Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Yersinia bercovieri ATCC 43970

Reference regulog properties
Source regulog: Crp - Enterobacteriales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia bercovieri ATCC 43970
Orthologous TF(s) YberA_01001475
Regulated genes 195
Built upon 2301 sites [see more]
Predicted regulatory interactions in Yersinia bercovieri ATCC 43970
Locus tag Position Score Sequence
Position: -187
Score: 3.3
Sequence: AAAATTAAAAGTGTTCAAAAAA
Position: -143
Score: 4.4
Sequence: TGGCGTAATCAAGATCACATTT
Locus tag: YberA_01000010
YberA_01000010 -187 3.3 AAAATTAAAAGTGTTCAAAAAA
-143 4.4 TGGCGTAATCAAGATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lsrR
Ortholog function: LsrR, transcriptional repressor of lsr operon
Escherichia coli str. K-12 substr. MG1655 b1512 -87 4.1 AACTGTGGTTGCCATCACAGAT
Salmonella typhimurium LT2 STM4073 -161 3.6 AACTCTCATCCAGATCACGTTT
-92 4 TTTTGTGGCGTTAATCACGGTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03508 -75 3.7 TTTTGCCAGTCGGCTCACACTT
Enterobacter sp. 638 Ent638_3537 -122 3.4 TTTATTGATTAGGATCCAATTC
Photorhabdus luminescens subsp. laumondii TTO1 plu3142 -137 4.3 AATTGTGATCTTGGCAATATTT
Position: -92
Score: 3.3
Sequence: TTCAGTTATTTTCAGCAGATTT
Locus tag: YberA_01000011
YberA_01000011 -92 3.3 TTCAGTTATTTTCAGCAGATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydeV
Ortholog function: putative kinase
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03509 -75 3.7 TTTTGCCAGTCGGCTCACACTT
Enterobacter sp. 638 Ent638_3538 -122 3.4 TTTATTGATTAGGATCCAATTC
Serratia proteamaculans 568 Spro_1382 -104 3.5 TTTTGCAGCACAGTTCACAAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu3141 -137 4.3 AATTGTGATCTTGGCAATATTT
Position: -149
Score: 4.8
Sequence: TTCTGTGACCATCATCACAATA
Locus tag: YberA_01000045
YberA_01000045 -149 4.8 TTCTGTGACCATCATCACAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nupC2
Ortholog function: Na+ dependent nucleoside transporter
Yersinia pestis KIM y3744 -154 3.8 CTTTGTCAATAACCTCACATAT
-115 5.5 TAATGTGATTATGATCACATTT
Serratia proteamaculans 568 Spro_0659 -181 3.9 AACCGTGACGCATGTCACGTAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0473 -182 4.9 AATTGTGACGAAGATCACTTTT
Edwardsiella tarda EIB202 ETAE_0482 -232 4.9 TGATGTGATATGCATCACTTTT
Proteus mirabilis HI4320 PMI2418 -180 5.2 TAGTGTGATTTAGATCTCATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu0519 -178 5.5 TTGTGTGATTCACATCACATTT
Position: -346
Score: 5.5
Sequence: TTTTGTGATTCCAATCACATAT
Position: -294
Score: 4
Sequence: TAGTGTGAAATTGAACACACCT
Locus tag: YberA_01000046
YberA_01000046 -346 5.5 TTTTGTGATTCCAATCACATAT
-294 4 TAGTGTGAAATTGAACACACCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoC
Ortholog function: 2-deoxyribose-5-phosphate aldolase
Escherichia coli str. K-12 substr. MG1655 b4381 -149 4.6 TTATTTGAACCAGATCGCATTA
-96 4.5 AATTGTGATGTGTATCGAAGTG
Salmonella typhimurium LT2 STM4567 -133 4.9 TAATTTGATTCAGATCTCATTA
-80 4.2 AACTGTGATGTATATCGAAGTG
Citrobacter koseri ATCC BAA-895 CKO_03410 -134 4.2 TTATTTGAAGTGGATCTCGTTA
-81 4.2 AACTGTGATGTATATCGAAGTG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04837 -158 5.2 ATTTGTGATTTTAATCACGTTA
-105 3.7 AACTGTGATGAATGTCGAAGTG
Enterobacter sp. 638 Ent638_0541 -151 4.6 AAATTTGAAGTGGATCTCATTA
-98 3.7 AACTGTGATGAATGTCGAAGTG
Erwinia amylovora ATCC 49946 EAM_0615 -233 4.6 TGATGTGATAATTCTAACATTA
Yersinia pestis KIM y3743 -169 3.7 TGCGGTGAGATGGATCTCAATT
Serratia proteamaculans 568 Spro_0660 -262 4.6 ATTTGTGAACGATATCGCGTTA
-240 5.5 TTTTGTGATGGTCTTCACATAT
-188 3.8 TAGTGTGACTGTGAACGCGAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0727 -282 4.4 AAGTGTGAATGAATGCACAAAA
Proteus mirabilis HI4320 PMI2416 -267 4.4 ATATGTGAGTTACTTCGCAACT
-135 5.6 TTTTGTGATTCTGATCACAATT
-83 4.5 TATTGTGACAGAAAGCACATCT
Position: -239
Score: 3.9
Sequence: TTTTGTGACACCCCGAACCATA
Position: -160
Score: 4
Sequence: TAATGTGATTGATATGGCAATC
Locus tag: YberA_01000083
YberA_01000083 -239 3.9 TTTTGTGACACCCCGAACCATA
-160 4 TAATGTGATTGATATGGCAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nhaA
Ortholog function: Na+/H+ antiporter NhaA type
Salmonella typhimurium LT2 STM0039 -97 3.7 AAACGAGCTATTCATCATATAT
Yersinia pestis KIM y3704 -147 4.1 AAATGTGATATGCGTTATCAAT
Serratia proteamaculans 568 Spro_0694 -120 4.7 AAGTGTGATATAAATCGCTTAT
Proteus mirabilis HI4320 PMI0011 -110 3.9 ATAAGCGATTGAGATCGAAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0587 -122 4.4 TATTGAGATGTAGATCATCAAT
Position: -57
Score: 3.6
Sequence: AATCGTGAGCGAAAACGAACAT
Locus tag: YberA_01000116
YberA_01000116 -57 3.6 AATCGTGAGCGAAAACGAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpD
Ortholog function: glycerol-3-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655 b3426 -116 4.4 TAATGTTATACATATCACTCTA
Salmonella typhimurium LT2 STM3526 -116 4.4 TAATGTTATACATATCACTCTA
Citrobacter koseri ATCC BAA-895 CKO_04845 -116 4.5 TAATGTTATATGTATCACTCTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03792 -119 3.7 ATATGTTACACCCATCACTTCA
-58 3.7 TATAGTGAGCGATATCGAGCAT
Enterobacter sp. 638 Ent638_3835 -116 4.4 TTATGTTATCTCTATCACTCAA
-55 4 TATTATGAGCGATATCGAACAT
Erwinia amylovora ATCC 49946 EAM_3265 -124 4 AGACGTTATCGGCATCACGCAT
Yersinia pestis KIM y3891 -129 4.4 AAATGTTACCTCCATCACGCAT
Serratia proteamaculans 568 Spro_4642 -129 3.6 AACTGTTACCTCTATCACGCCT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4141 -144 4.3 TAATGTGACAACTATCATCATA
-124 4.4 TATTGTTAGCTTCATCACGCAT
Edwardsiella tarda EIB202 ETAE_3312 -124 4.3 TTGTGTTATCCGCATCGCGTAA
Proteus mirabilis HI4320 PMI2930 -129 4.4 AATTGTTATTTATATCACGCAG
Position: -293
Score: 4.6
Sequence: AATTTTGATCTCTATCTCAGAA
Position: -223
Score: 4.1
Sequence: TATCATGATACCGGTAACAAAT
Position: -199
Score: 4.2
Sequence: CGGTGTGACTTTTATCACATAG
Locus tag: YberA_01000127
YberA_01000127 -293 4.6 AATTTTGATCTCTATCTCAGAA
-223 4.1 TATCATGATACCGGTAACAAAT
-199 4.2 CGGTGTGACTTTTATCACATAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntT
Ortholog function: gluconate transporter
Yersinia pestis KIM y3875 -217 4 TATGTTGATCTCTATCTCAGAA
-147 4.1 TATCATGATACCGGTAACAAAT
-123 4.6 AGATGTGACTTTTATCACAACA
Serratia proteamaculans 568 Spro_4651 -243 4.2 AAGTTTGATCTCTATCCCAGAA
-173 3.8 TATCATGATACCGGTAACAATG
-147 3.7 TGCGGTGATATTGATCGCGATA
Position: -325
Score: 3.7
Sequence: CAATTATATTTGCATCACAAAT
Position: -151
Score: 3.9
Sequence: TTTAGTGATCATCGTCAAAACA
Position: -126
Score: 4.2
Sequence: TGTTGTGATCCGTGAAACACTT
Locus tag: YberA_01000138
YberA_01000138 -325 3.7 CAATTATATTTGCATCACAAAT
-151 3.9 TTTAGTGATCATCGTCAAAACA
-126 4.2 TGTTGTGATCCGTGAAACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uspA3
Ortholog function: Universal stress protein A
Enterobacter sp. 638 Ent638_3909 -195 3.8 AAAGTCGATCGGGTTCACGTTT
Yersinia pestis KIM y3859 -151 3.6 ATTAGTGATCATTGTCAAAACC
Serratia proteamaculans 568 Spro_4691 -123 4 CAGTGTGATCGCCTCAACATAT
Proteus mirabilis HI4320 PMI3009 -290 3.6 AGTTGTTCGCTTTTTCAAAAAA
-113 3.8 AGTTGTGATCAAGGCAACATCT
Position: -70
Score: 3.4
Sequence: TATTTTTATAAAAATAATAGTT
Locus tag: YberA_01000139
YberA_01000139 -70 3.4 TATTTTTATAAAAATAATAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gdhA
Ortholog function: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Escherichia coli str. K-12 substr. MG1655 b1761 -106 3.5 TTTCTTGCTTACCGTCACATTC
Salmonella typhimurium LT2 STM1299 -107 3.6 TTTCTTGCTTACCGTCACATTG
-55 3.6 TATTCTGATAAAACGCAAATAC
Citrobacter koseri ATCC BAA-895 CKO_01789 -107 3.4 TTTCTTGCTTACCGTCACACTG
Enterobacter sp. 638 Ent638_1685 -110 3.3 AATTTTCACTTGCCTCGCAAAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0051 -234 3.6 TTTTGTTATATAACAAAAACTT
Proteus mirabilis HI4320 PMI3008 -195 3.4 AATCCTGATTTTATTAGCCTTT
-88 3.5 AAACAATATCAACCTCACATAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0122 -92 3.5 AAACACAACTTACCTCACATTT
Position: -266
Score: 5
Sequence: AATTGTGCTGTAGATCTCATAA
Position: -161
Score: 4.2
Sequence: AAACATGATCGTTATCATAAAA
Locus tag: YberA_01000164
YberA_01000164 -266 5 AATTGTGCTGTAGATCTCATAA
-161 4.2 AAACATGATCGTTATCATAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylF
Ortholog function: Xylose ABC transporter, periplasmic xylose-binding protein XylF
Escherichia coli str. K-12 substr. MG1655 b3566 -253 4.2 AAGTGTGCGCTCGCTCGCAAAA
-163 3.7 AAGTAAGATCTCGGTCATAAAT
Citrobacter koseri ATCC BAA-895 CKO_05022 -254 4.1 AAGTGTGCGCCGCCTCGCAAAA
-162 3.8 AAGTACGATCTCGGTCATAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03930 -234 3.8 AAATACGATCGCCGTCATAATT
Enterobacter sp. 638 Ent638_0155 -264 3.9 AAACGTGCGCTGGCTCCCAAAA
Yersinia pestis KIM y4056 -264 4.8 AATTGTGGTGTAGATCTCATAA
-160 4.2 AAACATGATCGTTATCATAAAA
Serratia proteamaculans 568 Spro_0099 -259 4.4 AAATGTGCGACAGATCTCATAA
-166 3.7 AAGCATGACCGCCATCATAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0098 -272 4.5 AAATATGACCCGCATCAAAAAA
Position: -239
Score: 4.1
Sequence: TTTTATGATAACGATCATGTTT
Position: -134
Score: 4.7
Sequence: TTATGAGATCTACAGCACAATT
Locus tag: YberA_01000165
YberA_01000165 -239 4.1 TTTTATGATAACGATCATGTTT
-134 4.7 TTATGAGATCTACAGCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylA
Ortholog function: Xylose isomerase (EC 5.3.1.5)
Escherichia coli str. K-12 substr. MG1655 b3565 -224 3.9 ATTTATGACCGAGATCTTACTT
-134 4.2 TTTTGCGAGCGAGCGCACACTT
Salmonella typhimurium LT2 STM3661 -260 3.9 TTATGCGAAATTCATCACAGCA
-133 4.4 TTTTGAGAGCCAGAGCACATTT
Citrobacter koseri ATCC BAA-895 CKO_05021 -214 4.1 AATTATGACCGAGATCGTACTT
-122 4.2 TTTTGCGAGGCGGCGCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03929 -234 4.1 TTTTGCGAGCTGGCGCACGTTT
Enterobacter sp. 638 Ent638_0156 -231 3.8 ATTTATGACCGTGATCTGATTT
-135 3.9 TTTTGGGAGCCAGCGCACGTTT
Yersinia pestis KIM y4057 -220 4.6 TTATGAGATCTACACCACAATT
Serratia proteamaculans 568 Spro_0098 -222 3.9 TTTTATGATGGCGGTCATGCTT
-129 4.6 TTATGAGATCTGTCGCACATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0097 -223 4.7 TTTTTTGATGCGGGTCATATTT
-135 4.4 TTTTGCGACACAGCGCACATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu2275 -251 4.6 ATTTATGAGATAAATCACACAA
Position: -278
Score: 4.9
Sequence: TAATGTGATCTCAATCAACAAA
Position: -234
Score: 5.6
Sequence: TAATGTGATTTACGTCACATAA
Locus tag: YberA_01000190
YberA_01000190 -278 4.9 TAATGTGATCTCAATCAACAAA
-234 5.6 TAATGTGATTTACGTCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtlA
Ortholog function: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655 b3599 -206 4.5 TTTTGTGATGAACGTCACGTCA
-162 5.4 TTATGTGATTGATATCACACAA
-113 3.3 TTCAGTGCCAGATTTCGCAGTA
Salmonella typhimurium LT2 STM3685 -207 4.8 CTTTGTGATCAATATCACATCA
-163 5.4 TTATGTGACGCAAATCACATAA
Citrobacter koseri ATCC BAA-895 CKO_05054 -203 5.2 TTTTGTGATCAATATCACATCA
-159 5 TCATGTGATCCAAATCACACAA
-110 3.4 TTCAGTGCCAGATTTCGCACTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03942 -208 4.9 TTTTGTGATCATCATCACTAAA
-164 5.2 TCATGTGATCCAAATCACATAA
-115 3.4 TTCAGTGCCAGATTTCGCACTA
Enterobacter sp. 638 Ent638_0136 -224 3.4 TATTTTTTTCATACTCTCATTT
-205 4.8 TTTTGTGATGGCGATCACCTCA
-161 5.1 TTGCGTGATGCAGATCACACAA
Erwinia amylovora ATCC 49946 EAM_3416 -229 3.3 CATTGCGAATATCTTTACACTT
-210 3.9 CTTCGTGACTCATGTCACTAAA
-166 4.8 TTAAGTGACCCGCATCACACTT
-95 3.2 CGTTTTGATCGTGATCCCTCAA
-34 3.5 ACATGAGATTTGCATCATTAAT
Yersinia pestis KIM y4087 -223 4.6 AGATGTGATCTTAATCAACAAA
-179 4.5 TTGTGTGACTTTCGTCACGAAA
Serratia proteamaculans 568 Spro_0072 -195 5.2 AAATGTGATGTATATCACTATA
-151 4.5 GTTGGTGATCTGCATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0087 -230 5.1 TTTTGTGAAGTAAATCACCTAT
-186 4.5 TTGTGTGATTTTTGTCACGTTG
Position: -173
Score: 4
Sequence: ATTCATGACCGCTATCACAATC
Locus tag: YberA_01000215
YberA_01000215 -173 4 ATTCATGACCGCTATCACAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadH
Ortholog function: 2,4-dienoyl-CoA reductase [NADPH] (2,4-dienoyl coenzyme A reductase)
Escherichia coli str. K-12 substr. MG1655 b3081 -112 3.9 CTTTTTGAATCCCATCACAAAC
Salmonella typhimurium LT2 STM3219 -113 4.3 TTTTTTGAATCCCATCACAATC
Citrobacter koseri ATCC BAA-895 CKO_04487 -113 4.3 TTTTTTGAATCCCATCACAATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03510 -111 3.9 TTCTTTGAATCCCATCACAATC
Enterobacter sp. 638 Ent638_3539 -111 3.9 ATCTTTGAATCCCATCACATTC
Erwinia amylovora ATCC 49946 EAM_0507 -169 3.8 AACCGTGACTGAGATCGCTAAA
Yersinia pestis KIM y3589 -131 4 ATTCATGACGGCTATCACAATC
Serratia proteamaculans 568 Spro_4309 -126 4.2 ATTCATGACATCTATCACATTC
Proteus mirabilis HI4320 PMI3702 -213 3.8 TATTATTATATGATTAAAAAAT
-103 3.8 TTCCATGATTAAGATCACAACT
Photorhabdus luminescens subsp. laumondii TTO1 plu3990 -161 4.3 TTTCATGACCTTCATCACATTC
Position: -142
Score: 4.4
Sequence: AGTTGTGATCGCAAGCGCAATA
Locus tag: YberA_01000345
YberA_01000345 -142 4.4 AGTTGTGATCGCAAGCGCAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ychH
Ortholog function: membrane protein
Escherichia coli str. K-12 substr. MG1655 b1205 -105 4.5 AATTGTGATCACGCCCGCACAT
Salmonella typhimurium LT2 STM1782 -105 4.4 ATTTGTGATCGCACCCGCACTT
Citrobacter koseri ATCC BAA-895 CKO_01260 -104 4.1 AATTGTGATCGCCCACGCACTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02241 -100 4.1 TAATGTGATCGTGGACGCACTC
Enterobacter sp. 638 Ent638_2343 -119 3.7 TGTTGTGACGAGAGTCATTAAT
-101 4 TAATGTGATCATTCACGCAACT
Erwinia amylovora ATCC 49946 EAM_1581 -97 3.9 AAATGTGATCGCTGACTCATCA
Yersinia pestis KIM y2296 -145 3.9 AGTTGTGATCGCTACCGCAACA
Serratia proteamaculans 568 Spro_1985 -117 4.2 ATTTGTGATCGCCTACGCAATC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2185 -275 3.6 TAGCGTGATTATGAGAACGCTA
-117 3.8 ATCTGTGATCCCTCCCGCAATC
Photorhabdus luminescens subsp. laumondii TTO1 plu2065 -189 4.1 AGTTGTGATCGTGTCCGCAATG
Position: -125
Score: 4.4
Sequence: ATTTGAGATACATCTCTCATTA
Position: -75
Score: 4.4
Sequence: TAACGGGATACACATCACACTA
Locus tag: YberA_01000422
YberA_01000422 -125 4.4 ATTTGAGATACATCTCTCATTA
-75 4.4 TAACGGGATACACATCACACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cdd
Ortholog function: cytidine deaminase
Escherichia coli str. K-12 substr. MG1655 b2143 -128 4.3 ATTTGCGATGCGTCGCGCATTT
-78 5.1 TAATGAGATTCAGATCACATAT
Salmonella typhimurium LT2 STM2183 -128 4.2 ATTTGCGATACGTCGCGCATTT
-78 4.8 CAATGAGATTTAGATCACATAT
Citrobacter koseri ATCC BAA-895 CKO_00646 -128 4.3 ATTTGCGATGCGTCGCGCATTT
-78 4.8 CAATGAGATTTGGATCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02584 -78 4.4 GAATGAGATATTCATCACATAT
Enterobacter sp. 638 Ent638_2746 -127 4.2 ATTTGCGATGCGTCGCGCAATT
-77 4.9 TAATGAGAACTGGATCACATAT
Erwinia amylovora ATCC 49946 EAM_2202 -124 3.9 ACTTGCGATAAGTCTCTCATTT
-104 4.1 TTTGGTGATGCATTTCATTTAT
-74 4.7 TAGAGCGATTTAGATCACATAT
Yersinia pestis KIM y2657 -75 5 TAATGAGATATAAATCACAATT
Serratia proteamaculans 568 Spro_1568 -127 4.1 ACTTGCGATACATCTCGCAATT
-77 4.5 TAAAGAGATTTACATCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2830 -130 4.6 AATTGAGATACATCTCGCATTT
-79 4.5 TAAAGAGATTCCGATCACAATT
Edwardsiella tarda EIB202 ETAE_1162 -76 4.9 AAAAGTGATTATTATCACAAAT
Proteus mirabilis HI4320 PMI0643 -132 4.4 ATTTGAGATGTATCTCCCAATT
-82 5.1 AAATATGATTTTAATCACATAT
Photorhabdus luminescens subsp. laumondii TTO1 plu1547 -75 4.7 CTATATGATATTTATCACATTA
Position: -71
Score: 4.7
Sequence: TAGTGTGATGGCTGGCACATAA
Locus tag: YberA_01000424
YberA_01000424 -71 4.7 TAGTGTGATGGCTGGCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yohJ
Ortholog function: LrgA family protein
Escherichia coli str. K-12 substr. MG1655 b2141 -68 4.9 TAATGTGATCGGTAGCACGTTT
Salmonella typhimurium LT2 STM2181 -68 4.6 TGATGTGATCGGTAGCACGTTT
Citrobacter koseri ATCC BAA-895 CKO_00648 -68 4.6 TGATGTGATCGGTAGCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02582 -68 5 TGATGTGATCGGTAGCACATTT
Enterobacter sp. 638 Ent638_2744 -68 4.7 TGATGTGATCCGTAGCACGTTT
Yersinia pestis KIM y2654 -32 4.7 TAGTGTGATGGGTAGCACAGAA
Serratia proteamaculans 568 Spro_1570 -62 4.3 ATTTGTGGCGGAGGTCACAGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2828 -69 4.5 ATTCGTGATCTGTGGCACGTAA
Edwardsiella tarda EIB202 ETAE_1164 -68 4.9 TGATGTGATCAGTAGCACATTT
Proteus mirabilis HI4320 PMI0645 -71 5.2 TATTGTGATCCATAGCACACTT
Position: -129
Score: 3.8
Sequence: AGTTGTGCTATCTATCGCACCA
Locus tag: YberA_01000442
YberA_01000442 -129 3.8 AGTTGTGCTATCTATCGCACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gnd
Ortholog function: hypothetical protein
Enterobacter sp. 638 Ent638_2642 -116 4 CAGTGTGACATAGATCAGCAAA
Yersinia pestis KIM y2629 -78 3.8 AGTTGTGCTATCTATCGCACCA
-76 3.6 TTGTGCTATCTATCGCACCAAT
Serratia proteamaculans 568 Spro_1608 -297 3.7 ATGCTTGAAGTGGCTCTCACTT
-72 4.2 ACATGTGTGCCACATCACAAAA
Proteus mirabilis HI4320 PMI0655 -71 4.7 CTATGTGATCAGGTTAACAAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu1560 -74 4.4 ACATGTGATCACATTAACAAAT
Position: -199
Score: 3.6
Sequence: AAAATCGATGTAGATATCATAA
Position: -120
Score: 4.3
Sequence: TTATGCAATAAAATTCACATAA
Locus tag: YberA_01000512
YberA_01000512 -199 3.6 AAAATCGATGTAGATATCATAA
-120 4.3 TTATGCAATAAAATTCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argG
Ortholog function: Argininosuccinate synthase (EC 6.3.4.5)
Escherichia coli str. K-12 substr. MG1655 b3172 -253 4.6 TATAGTGATCCACGCCACATTT
Erwinia amylovora ATCC 49946 EAM_0139 -121 3.5 AATAGTGAATAAAAATACAATA
Serratia proteamaculans 568 Spro_4779 -167 4 TATTGTGAATAAAAATACAATA
Edwardsiella tarda EIB202 ETAE_3480 -160 3.4 AATTATGAATAAAAATACAATA
Proteus mirabilis HI4320 PMI3239 -57 3.6 TTTTTTGAATAAAAATACATTA
Photorhabdus luminescens subsp. laumondii TTO1 plu4742 -59 3.6 TTTTTTGAATAAAAATACATTA
Position: -56
Score: 3.6
Sequence: TTGTGTAATACTTGTAACGCTA
Locus tag: YberA_01000555
YberA_01000555 -56 3.6 TTGTGTAATACTTGTAACGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lpp
Ortholog function: major outer membrane lipoprotein
Escherichia coli str. K-12 substr. MG1655 b1677 -56 3.6 TTGTGTAATACTTGTAACGCTA
Salmonella typhimurium LT2 STM1377 -56 3.6 TTGTGTAATACTTGTAACGCTA
Citrobacter koseri ATCC BAA-895 CKO_01710 -56 3.6 TTGTGTAATACTTGTAACGCTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02134 -56 3.6 TTGTGTAATACTTGTAACGCTA
Enterobacter sp. 638 Ent638_1767 -56 3.6 TTGTGTAATACTTGTAACGCTA
Erwinia amylovora ATCC 49946 EAM_1656 -56 3.6 TTGTGTAATACTTGTAACGCTA
Serratia proteamaculans 568 Spro_2186 -55 3.6 TTGTGTAATACTTGTAACGCTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1866 -56 3.6 TTGTGTAATACTTGTAACGCTA
Edwardsiella tarda EIB202 ETAE_1852 -55 3.6 TTGTGTAATACTTGTAACGCTA
Proteus mirabilis HI4320 PMI1409 -200 4.4 TTTTGTGAAATAACACGCATTT
Position: -64
Score: 4.3
Sequence: TATTGTGATCGCCATCACTTCC
Locus tag: YberA_01000569
YberA_01000569 -64 4.3 TATTGTGATCGCCATCACTTCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroH
Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase
Escherichia coli str. K-12 substr. MG1655 b1704 -106 4.3 AGGTGTGACACACCTCGCACTT
-64 4 TATCGTGATGCGCATCACTTCC
Salmonella typhimurium LT2 STM1347 -106 4.3 AGGTGTGACACGCCTCGCACTT
-64 4 TATCGTGATGCCCATCACTTCC
Citrobacter koseri ATCC BAA-895 CKO_01728 -115 4.3 AGGTGTGAAACGCCTCGCATTT
-64 4.3 TATTGTGATGCCCATCACTTCC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02162 -63 4 TATCGTGATGCGCATCACTTCC
Enterobacter sp. 638 Ent638_1743 -126 3.6 AGTTATGATCGCTTTCACTCTC
-62 3.6 TAAGGTGATGCCCATCACTTCC
Yersinia pestis KIM y1928 -64 4.3 TATTGTGATCGCCATCACTTCC
Serratia proteamaculans 568 Spro_2172 -135 3.9 TTTTGTGCTTTTTTTAGCGATT
-64 4.3 TATTGTGATCGCCATCACTTCC
Edwardsiella tarda EIB202 ETAE_1792 -63 4 TATCGTGATCCCCATCACTTCC
Proteus mirabilis HI4320 PMI1423 -55 3.9 TATTGTGATCTTAATCACTGGG
Photorhabdus luminescens subsp. laumondii TTO1 plu2630 -62 3.8 TATTGTAATTTCCATTATCTAT
Position: -123
Score: 3.9
Sequence: TTATGGGATCTCGATATCAGAA
Position: -101
Score: 3.8
Sequence: AATAGTGATGTATCTCCCAACC
Locus tag: YberA_01000598
YberA_01000598 -123 3.9 TTATGGGATCTCGATATCAGAA
-101 3.8 AATAGTGATGTATCTCCCAACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadD
Ortholog function: long-chain-fatty-acid--CoA ligase
Escherichia coli str. K-12 substr. MG1655 b1805 -131 3.7 AATAGTGACGCGCTTCGCAACC
Salmonella typhimurium LT2 STM1818 -131 3.7 AATAGTGACGCGCTTCGCAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02322 -97 3.7 AATAGTGACGCGCTTCGCAACC
Erwinia amylovora ATCC 49946 EAM_1956 -130 3.9 TTTAGTGATGCGCTTCGCAACC
Yersinia pestis KIM y2236 -80 4.1 AATAGTGATGTATATCTCAACC
Serratia proteamaculans 568 Spro_2760 -99 3.9 ATTAGTGACGTACATCGCAACC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2372 -132 3.8 ATTAGTGATCGTTCTCGCAACC
-75 3.7 TAAAATAATGTTAATAACAATA
Proteus mirabilis HI4320 PMI1166 -121 4.4 TTTAGTGATACACTTCGCATCT
Photorhabdus luminescens subsp. laumondii TTO1 plu2134 -288 3.8 AAATGCTATCTTAAGCAAAAAA
-137 4 ATTAGTGATGTGTATCTCAACC
Position: -109
Score: 4
Sequence: TATTGTGACTATCATAATAGAT
Locus tag: YberA_01000622
YberA_01000622 -109 4 TATTGTGACTATCATAATAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: manX
Ortholog function: PTS enzyme IIAB, mannose-specific
Yersinia pestis KIM y2551 -231 3.9 ATAGATGAGCAATGTCACATAA
Position: -216
Score: 3.7
Sequence: TAATGTGCGAATAATCATCAAT
Locus tag: YberA_01000675
YberA_01000675 -216 3.7 TAATGTGCGAATAATCATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tcyP
Ortholog function: L-cystine uptake protein TcyP
Escherichia coli str. K-12 substr. MG1655 b1729 -90 3.9 ATATAAGAGCCAGCTCACAGTT
Salmonella typhimurium LT2 STM1320 -91 3.9 ATATAAGAGCCAGCTCACAGTT
Citrobacter koseri ATCC BAA-895 CKO_01755 -90 3.7 ATATAAGAGGTCGGTCACAGTT
Yersinia pestis KIM y1878 -166 3.6 TGATTTGATTTAATACAAATCA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2410 -176 3.7 TGACGTTATCTGCTGCACCCAT
Position: -277
Score: 5.2
Sequence: TAATGTGACTTTGTTCACACTA
Position: -21
Score: 4.8
Sequence: TAATTTGAGAGAGATCACAAAA
Locus tag: YberA_01000868
YberA_01000868 -277 5.2 TAATGTGACTTTGTTCACACTA
-21 4.8 TAATTTGAGAGAGATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: CKO_02295
Ortholog function: hypothetical protein
Citrobacter koseri ATCC BAA-895 CKO_02295 -218 3.9 TTTTGTTATCTCATTGAAAATT
-104 4.1 TTTTGTGCAAGTTTTCTCATTA
Citrobacter koseri ATCC BAA-895 CKO_02295 -218 3.9 TTTTGTTATCTCATTGAAAATT
-104 4.1 TTTTGTGCAAGTTTTCTCATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00854 -103 3.9 TGAAATGAGCGAGATCGCATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00854 -103 3.9 TGAAATGAGCGAGATCGCATAT
Enterobacter sp. 638 Ent638_1314 -122 4.1 TTTTGTGCAAGCTTTCTCATAA
Enterobacter sp. 638 Ent638_1314 -122 4.1 TTTTGTGCAAGCTTTCTCATAA
Yersinia pestis KIM y3231 -299 5.4 TAATGTGACTTTGTTCACATTA
-122 3.8 TTCTTTGAAAGAATTCTCATAA
-21 4.9 TAATTTGAGGGAGATCACAAAA
Yersinia pestis KIM y3231 -299 5.4 TAATGTGACTTTGTTCACATTA
-122 3.8 TTCTTTGAAAGAATTCTCATAA
-21 4.9 TAATTTGAGGGAGATCACAAAA
Serratia proteamaculans 568 Spro_3600 -130 3.7 AAACGTGGTTTTTTGCAAAAAT
-21 4.6 AAATTTGAAGGAGATCACAGAA
Serratia proteamaculans 568 Spro_3600 -130 3.7 AAACGTGGTTTTTTGCAAAAAT
-21 4.6 AAATTTGAAGGAGATCACAGAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1966 -21 4.8 AAAAGTGAACGGGATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1966 -21 4.8 AAAAGTGAACGGGATCACAAAA
Position: -223
Score: 3.7
Sequence: AACTGTGATCTTCAACGCAAGT
Locus tag: YberA_01000888
YberA_01000888 -223 3.7 AACTGTGATCTTCAACGCAAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: treB
Ortholog function: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655 b4240 -101 3.8 AATTGTGATCTTCGCTGCGTTT
Citrobacter koseri ATCC BAA-895 CKO_03571 -156 3.8 ATTTGTGATCTTCGCTGCGTTT
Enterobacter sp. 638 Ent638_0439 -106 4 TATTGTGATCTTCACCCGATTT
Serratia proteamaculans 568 Spro_0529 -124 3.8 TTTTGTGATCCTCGCCCCAAAC
Photorhabdus luminescens subsp. laumondii TTO1 plu3288 -127 4.3 CAATGTGATCTTCAACCCATTT
Position: -109
Score: 5.1
Sequence: ATGTGTGATCTAAATCACTTTT
Locus tag: YberA_01000909
YberA_01000909 -109 5.1 ATGTGTGATCTAAATCACTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aaeR
Ortholog function: LysR-family transcriptional regulator
Escherichia coli str. K-12 substr. MG1655 b3243 -37 5.3 TTATGTGATCTAAATCACTTTT
Salmonella typhimurium LT2 STM3367 -37 5.3 TTATGTGATCTAAATCACTTTT
Citrobacter koseri ATCC BAA-895 CKO_04651 -37 5.3 ATATGTGATCTAAATCACTTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03652 -55 5.1 ATGTGTGATCTAAATCACTTTT
Enterobacter sp. 638 Ent638_3680 -37 5.3 ATATGTGATCTAAATCACTTTT
Erwinia amylovora ATCC 49946 EAM_3128 -37 5.3 AAATGTGATCTAAATCACTTTT
Yersinia pestis KIM y0180 -55 5.1 ATGTGTGATCTAAATCACTTTT
Serratia proteamaculans 568 Spro_4393 -37 4.9 ATCTGTGATCTAAATCACTTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0276 -37 5.1 TAGTGTGATCTAAATCACTTTT
Edwardsiella tarda EIB202 ETAE_3129 -131 4.5 ATCTGTGACGCAAATCACTTTT
Position: -28
Score: 3.8
Sequence: TTTTGCGATACACGTCTAATAG
Locus tag: YberA_01000968
YberA_01000968 -28 3.8 TTTTGCGATACACGTCTAATAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: cpdB
Ortholog function: 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor
Escherichia coli str. K-12 substr. MG1655 b4213 -118 3.8 AACTGTGATAGTGTCATCATTT
-85 3.8 AATTGTGGCATTCTTCACTGTT
Salmonella typhimurium LT2 STM4403 -145 3.7 TTCTGTGAACACTCGCAAAAAA
Citrobacter koseri ATCC BAA-895 CKO_03616 -25 4.2 TTTTGTGTTTCAGATCTAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04607 -156 3.8 TTGTTTTATTTATATCGCATCA
-87 3.7 TTTTCTGGCAAGATTCACATTT
-35 4.2 TTCTGTGCTATCGCTCATAAAA
Enterobacter sp. 638 Ent638_0392 -34 4 TTTTGTGGCTTGGATCGAAAAA
Yersinia pestis KIM y0653 -148 3.6 AACTGTGAGCGTCTACGCGTTA
-116 3.8 TTTTCTGCCAAACTTCACACTT
-63 4.4 TTTTGCGATACATATCGAATAT
Serratia proteamaculans 568 Spro_0453 -95 3.8 TTTTCTGCCACACTTCACAGTT
Position: -314
Score: 3.6
Sequence: CTATTAGACGTGTATCGCAAAA
Locus tag: YberA_01000969
YberA_01000969 -314 3.6 CTATTAGACGTGTATCGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysQ
Ortholog function: PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase
Escherichia coli str. K-12 substr. MG1655 b4214 -126 3.6 AACAGTGAAGAATGCCACAATT
Salmonella typhimurium LT2 STM4404 -144 3.9 TTTTTTGCGAGTGTTCACAGAA
Citrobacter koseri ATCC BAA-895 CKO_03615 -178 4.1 TTTTTAGATCTGAAACACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04608 -178 4.1 TTTTATGAGCGATAGCACAGAA
-126 3.7 AAATGTGAATCTTGCCAGAAAA
-57 3.9 TGATGCGATATAAATAAAACAA
Enterobacter sp. 638 Ent638_0393 -167 3.9 TTTTTCGATCCAAGCCACAAAA
Erwinia amylovora ATCC 49946 EAM_0455 -158 4.2 AAATGTGACACAGCACGAATAA
Serratia proteamaculans 568 Spro_0454 -180 3.7 AACTGTGAAGTGTGGCAGAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3601 -258 3.7 TAAAGTGATTATCGTCTCTAAA
Position: -96
Score: 4.8
Sequence: TAATTTGAGCCGGTTCACACTT
Locus tag: YberA_01001008
YberA_01001008 -96 4.8 TAATTTGAGCCGGTTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deaD
Ortholog function: ATP-independent RNA helicase
Salmonella typhimurium LT2 STM3280.S -154 3.9 CTTTTTGATTGCCATCACCTTC
-99 4.4 TACTTTGAGCCGGTTCACACTT
Citrobacter koseri ATCC BAA-895 CKO_04559 -103 3.9 CTTTTTGATTGCCATCACCTTC
-48 4.4 TACTTTGAGCCGGTTCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03570 -154 3.8 TTTTTTGCTTGCCATCACCTTC
-99 4.4 TACTTTGAGCCGGTTCACACAT
Enterobacter sp. 638 Ent638_3599 -154 4.1 TCTTATGATTGCCATCACCTTA
-99 4.4 TACTTTGAGCCGGTTCACACTT
Erwinia amylovora ATCC 49946 EAM_3065 -99 4.8 TAATTTGAGCCGGTTCACACTT
Yersinia pestis KIM y0696 -96 4.8 TAATTTGAGCCGGTTCACACTT
Serratia proteamaculans 568 Spro_0495 -96 4.8 TAATTTGAGCCGGTTCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0718 -96 4.4 CAATTTGAGCCGGTTCACACTT
Edwardsiella tarda EIB202 ETAE_0411 -96 4.8 TAATTTGAGCCGGTTCACACTT
Proteus mirabilis HI4320 PMI3424 -80 5 TAATTTGAGCCAGTTCACATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu4523 -95 5 TAATTTGAGCCAGTTCACATTT
Position: -97
Score: 4.3
Sequence: TAATGCGCGCCGAATCACATTT
Locus tag: YberA_01001125
YberA_01001125 -97 4.3 TAATGCGCGCCGAATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybiT
Ortholog function: ABC transporter ATP-binding protein
Escherichia coli str. K-12 substr. MG1655 b0820 -124 4.4 AGATGTGTACGAAATCACATTT
Salmonella typhimurium LT2 STM0838 -124 4 AGATGTGTACGAAATCACGTTT
Citrobacter koseri ATCC BAA-895 CKO_02298 -148 4.4 AGATGTGTACGAAATCACATTT
Enterobacter sp. 638 Ent638_1311 -125 4.4 AGATGTGTACGAAATCACATTT
Yersinia pestis KIM y2677 -295 3.9 TATCGTTATACCCGTCATACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3010 -41 4 TAATGCGCGCCAAATCACATTC
Edwardsiella tarda EIB202 ETAE_2518 -40 4.8 TAATGTGAACAAAATCACGTTA
Position: -57
Score: 4
Sequence: GGGTGTGATCTGCATCATGTTT
Locus tag: YberA_01001133
YberA_01001133 -57 4 GGGTGTGATCTGCATCATGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: folE
Ortholog function: GTP cyclohydrolase I
Escherichia coli str. K-12 substr. MG1655 b2153 -101 3.8 TTATGTGCGCCGCCTCACGCAC
Salmonella typhimurium LT2 STM2193 -101 4 TTATGTGCGCTACCTCACGCAC
Citrobacter koseri ATCC BAA-895 CKO_00638 -98 3.8 TTATGTGCGCCGCCTCACGCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02591 -84 3.5 TTCTGTGCGCCACCTCACGCAC
Enterobacter sp. 638 Ent638_2753 -84 3.9 TTATGTGCGCCACCTCACGCAC
Serratia proteamaculans 568 Spro_1560 -121 4.3 AATCTTGACCGGGTTCACGTTA
Proteus mirabilis HI4320 PMI0639 -86 4.9 TAATGTGATTCAGCTCATCTAA
Position: -108
Score: 3.6
Sequence: TCTTGTGACGTATTTCACGTGG
Locus tag: YberA_01001136
YberA_01001136 -108 3.6 TCTTGTGACGTATTTCACGTGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: galS
Ortholog function: Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator
Escherichia coli str. K-12 substr. MG1655 b2151 -146 3.5 GATAACGATCTGGATCACATTC
-95 3.9 TGCTGTGACTCGATTCACGAAG
Salmonella typhimurium LT2 STM2191 -154 3.5 GATAACGATCTGGATCACATTC
-103 3.5 CCCTGTGATGTTTCTCACGCAG
-38 3.3 ATTTGTGAGCATTTTTGAACTC
Citrobacter koseri ATCC BAA-895 CKO_00640 -157 3.5 GATAACGATCTGGATCACATTC
-106 3.4 CCCTGTGACCTTACTCACGTAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02589 -160 3.3 GATAACGATCTCGATCACAATC
-109 3.4 CCGTGTGACCTCACTCACGCAG
-33 3.6 TGACGTGCTGTAATTCTCTTAA
Enterobacter sp. 638 Ent638_2751 -160 3.4 GATAACGATCTGGATCACAATC
-109 4.1 CTGTGTGAGCTTCTTCACGTAG
Erwinia amylovora ATCC 49946 EAM_2208 -110 3.4 GGCTGTGAGGTTTCTCACGTAG
Serratia proteamaculans 568 Spro_1562 -135 3.4 AATTGAGATCTGGCGCAGGTAG
-84 3.5 TCCTGTGACGGGATTCACGCAG
Position: -319
Score: 4.4
Sequence: ATCTGTGAGAAAATTCACAGAT
Locus tag: YberA_01001137
YberA_01001137 -319 4.4 ATCTGTGAGAAAATTCACAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mglB
Ortholog function: Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3)
Escherichia coli str. K-12 substr. MG1655 b2150 -270 4.5 ATCTGTGAGTGATTTCACAGTA
Citrobacter koseri ATCC BAA-895 CKO_00641 -270 4.7 ATATGTGAGTAAATTCACAGTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02588 -239 4.8 ATTTGTGAGTAAATTCACAGTA
Enterobacter sp. 638 Ent638_2750 -271 4.4 ATCTGTGAGTAAATTCACAGTA
Yersinia pestis KIM y2662 -212 4.4 ATCTGTGAGAAAATTCACAGTT
Serratia proteamaculans 568 Spro_1563 -229 4.4 ATCTGTGAGAAAATTCACAGAT
Position: -185
Score: 3.8
Sequence: AAAATTGATATAAAACATAAAT
Locus tag: YberA_01001208
YberA_01001208 -185 3.8 AAAATTGATATAAAACATAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: grcA
Ortholog function: Autonomous glycyl radical cofactor
Serratia proteamaculans 568 Spro_3682 -140 3.8 AAAATTGACTTTAATCAAAGAA
Position: -178
Score: 4.2
Sequence: AAATGTGCGGGATGTCAAAAAT
Locus tag: YberA_01001237
YberA_01001237 -178 4.2 AAATGTGCGGGATGTCAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fruB
Ortholog function: PTS system, fructose-specific IIA/FPr component
Escherichia coli str. K-12 substr. MG1655 b2169 -178 4.3 AATTGTGCAGCACATCAAACTT
Salmonella typhimurium LT2 STM2206 -177 4.6 AAATGTGCTTCACCTCAAAAAA
Citrobacter koseri ATCC BAA-895 CKO_00613 -50 4.1 AAGTGTGCTTTATCTCTAAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02600 -177 3.5 AAGTGTGCAGTACCTCTAAGTT
Enterobacter sp. 638 Ent638_2763 -178 4.3 AAATGTGCTGCACTTCTAAATT
Erwinia amylovora ATCC 49946 EAM_2223 -179 4.4 AAATGTGCTGGCTGTCAAAAAT
Yersinia pestis KIM y2887 -178 4.1 AAATGTGCGGAATGTCAAAAAT
Serratia proteamaculans 568 Spro_3230 -177 4 AAGTGTGCGTGAGGTCAAAAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2729 -180 4.1 AAATGTGCGTGATGTCAAAATT
Edwardsiella tarda EIB202 ETAE_2303 -199 4.1 AAATGTGCTGAAGGTCTAAAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu1992 -180 4.7 AAATGTGAGTAATCTCAAAAAA
Position: -151
Score: 4.2
Sequence: ATTCGTGAGTTGGATCAACCAA
Locus tag: YberA_01001244
YberA_01001244 -151 4.2 ATTCGTGAGTTGGATCAACCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxuA
Ortholog function: Mannonate dehydratase (EC 4.2.1.8)
Escherichia coli str. K-12 substr. MG1655 b4322 -271 3.8 TGTTGCGATGAATGTCACATCC
-186 4.5 TCTTGTGATGTGGTTAACCAAT
Salmonella typhimurium LT2 STM3135 -205 4.3 AAAATTGACACAGATCAAATAA
-155 4.6 ATTTGTGATTTGGTTAGCCAAT
Citrobacter koseri ATCC BAA-895 CKO_00609 -115 3.9 GATTGTGAGCTGGATCAATCAA
Enterobacter sp. 638 Ent638_2767 -116 3.9 TTCTGTGAGTTGGATCAATCAA
Serratia proteamaculans 568 Spro_3238 -167 3.9 AACCGTGAAGTGGATCAACCAA
-48 4.1 AATCTTGATCACCACCACAATA
Edwardsiella tarda EIB202 ETAE_2289 -188 4.2 AATCGTGAGGCGGATCAACCAA
Position: -251
Score: 4.3
Sequence: TATTGTGCGTTCCTGCACATTT
Locus tag: YberA_01001249
YberA_01001249 -251 4.3 TATTGTGCGTTCCTGCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: spr
Ortholog function: predicted peptidase, outer membrane lipoprotein
Escherichia coli str. K-12 substr. MG1655 b2175 -130 4.1 TTTTGTGCGTTAGTCCACAGAT
Salmonella typhimurium LT2 STM2214 -128 3.7 ATTTGTGCGTTCCGCCACAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02608 -292 3.6 TAGGGTAATCTCGTTCTCGTTT
-234 4.2 AATTGTGCGTGACTGCACAAAT
Enterobacter sp. 638 Ent638_2771 -250 3.6 AATCGCTTTGTCTATCACAATT
Yersinia pestis KIM y2908 -128 3.7 GAATGTGCGTTCATGCACATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2735 -159 3.9 TAATGTGCATTCTGGCACACTT
Edwardsiella tarda EIB202 ETAE_2298 -131 4.4 AAGTGTGTTCTGCTGCACAATT
Proteus mirabilis HI4320 PMI0831 -129 4.2 TTACGTGCTTTAGAGCACGTTT
Position: -238
Score: 4
Sequence: AAATGGGATCTAAATCCCAAAC
Locus tag: YberA_01001255
YberA_01001255 -238 4 AAATGGGATCTAAATCCCAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yejG
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b2181 -158 3.7 AAACGTGACCACGCCCGCAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02614 -204 3.8 AAAGTTGTTTTGGATCACAGAA
Erwinia amylovora ATCC 49946 EAM_2233 -177 3.6 AAATGAGCATTACTTCTCAAAA
Yersinia pestis KIM y2914 -238 4.4 AAATGGGATCTGAATCCCAAAT
Serratia proteamaculans 568 Spro_3250 -214 4.2 AAATGCGAGCTGAGTCGCAAAA
-121 4.1 GCTTGTGATGTTTTTTACATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2740 -178 4 ATTCGTGATCAGTTTGGCATTA
-101 3.8 TGTTGTTTTTTTGTTCACGAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2865 -185 4.1 AAATGAGAGATTGATCTCACTT
-183 3.6 ATGAGAGATTGATCTCACTTTT
-141 3.8 TAATGTAATACTATAAACACAA
Position: -205
Score: 3.9
Sequence: TAATGCGACATACATCCAAAAA
Locus tag: YberA_01001282
YberA_01001282 -205 3.9 TAATGCGACATACATCCAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybiH
Ortholog function: putative transcriptional regulator
Escherichia coli str. K-12 substr. MG1655 b0796 -123 4.5 TTTTGTGACGCAGCGCATAAAT
Salmonella typhimurium LT2 STM0819 -124 4.7 TTTTGTGATGCGGCGCATAAAT
Citrobacter koseri ATCC BAA-895 CKO_02331 -124 4.5 TTTTGTGACATACCGCATAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00824 -224 3.6 AAATGAAACGGTATTCAAAAAA
-118 4.7 AATTGTTAAGCCCATCACAAAT
Enterobacter sp. 638 Ent638_1287 -126 4.4 TTTTGTGACACGGCGCATAAAA
Serratia proteamaculans 568 Spro_1330 -146 4.6 TTAAGTGACGCAGAGCACAATA
Proteus mirabilis HI4320 PMI0619 -160 3.6 AATTTTTAAATAAATCATGTTT
Position: -259
Score: 4.4
Sequence: ATATGTGACTCCGTGCGCAAAA
Position: -167
Score: 3.7
Sequence: AATTGAGATGGCTGTAACTAAT
Locus tag: YberA_01001298
YberA_01001298 -259 4.4 ATATGTGACTCCGTGCGCAAAA
-167 3.7 AATTGAGATGGCTGTAACTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hutU
Ortholog function: urocanate hydratase
Citrobacter koseri ATCC BAA-895 CKO_02357 -123 3.8 AAGCGTGATTGCTGACGCAATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00795 -124 4 AAACGTGATTGCTGACGCAATA
Enterobacter sp. 638 Ent638_1263 -120 4 AAGCGTGATAGCTAACGCAATA
Erwinia amylovora ATCC 49946 EAM_1253 -121 3.8 TTTTGTGACAAAGCTGGCACAA
Yersinia pestis KIM y4038 -261 4.9 ATATGTGATTTGGTGCGCAAAT
Serratia proteamaculans 568 Spro_0805 -196 4.8 TATTGTGATTTGACGCGCAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3193 -203 4.7 ATTTGTGATTATAAACACAAAA
Position: -210
Score: 4
Sequence: AGATGTGAGCCATATAACCTTC
Locus tag: YberA_01001309
YberA_01001309 -210 4 AGATGTGAGCCATATAACCTTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: dppB
Ortholog function: dipeptide ABC transporter, permease protein
Citrobacter koseri ATCC BAA-895 CKO_04993 -121 3.8 TTATGTGAACGGAATCCCCATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03898 -62 4 ATATGCAAACAACATCACAATT
Yersinia pestis KIM y3826 -211 3.9 AGATGTGAGCCATATAACCTCT
Serratia proteamaculans 568 Spro_0139 -271 3.8 TTGTTTGCTGTTTCTCACAGTC
Photorhabdus luminescens subsp. laumondii TTO1 plu0301 -223 3.7 AAATGTGCGCATTGTCATGTTT
Position: -166
Score: 4.1
Sequence: TACTGTGATACGCCTCGTATTG
Locus tag: YberA_01001349
YberA_01001349 -166 4.1 TACTGTGATACGCCTCGTATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: fsr
Ortholog function: fosmidomycin resistance protein
Escherichia coli str. K-12 substr. MG1655 b0479 -65 3.7 TAGTCTGGTAATAATCACAAAT
Salmonella typhimurium LT2 STM0493 -100 3.8 AATTGAGACTTCCTTCAAACAC
Citrobacter koseri ATCC BAA-895 CKO_02670 -102 3.8 AATTGAGACTTCCTTCAAACAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00460 -197 3.8 AATTGCGACTTCCTTCAAACCT
Enterobacter sp. 638 Ent638_0958 -92 4 AATTGCGACTTTCCTCAAATCT
Serratia proteamaculans 568 Spro_1146 -100 4.7 TTTTGCGATGTGCGTCAAATTA
Position: -80
Score: 3.7
Sequence: TATTGCTATGCATTACACCATT
Locus tag: YberA_01001350
YberA_01001350 -80 3.7 TATTGCTATGCATTACACCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ushA
Ortholog function: UDP-sugar hydrolase (EC 3.6.1.45); 5'-nucleotidase (EC 3.1.3.5)
Escherichia coli str. K-12 substr. MG1655 b0480 -174 4 ATTTGTGATTATTACCAGACTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00461 -125 3.9 AATTATTATCCAACTAACATAC
-94 3.7 AGGTTTGAAGGAAGTCGCAATT
Enterobacter sp. 638 Ent638_0959 -95 3.9 AGATTTGAGGAAAGTCGCAATT
Serratia proteamaculans 568 Spro_1147 -103 4.6 TAATTTGACGCACATCGCAAAA
Edwardsiella tarda EIB202 ETAE_1034 -139 4.4 TTAGGTGAGTCACGTCACAATA
Proteus mirabilis HI4320 PMI2177 -111 3.7 ATATATAACCTACGTCATAAAA
Position: -83
Score: 4
Sequence: CAATATGATCCATATCAATTTT
Locus tag: YberA_01001426
YberA_01001426 -83 4 CAATATGATCCATATCAATTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: focA
Ortholog function: formate transporter
Escherichia coli str. K-12 substr. MG1655 b0904 -156 3.6 TATTTTTATTTGGATAATCAAA
-78 3.8 AGATATGATCTATATCAATTTC
Salmonella typhimurium LT2 STM0974 -78 4.4 AGATATGATCTATATCAAATTC
Citrobacter koseri ATCC BAA-895 CKO_02167 -198 3.6 TATTTTTATTTGGATAATCAAA
-120 4.4 AGATATGATCTATATCAAATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00932 -121 3.8 AGATATGATCTATATCAATTTC
Enterobacter sp. 638 Ent638_1424 -78 3.8 AGATATGATCTATATCAATTTC
Yersinia pestis KIM y2789 -84 4 CAATATGATCCATATCAATTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2596 -79 4.5 CAATATGATCCACATCAAATTT
Proteus mirabilis HI4320 PMI0706 -188 4 TTTTTTGATAAAATTTAAAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1614 -88 4.7 AATTATGATCTATATCAAATTC
Position: -196
Score: 4.1
Sequence: AAGTTTGATGCAGCTAACGCTA
Locus tag: YberA_01001441
YberA_01001441 -196 4.1 AAGTTTGATGCAGCTAACGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: clpS
Ortholog function: ATP-dependent Clp protease adaptor protein
Escherichia coli str. K-12 substr. MG1655 b0881 -164 4 AAATTTGAAGCAGTTAACGCTA
Salmonella typhimurium LT2 STM0944 -164 4 AAATTTGAAGCAGTTAACGCTA
-104 3.6 AGATGTTAGTTATCTATCAATT
Citrobacter koseri ATCC BAA-895 CKO_02199 -164 4 AAATTTGAAGCAGTTAACGCTA
-135 4.2 TAATGTGACAGATGTCGCGGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00914 -167 4 AAATTTGAAGCAGTTAACGCTA
-77 4.3 ATTTGTGATGAGCATAACCTCT
Enterobacter sp. 638 Ent638_1398 -161 3.9 ATTTTTGAAGCAGTTAACGCTA
-132 3.8 GAATGTGACAGATATCGCGGAT
Erwinia amylovora ATCC 49946 EAM_1320 -161 4 AAATTTGAAGCAGTTAACGCTA
-132 4.5 TTTTGTGATAGAGGTCGCTATT
Serratia proteamaculans 568 Spro_1673 -176 3.6 AAGTTTGAAGCAGGTAACGCTA
Edwardsiella tarda EIB202 ETAE_2208 -164 3.8 AAGTTTGAGGCAGTTAACGCAA
-144 3.6 AATTGTGCGGCAGTGCGCTTTT
Proteus mirabilis HI4320 PMI0689 -268 3.7 TGTCTTTATTTACTTAACATTA
-148 4.1 AACTTTGATGTAGCTAACGCTT
Photorhabdus luminescens subsp. laumondii TTO1 plu1593 -170 4.3 AAGTTTGATATAGATAACGATA
Position: -237
Score: 3.9
Sequence: TAGCGTTAGCTGCATCAAACTT
Locus tag: YberA_01001442
YberA_01001442 -237 3.9 TAGCGTTAGCTGCATCAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cspD
Ortholog function: cold shock-like protein
Escherichia coli str. K-12 substr. MG1655 b0880 -180 4 TAGCGTTAACTGCTTCAAATTT
Salmonella typhimurium LT2 STM0943 -181 4 TAGCGTTAACTGCTTCAAATTT
Citrobacter koseri ATCC BAA-895 CKO_02200 -210 3.9 ATCCGCGACATCTGTCACATTA
-181 4 TAGCGTTAACTGCTTCAAATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00913 -270 4.2 AGAGGTTATGCTCATCACAAAT
-180 4 TAGCGTTAACTGCTTCAAATTT
Enterobacter sp. 638 Ent638_1397 -209 3.8 ATCCGCGATATCTGTCACATTC
-180 3.9 TAGCGTTAACTGCTTCAAAAAT
Serratia proteamaculans 568 Spro_1672 -205 4 TAGCGTTACCTGCTTCAAACTT
-49 3.9 TTCAGTTATTCATCTCACCTAA
Proteus mirabilis HI4320 PMI0688 -163 3.8 AAGCGTTAGCTACATCAAAGTT
Photorhabdus luminescens subsp. laumondii TTO1 plu1592 -194 4.6 TATCGTTATCTATATCAAACTT
Position: -313
Score: 3.5
Sequence: TTTTCTGATCCAGACTACCCTT
Locus tag: YberA_01001475
YberA_01001475 -313 3.5 TTTTCTGATCCAGACTACCCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: crp
Ortholog function: cyclic AMP receptor protein
Escherichia coli str. K-12 substr. MG1655 b3357 -154 3.3 TACATTGATGTACTGCATGTAT
-136 3.3 GTATGCAAAGGACGTCACATTA
Salmonella typhimurium LT2 STM3466 -159 3.1 TACATTGACGTACTGCATGTAT
Citrobacter koseri ATCC BAA-895 CKO_04777 -160 3.1 TACATTGACGTACTGCATGTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03743 -158 3.3 TACATTGATGTACTGCATGTAT
Enterobacter sp. 638 Ent638_3784 -128 2.9 AAACATTACAGGCTGCAAACAT
Yersinia pestis KIM y3956 -309 3 AATTTAGACTACCCTTTCATTT
Serratia proteamaculans 568 Spro_4580 -121 3.5 ATTTATGACACGCCTCAAAACC
Proteus mirabilis HI4320 PMI2820 -135 3.3 TATTATAATCTATTCCTTATTA
Position: -277
Score: 4.4
Sequence: AAATGGGATATTTCTCGCAAAA
Position: -226
Score: 3.9
Sequence: ATACGTGATCTCAGTTGCAGAA
Position: 14
Score: 4.5
Sequence: TTTAGTGACCTTCATCGCACTT
Locus tag: YberA_01001480
YberA_01001480 -277 4.4 AAATGGGATATTTCTCGCAAAA
-226 3.9 ATACGTGATCTCAGTTGCAGAA
14 4.5 TTTAGTGACCTTCATCGCACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppiA
Ortholog function: Peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8)
Yersinia pestis KIM y3951 -247 4.5 AAATGAGATATTTCTCGCAAAA
-81 3.6 AAATGTGCATTCTGTTACGTAA
Serratia proteamaculans 568 Spro_4589 -181 3.9 ATGCGTGATGCAGTTGGCAAAA
Position: -75
Score: 3.4
Sequence: CTAATTGATTTACATCAAGAAG
Position: -4
Score: 3.5
Sequence: AAAAATGAGCAAAGTCAAACTT
Locus tag: YberA_01001487
YberA_01001487 -75 3.4 CTAATTGATTTACATCAAGAAG
-4 3.5 AAAAATGAGCAAAGTCAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirB
Ortholog function: nitrite reductase (NAD(P)H) subunit
Escherichia coli str. K-12 substr. MG1655 b3365 -124 3.2 AAAATTTATACAAATCAGCAAT
-76 3.4 GAATTTGATTTACATCAATAAG
Salmonella typhimurium LT2 STM3474 -76 3.4 GAATTTGATTTACATCAATAAG
Citrobacter koseri ATCC BAA-895 CKO_04789 -76 3.4 GAATTTGATTTACATCAATAAG
Enterobacter sp. 638 Ent638_3793 -76 3.3 GTATTTGATTTGCATCAATAAG
Yersinia pestis KIM y3945 -75 3.7 CAAATTGATTTACATCAAGAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4079 -186 4.2 AAGCGTGCTATAGATCTCACTT
Proteus mirabilis HI4320 PMI1479 -129 3.5 TTTTGTGCACTTTATTAACAAT
Position: 3
Score: 3.8
Sequence: TATAGTGACACCATCAACAAAT
Locus tag: YberA_01001489
YberA_01001489 3 3.8 TATAGTGACACCATCAACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirC
Ortholog function: nitrite transporter NirC
Escherichia coli str. K-12 substr. MG1655 b3367 -124 3.2 AAAATTTATACAAATCAGCAAT
-76 3.4 GAATTTGATTTACATCAATAAG
Enterobacter sp. 638 Ent638_3795 -76 3.3 GTATTTGATTTGCATCAATAAG
Position: -146
Score: 4.5
Sequence: CAATGTGATCAAGTTCTAATAA
Locus tag: YberA_01001504
YberA_01001504 -146 4.5 CAATGTGATCAAGTTCTAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nudE
Ortholog function: ADP compounds hydrolase NudE (EC 3.6.1.-)
Escherichia coli str. K-12 substr. MG1655 b3397 -53 3.7 AAGCGTGTCCGATATCGCACAA
Citrobacter koseri ATCC BAA-895 CKO_04820 -54 4.1 AACCGTGCTGTATATCGCACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03768 -54 4 AAGCGTGTTGCGTATCGCACAA
Enterobacter sp. 638 Ent638_3810 -55 3.6 AACCGTGCGTCATATCGCACAA
Yersinia pestis KIM y3923 -247 4.5 CAATGTGATCAAGTTCTAATAT
Serratia proteamaculans 568 Spro_4612 -135 4.4 CAATGTGATCAAGATCGGATTT
Edwardsiella tarda EIB202 ETAE_3268 -116 3.6 AAATATGAGCATCTGCGCACAA
Position: -130
Score: 3.9
Sequence: ATCCGTGTTCTATCTCTCATAA
Locus tag: YberA_01001509
YberA_01001509 -130 3.9 ATCCGTGTTCTATCTCTCATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pck
Ortholog function: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Escherichia coli str. K-12 substr. MG1655 b3403 -240 4.2 GAATGCGATTCCACTCACAATA
-137 4 TTTCGTGACAGGAATCACGGAG
Salmonella typhimurium LT2 STM3500 -241 4 GAATGCGATTACAGTCACATTA
-107 3.9 AATCGTGATTTTGTCCAGATAC
Citrobacter koseri ATCC BAA-895 CKO_04825 -107 3.9 AATCGTGATTTTGTCCAGATAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03773 -242 3.7 GAAAGCGATTACATTCACATTT
-138 3.7 CTTCGTGACAGGAGTCACCGTT
Enterobacter sp. 638 Ent638_3816 -241 4.1 GTATGCGATTACATTCACATTA
Yersinia pestis KIM y3918 -130 4.2 ATTCGTGTTCCATCTCTCATAA
-80 3.8 ATATTTGATAGCTATCGCTGTT
Serratia proteamaculans 568 Spro_4617 -80 4.1 ATATTTGATACCTATCGCGGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4106 -81 4 TTTTATGATTGCTATCGCGGTT
Edwardsiella tarda EIB202 ETAE_3277 -82 3.9 TTTTTTGATGACTATCTCGGTT
Proteus mirabilis HI4320 PMI3015 -131 4 ATTTGTGCATTAGTTCTCGTTA
Photorhabdus luminescens subsp. laumondii TTO1 plu0100 -86 3.8 TTTTTTGATAACTATCGCTGTT
Position: -161
Score: 4.2
Sequence: AAATGTGCTGGGTTTCATGATT
Position: -149
Score: 3.3
Sequence: TTTCATGATTTTGGTCAAGGTC
Locus tag: YberA_01001522
YberA_01001522 -161 4.2 AAATGTGCTGGGTTTCATGATT
-149 3.3 TTTCATGATTTTGGTCAAGGTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhR
Ortholog function: Transcriptional repressor for pyruvate dehydrogenase complex
Escherichia coli str. K-12 substr. MG1655 b0113 -156 3.7 AAACGTTATATATGTCAAGTTG
-131 3.8 AAATGTGCACAGTTTCATGATT
Salmonella typhimurium LT2 STM0151 -157 3.5 AAACATGATTTCTGTAAAATTG
-120 3.2 TTTACTGATTTCAATCAAAACC
-79 3 CTTATTAAGCTTTCTCACGAAA
-54 3.4 TAATGGGACAGGTTCCAGATAA
Citrobacter koseri ATCC BAA-895 CKO_03260 -180 3.2 ATTTGTGCATAGTTACATCTTT
-157 3.1 AAACGTTATTTCTGTAATCTTG
-148 3.3 TTCTGTAATCTTGTTAAAATGT
-120 3.2 TTTACTGATTTCAATCAAAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00117 -155 3.2 AAATGTTATTTCTGTAAGGTTG
-118 3.2 TTTACTGATTTCAATCAAAACC
Enterobacter sp. 638 Ent638_0659 -120 3.2 TTTACTGATTTCAATCAAAACC
-77 3.1 TATTGTATTTTCTGGCGAAAAT
-68 3 TTTAGCGATACGAATATGAAAT
Erwinia amylovora ATCC 49946 EAM_0746 -198 3.3 TAAAGCGATCGGATTTAACAAT
Yersinia pestis KIM y0766 -151 4.2 AAATGTGCTGGGTTTCATGATT
-139 3.3 TTTCATGATTTCGGTCAAGGTC
-74 3.4 TTTTGAAATTGGTATTACCAAT
Serratia proteamaculans 568 Spro_4012 -132 3.1 AAATGTGCGGGTAACCTGATTT
-56 3.4 TTTTGAAATTGGTATTACCAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3790 -120 3.7 ATTGGTGATTTAGCTCAAGGTC
-55 3.4 TTTTGAAATTGGTATTACCAAT
Edwardsiella tarda EIB202 ETAE_0658 -143 3.2 TTTCATGATTTACATCAATAGT
Proteus mirabilis HI4320 PMI2047 -218 3.1 TGTTTTTAATCTTTTCTAATAA
-199 4.4 TAATGCGATCTAGTTATCAAAT
-181 4.2 AAATTTGATGAATTTATCAAAT
-158 3 ATTTGTTAAAATTTGCAGGTTT
-138 3.9 TTTTATGATTTCGCTCAACAAC
-95 3.1 CTTTGTTACTTTATTATCCATT
-89 3.1 TACTTTATTATCCATTACATTA
Position: -265
Score: 5.2
Sequence: TTATGTGATCCGTTACACATTT
Locus tag: YberA_01001601
YberA_01001601 -265 5.2 TTATGTGATCCGTTACACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpI
Ortholog function: ATP synthase subunit I
Escherichia coli str. K-12 substr. MG1655 b3739 -263 4.8 ATATGTGATCTGAAGCACGCTT
Salmonella typhimurium LT2 STM3872 -262 4.6 ATGTGTGATCTGGTGCACGCTT
-211 4.1 TTTTGTACGATCGTTCACACTT
Citrobacter koseri ATCC BAA-895 CKO_00079 -262 4.7 ATATGTGATCCGAAGCACGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04144 -262 4.7 TTATGTGATCTGATGCACGCTT
Enterobacter sp. 638 Ent638_4125 -261 4.8 TTTTGTGATCTCGTGCACGCTT
Erwinia amylovora ATCC 49946 EAM_3481 -264 4.4 ATTTGTGATCGTGGACACGCTT
Yersinia pestis KIM y4142 -263 5.4 TTATGTGATGTATTTCACGTTT
Serratia proteamaculans 568 Spro_0001 -265 4.4 TATTGTGAGCAACTACACGTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4519 -254 5 TTATGTGAGTCACATCACAGAT
Edwardsiella tarda EIB202 ETAE_3526 -297 3.7 AATCGTGAAAATATTTAAATTA
Proteus mirabilis HI4320 PMI3057 -259 5 TTGTGTGTTCTAGATCACATTA
Photorhabdus luminescens subsp. laumondii TTO1 plu0047 -265 5.7 TTATGTGATTTAAATCACATTT
Position: -168
Score: 4.4
Sequence: AAACGTGACTGCCATCAAACAT
Locus tag: YberA_01001657
YberA_01001657 -168 4.4 AAACGTGACTGCCATCAAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ptsG
Ortholog function: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655 b1101 -154 4.4 AAACGTGATAGCCGTCAAACAA
Salmonella typhimurium LT2 STM1203 -155 4.4 AAACGTGATAGCCGTCAAACAA
Citrobacter koseri ATCC BAA-895 CKO_01957 -229 4.4 AAACGTGATAGCCGTCAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01099 -155 4.4 AAACGTGATAGCCGTCAAACAA
Enterobacter sp. 638 Ent638_1616 -155 4.4 AAACGTGATAGCCGTCAAACAA
Erwinia amylovora ATCC 49946 EAM_1466 -162 4.6 AAACGTGATAGCCATCAAACAA
Yersinia pestis KIM y1767 -166 4.4 AAACGTGACGGCAATCAAACAT
Serratia proteamaculans 568 Spro_1914 -164 4.4 AAACGTGACTGTCATCAAACAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1805 -162 4.6 AAACGTGATAGCAATCAAACAT
Proteus mirabilis HI4320 PMI2292 -156 4.5 AAACGTGACAGCTATCATATAT
Position: -223
Score: 3.9
Sequence: AATTGTGACGAAATGCTAACTA
Position: -153
Score: 3.8
Sequence: AAAGTTGATATATATCAATTTT
Locus tag: YberA_01001669
YberA_01001669 -223 3.9 AATTGTGACGAAATGCTAACTA
-153 3.8 AAAGTTGATATATATCAATTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Escherichia coli str. K-12 substr. MG1655 b1109 -154 3.9 AAACTTGATTAACATCAATTTT
Salmonella typhimurium LT2 STM1211 -154 4.1 AAACTTGATGCACATCAATTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01106 -152 4.1 AAACTTGATGCACATCAATTTT
Enterobacter sp. 638 Ent638_1624 -153 4 AAACTTGATTCATATCAATTTT
Erwinia amylovora ATCC 49946 EAM_1473 -55 3.7 TAAGGTTATTTTATTAACCTTT
Yersinia pestis KIM y1777 -152 3.8 AAAGTTGATATATATCAATTTT
Serratia proteamaculans 568 Spro_1926 -153 4.3 AAGTTTGATGTACATCAATTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1815 -153 4 TAAATTGATATATATCAATTTT
Edwardsiella tarda EIB202 ETAE_2070 -166 4.3 TTATTTGATTTGAATCAATTTT
Proteus mirabilis HI4320 PMI0875 -157 4.6 TTTTTTGATATAAATCAACTTT
Photorhabdus luminescens subsp. laumondii TTO1 plu2821 -154 3.8 GAATTTGATGTTGTTCAATTTT
Position: -262
Score: 4.6
Sequence: TTAAGTGATGGATATCACAGTC
Locus tag: YberA_01001755
YberA_01001755 -262 4.6 TTAAGTGATGGATATCACAGTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadL
Ortholog function: Long-chain fatty acid transport protein
Escherichia coli str. K-12 substr. MG1655 b2344 -269 4.8 ATAAGTGACCGAAATCACACTT
-247 3.9 AAAAATGATCTAAAACAAAATT
Salmonella typhimurium LT2 STM2391 -262 4.8 TTAAGTGACCGAAATCACACTT
-240 3.9 AAAAATGATCTAAAACAAAAAT
Citrobacter koseri ATCC BAA-895 CKO_00446 -263 4.8 ATAAGTGACCGAAATCACACTT
-241 3.9 AAAAATGATCTAAAACAAAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02726 -264 4.7 TTAAGTGACAGAAATCACACTT
-242 3.9 AAAAATGATCTAAAACAAAAAT
Enterobacter sp. 638 Ent638_2884 -269 4.2 GTAAGTGACCGATATCACACTA
-247 4 AAAAATGATCTAGCGCAAAAAT
-214 3.7 ATGAGTGCGACGGCTCGCATTT
Erwinia amylovora ATCC 49946 EAM_2348 -194 3.9 TTTTGTTAAGCAGATCTCTTTT
Serratia proteamaculans 568 Spro_3381 -271 5.1 TTAAGTGATGGAAATCACAAAT
-196 3.8 TTTTGTTAGCCAGATCTCTCTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3081 -332 3.8 AATTTTTATCTTCCTTATATTT
-262 4.9 TTTAGTGATATCAGTCACATTA
Proteus mirabilis HI4320 PMI1810 -326 3.7 AAGTGTTAATTATCTATCATAA
-186 4.2 TAATGTTAACTAAATCCCAAAT
Position: -229
Score: 4.2
Sequence: TATGCTGATCGCTATCACAAAA
Locus tag: YberA_01001772
YberA_01001772 -229 4.2 TATGCTGATCGCTATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ascF
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b2715 -177 4.2 TCAGGTGACCGGTTTCACAAAT
Citrobacter koseri ATCC BAA-895 CKO_04070 -179 4.4 ACAAGTGATCATTCTCACAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03051 -168 4.1 CTTAGCGATCAAAATCACAAAA
Enterobacter sp. 638 Ent638_3188 -128 4.4 CAAAGTGATCGTTATCACGAAT
-54 3.7 TTTTGTGAAACCGGTTTCCTAT
Serratia proteamaculans 568 Spro_0576 -189 4.4 AAAAGTGACCACCATCACGAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2165 -255 3.9 CATGGCGATCGTGGTCACATAA
-212 3.9 TATTGAAATCGCACTCATATAT
Position: -266
Score: 4.1
Sequence: TAATGTGATGTGGCGTGAATTT
Locus tag: YberA_01001828
YberA_01001828 -266 4.1 TAATGTGATGTGGCGTGAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: putP
Ortholog function: Proline/sodium symporter PutP (TC 2.A.21.2.1)
Escherichia coli str. K-12 substr. MG1655 b1015 -207 3.6 AAATGTGAGAGAGTGCAACCTG
Salmonella typhimurium LT2 STM1125 -204 3.6 AAATGTGAGAGAGTGCAACCTG
Citrobacter koseri ATCC BAA-895 CKO_02041 -80 3.6 AAATGTGAGAGAGTGCAACCTG
Enterobacter sp. 638 Ent638_1542 -249 3.7 TTTTATGCGGCACTTAACACTT
Serratia proteamaculans 568 Spro_2930 -211 3.9 AAATGTGACGCAGGGTAAACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4218 -130 3.7 TTGTGCAACCTTGTTAACAAAT
Proteus mirabilis HI4320 PMI1615 -220 3.8 TAGTGTGAAGTTACATACAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1958 -243 4.4 AAATGTGATTCAGTAAACGTTT
Position: -298
Score: 3.6
Sequence: TTGTTTGATAAGGAACAAAAAC
Position: -145
Score: 3.9
Sequence: AAATGCGCCATCACTCACAGAT
Locus tag: YberA_01001848
YberA_01001848 -298 3.6 TTGTTTGATAAGGAACAAAAAC
-145 3.9 AAATGCGCCATCACTCACAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpT
Ortholog function: glycerol-3-phosphate transporter
Escherichia coli str. K-12 substr. MG1655 b2240 -219 3.7 TTGTTTGATTTCGCGCATATTC
-179 3.6 AAACGTGATTTCATGCGTCATT
-129 4.6 ATGTGTGCGGCAATTCACATTT
Salmonella typhimurium LT2 STM2283 -220 3.6 ATGTTTGATTTCGCGCATAATC
-180 4.2 AAACGTGATTTCGTGCGCCTTT
-131 5.2 ATATGTGCTGTAATTCACATTA
Citrobacter koseri ATCC BAA-895 CKO_00537 -221 3.6 TTGTTTGATTTCGCGCATAATC
-181 4 AAACGTGATTTCGTGCGCTTTT
-132 4.8 ATCTGTGCTGTAATTCACATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02646 -218 3.8 TTGTTTGATTTCGAGCATATTC
-178 4.6 TTATGTGATTTCGTGCTCACAT
-128 4.5 AATTGTGCGATGTTTCACAGTA
Enterobacter sp. 638 Ent638_2804 -201 3.6 TTGTTTGATTTCGAACATAATC
-161 3.8 AAGCGTGATCTCATGCGCTTAT
-111 4 ATCTGTGCGTTGATTCACAGTA
Erwinia amylovora ATCC 49946 EAM_0195 -240 3.7 AAACGCGATGCGGTTAACGATG
-147 3.7 ATTTGTGCCTCTCTTCACGGTC
Serratia proteamaculans 568 Spro_0199 -249 4.5 GAATGTGATCATAATCACGATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4166 -253 3.7 ATGTTTGATAAAGAGCAAAAAC
-193 4.9 AAGTGTGATTTGCATCACTAAA
Edwardsiella tarda EIB202 ETAE_3116 -200 3.7 ATATGAGCGATCTCTCACAGTA
Proteus mirabilis HI4320 PMI3591 -291 3.6 ATGTTTGATAATGAGCAAAAAC
-232 5.4 ATATGTGATACTAATCACAAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4119 -250 4.9 TATTGTGACAATTGTCACAATT
Position: -265
Score: 3.2
Sequence: AAAAATTATATTTATCACTATG
Position: -79
Score: 3.6
Sequence: ATGTTTGCTTTCGAACAAAATT
Locus tag: YberA_01001879
YberA_01001879 -265 3.2 AAAAATTATATTTATCACTATG
-79 3.6 ATGTTTGCTTTCGAACAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ugpB
Ortholog function: Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3)
Escherichia coli str. K-12 substr. MG1655 b3453 -182 3.6 ATCCGTGCCCCATCTCCCATTT
Salmonella typhimurium LT2 STM3557 -184 3.5 ATCCGTGCCGTAGCTCCCACTT
Citrobacter koseri ATCC BAA-895 CKO_04874 -185 3.3 TATTTTTCTGTCATTCGCGCAT
-162 3.2 TCATGTTACCTCGCGAGCATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03813 -88 3.4 TATTTTTCTGTAATTCGAACAT
Enterobacter sp. 638 Ent638_3856 -162 3.5 AGTTATTATTCCCGCCACATTA
-58 3.2 TCATGTTACCTCGCGAGCATAA
Erwinia amylovora ATCC 49946 EAM_3285 -171 3.9 GTGTGTGATGCCGTTAACACAG
Yersinia pestis KIM y0434 -72 3.5 AAAACTGATTTATTTCGCTCAT
-41 4.1 TTTTTTGATGTGAGCCACACAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2429 -145 3.5 TATCGCGATACAGTTCATCACT
Edwardsiella tarda EIB202 ETAE_3321 -63 3.4 CAATATGTTGTTTATCACTCAA
Position: -148
Score: 5.5
Sequence: ATATGTGATCTTGTTCACAGTT
Locus tag: YberA_01001889
YberA_01001889 -148 5.5 ATATGTGATCTTGTTCACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: udp
Ortholog function: Uridine phosphorylase (EC 2.4.2.3)
Escherichia coli str. K-12 substr. MG1655 b3831 -144 5.2 TTATGTGATTTGCATCACTTTT
-92 4.2 CATGGTGATGAGTATCACGAAA
Salmonella typhimurium LT2 STM3968 -144 5.1 TATTGTGATGAACATCACTTTT
-92 4.1 CATAGTGATGGCTGTCACGAAA
Citrobacter koseri ATCC BAA-895 CKO_00173 -143 5.2 TTATGTGATGTAAATCACTATT
-91 3.9 CATGGTGATGAGCGTCACGAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04327 -143 5.2 TAATGTGATGTGTATCACTATT
-91 4.1 CTTGGTGACTATCATCACAAAA
Enterobacter sp. 638 Ent638_3962 -143 4.7 TAGTGTGATGCATGTCACTATT
Erwinia amylovora ATCC 49946 EAM_0200 -143 4.6 AATTGCGACTTGTATCACCTTT
-90 4 ATTAAGGATGTTCATCACATAA
Yersinia pestis KIM y0444 -149 5.4 ATGTGTGATTTAAATCACAATT
-97 4 CAAGGTGACATAAATCACGAAA
Serratia proteamaculans 568 Spro_0244 -143 5.3 TTTTGTGACTTTAATCACAAAA
-125 3.7 AAAAGTTATGTAGATTGCATTC
-91 4.1 CATAGTGATGGTTGTCACGAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0185 -197 5.1 AAAAGTGATTTAAGTCACATTT
Edwardsiella tarda EIB202 ETAE_0143 -148 4.7 TATTGTGAAAATAATCACAGTT
Proteus mirabilis HI4320 PMI3532 -145 5.1 ATTTGTGATAACTATCACGTTT
-93 3.6 ACAGGTGACGTCAATCACTAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4417 -271 5.2 TTTTGTGATTTATATCTCAAAA
-219 4 TGAAGTGACATTTATCACTAAA
Position: -66
Score: 4
Sequence: AGGTGTTAGATTGATCACGTTT
Locus tag: YberA_01001928
YberA_01001928 -66 4 AGGTGTTAGATTGATCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyaA
Ortholog function: Adenylate cyclase (EC 4.6.1.1)
Yersinia pestis KIM y0382 -151 4 AGGTGTTAGATTGATCACGTTT
Serratia proteamaculans 568 Spro_0179 -115 4 AGGTGTTAGATTGATCACGTTT
Edwardsiella tarda EIB202 ETAE_0119 -119 4 AGGTGTTAAATTGATCACGTTT
Position: -309
Score: 4.2
Sequence: AAACGTGATCAATCTAACACCT
Locus tag: YberA_01001929
YberA_01001929 -309 4.2 AAACGTGATCAATCTAACACCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemC
Ortholog function: porphobilinogen deaminase
Escherichia coli str. K-12 substr. MG1655 b3805 -236 4.2 AAACGTGATCAATTTAACACCT
Salmonella typhimurium LT2 STM3938 -219 4.2 AAACGTGATCAATTTAACACCT
Citrobacter koseri ATCC BAA-895 CKO_00147 -220 4.2 AAACGTGATCAATTTAACACCT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04304 -232 4.2 AAACGTGATCAATTTAACACCT
Enterobacter sp. 638 Ent638_3987 -211 4.2 AAACGTGATCAATCTAACACCT
Serratia proteamaculans 568 Spro_0178 -223 4.2 AAACGTGATCAATCTAACACCT
Edwardsiella tarda EIB202 ETAE_0118 -205 4.2 AAACGTGATCAATTTAACACCT
Position: -36
Score: 3.9
Sequence: TTATGTTATCGAGATAAATATT
Locus tag: YberA_01001965
YberA_01001965 -36 3.9 TTATGTTATCGAGATAAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: garD
Ortholog function: D-galactarate dehydratase
Escherichia coli str. K-12 substr. MG1655 b3128 -210 4.2 TATTTTGAGCATATGCACATAA
-127 4.4 ATGATTGACATTGATCACATTT
-52 3.7 AAATGAGACCAGGTCCTCATTT
Salmonella typhimurium LT2 STM3250 -153 4.3 TGCGGTGATCTGGATCACATTC
Citrobacter koseri ATCC BAA-895 CKO_04527 -54 4 AGTTGTTCTCTTTAACACATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03540 -125 4.8 AGGAGTGATGCCGATCACATTT
Enterobacter sp. 638 Ent638_3570 -143 4.7 AGGGGTGATCTTGATCACATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3578 -296 4.2 TAGTGCGAGGTATTTCACGAAA
-204 5.1 AAATGTGATCAAACTCACCAAA
Position: -309
Score: 4.9
Sequence: AATAGCGATCCAGATCACATTA
Position: -249
Score: 4.3
Sequence: AATTGTGATGTTAACCCCATTG
Locus tag: YberA_01001966
YberA_01001966 -309 4.9 AATAGCGATCCAGATCACATTA
-249 4.3 AATTGTGATGTTAACCCCATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: garP
Ortholog function: d-galactonate transporter
Escherichia coli str. K-12 substr. MG1655 b3127 -269 4.4 AAATGTGATCAATGTCAATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03539 -289 4.5 AAATGTGATCGGCATCACTCCT
Enterobacter sp. 638 Ent638_3569 -291 4.7 AAATGTGATCAAGATCACCCCT
Position: -225
Score: 4.6
Sequence: AACTGTGAGTGAAATCACAGAT
Locus tag: YberA_01001971
YberA_01001971 -225 4.6 AACTGTGAGTGAAATCACAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aspA
Ortholog function: aspartate ammonia-lyase
Escherichia coli str. K-12 substr. MG1655 b4139 -206 4.5 AGCGGTGATCTATTTCACAAAT
-156 4.2 TAAAGTGATCCAGATTACGGTA
Salmonella typhimurium LT2 STM4326 -209 4.2 AGCGGTGACCTATTTCACAAAA
-159 4.2 TTAAGTGATCCAGATTACGGTA
Citrobacter koseri ATCC BAA-895 CKO_03696 -54 4.2 AGCGGTGACCTATTTCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04529 -204 3.9 AGCGGTGACCCATTTCACAGAT
-154 3.8 ATAAGTGATCAAGCTTACTGAT
Enterobacter sp. 638 Ent638_0326 -205 4.1 AGCGGTGATTCATTTCACAGAT
Erwinia amylovora ATCC 49946 EAM_0416 -228 4.2 CAATGTGACCTGGAACAGATAT
Yersinia pestis KIM y0606 -224 4.6 AAGTGTGAGAGCAATCACAGAT
Serratia proteamaculans 568 Spro_0406 -205 4.7 AAACGTGAATGAGATCACAGAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0621 -272 4 ACTCGTGACTACAATCACAGTT
Edwardsiella tarda EIB202 ETAE_0311 -197 4.4 ATCTGTGAGTATTATCACAGAT
Proteus mirabilis HI4320 PMI2546 -206 4.1 ATCCATGAGATAGATCACAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4137 -274 3.8 AGATATAATTGGGGTCACAGTT
-211 5.6 AATTGTGATAAATATCACATAT
Position: -317
Score: 4.8
Sequence: ATCTGTGATTTCACTCACAGTT
Locus tag: YberA_01001972
YberA_01001972 -317 4.8 ATCTGTGATTTCACTCACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fxsA
Ortholog function: suppressor of F plamsid exlusion of phage T7
Escherichia coli str. K-12 substr. MG1655 b4140 -202 4.1 TACCGTAATCTGGATCACTTTA
-152 4.3 ATTTGTGAAATAGATCACCGCT
Salmonella typhimurium LT2 STM4327 -203 4.1 TACCGTAATCTGGATCACTTAA
-153 4.1 TTTTGTGAAATAGGTCACCGCT
Citrobacter koseri ATCC BAA-895 CKO_03695 -156 4.1 TTTTGTGAAATAGGTCACCGCT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04530 -140 3.7 ATCTGTGAAATGGGTCACCGCT
Enterobacter sp. 638 Ent638_0327 -151 3.8 ATCTGTGAAATGAATCACCGCT
Erwinia amylovora ATCC 49946 EAM_0417 -161 3.9 ATATCTGTTCCAGGTCACATTG
Yersinia pestis KIM y0607 -245 4.8 ATCTGTGATTGCTCTCACACTT
Serratia proteamaculans 568 Spro_0407 -117 4.9 TTCTGTGATCTCATTCACGTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0623 -245 3.7 AACTGTGATTGTAGTCACGAGT
-185 3.6 AAATGTGCAAAGGCGCACCCAT
Edwardsiella tarda EIB202 ETAE_0312 -189 4.6 ATCTGTGATAATACTCACAGAT
Proteus mirabilis HI4320 PMI2545 -188 4.7 TTTTGTGATCTATCTCATGGAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4136 -188 5.6 ATATGTGATATTTATCACAATT
Position: -279
Score: 4.5
Sequence: TTTTGCGATAACCATCACATTG
Locus tag: YberA_01002042
YberA_01002042 -279 4.5 TTTTGCGATAACCATCACATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: chbB
Ortholog function: N,N'-diacetylchitobiose-specific PTS system , EIIB component
Yersinia pestis KIM y1251 -214 4.5 TTTTGCGATAACCATCACATTG
Serratia proteamaculans 568 Spro_0834 -177 4.6 ATTTGCGAGACAGATCACACTA
-143 3.6 AAATGTGAAGAGGGTCAATCAG
Position: 0
Score: 3.6
Sequence: ATGTTTGATTTAGATAAAATCG
Locus tag: YberA_01002045
YberA_01002045 0 3.6 ATGTTTGATTTAGATAAAATCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: chbA
Ortholog function: N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA
Escherichia coli str. K-12 substr. MG1655 b1736 -201 3.7 AAATGTGAAGAGGGTCATAACC
Salmonella typhimurium LT2 STM1314 -250 3.9 TTTTGTGCCTGCCATAACCTTA
-203 3.9 AAATGTGAGGGGGGTCATAACG
Citrobacter koseri ATCC BAA-895 CKO_01761 -188 4.1 AAATGTGAGAGGGGTCATAACA
Enterobacter sp. 638 Ent638_1708 -129 3.9 AATTTTGATTAACCGCGAATTA
Yersinia pestis KIM y1253 -214 4.5 TTTTGCGATAACCATCACATTG
Position: -310
Score: 4
Sequence: ATTTGAGAGCAGGATCACGGTA
Locus tag: YberA_01002108
YberA_01002108 -310 4 ATTTGAGAGCAGGATCACGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdaC
Ortholog function: Serine transporter
Escherichia coli str. K-12 substr. MG1655 b2796 -179 4.2 ATTTGAGATCAAGATCACTGAT
Salmonella typhimurium LT2 STM2970 -176 4.2 ATTTGAGATCGGGATCACTGAT
Citrobacter koseri ATCC BAA-895 CKO_04152 -176 4.1 ATTTGGGATCGCGATCACTGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03139 -158 4.2 ATTTGAGATCGCGATCACTGAT
Enterobacter sp. 638 Ent638_3249 -176 4.1 ATTTGGGATCAGGATCACTGAT
Erwinia amylovora ATCC 49946 EAM_1294 -300 3.6 ATTTGTTAAAAATCGCAAAAAA
-180 3.9 AAATGTGATTCCGATCACCGGC
Yersinia pestis KIM y2862 -286 4.3 AATTGAGATCACGATCACGGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3158 -195 3.7 TTCTGTGATCGCCTCAATATTA
Proteus mirabilis HI4320 PMI0672 -283 4.3 ATTTGAGATGGTGATCACGGTA
Position: -147
Score: 4.5
Sequence: ATTGGTGATTTAAGTCACGTTT
Position: -95
Score: 3.7
Sequence: TAATGTGATCTGAGTTGATAAA
Locus tag: YberA_01002161
YberA_01002161 -147 4.5 ATTGGTGATTTAAGTCACGTTT
-95 3.7 TAATGTGATCTGAGTTGATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycdZ
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b1036 -52 4 AAATGTGTGCTCGATCTCATTC
-50 3.7 ATGTGTGCTCGATCTCATTCAT
Citrobacter koseri ATCC BAA-895 CKO_02033 -40 3.9 AAATGTGTGCGTGATCTCATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01059 -52 4.1 TACTGTGTTTTAGATCGCATTC
Serratia proteamaculans 568 Spro_3290 -125 4.2 TTTTGTGACAAATTCCACATCT
-96 3.6 TATCTTGTTTCTCATTACATAT
-73 4.6 TTATGTGAAATACATCACATGA
Edwardsiella tarda EIB202 ETAE_2360 -124 4.3 AAGTGTGATTGATGTCACTTTG
-72 3.6 CGGTGTGATGTCCATCAATGAA
Proteus mirabilis HI4320 PMI3124 -240 3.7 ATTAATAATATATATCAAACAA
Position: -250
Score: 5.1
Sequence: TAAAGTGATCTGCATCACAGTT
Locus tag: YberA_01002164
YberA_01002164 -250 5.1 TAAAGTGATCTGCATCACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: idnO
Ortholog function: 5-keto-D-gluconate-5-reductase
Escherichia coli str. K-12 substr. MG1655 b4266 -81 5.1 TGACGTGATCTTCATCACAAAT
Salmonella typhimurium LT2 STM4483 -81 4.3 CAGCGTGACATAAGTCACAAAT
Citrobacter koseri ATCC BAA-895 CKO_02793 -140 5.4 TAATGTGACATGTTTCACAAAT
Position: -272
Score: 4.9
Sequence: AACTGTGATGCAGATCACTTTA
Locus tag: YberA_01002165
YberA_01002165 -272 4.9 AACTGTGATGCAGATCACTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: idnR
Ortholog function: DNA-binding transcriptional repressor, 5-gluconate-binding
Escherichia coli str. K-12 substr. MG1655 b4264 -81 5.1 TGACGTGATCTTCATCACAAAT
Salmonella typhimurium LT2 STM4481 -81 4.3 CAGCGTGACATAAGTCACAAAT
Citrobacter koseri ATCC BAA-895 CKO_02791 -140 5.4 TAATGTGACATGTTTCACAAAT
Position: -264
Score: 3.9
Sequence: TGGTGCGATTTGCGTCTCAAAA
Locus tag: YberA_01002188
YberA_01002188 -264 3.9 TGGTGCGATTTGCGTCTCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnH2
Ortholog function: glutamate and aspartate transporter subunit
Yersinia pestis KIM y1189 -268 3.8 TGGTGCGATTCGTGTCTCAAAA
Proteus mirabilis HI4320 PMI0437 -142 4 TATTGAGAGATAGCTCTCGTAT
Position: -151
Score: 4.3
Sequence: TTATGTGAACGAATTAACACTG
Locus tag: YberA_01002251
YberA_01002251 -151 4.3 TTATGTGAACGAATTAACACTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: acnB
Ortholog function: Aconitate hydratase 2 (EC 4.2.1.3)
Escherichia coli str. K-12 substr. MG1655 b0118 -144 3.5 TTTTGTAAACAGATTAACACCT
Salmonella typhimurium LT2 STM0158 -157 3.9 TTTTGTAAACAGATTAACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00124 -260 3.5 TTTTGTAAACAGATTAACACCT
Yersinia pestis KIM y0771 -276 4.3 TTATGTGAACGAATTAACACTG
Serratia proteamaculans 568 Spro_4008 -192 3.9 TTATGTGAACGAATTAACAACC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3778 -163 4.3 TTATGTGAACGAATTAACAATC
Proteus mirabilis HI4320 PMI2040 -177 4.5 TTATGTGAACGAATTAACATAG
Photorhabdus luminescens subsp. laumondii TTO1 plu3619 -261 3.6 TTCTGTGAACGAATTAACATCG
Position: -325
Score: 4.4
Sequence: ATACGTGATCTGCCTTGCAAAT
Position: -262
Score: 4.3
Sequence: CAATGTTAAGTGGGTCACAATA
Locus tag: YberA_01002266
YberA_01002266 -325 4.4 ATACGTGATCTGCCTTGCAAAT
-262 4.3 CAATGTTAAGTGGGTCACAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: malE
Ortholog function: maltose ABC transporter periplasmic protein
Yersinia pestis KIM y0028 -286 4.2 TATTGTGCCTAACACCACAAAA
-257 4 CAGTGTTAACTGAGTCACAATA
Serratia proteamaculans 568 Spro_4472 -199 4 ATCTGTGATCTGCCTGGCAAAA
-165 3.6 TTTTGTGTCTGACGCCACAGAA
-136 4.4 CAATGTTAACTGGATCACACTA
Position: -80
Score: 3.6
Sequence: AAAAGAGATCTCAATCACACCC
Locus tag: YberA_01002270
YberA_01002270 -80 3.6 AAAAGAGATCTCAATCACACCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pgi
Ortholog function: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Salmonella typhimurium LT2 STM4221 -61 3.7 TTCTGTGACTGGCGTTACAATC
Citrobacter koseri ATCC BAA-895 CKO_03893 -61 4.1 TTTTGTGACTGGCGTTACAATC
Serratia proteamaculans 568 Spro_4477 -80 3.7 AAAAGAGATCATAATCACAGTC
Proteus mirabilis HI4320 PMI2754 -245 3.7 CAGTGAGATGTTAAACACAGTT
Photorhabdus luminescens subsp. laumondii TTO1 plu4379 -205 3.8 TGACGCGATGAGAATCATAAAA
Position: -291
Score: 3.3
Sequence: ATAAGTTATCTCACCAAAATTA
Position: -229
Score: 3.4
Sequence: ATATGTTAACGATATGATAAAT
Locus tag: YberA_01002278
YberA_01002278 -291 3.3 ATAAGTTATCTCACCAAAATTA
-229 3.4 ATATGTTAACGATATGATAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceB
Ortholog function: malate synthase A
Escherichia coli str. K-12 substr. MG1655 b4014 -117 3.6 AATTGTTTTTGATTTTGCATTT
Salmonella typhimurium LT2 STM4183 -168 3.3 TTAATTTATATTGTTATCAATA
Citrobacter koseri ATCC BAA-895 CKO_03906 -166 3.3 TATTTTTATTGTTATCAATAAG
Yersinia pestis KIM y0015 -254 3.3 ATGAGTTATAGCCATTAAAAAT
Serratia proteamaculans 568 Spro_4503 -228 3.5 TGTTGTTATGTTTATTAACCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3991 -185 3.3 TTTTTTAATTTTAATCTTCATT
Proteus mirabilis HI4320 PMI2764 -68 3.7 ATTTTTGATTTTTGTAAAAACT
Photorhabdus luminescens subsp. laumondii TTO1 plu4396 -65 3.8 GTTTTTGATTTATTTTAAATAT
Position: -256
Score: 3.7
Sequence: TTCTGCGAGCCAGTTCGAAAAA
Position: -214
Score: 3.7
Sequence: TAATGCAAATTAGGTAACAAAT
Locus tag: YberA_01002354
YberA_01002354 -256 3.7 TTCTGCGAGCCAGTTCGAAAAA
-214 3.7 TAATGCAAATTAGGTAACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cytR
Ortholog function: transcriptional repressor
Escherichia coli str. K-12 substr. MG1655 b3934 -128 3.9 AAATTCAATATTCATCACACTT
Citrobacter koseri ATCC BAA-895 CKO_03060 -129 3.8 AAATTAAATATCCATCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04229 -162 3.6 TCTTGCGAGCCGGATCGAAAAA
-143 3.9 AAATTTAACAAGCATCACGTTT
Yersinia pestis KIM y0297 -177 3.7 TTCTGCGAGCCAGTTCGAAAAA
-135 3.6 TTATGCAAATTAGGTAACAAAT
Edwardsiella tarda EIB202 ETAE_3434 -258 4.2 AAGTGCGATCGGGATCGAAAAA
-175 3.6 ATATGTGATCATATACTCATCG
Proteus mirabilis HI4320 PMI3218 -207 4.3 TTTTGCGAACTACCTCATAAAA
-189 3.9 AAAAACGATTGGTATCACACTT
Photorhabdus luminescens subsp. laumondii TTO1 plu4760 -213 4.2 ATTTGCGAGCCATATCGAATAA
-195 4.6 ATAAATGATTTATATCACACTT
Position: -140
Score: 4.1
Sequence: TTTTATGACGCACCACACACAT
Locus tag: YberA_01002361
YberA_01002361 -140 4.1 TTTTATGACGCACCACACACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpF
Ortholog function: facilitator for glycerol uptake
Yersinia pestis KIM y0046 -139 4 TTTCATGACGAATAACACATAT
Serratia proteamaculans 568 Spro_4797 -183 4.1 TTTTATGACGAAGCACACACAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4266 -153 4.3 TTTTTTGACGCGCAACACACAT
Edwardsiella tarda EIB202 ETAE_3441 -139 3.9 TTTTTTGACGACACACACACAT
Position: -15
Score: 3.6
Sequence: AAATGTGAGCTTATTATGACAA
Locus tag: YberA_01002362
YberA_01002362 -15 3.6 AAATGTGAGCTTATTATGACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpK
Ortholog function: glycerol kinase
Escherichia coli str. K-12 substr. MG1655 b3926 -142 4 TTTTATGACGAGGCACACACAT
Salmonella typhimurium LT2 STM4086 -147 3.9 TTTATTGACGCAGTACACACAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04011 -145 3.7 TTTCTTGACGAGACACACACAT
Enterobacter sp. 638 Ent638_4047 -213 4.4 TGAAATGATTCAGCTCACATTT
-147 3.8 TTTATTGACACAGCACACACAT
Erwinia amylovora ATCC 49946 EAM_0118 -146 4.1 TTTCATGACGCGGTACACATTT
Yersinia pestis KIM y0047 -139 4 TTTCATGACGAATAACACATAT
Serratia proteamaculans 568 Spro_4798 -183 4.1 TTTTATGACGAAGCACACACAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4267 -153 4.3 TTTTTTGACGCGCAACACACAT
Edwardsiella tarda EIB202 ETAE_3442 -139 3.9 TTTTTTGACGACACACACACAT
Proteus mirabilis HI4320 PMI3210 -132 4 TTTCATGATGGGACACACAAAA
Position: -71
Score: 3.9
Sequence: TAATGTATTTTTATTCATAATT
Locus tag: YberA_01002367
YberA_01002367 -71 3.9 TAATGTATTTTTATTCATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argE
Ortholog function: acetylornithine deacetylase
Escherichia coli str. K-12 substr. MG1655 b3957 -66 3.7 TAGTGTATTTTTATTCATAAAT
Salmonella typhimurium LT2 STM4120 -66 3.9 TAATGTATTTTTATTCATAATT
Citrobacter koseri ATCC BAA-895 CKO_03037 -27 4.3 TAATGTATTTTTATTCACAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04246 -27 4 TATTGTATTTTTATTCAAAATA
Enterobacter sp. 638 Ent638_4029 -66 4.2 TAGTGTATTTTTATTCACATTT
Erwinia amylovora ATCC 49946 EAM_0137 -66 3.8 TATTGTATTTTTATTCACTATT
Yersinia pestis KIM y0309 -223 3.6 TATTTTTATTTATGTCAATAAA
Serratia proteamaculans 568 Spro_4782 -71 4.3 TATTGTATTTTTATTCACAATA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0191 -65 4 TATTGTATTTTTATTCAAAATA
Edwardsiella tarda EIB202 ETAE_3483 -65 3.9 TATTGTATTTTTATTCATAATT
Proteus mirabilis HI4320 PMI3236 -65 3.9 TAATGTATTTTTATTCAAAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4745 -65 3.9 TAATGTATTTTTATTCAAAAAA
Position: -247
Score: 3.5
Sequence: AATTATGAATAAAAATACATTA
Locus tag: YberA_01002368
YberA_01002368 -247 3.5 AATTATGAATAAAAATACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Salmonella typhimurium LT2 STM4121 -44 3.5 AATTATGAATAAAAATACATTA
Citrobacter koseri ATCC BAA-895 CKO_03036 -110 4 ATTTGTGAATAAAAATACATTA
Enterobacter sp. 638 Ent638_4028 -44 3.8 AAATGTGAATAAAAATACACTA
Yersinia pestis KIM y0310 -43 3.7 TTTATTGACATAAATAAAAATA
Serratia proteamaculans 568 Spro_4781 -167 4 TATTGTGAATAAAAATACAATA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0192 -159 3.5 TATTTTGAATAAAAATACAATA
Edwardsiella tarda EIB202 ETAE_3482 -160 3.4 AATTATGAATAAAAATACAATA
Proteus mirabilis HI4320 PMI3237 -57 3.6 TTTTTTGAATAAAAATACATTA
Photorhabdus luminescens subsp. laumondii TTO1 plu4744 -59 3.6 TTTTTTGAATAAAAATACATTA
Position: -231
Score: 4.1
Sequence: AAAGTTGAGTGATATCACAAAA
Locus tag: YberA_01002605
YberA_01002605 -231 4.1 AAAGTTGAGTGATATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxaC
Ortholog function: Uronate isomerase (EC 5.3.1.12)
Yersinia pestis KIM y3600 -229 4.1 AAAGTTGAGTGACATCACAAAA
-109 3.6 TTTTGCGATCAATATCTATAAA
Serratia proteamaculans 568 Spro_4321 -231 4.1 AAAGTTGAGTGATATCACAAAA
Position: -108
Score: 3.7
Sequence: TTATTTTATACAAAACATATAT
Locus tag: YberA_01002644
YberA_01002644 -108 3.7 TTATTTTATACAAAACATATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yafK
Ortholog function: hypothetical protein
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00238 -208 3.7 AAATGCGAGCTATTGCGCAAAG
Yersinia pestis KIM y0949 -217 3.7 TTATTTTATACAAAACATATAT
Serratia proteamaculans 568 Spro_0952 -136 4.2 TTTTTTTATACACAACACATAT
Proteus mirabilis HI4320 PMI0351 -297 3.7 AATTGTTACTATTTTCTCTTAT
-228 3.7 TCGAGTGATTTAGCTCAAGCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1195 -232 3.9 TCAAGTGATTTAGTTCAAGCAA
Position: -51
Score: 4.1
Sequence: CATCGTGATTGTGAGCGCATAA
Locus tag: YberA_01002660
YberA_01002660 -51 4.1 CATCGTGATTGTGAGCGCATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lacZ
Ortholog function: beta-D-galactosidase
Escherichia coli str. K-12 substr. MG1655 b0344 -110 4.7 TAATGTGAGTTAGCTCACTCAT
Citrobacter koseri ATCC BAA-895 CKO_02825 -110 4.4 TTGTGTGAGTCAGTTCACTCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_pKPN3p05871 -109 4.6 TAATGTGAGTCAGCTCACTCAT
Enterobacter sp. 638 Ent638_0928 -100 4.4 TTTTGTGATCGACTTCGCTTTG
Erwinia amylovora ATCC 49946 EAM_0926 -94 3.8 TGTTGCGATAGCCATCACATCC
Yersinia pestis KIM y1817 -168 4 ACATGTGCGACAGATCACATTC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1490 -149 4.1 CTTTGTGATCGCTTCCACTTTA
-92 4.5 ATATGTTATGGAAAACACAAAT
Position: -236
Score: 4.4
Sequence: TATTGTGAAGTTGGTCATGTAA
Locus tag: YberA_01002680
YberA_01002680 -236 4.4 TATTGTGAAGTTGGTCATGTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tdk
Ortholog function: Thymidine kinase (EC 2.7.1.21)
Yersinia pestis KIM y2145 -208 4.9 TATTGTGAGATTGCTCATATAA
Serratia proteamaculans 568 Spro_2705 -203 4.3 AAATGTGATGTCAGACAGAAAT
Edwardsiella tarda EIB202 ETAE_1506 -206 4 AACTGTTAGGTCGATCACTTAT
Photorhabdus luminescens subsp. laumondii TTO1 plu2497 -157 4.1 TGGTGTGATGGTGGTCATGAAT
Position: -284
Score: 5.3
Sequence: TTTTGTGATTTAAATCACGAAA
Locus tag: YberA_01002681
YberA_01002681 -284 5.3 TTTTGTGATTTAAATCACGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Escherichia coli str. K-12 substr. MG1655 b1241 -241 5 AAATTTGATTTGGATCACGTAA
Salmonella typhimurium LT2 STM1749 -242 4.9 AATCTTGATTTAGATCACACAA
Citrobacter koseri ATCC BAA-895 CKO_01318 -242 4.9 AAATTTGATCTGGATCACGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02199 -237 4.7 ATACTTGATCTAAATCACGTAA
Enterobacter sp. 638 Ent638_2304 -253 4.1 TAAATTGATTCAGATCATGTTT
Erwinia amylovora ATCC 49946 EAM_1900 -223 3.9 ATTGATGATCTGCATCATCTTT
Yersinia pestis KIM y2023 -286 5.3 TTTTGTGATTTAAATCACGAAA
Serratia proteamaculans 568 Spro_2704 -278 5.1 TTTTATGATTTAAATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -315 4.5 AAGTTCGATGTTGATCACAAAA
Edwardsiella tarda EIB202 ETAE_1508 -265 5 TTTCGTGACCTTAATCACAAAA
Proteus mirabilis HI4320 PMI1486 -246 5.4 TATTGTGATGTAGATCACTTTA
-187 3.7 AAAGGAGATCTTTTTAAAATAT
Photorhabdus luminescens subsp. laumondii TTO1 plu2496 -237 3.7 TATTTTTATTAGATTAAAAATT
-138 4.6 TTATGTGATTAAGATCAATATA
Position: -124
Score: 3.8
Sequence: AATGGTGATATTTTTTACGTTG
Position: -39
Score: 3.7
Sequence: ATCTGTGATGTATTTATCAGCA
Locus tag: YberA_01002682
YberA_01002682 -124 3.8 AATGGTGATATTTTTTACGTTG
-39 3.7 ATCTGTGATGTATTTATCAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ychE
Ortholog function: putative channel protein
Escherichia coli str. K-12 substr. MG1655 b1242 -257 5.1 TTACGTGATCCAAATCAAATTT
Salmonella typhimurium LT2 STM1748 -256 4.8 TTGTGTGATCTAAATCAAGATT
Citrobacter koseri ATCC BAA-895 CKO_01319 -167 5 TTGCGTGATCCAGATCAAATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02198 -261 4.8 TTACGTGATTTAGATCAAGTAT
Enterobacter sp. 638 Ent638_2303 -256 4 AAACATGATCTGAATCAATTTA
Erwinia amylovora ATCC 49946 EAM_1899 -158 3.8 AAAGATGATGCAGATCATCAAT
Serratia proteamaculans 568 Spro_2703 -268 5.2 TTTTGTGATTTAAATCATAAAA
Proteus mirabilis HI4320 PMI1485 -290 5.3 TAAAGTGATCTACATCACAATA
Photorhabdus luminescens subsp. laumondii TTO1 plu2495 -295 4.9 TATATTGATCTTAATCACATAA
Position: -181
Score: 3.4
Sequence: AAACGTGATTTAACGCCTGATT
Position: -61
Score: 3.3
Sequence: ATTTGGCATATCCGTCGCACTT
Locus tag: YberA_01002754
YberA_01002754 -181 3.4 AAACGTGATTTAACGCCTGATT
-61 3.3 ATTTGGCATATCCGTCGCACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hupA
Ortholog function: DNA-binding protein HU-alpha (HU-2)
Escherichia coli str. K-12 substr. MG1655 b4000 -179 3.4 AAACGTGATTTAACGCCTGATT
Citrobacter koseri ATCC BAA-895 CKO_02986 -179 3.4 AAACGTGATTTAACGCCTGATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04382 -179 3.4 AAACGTGATTTACCGCCTGAAT
Enterobacter sp. 638 Ent638_0213 -179 3.5 AAACGTGATTTAACGCCTGTTT
Yersinia pestis KIM y0499 -181 3.4 AAACGTGATTTAACGCCTGATT
Serratia proteamaculans 568 Spro_0290 -181 3.4 AAACGTGATTTAACGCCTCATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0238 -197 3.3 AAACGTGATTTAAGGCCTGAAA
Edwardsiella tarda EIB202 ETAE_0183 -182 3.3 AAACGTGATTTAACACCTGATT
Proteus mirabilis HI4320 PMI2771 -183 3.7 AAACGTGATTTAGTGCTTGAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0492 -179 3.4 AAACGTGATTTAATGCTTTAAA
Position: -112
Score: 4.9
Sequence: AATTGTGATTTGGCGCTCATAT
Locus tag: YberA_01002776
YberA_01002776 -112 4.9 AATTGTGATTTGGCGCTCATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: malX
Ortholog function: PTS family enzyme IIC/enzyme IIB
Escherichia coli str. K-12 substr. MG1655 b1621 -154 4.1 TTATGTGACAGATAAAACGTTT
-94 4.4 TAATGTGATTTATGCCTCACTA
Enterobacter sp. 638 Ent638_1827 -96 4.2 GAATGTGATTCAGAGCGCACTA
Position: -293
Score: 4.3
Sequence: TTTTGTGATGTCAGTCAAAAGT
Locus tag: YberA_01002786
YberA_01002786 -293 4.3 TTTTGTGATGTCAGTCAAAAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araF
Ortholog function: L-arabinose-binding periplasmic protein
Escherichia coli str. K-12 substr. MG1655 b1901 -163 4.2 CGATGTGATATTGCTCTCCTAT
Citrobacter koseri ATCC BAA-895 CKO_01050 -164 4 CGGTGTGATGCCGCTCTCCTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02396 -161 4 CGATGTGATAATGCTCTCGTAT
-72 3.6 TGTTTTGATGACGATTAAATTG
Enterobacter sp. 638 Ent638_2476 -162 3.7 CGGTGTGATGGCGCTCTCTTAT
Erwinia amylovora ATCC 49946 EAM_1698 -251 4.3 TTATGTGATGGCCTTCATATGT
Yersinia pestis KIM y2096 -283 4.3 TTTTGTGATGTCAGTCAAAAGT
Serratia proteamaculans 568 Spro_2245 -251 3.8 TTTTGTGACGGCTGTCATAAGT
Position: -163
Score: 4.3
Sequence: ACTTTTGACTGACATCACAAAA
Locus tag: YberA_01002787
YberA_01002787 -163 4.3 ACTTTTGACTGACATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araB
Ortholog function: L-ribulokinase
Erwinia amylovora ATCC 49946 EAM_1697 -131 4.1 ACATATGAAGGCCATCACATAA
Yersinia pestis KIM y2095 -146 4.3 ACTTTTGACTGACATCACAAAA
Serratia proteamaculans 568 Spro_2244 -132 3.9 ACTTATGACAGCCGTCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2274 -133 3.9 ACCTTTGACCAGCTTCACAAAA
Position: -164
Score: 4.5
Sequence: ATCTGTGACCCCCTTAACATAA
Locus tag: YberA_01002837
YberA_01002837 -164 4.5 ATCTGTGACCCCCTTAACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoA
Ortholog function: cytochrome o ubiquinol oxidase subunit II
Yersinia pestis KIM y1021 -137 4.5 ATCTGTGACCCCCTTAACATAA
Serratia proteamaculans 568 Spro_1090 -135 4.2 ATCTGTGACCCCCTTAACAGAA
Proteus mirabilis HI4320 PMI0108 -194 3.6 AAATTATAGTTAATTCACAATA
-147 3.6 TTAATTACTTGTGATCACATTA
-141 4.3 ACTTGTGATCACATTAACACAA
Position: -338
Score: 4
Sequence: GTTTGTGATCCCTTTCACGGTG
Locus tag: YberA_01002878
YberA_01002878 -338 4 GTTTGTGATCCCTTTCACGGTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: glutamine synthetase
Escherichia coli str. K-12 substr. MG1655 b3870 -269 4.2 CTTTGTGATCGCTTTCACGGAG
Salmonella typhimurium LT2 STM4007 -272 4.2 CTTTGTGATCGCTTTCACGGAG
-114 3.8 CAATGTGAAAGTTGGCACAGAT
Citrobacter koseri ATCC BAA-895 CKO_03140 -250 4.2 CTTTGTGATCGCTTTCACGGAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04178 -299 3.9 CTTTGTGACCGCTTTCACGGAG
Serratia proteamaculans 568 Spro_4881 -267 4 GTATGTGATCCCTTTCACGGTG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0029 -265 4.2 CTTTGTGATCCCTTTCACGGTG
Edwardsiella tarda EIB202 ETAE_3493 -267 4.2 GTTTGTGATCCTATTCACGATG
Proteus mirabilis HI4320 PMI2882 -270 4.7 AATTGTGATCCTTTTCACGCCT
-215 3.8 AATTGTGCAACTATTCAGACTT
-181 3.9 ATTTGTGCAATAATTAAAAAAT
Position: -115
Score: 5.3
Sequence: TAATGTGATGGATATCGCAATT
Position: -65
Score: 4.6
Sequence: ATTTGTGATAGCGCTATCATTT
Locus tag: YberA_01002895
YberA_01002895 -115 5.3 TAATGTGATGGATATCGCAATT
-65 4.6 ATTTGTGATAGCGCTATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: CKO_00488
Ortholog function: LacI-family transcriptional regulator
Salmonella typhimurium LT2 STM2345 -192 4 AGCTGCGATCGTTATCACAAAG
-143 4.6 AATTGTGATAGCGCTATCAAAT
Citrobacter koseri ATCC BAA-895 CKO_00488 -192 4.6 ATCTGTGATCATATTCACAAAG
-143 4.5 ATATGTGATAGCGCTATCAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01748 -155 4.2 AACTGTGATACACCTCCCAAAG
-53 3.6 AGTTATAATGCGATTCGCAGAT
Enterobacter sp. 638 Ent638_2847 -178 4.1 AGCTGCGATCAAGATCACAAAG
-129 4.6 AATTGTGATAGCGCTATCAAAT
Yersinia pestis KIM y1619 -208 5.4 TAATGTGATCTGGATCTCAATT
-158 4.6 ATTTGTGATAGCGCTATCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3772 -246 4.5 TAATGTGATTAACATCCAAAAA
-196 4 AACTGTGACCGGCTTAGCACAA
Edwardsiella tarda EIB202 ETAE_3025 -210 4.3 TTTCGTGATAGCGCTATCATTT
Proteus mirabilis HI4320 PMI1778 -139 4.2 AATTGTGATAGCGCTATTATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu1978 -195 3.8 GCTAGTGATATTAGTCACAAAT
-145 4.7 AATTGTGATAGCGCTATCATTT
Position: -226
Score: 4.7
Sequence: TTTGGTGACATTTATCACAAAA
Locus tag: YberA_01002951
YberA_01002951 -226 4.7 TTTGGTGACATTTATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagE
Ortholog function: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
Enterobacter sp. 638 Ent638_1194 -162 4.4 TTTGGTGACAAAACTCACAAAA
-128 3.6 ATTTGCGATACGAATTAATTTT
Yersinia pestis KIM y1203 -206 4.9 TTTGGTGATATTTATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1327 -202 5 TTTGGTGATTTTTATCACATAA
Edwardsiella tarda EIB202 ETAE_2616 -157 4.8 ATTGGTGATAGTTATCACAAAT
Proteus mirabilis HI4320 PMI0455 -150 4.6 ATAGGTGACTTTAATCACAAAT
Position: -192
Score: 4.9
Sequence: TTTTGTGATAAATGTCACCAAA
Locus tag: YberA_01002952
YberA_01002952 -192 4.9 TTTTGTGATAAATGTCACCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagB
Ortholog function: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Escherichia coli str. K-12 substr. MG1655 b0678 -212 4.3 AAATTTAATTCGTATCGCAAAT
-178 4.6 TTTTGTGAGTTTTGTCACCAAA
Salmonella typhimurium LT2 STM0684 -205 3.7 AAAATTAATTCGCCTCGCAAAT
-171 4.7 TTTTGTGATTATAATCACTAAA
Citrobacter koseri ATCC BAA-895 CKO_02486 -218 3.8 AAAATTAATTCGTATCGCAAAT
-184 5.2 TTTTGTGATTTGAATCACCAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00699 -217 3.8 AAAATTAATTCGTATCGCAAAT
-183 5 TTTTGTGATAATTATCACCAAA
Enterobacter sp. 638 Ent638_1193 -218 3.8 AAAATTAATTCGTATCGCAAAT
-184 4.6 TTTTGTGAGTTTTGTCACCAAA
Erwinia amylovora ATCC 49946 EAM_1147 -195 4.9 ATATGTGATTAAAGTCACCTTA
Yersinia pestis KIM y1202 -214 5.1 TTTTGTGATAAATATCACCAAA
Serratia proteamaculans 568 Spro_1227 -194 5.3 TTTTGTGATTTACATCACCAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1326 -180 5 TTATGTGATAAAAATCACCAAA
Edwardsiella tarda EIB202 ETAE_2617 -190 5 ATTTGTGATAACTATCACCAAT
Proteus mirabilis HI4320 PMI0454 -217 4.9 ATTTGTGATTAAAGTCACCTAT
Position: -309
Score: 3.9
Sequence: AAATGAGCTGATTAGCACATTT
Position: -190
Score: 4
Sequence: ATGCGTGATCTGTCGCCCAAAA
Locus tag: YberA_01002979
YberA_01002979 -309 3.9 AAATGAGCTGATTAGCACATTT
-190 4 ATGCGTGATCTGTCGCCCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: acs
Ortholog function: acetyl-coenzyme A synthetase
Escherichia coli str. K-12 substr. MG1655 b4069 -100 4.1 TTGCGTGATCTGTCGCCCAAAT
Salmonella typhimurium LT2 STM4275 -100 4.1 TTGCGTGATCTGTCGCCCAAAT
Citrobacter koseri ATCC BAA-895 CKO_03816 -101 4.3 TTGCGTGATCTGCCGCGCAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04478 -101 3.9 TTGCGTGATCTGCCCCCCAATT
Enterobacter sp. 638 Ent638_0276 -101 4.1 TTGCGTGATCTGTCGCCCAAAT
Yersinia pestis KIM y0510 -97 4.2 ATACGTGATCTGCCGCCCAAAA
Serratia proteamaculans 568 Spro_0297 -97 4 TTGCGTGATCTGCCGCCCAAAA
Proteus mirabilis HI4320 PMI3037 -97 4.5 TTTCGTGATCTTATGCGCAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0074 -98 4.2 TTGCGTGATCTTCCGCGCAAAA
Position: -269
Score: 3.9
Sequence: TAAATTGTTCTAGATCAAACTA
Locus tag: YberA_01003029
YberA_01003029 -269 3.9 TAAATTGTTCTAGATCAAACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydA
Ortholog function: cytochrome d terminal oxidase, polypeptide subunit I
Proteus mirabilis HI4320 PMI0573 -247 3.8 AAATATGCTGTTACTAACCTAA
Position: -245
Score: 3.6
Sequence: AATAGAGACAGATCTCAGATTT
Position: -67
Score: 3.4
Sequence: TATTATGATAACACTACAATTT
Locus tag: YberA_01003052
YberA_01003052 -245 3.6 AATAGAGACAGATCTCAGATTT
-67 3.4 TATTATGATAACACTACAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuB
Ortholog function: C4-dicarboxylate transporter DcuB
Escherichia coli str. K-12 substr. MG1655 b4123 -53 3.5 GACTGTGATCTATTCAGCAAAA
Salmonella typhimurium LT2 STM4301 -53 3.5 GGCTGTGATCCATTTATCAAAA
Citrobacter koseri ATCC BAA-895 CKO_03748 -52 3.9 GACTGTGATCTATTTATCAAAA
Enterobacter sp. 638 Ent638_2479 -81 3.3 AAATCTGATCTGGCTCCCAGCC
Serratia proteamaculans 568 Spro_3863 -77 3.6 GTTTGTGATCGCTATCCCTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1533 -296 3.5 TATTGCGAGCGAGATCTTTTAT
-247 3.5 TTAATAGATTTAGATCAAGAAA
Edwardsiella tarda EIB202 ETAE_2844 -194 3.6 ATACTTTATTCAGATCAATTTT
Proteus mirabilis HI4320 PMI0389 -138 3.3 AACTATAACAACGATCAAAAAA
Position: -84
Score: 4.4
Sequence: AAAAGTGATCTTGATCATCCAT
Locus tag: YberA_01003057
YberA_01003057 -84 4.4 AAAAGTGATCTTGATCATCCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: raiA
Ortholog function: stationary phase translation inhibitor and ribosome stability factor
Escherichia coli str. K-12 substr. MG1655 b2597 -81 4.8 TTATGAGATTTTCATCACACAT
Citrobacter koseri ATCC BAA-895 CKO_03918 -40 5.2 TAATGTGATTTAAATCACGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02919 -88 5.6 AAATGTGATTTATATCACACAT
Enterobacter sp. 638 Ent638_3076 -81 5.4 ATGTGTGATTTAGATCACACAT
Erwinia amylovora ATCC 49946 EAM_2617 -83 5.2 AAATGTGATTTCAATCACGATT
Serratia proteamaculans 568 Spro_0882 -83 4.8 ATACGTGATTTTCATCACGCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3349 -86 4 AAAAGCGATCAATCTCACGCTT
Edwardsiella tarda EIB202 ETAE_2834 -82 3.8 ATCCGTGATTTTCCTCTCACAC
Proteus mirabilis HI4320 PMI0391 -82 4.6 AAAAGTGATCTTGATCATGTTT
Photorhabdus luminescens subsp. laumondii TTO1 plu1266 -87 5.1 AATAGTGATTTAGATCACCTTT
Position: -228
Score: 5.2
Sequence: TTTGGTGATATATATCACATTT
Locus tag: YberA_01003067
YberA_01003067 -228 5.2 TTTGGTGATATATATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: serA
Ortholog function: D-3-phosphoglycerate dehydrogenase
Escherichia coli str. K-12 substr. MG1655 b2913 -210 4.1 TTTGGTGACATGTGTCACGCTT
Salmonella typhimurium LT2 STM3062 -217 4.5 TTTGGTGACATGTATCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03348 -214 4.6 TTTGGTGACTTCTGTCACATTT
Enterobacter sp. 638 Ent638_3332 -215 4.1 TTCGGTGACTTGTATCACGTTT
Yersinia pestis KIM y3301 -126 4.8 TTTGGTGATATATATCACATTC
Serratia proteamaculans 568 Spro_3923 -215 4.4 TTTGGTGACATATGTCACATTG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3905 -214 3.9 TTTGGTACTTAATATCACATTT
Proteus mirabilis HI4320 PMI2031 -210 4 TTCAGTGATATATATCACACGA
Photorhabdus luminescens subsp. laumondii TTO1 plu3605 -207 4.4 TTTAGTGATATATTTCATATCT
-178 4.2 TTATTTGATCTAAATCCTAATT
-105 4.4 TTATGTGATGGGAATAGCAATC
Position: -115
Score: 4.3
Sequence: AACTGTGATCCAGCTAGAATTA
Locus tag: YberA_01003068
YberA_01003068 -115 4.3 AACTGTGATCCAGCTAGAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpiA
Ortholog function: Ribose 5-phosphate isomerase A (EC 5.3.1.6)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03349 -82 3.9 TTGTGTGATCTGCATCGCAGGG
Enterobacter sp. 638 Ent638_3333 -47 3.8 TAATGTGACACCGGTCACAGGG
Yersinia pestis KIM y3302 -114 4.2 AACTGTGATCTCGCTAGAATTA
Edwardsiella tarda EIB202 ETAE_2950 -276 4 TTTTGTTATGTATAAAACGTTA
Proteus mirabilis HI4320 PMI2032 -96 3.8 TAAAATGTTGTGTCTCAAATTT
Position: -129
Score: 3.8
Sequence: TAATTCTAGCTGGATCACAGTT
Locus tag: YberA_01003069
YberA_01003069 -129 3.8 TAATTCTAGCTGGATCACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: iciA
Ortholog function: chromosome replication initiation inhibitor protein
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03350 -107 3.8 CCCTGCGATGCAGATCACACAA
Enterobacter sp. 638 Ent638_3334 -126 3.9 CCCTGTGACCGGTGTCACATTA
-48 3.7 ATTTGTGTCATAGTGCAGAATA
Yersinia pestis KIM y3303 -249 3.7 TAATTCTAGCGAGATCACAGTT
Edwardsiella tarda EIB202 ETAE_2951 -48 3.8 TAACGTTTTATACATAACAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3610 -41 3.6 CATAGTGATATTCAGAAAAATA
Position: -188
Score: 3.3
Sequence: TAAATTGCTATAATTCCCGTTA
Locus tag: YberA_01003081
YberA_01003081 -188 3.3 TAAATTGCTATAATTCCCGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: metK
Ortholog function: S-adenosylmethionine synthetase (EC 2.5.1.6)
Escherichia coli str. K-12 substr. MG1655 b2942 -200 3.6 GAATGAGACACGATTCAAAAAA
Salmonella typhimurium LT2 STM3090 -200 3.9 CATTGCGACGGCCTTCAAAAAA
Citrobacter koseri ATCC BAA-895 CKO_04317 -199 3.5 CAACGAGAGTTGATTCAAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03375 -199 4.3 AAATGCGACCGCCATCAAAAAA
Enterobacter sp. 638 Ent638_3346 -199 4.4 TAATGCGAGCGATATCAAAAAA
Proteus mirabilis HI4320 PMI2095 -275 3.5 CACTGTGATTCAGTTTTCACAG
Photorhabdus luminescens subsp. laumondii TTO1 plu3683 -205 3.3 GTTTATACTCGCAATCACATAA
Position: -110
Score: 4.5
Sequence: AATTGTGAATTAAGTCACAGTC
Locus tag: YberA_01003116
YberA_01003116 -110 4.5 AATTGTGAATTAAGTCACAGTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: dadA
Ortholog function: D-amino acid dehydrogenase small subunit
Escherichia coli str. K-12 substr. MG1655 b1189 -116 4.7 AGATGTGAGCCAGCTCACCATA
Salmonella typhimurium LT2 STM1803 -107 4.6 ATATGTGAAGCACGTCACCATA
Citrobacter koseri ATCC BAA-895 CKO_01193 -107 4.5 AGATGTGAGGTGCGTCACCATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02309 -106 4.1 TGCTGTGAGTTAAGTCACCATA
Enterobacter sp. 638 Ent638_2363 -107 4.3 AGGTGTGAGGTAAGTCACCATA
Serratia proteamaculans 568 Spro_2746 -113 4.6 AATTGTGAATGTTGTCACGTTT
Proteus mirabilis HI4320 PMI1509 -121 4.7 AAATGTGATTTGACTCTAAAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu2561 -114 5.4 AATTGTGATCTAAATCATAAAT
Position: -70
Score: 4.1
Sequence: AATCGTAATTTTGGTCACTTAA
Locus tag: YberA_01003130
YberA_01003130 -70 4.1 AATCGTAATTTTGGTCACTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sbmC
Ortholog function: DNA gyrase inhibitor
Escherichia coli str. K-12 substr. MG1655 b2009 -93 3.5 GAGTGCGAGTCTGCTCGCATAA
Salmonella typhimurium LT2 STM2061 -102 4.1 GATTGCGAGGTTGCTCACAAAA
Citrobacter koseri ATCC BAA-895 CKO_00775 -219 3.5 GAGTGCGAGTCTGCTCACATAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02467 -88 3.6 CTCTGTGAATTCGCGCACATAC
Enterobacter sp. 638 Ent638_2577 -97 3.6 TCGTGCGAGTCTGCTCGCATAA
-65 3.6 ATATTTGCTGCACATAAAGAAT
Position: -265
Score: 3.9
Sequence: TGGTGTGACGTTGCTCATTATT
Locus tag: YberA_01003152
YberA_01003152 -265 3.9 TGGTGTGACGTTGCTCATTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytfQ
Ortholog function: Putative sugar ABC transport system, periplasmic binding protein YtfQ precursor
Escherichia coli str. K-12 substr. MG1655 b4227 -98 3.7 AAGTGTGATGTAACGCAATCTG
Citrobacter koseri ATCC BAA-895 CKO_03603 -130 3.7 AGTTGTGATTAACCTTTTATTT
Yersinia pestis KIM y0328 -229 3.8 TGGTGTGACGCCGCTCATTATT
Serratia proteamaculans 568 Spro_4768 -163 4.3 TGATGTGATGCCGCTCATTATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4236 -68 3.7 TATTGTTAGCCTACTTACCATA
Position: -228
Score: 4.1
Sequence: TTTTGTGAGTCCACACACGAAA
Locus tag: YberA_01003158
YberA_01003158 -228 4.1 TTTTGTGAGTCCACACACGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yifB
Ortholog function: magnesium chelatase family protein
Escherichia coli str. K-12 substr. MG1655 b3765 -266 4.2 TTTTATGATGCGTTTAATAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04266 -226 4.1 TTATATGAAAAAAATCAAAAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4230 -144 3.9 AATTGCGACCCATTACGCACAA
Edwardsiella tarda EIB202 ETAE_0086 -128 3.7 TATTGTTAATGTGTTAATAATT
Photorhabdus luminescens subsp. laumondii TTO1 plu4686 -268 3.7 TAATTTAATTTAAATTTCAAAA
Position: -137
Score: 4.8
Sequence: TTAATTGATGTGGATCACACTA
Locus tag: YberA_01003219
YberA_01003219 -137 4.8 TTAATTGATGTGGATCACACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fsaB
Ortholog function: fructose 6-phosphate aldolase 2
Yersinia pestis KIM y2074 -103 4.3 TATTTTGATAAGAATAACGTTA
Serratia proteamaculans 568 Spro_2640 -88 4.7 TGATTTGATTTCGATCAAATAT
Position: -227
Score: 5
Sequence: AAATGTGATAAAAATCTCAAAT
Locus tag: YberA_01003304
YberA_01003304 -227 5 AAATGTGATAAAAATCTCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gapA
Ortholog function: glyceraldehyde-3-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655 b1779 -226 5.3 AATCGTGATGAAAATCACATTT
Salmonella typhimurium LT2 STM1290 -226 4.8 AATCGTGACTGATGTCACATTA
Citrobacter koseri ATCC BAA-895 CKO_01800 -226 5 AATCGTGATCGGAATCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01197 -225 5.2 AATTGTGACTTAAATCACGTTT
Enterobacter sp. 638 Ent638_1675 -225 5.7 AATTGTGATCTTTCTCACATAT
Erwinia amylovora ATCC 49946 EAM_1931 -215 5.4 AATTGTGATGCAGATCACCATT
Yersinia pestis KIM y2165 -218 5.1 AAATGTGATAAAAATCGCAAAT
Serratia proteamaculans 568 Spro_2728 -227 5.6 ATATGTGATACCGATCACATAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2344 -235 5.8 AATTGTGATGTGTATCACATAA
Edwardsiella tarda EIB202 ETAE_1483 -227 5.1 TTTTGTGATGAGCATCACAAAC
Proteus mirabilis HI4320 PMI1504 -226 5.6 AAATGTGATACATTTCACATAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2558 -224 5.4 TATTGTGATGTGACTCGCATAT
Position: -142
Score: 5
Sequence: ATTTGAGATTTTTATCACATTT
Locus tag: YberA_01003305
YberA_01003305 -142 5 ATTTGAGATTTTTATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: msrB
Ortholog function: methionine sulfoxide reductase B
Escherichia coli str. K-12 substr. MG1655 b1778 -137 5.2 AAATGTGATTTTCATCACGATT
Salmonella typhimurium LT2 STM1291 -107 4.7 TAATGTGACATCAGTCACGATT
Citrobacter koseri ATCC BAA-895 CKO_01799 -107 4.9 AAACGTGATTCCGATCACGATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01198 -135 5.1 AAACGTGATTTAAGTCACAATT
Enterobacter sp. 638 Ent638_1676 -137 5.2 ATATGTGAGAAAGATCACAATT
Erwinia amylovora ATCC 49946 EAM_1930 -137 5.2 AATGGTGATCTGCATCACAATT
Yersinia pestis KIM y2164 -85 5.1 ATTTGCGATTTTTATCACATTT
Serratia proteamaculans 568 Spro_2727 -143 5.7 ATATGTGATCGGTATCACATAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2343 -135 5.6 TTATGTGATACACATCACAATT
Edwardsiella tarda EIB202 ETAE_1484 -91 4.9 GTTTGTGATGCTCATCACAAAA
Proteus mirabilis HI4320 PMI1503 -137 5.3 TTATGTGAAATGTATCACATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu2557 -267 4.6 ATATGCGAGTCACATCACAATA
Position: -202
Score: 4.7
Sequence: AATTGTGATCCGGTGCAACTTA
Locus tag: YberA_01003341
YberA_01003341 -202 4.7 AATTGTGATCCGGTGCAACTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: malT
Ortholog function: transcriptional regulator MalT
Escherichia coli str. K-12 substr. MG1655 b3418 -142 4.3 AATTGTGACACAGTGCAAATTC
Salmonella typhimurium LT2 STM3515 -143 4.3 AATTGTGACAGAGTGCAAATTC
Citrobacter koseri ATCC BAA-895 CKO_04840 -142 4.3 AATTGTGACAGAGTGCAAATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03788 -142 4.4 ATTTGTGACATAGAGCAAATTC
Enterobacter sp. 638 Ent638_3831 -142 4.6 AATTGTGACAGAGTGCAAATTA
Yersinia pestis KIM y3900 -202 4.6 AATTGTGATCCGTAGCAACTTA
Serratia proteamaculans 568 Spro_4637 -203 4 AAGTGTGATCAATAGCAATATA
Edwardsiella tarda EIB202 ETAE_3303 -212 3.8 AAATGTGATCAGCCGCAATTTC
Position: -100
Score: 4.5
Sequence: CGTTGTGCTATGGCTCACATAA
Locus tag: YberA_01003356
YberA_01003356 -100 4.5 CGTTGTGCTATGGCTCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pldB
Ortholog function: Lysophospholipase L2 (EC 3.1.1.5)
Citrobacter koseri ATCC BAA-895 CKO_00166 -60 3.8 TATTGTGTCAGGCATCATAAAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04321 -56 3.8 TTGTGTGATACACGGTAAAAAA
Enterobacter sp. 638 Ent638_3971 -56 4.3 TTTTGTGATGCGTCACGAAAAA
Yersinia pestis KIM y0400 -144 4.8 AGTTGTGCTATGGCTCACAAAA
Serratia proteamaculans 568 Spro_0196 -88 3.8 TTGTAAGAATTGAATCACAATA
-53 4.2 TCTTGTGCCAGAGGTCACATTT
Edwardsiella tarda EIB202 ETAE_3343 -217 3.9 CGGTGTGATAATCCTCAAACTT
Position: -57
Score: 3.7
Sequence: ATATTTGATCACGATCACTTCC
Locus tag: YberA_01003427
YberA_01003427 -57 3.7 ATATTTGATCACGATCACTTCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepT
Ortholog function: peptidase T
Escherichia coli str. K-12 substr. MG1655 b1127 -73 3.6 AAAAGTGACCTGACGCAATATT
Salmonella typhimurium LT2 STM1227 -73 3.6 AAAAGTGACCTGACGCAATATT
Citrobacter koseri ATCC BAA-895 CKO_01926 -73 3.6 AAAAGTGACCTGACGCAATATT
Enterobacter sp. 638 Ent638_1640 -31 3.6 AAAAGTGACCTGACGCAATATT
Yersinia pestis KIM y1791 -27 3.7 ATATTTGATCATGATCACTTCC
Serratia proteamaculans 568 Spro_2009 -188 4.1 CGTCGTGAAGAAGATCACACAT
Position: -125
Score: 4.8
Sequence: TTATGTGCAGTAAATCACATAA
Locus tag: YberA_01003487
YberA_01003487 -125 4.8 TTATGTGCAGTAAATCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mlc
Ortholog function: ROK family transcriptional regulatory protein
Escherichia coli str. K-12 substr. MG1655 b1594 -108 4.1 AAATGTGCTGTTAATCACATGC
Salmonella typhimurium LT2 STM1488 -65 3.8 AGTATTGAAGTGTTTCACCATA
Citrobacter koseri ATCC BAA-895 CKO_01593 -107 3.6 AAaTGTGcagTAaATCACAcgg
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01574 -104 3.8 AAATGTGCGGTAAATCACAAGG
Enterobacter sp. 638 Ent638_1919 -107 3.8 AAATGTGCGGTAAATCACAAGG
Erwinia amylovora ATCC 49946 EAM_1710 -143 4.9 TTATGTGCTGTAAATCACATTC
Yersinia pestis KIM y2110 -146 4.8 TTATGTGCAGCAAATCACATAA
Serratia proteamaculans 568 Spro_2283 -111 4.8 ATTTGTGCAGCAAATCACATAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2258 -226 4.4 ATATGCGCGCTAAATCACATAA
Edwardsiella tarda EIB202 ETAE_1713 -113 4.8 ATTTGTGCACTTAATCACATAA
Proteus mirabilis HI4320 PMI1292 -126 4.7 ATATGTGCTTTCCATCACGATT
Photorhabdus luminescens subsp. laumondii TTO1 plu2226 -119 4.8 TTTCGTGCTGAATATCACATAT
Position: -118
Score: 4.8
Sequence: TTATGTGATCGTCATCGCAAAG
Locus tag: YberA_01003522
YberA_01003522 -118 4.8 TTATGTGATCGTCATCGCAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: glk
Ortholog function: glucokinase
Escherichia coli str. K-12 substr. MG1655 b2388 -116 4.1 TTGTGTGACCCAGATCGATATT
Salmonella typhimurium LT2 STM2403 -116 3.9 TTCTGTGATGAAGATCTATATT
Citrobacter koseri ATCC BAA-895 CKO_00412 -116 4.5 TTATGTGATGCAGATCGATATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02738 -117 4.4 AAATGTGACCTGTGTCGCTAAA
Enterobacter sp. 638 Ent638_2921 -116 3.8 TTCTGTGACGAAGATCGATTAT
Yersinia pestis KIM y1505 -113 4.7 TTATGAGATGTCAGTCACAAAA
Serratia proteamaculans 568 Spro_3407 -116 4.8 TTTTGTGATCCGGATCGCTAAT
Position: -136
Score: 4.1
Sequence: TTTTGTGACCAACCCCACTAAT
Locus tag: YberA_01003528
YberA_01003528 -136 4.1 TTTTGTGACCAACCCCACTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nupC
Ortholog function: Nucleoside permease NupC
Salmonella typhimurium LT2 STM2409 -133 3.7 AAGTGTATTACAGATCACTAAT
-84 3.8 TAGTGTGTGTTGGATCTCGTTT
Citrobacter koseri ATCC BAA-895 CKO_00402 -133 3.7 AAACGTATTCCAGATCACTAAT
-114 4 AATTTTGAATCTCATCACAGCT
-84 3.7 TAGTGTGTGTTTGATCTCGTTT
Enterobacter sp. 638 Ent638_2927 -189 4.7 TTTTGTGAAGCGTAGCACACAA
-133 3.6 AAATGTATGGTTGATCACTATT
-84 4.1 TAGTGTGGTCTTGATCTCGTTT
Position: -55
Score: 4.3
Sequence: TTTTGTGAGGCGGATCATTAAA
Locus tag: YberA_01003569
YberA_01003569 -55 4.3 TTTTGTGAGGCGGATCATTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uraA1
Ortholog function: Xanthine permease
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04013 -143 3.7 TGATGCGATTTAGCATACAAAA
Enterobacter sp. 638 Ent638_0073 -169 3.7 CAAAATGATTCTTCGCACATAT
Yersinia pestis KIM y0107 -60 4 AAATGTGAGTTAGCAAAAAAAT
Edwardsiella tarda EIB202 ETAE_0025 -56 3.7 TTTTGTGGCGCAGATCATTAAA
Proteus mirabilis HI4320 PMI2868 -54 3.7 TTTTGTGGCGCAGATCATTAAA
Position: -162
Score: 4.1
Sequence: TTTTATGATCCAGATCAATTTC
Locus tag: YberA_01003632
YberA_01003632 -162 4.1 TTTTATGATCCAGATCAATTTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W
Escherichia coli str. K-12 substr. MG1655 b1256 -166 4.9 AAAATTGATTTAAATCACATTA
-82 3.8 TAATGTGATCTATGTAGGATCA
Salmonella typhimurium LT2 STM1732 -82 4.2 AAATGTGATCTGTATTAGATCA
Citrobacter koseri ATCC BAA-895 CKO_01333 -82 3.9 TAATGTGATCTGTATTGGATCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01248 -101 3.9 CATTGCGATCGGTAGCAAAAAT
-45 4 TAGTGTGATCTAAAACAGATCA
Enterobacter sp. 638 Ent638_2283 -121 3.7 AAAATTAATCTGGATCAACAAA
Yersinia pestis KIM y2044 -69 3.9 AGATGTGATCTCGATTAGATCA
Serratia proteamaculans 568 Spro_2674 -135 3.8 TTTTTTGATTCAGATCAATCCT
Edwardsiella tarda EIB202 ETAE_1528 -161 3.9 CTGATTGATGTCTATCAAATTT
Proteus mirabilis HI4320 PMI1350 -168 4.6 AAATTTGATGTGGATCAATTAT
-85 3.8 AGTTGTGATCGGCATTAGATCA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -164 4.3 AACTTTGATTTGGATCAAGTTA
-39 3.8 TATTTTGATTGACTTTAAATCA