Position: 0 Score: 4.7 Sequence: ATGATTGATAATAATTATC Position: 6 Score: 4.7 Sequence: GATAATAATTATCATACTG Position: 24 Score: 4.9 Sequence: GATACTGATTATCATTACC Locus tag: YberA_01002346
	YberA_01002346	0	4.7	ATGATTGATAATAATTATC
		6	4.7	GATAATAATTATCATACTG
		24	4.9	GATACTGATTATCATTACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemP
Ortholog function: hemin uptake protein
Escherichia coli str. K-12 substr. MG1655	b1705	-47	4.1	AATATTGATAATAAGAATC
		-41	4.6	GATAATAAGAATCATTGTT
Salmonella typhimurium LT2	STM1346	-47	4.5	ATTATTGATAATAATAATC
		-41	4.7	GATAATAATAATCATTGTG
Citrobacter koseri ATCC BAA-895	CKO_01729	-50	4.7	AATATTGATAATAATAATC
		-44	4.9	GATAATAATAATCATTGTT
Citrobacter koseri ATCC BAA-895	CKO_03737	14	4.1	CTTGATGATAATCATTCTT
		20	4.8	GATAATCATTCTTGTTATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02163	-10	4.8	ATTATTGATAATGATTATC
		-4	5.1	GATAATGATTATCATTGTT
Enterobacter sp. 638	Ent638_1742	-50	4.2	TTTGTTGATAATGATTATC
		-44	5.1	GATAATGATTATCATTGTT
Serratia proteamaculans 568	Spro_2170	-68	4	TCACATGATAATGATTCTC
		-62	4.6	GATAATGATTCTCACTTTG
Edwardsiella tarda EIB202	ETAE_1796	-10	4.1	TTATACGATAATGATTATC
		-4	5.1	GATAATGATTATCATTAAG
Proteus mirabilis HI4320	PMI1424	-52	5.1	GATAACGATAATGATTATC
		-46	5.4	GATAATGATTATCATAATC
		-40	4.4	GATTATCATAATCATAACC
Photorhabdus luminescens subsp. laumondii TTO1	plu2631	-54	4.7	TATAACGATAATAATTCTC
		-48	4.6	GATAATAATTCTCACTATG

Position: 6 Score: 3.9 Sequence: CTTAATGATAAGGAGTATC Locus tag: YberA_01002465
	YberA_01002465	6	3.9	CTTAATGATAAGGAGTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfr
Ortholog function: bacterioferrin
Yersinia pestis KIM	y3988	-332	3.9	tgaAATaAaAcTCATTcTt
		-326	3.6	aAaAcTcATtcTtATTtaC

Position: -10 Score: 4.8 Sequence: CGAAATGATAATGATTATC Position: -4 Score: 5.1 Sequence: GATAATGATTATCATACGC Locus tag: YberA_01002620
	YberA_01002620	-10	4.8	CGAAATGATAATGATTATC
		-4	5.1	GATAATGATTATCATACGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: Spro_1015
Ortholog function: iron(III) ABC transporter, periplasmic protein
Yersinia pestis KIM	y3342	-41	4.2	ACAAACGATTTTGATTATC
		-35	4.6	GATTTTGATTATCATTCGC
Serratia proteamaculans 568	Spro_1015	-52	4.3	GCTAATGAGAGTGATTATC

Position: -337 Score: 4 Sequence: ACAAGTGATAATTACTCTC Locus tag: YberA_01002681
	YberA_01002681	-337	4	ACAAGTGATAATTACTCTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: iron-containing aldehyde-alcohol dehydrogenase
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02199	-332	4	TTTAATGCTAATCGTTTTT
		-326	3.2	GCTAATCGTTTTTTTAATT
Yersinia pestis KIM	y2023	-339	5	GATAATGACAATCATTCTC
		-333	3.7	GAcAATcATtcTCAaaAaa
Serratia proteamaculans 568	Spro_2704	-330	3.9	GTTATCAAGAATGATTCTC
		-324	4.2	AAGAATGATTCTCAAAAAC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2326	-368	4.5	CCTAATGATATTGATTATC
		-362	5.2	GATATTGATTATCAATATC
Edwardsiella tarda EIB202	ETAE_1508	-317	4	aAagATGAgAtTCATTcTC
		-311	4.3	GAgAtTcATtcTCATTAaa
Proteus mirabilis HI4320	PMI1486	-300	4.5	GTAATTAATTATCATTACC
		-294	4	AATTATCATTACCATTTAA
Photorhabdus luminescens subsp. laumondii TTO1	plu2496	-191	3.9	ccaAtcaATAATaATTATC
		-185	4.4	AATAATAATTATCACTGAC

Position: 6 Score: 4.2 Sequence: ACTATTGATAATCACTCTG Locus tag: YberA_01002687
	YberA_01002687	6	4.2	ACTATTGATAATCACTCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: oppD
Ortholog function: oligopeptide ABC transporter, ATP-binding protein
Escherichia coli str. K-12 substr. MG1655	b1246	-245	4.7	GGTAATGAGAATAATTAAC
Citrobacter koseri ATCC BAA-895	CKO_01323	-247	4.3	GGTGATGAGAATTATTTTC
		-241	4	GAGAATTATTTTCAATAAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02194	-216	4.4	GCAAATGAGAATTATTTTT
Enterobacter sp. 638	Ent638_2299	-247	4	GTAGATGAGAATGATTTTC

Position: -45 Score: 5 Sequence: TATAATGATAATAGTTATC Locus tag: YberA_01002912
	YberA_01002912	-45	5	TATAATGATAATAGTTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: gpmA
Ortholog function: phosphoglyceromutase 1
Escherichia coli str. K-12 substr. MG1655	b0755	-47	5	TATAATGAGAATTATTATC
		-41	4.7	GAGAATTATTATCATTAAA
Salmonella typhimurium LT2	STM0772	-47	5	TATAATGAGAATTATTATC
		-41	4.5	GAGAATTATTATCATTACA
Citrobacter koseri ATCC BAA-895	CKO_02381	-46	5	TATAATGAGAATTATTATC
		-40	4.5	GAGAATTATTATCATTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00768	-96	4.6	TATAATGAGAATAGTTATC
Enterobacter sp. 638	Ent638_1246	-164	4.7	TATAATGAGAATTGTTATC
		-158	4.1	GAGAATTGTTATCATTCAA
Yersinia pestis KIM	y3048	-103	5.3	TATAATGATAATAATTATC
		-97	4.6	GATAATAATTATCATTGAA
Serratia proteamaculans 568	Spro_1288	-51	4.9	TATAATGATTTTCGTTATC
Edwardsiella tarda EIB202	ETAE_2569	-49	4.6	CATGATGATAATAATTATC
		-43	5.3	GATAATAATTATCATTATA

Position: -139 Score: 4.3 Sequence: GCGCTTGATAATTATTATC Position: -133 Score: 4.9 Sequence: GATAATTATTATCATTTAG Locus tag: YberA_01003527
	YberA_01003527	-139	4.3	GCGCTTGATAATTATTATC
		-133	4.9	GATAATTATTATCATTTAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: mntH
Ortholog function: Mn2+/Fe2+ transporter, NRAMP family
Escherichia coli str. K-12 substr. MG1655	b2392	-68	4.7	GAATTTGATAATCATTCTC
		-62	4.2	GATAATCATTCTCGTTTGG
Salmonella typhimurium LT2	STM2408	-68	4.5	GCACTTGATAATCATTATC
		-62	4.8	GATAATCATTATCAATAAA
Citrobacter koseri ATCC BAA-895	CKO_00404	-50	4.3	GCACTTGATAATCATTCTC
		-44	4.5	GATAATCATTCTCAATAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02743	-68	4.3	GAACTTGATAATCATTCGC
		-62	4.3	GATAATCATTCGCATTTTG
Enterobacter sp. 638	Ent638_2926	-67	4.8	GATCTTGATAATCATTCTC
		-61	4.8	GATAATCATTCTCATTTTG
Yersinia pestis KIM	y1500	-78	4	GCGCTTGATAATTATTCTC
		-72	4.6	GATAATTATTCTCATTTAA
Serratia proteamaculans 568	Spro_3415	-66	4.3	GCACTTGATAATTATTATC
		-60	5.2	GATAATTATTATCATTTAC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0843	-63	4.5	GCACTTGATAATCATTATC
		-57	5.2	GATAATCATTATCATTTTT
Edwardsiella tarda EIB202	ETAE_1142	-134	4.5	GCAGTTGATAATCATTATC

Position: -97 Score: 4.8 Sequence: GAAAACGATTATTACTATC Position: -91 Score: 4.6 Sequence: GATTATTACTATCATTATT Locus tag: YberA_01003576
	YberA_01003576	-97	4.8	GAAAACGATTATTACTATC
		-91	4.6	GATTATTACTATCATTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: ferrous iron transport protein A
Escherichia coli str. K-12 substr. MG1655	b3408	-138	3.4	GcTgATagaAAcCATTcTC
		-132	4.5	AGAAACCATTCTCATTATC
Salmonella typhimurium LT2	STM3505	-140	3.5	GAagATagaAAcCATTcTC
		-133	4.5	AGAAACCATTCTCATTATC
Citrobacter koseri ATCC BAA-895	CKO_04830	-139	4.1	GATGATAAAAACCATTCTC
		-133	4.7	AAAAACCATTCTCATTATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03778	-133	4.1	GATGATAAAAACCATTCTC
		-127	4.7	AAAAACCATTCTCATTATC
Enterobacter sp. 638	Ent638_3821	-62	4.5	AGAAACCATTCTCATTATC
Yersinia pestis KIM	y3912	-118	4.1	GAGCATGAAAATAATTCTC
		-112	4.4	GAAAATAATTCTCAGTATT
Serratia proteamaculans 568	Spro_4628	-155	4.3	GAATACGATAATGATTCTC
		-149	4.9	GATAATGATTCTCACTATT
Edwardsiella tarda EIB202	ETAE_3283	-163	4.3	GAAAACGATTATCAGTTTT
		-157	4.1	GATTATCAGTTTTATTATA
Proteus mirabilis HI4320	PMI2920	-138	4	AAAGATGGTTATAATTCTC
		-132	4.3	GGTTATAATTCTCATTTGC
		-59	4.8	GTTAATAATTATCAGTATC
		-53	4.6	AATTATCAGTATCATTATT
Photorhabdus luminescens subsp. laumondii TTO1	plu0209	-244	4	AATGTTGGTTATTATTCTC
		-238	4.2	GGTTATTATTCTCATTTGC

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of Fur regulog to Yersinia bercovieri ATCC 43970

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --