Propagation of Crp regulog to Photorhabdus luminescens subsp. laumondii TTO1

Reference regulog properties
Source regulog:	Crp - Enterobacteriales
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	activator (repressor)
Biological process:	Carbon catabolism
Effector:	Cyclic 3',5'-AMP
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Photorhabdus luminescens subsp. laumondii TTO1
Orthologous TF(s)	plu0395
Regulated genes	184

Built upon 2301 sites [see more]

Predicted regulatory interactions in *Photorhabdus luminescens subsp. laumondii TTO1*
	Locus tag	Position	Score	Sequence
Position: -265 Score: 5.7 Sequence: TTATGTGATTTAAATCACATTT Locus tag: plu0047
	plu0047	-265	5.7	TTATGTGATTTAAATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpI
Ortholog function: ATP synthase subunit I
Escherichia coli str. K-12 substr. MG1655	b3739	-263	4.8	ATATGTGATCTGAAGCACGCTT
Salmonella typhimurium LT2	STM3872	-262	4.6	ATGTGTGATCTGGTGCACGCTT
		-211	4.1	TTTTGTACGATCGTTCACACTT
Citrobacter koseri ATCC BAA-895	CKO_00079	-262	4.7	ATATGTGATCCGAAGCACGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04144	-262	4.7	TTATGTGATCTGATGCACGCTT
Enterobacter sp. 638	Ent638_4125	-261	4.8	TTTTGTGATCTCGTGCACGCTT
Erwinia amylovora ATCC 49946	EAM_3481	-264	4.4	ATTTGTGATCGTGGACACGCTT
Yersinia pestis KIM	y4142	-263	5.4	TTATGTGATGTATTTCACGTTT
Serratia proteamaculans 568	Spro_0001	-265	4.4	TATTGTGAGCAACTACACGTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4519	-254	5	TTATGTGAGTCACATCACAGAT
Edwardsiella tarda EIB202	ETAE_3526	-297	3.7	AATCGTGAAAATATTTAAATTA
Proteus mirabilis HI4320	PMI3057	-259	5	TTGTGTGTTCTAGATCACATTA
Photorhabdus luminescens subsp. laumondii TTO1	plu0047	-265	5.7	TTATGTGATTTAAATCACATTT

Position: -98 Score: 4.2 Sequence: TTGCGTGATCTTCCGCGCAAAA Locus tag: plu0074
	plu0074	-98	4.2	TTGCGTGATCTTCCGCGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: acs
Ortholog function: acetyl-coenzyme A synthetase
Escherichia coli str. K-12 substr. MG1655	b4069	-100	4.1	TTGCGTGATCTGTCGCCCAAAT
Salmonella typhimurium LT2	STM4275	-100	4.1	TTGCGTGATCTGTCGCCCAAAT
Citrobacter koseri ATCC BAA-895	CKO_03816	-101	4.3	TTGCGTGATCTGCCGCGCAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04478	-101	3.9	TTGCGTGATCTGCCCCCCAATT
Enterobacter sp. 638	Ent638_0276	-101	4.1	TTGCGTGATCTGTCGCCCAAAT
Yersinia pestis KIM	y0510	-97	4.2	ATACGTGATCTGCCGCCCAAAA
Serratia proteamaculans 568	Spro_0297	-97	4	TTGCGTGATCTGCCGCCCAAAA
Proteus mirabilis HI4320	PMI3037	-97	4.5	TTTCGTGATCTTATGCGCAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu0074	-98	4.2	TTGCGTGATCTTCCGCGCAAAA

Position: -297 Score: 3.7 Sequence: TTTTGCGCGGAAGATCACGCAA Locus tag: plu0075
	plu0075	-297	3.7	TTTTGCGCGGAAGATCACGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sodA
Ortholog function: Manganese superoxide dismutase (EC 1.15.1.1)
Escherichia coli str. K-12 substr. MG1655	b3908	-161	3.8	GTGGGTGATTTGCTTCACATCT
Citrobacter koseri ATCC BAA-895	CKO_03093	-150	4.4	ACGGGTGATTTGGCTCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04217	-150	4	TTAGTTGTTCTACATCACAAAA
Enterobacter sp. 638	Ent638_4063	-160	3.6	CCGCGTGAGCAGACTCACAATT
Proteus mirabilis HI4320	PMI3036	-292	3.7	TTTTGCGCATAAGATCACGAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu0075	-297	3.7	TTTTGCGCGGAAGATCACGCAA

Position: -86 Score: 3.8 Sequence: TTTTTTGATAACTATCGCTGTT Locus tag: plu0100
	plu0100	-86	3.8	TTTTTTGATAACTATCGCTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pck
Ortholog function: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Escherichia coli str. K-12 substr. MG1655	b3403	-240	4.2	GAATGCGATTCCACTCACAATA
		-137	4	TTTCGTGACAGGAATCACGGAG
Salmonella typhimurium LT2	STM3500	-241	4	GAATGCGATTACAGTCACATTA
		-107	3.9	AATCGTGATTTTGTCCAGATAC
Citrobacter koseri ATCC BAA-895	CKO_04825	-107	3.9	AATCGTGATTTTGTCCAGATAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03773	-242	3.7	GAAAGCGATTACATTCACATTT
		-138	3.7	CTTCGTGACAGGAGTCACCGTT
Enterobacter sp. 638	Ent638_3816	-241	4.1	GTATGCGATTACATTCACATTA
Yersinia pestis KIM	y3918	-130	4.2	ATTCGTGTTCCATCTCTCATAA
		-80	3.8	ATATTTGATAGCTATCGCTGTT
Serratia proteamaculans 568	Spro_4617	-80	4.1	ATATTTGATACCTATCGCGGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4106	-81	4	TTTTATGATTGCTATCGCGGTT
Edwardsiella tarda EIB202	ETAE_3277	-82	3.9	TTTTTTGATGACTATCTCGGTT
Proteus mirabilis HI4320	PMI3015	-131	4	ATTTGTGCATTAGTTCTCGTTA
Photorhabdus luminescens subsp. laumondii TTO1	plu0100	-86	3.8	TTTTTTGATAACTATCGCTGTT

Position: -92 Score: 3.5 Sequence: AAACACAACTTACCTCACATTT Locus tag: plu0122
	plu0122	-92	3.5	AAACACAACTTACCTCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gdhA
Ortholog function: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Escherichia coli str. K-12 substr. MG1655	b1761	-106	3.5	TTTCTTGCTTACCGTCACATTC
Salmonella typhimurium LT2	STM1299	-107	3.6	TTTCTTGCTTACCGTCACATTG
		-55	3.6	TATTCTGATAAAACGCAAATAC
Citrobacter koseri ATCC BAA-895	CKO_01789	-107	3.4	TTTCTTGCTTACCGTCACACTG
Enterobacter sp. 638	Ent638_1685	-110	3.3	AATTTTCACTTGCCTCGCAAAG
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0051	-234	3.6	TTTTGTTATATAACAAAAACTT
Proteus mirabilis HI4320	PMI3008	-195	3.4	AATCCTGATTTTATTAGCCTTT
		-88	3.5	AAACAATATCAACCTCACATAA
Photorhabdus luminescens subsp. laumondii TTO1	plu0122	-92	3.5	AAACACAACTTACCTCACATTT

Position: -126 Score: 3.6 Sequence: ATTTGCTATCCATATCACGTGA Locus tag: plu0194
	plu0194	-126	3.6	ATTTGCTATCCATATCACGTGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpD
Ortholog function: glycerol-3-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655	b3426	-116	4.4	TAATGTTATACATATCACTCTA
Salmonella typhimurium LT2	STM3526	-116	4.4	TAATGTTATACATATCACTCTA
Citrobacter koseri ATCC BAA-895	CKO_04845	-116	4.5	TAATGTTATATGTATCACTCTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03792	-119	3.7	ATATGTTACACCCATCACTTCA
		-58	3.7	TATAGTGAGCGATATCGAGCAT
Enterobacter sp. 638	Ent638_3835	-116	4.4	TTATGTTATCTCTATCACTCAA
		-55	4	TATTATGAGCGATATCGAACAT
Erwinia amylovora ATCC 49946	EAM_3265	-124	4	AGACGTTATCGGCATCACGCAT
Yersinia pestis KIM	y3891	-129	4.4	AAATGTTACCTCCATCACGCAT
Serratia proteamaculans 568	Spro_4642	-129	3.6	AACTGTTACCTCTATCACGCCT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4141	-144	4.3	TAATGTGACAACTATCATCATA
		-124	4.4	TATTGTTAGCTTCATCACGCAT
Edwardsiella tarda EIB202	ETAE_3312	-124	4.3	TTGTGTTATCCGCATCGCGTAA
Proteus mirabilis HI4320	PMI2930	-129	4.4	AATTGTTATTTATATCACGCAG

Position: -116 Score: 3.6 Sequence: AAATGTATTACTAATAACGTAT Position: -102 Score: 3.6 Sequence: TAACGTATTACTGATAACAAAT Locus tag: plu0197
	plu0197	-116	3.6	AAATGTATTACTAATAACGTAT
		-102	3.6	TAACGTATTACTGATAACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpE
Ortholog function: thiosulfate sulfurtransferase
Escherichia coli str. K-12 substr. MG1655	b3425	-95	4.7	TAGAGTGATATGTATAACATTA
Salmonella typhimurium LT2	STM3525	-104	4.7	TAGAGTGATATGTATAACATTA
Citrobacter koseri ATCC BAA-895	CKO_04844	-108	4.6	TAGAGTGATACATATAACATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03791	-107	4.3	TGAAGTGATGGGTGTAACATAT
Enterobacter sp. 638	Ent638_3834	-257	3.8	ATGTTCGATATCGCTCATAATA
		-196	4.6	TTGAGTGATAGAGATAACATAA
Erwinia amylovora ATCC 49946	EAM_3264	-134	3.9	ATGCGTGATGCCGATAACGTCT
Photorhabdus luminescens subsp. laumondii TTO1	plu0197	-102	3.6	TAACGTATTACTGATAACAAAT

Position: -223 Score: 3.7 Sequence: AAATGTGCGCATTGTCATGTTT Locus tag: plu0300
	plu0300	-223	3.7	AAATGTGCGCATTGTCATGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dppA
Ortholog function: dipeptide ABC transporter, substrate-binding protein
Citrobacter koseri ATCC BAA-895	CKO_04994	-121	3.8	TTATGTGAACGGAATCCCCATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03899	-62	4	ATATGCAAACAACATCACAATT
Yersinia pestis KIM	y3825	-211	3.9	AGATGTGAGCCATATAACCTCT
Serratia proteamaculans 568	Spro_0138	-271	3.8	TTGTTTGCTGTTTCTCACAGTC
Photorhabdus luminescens subsp. laumondii TTO1	plu0300	-223	3.7	AAATGTGCGCATTGTCATGTTT

Position: -187 Score: 4.9 Sequence: TTTTGCGATAAATATCACAATT Locus tag: plu0457
	plu0457	-187	4.9	TTTTGCGATAAATATCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: malK
Ortholog function: maltose/maltodextrin transporter ATP-binding protein
Escherichia coli str. K-12 substr. MG1655	b4035	-254	4.4	TTGTGTGATCTCTGTTACAGAA
		-225	3.9	TAATGTGGAGATGCGCACATAA
		-191	3.7	TTTTGCAAGCAACATCACGAAA
Salmonella typhimurium LT2	STM4230	-254	4.7	TTATGTGATCTGTGTTGCATAA
		-225	3.6	TAATGCGTGCTGGCGCACACAA
		-223	3.8	ATGCGTGCTGGCGCACACAAAA
Citrobacter koseri ATCC BAA-895	CKO_03880	-254	4.7	TTATGTGATCTGTGTTGCATAA
		-225	3.7	TAATGCGTGTTGGCGCACATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04424	-254	4.5	TTGTGTGATCTCCATTGCAAAA
		-225	3.7	TATTGCGTCCTGGAGCACAGAA
Photorhabdus luminescens subsp. laumondii TTO1	plu0457	-250	4	GGGTGTGATCTCTATTACAAAA
		-221	3.8	AAGCGTGCCGTTGCCCACAAAA
		-187	4.9	TTTTGCGATAAATATCACAATT

Position: -213 Score: 5.3 Sequence: AATTGTGATATTTATCGCAAAA Locus tag: plu0458
	plu0458	-213	5.3	AATTGTGATATTTATCGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: malE
Ortholog function: maltose ABC transporter periplasmic protein
Photorhabdus luminescens subsp. laumondii TTO1	plu0458	-213	5.3	AATTGTGATATTTATCGCAAAA
		-150	4.1	TTTTGTAATAGAGATCACACCC

Position: -179 Score: 3.4 Sequence: AAACGTGATTTAATGCTTTAAA Locus tag: plu0492
	plu0492	-179	3.4	AAACGTGATTTAATGCTTTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hupA
Ortholog function: DNA-binding protein HU-alpha (HU-2)
Escherichia coli str. K-12 substr. MG1655	b4000	-179	3.4	AAACGTGATTTAACGCCTGATT
Citrobacter koseri ATCC BAA-895	CKO_02986	-179	3.4	AAACGTGATTTAACGCCTGATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04382	-179	3.4	AAACGTGATTTACCGCCTGAAT
Enterobacter sp. 638	Ent638_0213	-179	3.5	AAACGTGATTTAACGCCTGTTT
Yersinia pestis KIM	y0499	-181	3.4	AAACGTGATTTAACGCCTGATT
Serratia proteamaculans 568	Spro_0290	-181	3.4	AAACGTGATTTAACGCCTCATT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0238	-197	3.3	AAACGTGATTTAAGGCCTGAAA
Edwardsiella tarda EIB202	ETAE_0183	-182	3.3	AAACGTGATTTAACACCTGATT
Proteus mirabilis HI4320	PMI2771	-183	3.7	AAACGTGATTTAGTGCTTGAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu0492	-179	3.4	AAACGTGATTTAATGCTTTAAA

Position: -136 Score: 5.5 Sequence: ATTTGTGATAAATATCACATTT Locus tag: plu0497
	plu0497	-136	5.5	ATTTGTGATAAATATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntK
Ortholog function: gluconate kinase 1
Photorhabdus luminescens subsp. laumondii TTO1	plu0497	-136	5.5	ATTTGTGATAAATATCACATTT

Position: -156 Score: 5.6 Sequence: AAATGTGATGTGAATCACACAA Locus tag: plu0518
	plu0518	-156	5.6	AAATGTGATGTGAATCACACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yedJ
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b1962	-287	4.6	TGGTGTGATCAGGCGCACATTA
Salmonella typhimurium LT2	STM1993	-70	5.5	AAATGTGATTAATATCACATTA
		-34	4.4	TCATATGACTTACATCACAAAA
Citrobacter koseri ATCC BAA-895	CKO_00980	-168	3.8	TTTTGTGAATGTTTTATCGTAA
Erwinia amylovora ATCC 49946	EAM_2082	-129	3.8	TGATGTAATGAGCAACAAATAA
		-101	4.4	AAGTTTGATGTGGCTAAAATTA
Photorhabdus luminescens subsp. laumondii TTO1	plu0518	-156	5.6	AAATGTGATGTGAATCACACAA

Position: -178 Score: 5.5 Sequence: TTGTGTGATTCACATCACATTT Locus tag: plu0519
	plu0519	-178	5.5	TTGTGTGATTCACATCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nupC2
Ortholog function: Na+ dependent nucleoside transporter
Yersinia pestis KIM	y3744	-154	3.8	CTTTGTCAATAACCTCACATAT
		-115	5.5	TAATGTGATTATGATCACATTT
Serratia proteamaculans 568	Spro_0659	-181	3.9	AACCGTGACGCATGTCACGTAC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0473	-182	4.9	AATTGTGACGAAGATCACTTTT
Edwardsiella tarda EIB202	ETAE_0482	-232	4.9	TGATGTGATATGCATCACTTTT
Proteus mirabilis HI4320	PMI2418	-180	5.2	TAGTGTGATTTAGATCTCATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu0519	-178	5.5	TTGTGTGATTCACATCACATTT

Position: -111 Score: 4 Sequence: CTTTGTGAAATTATTCTAATAA Locus tag: plu0561
	plu0561	-111	4	CTTTGTGAAATTATTCTAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: creA
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b4397	-81	3.7	TATTGAGATTTTGTTCTTAATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04852	-42	3.8	TTTTTTAATAATGGTAACAATA
Serratia proteamaculans 568	Spro_0680	-75	3.8	TTCTGTGACCTAAAACATAAAC
Photorhabdus luminescens subsp. laumondii TTO1	plu0561	-111	4	CTTTGTGAAATTATTCTAATAA

Position: -223 Score: 4.2 Sequence: ATGTTTGACTTTGCGCACAAAT Locus tag: plu0563
	plu0563	-223	4.2	ATGTTTGACTTTGCGCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: thrA
Ortholog function: Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3)
Escherichia coli str. K-12 substr. MG1655	b0002	-83	3.8	TTTATTGACTTAGGTCACTAAA
Salmonella typhimurium LT2	STM0002	-103	4.2	GAATGTGATCAATTTAAAAATT
Citrobacter koseri ATCC BAA-895	CKO_03385	-249	4.1	GAATGTGATCAAATTAAAAATT
Enterobacter sp. 638	Ent638_0564	-252	4.4	AATTGTGATCAAATTAGAAATT
Proteus mirabilis HI4320	PMI0001	-232	3.9	AAATTTGACATCTCTCTCGCTT
Photorhabdus luminescens subsp. laumondii TTO1	plu0563	-223	4.2	ATGTTTGACTTTGCGCACAAAT

Position: -120 Score: 4.3 Sequence: TTGCGTGATTGGTATCTCAGAT Locus tag: plu0575
	plu0575	-120	4.3	TTGCGTGATTGGTATCTCAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: galT
Ortholog function: galactose-1-phosphate uridylyltransferase
Escherichia coli str. K-12 substr. MG1655	b0758	-78	3.8	TAATTTATTCCATGTCACACTT
Salmonella typhimurium LT2	STM0775	-78	3.7	TAATTTATTACATGTCACACTT
Citrobacter koseri ATCC BAA-895	CKO_02377	-36	3.7	TAATATATTCCATGTCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00772	-78	3.7	TAACTTGTGCTATGTCACACTT
		-44	4.1	ATATGCTATCTTCCTCACAAAC
Yersinia pestis KIM	y3044	-163	3.7	TTATTTGTCTATGCTCACAGAA
Serratia proteamaculans 568	Spro_1292	-143	4	TTTTTCGCTCTGGATCACCTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3171	-154	4	TATAGTGAAACTGATTACATTG
Edwardsiella tarda EIB202	ETAE_2565	-195	3.7	TAGTGTAAGCGATACCACAAAC
Photorhabdus luminescens subsp. laumondii TTO1	plu0575	-120	4.3	TTGCGTGATTGGTATCTCAGAT

Position: 23 Score: 3.7 Sequence: TAATGTGATGAAGACTTTAATT Locus tag: plu0576
	plu0576	23	3.7	TAATGTGATGAAGACTTTAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: galK
Ortholog function: galactokinase
Escherichia coli str. K-12 substr. MG1655	b0757	-78	3.8	TAATTTATTCCATGTCACACTT
Salmonella typhimurium LT2	STM0774	-78	3.7	TAATTTATTACATGTCACACTT
Citrobacter koseri ATCC BAA-895	CKO_02378	-36	3.7	TAATATATTCCATGTCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00771	-78	3.7	TAACTTGTGCTATGTCACACTT
		-44	4.1	ATATGCTATCTTCCTCACAAAC
Yersinia pestis KIM	y3045	-163	3.7	TTATTTGTCTATGCTCACAGAA
Serratia proteamaculans 568	Spro_1291	-143	4	TTTTTCGCTCTGGATCACCTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3170	-154	4	TATAGTGAAACTGATTACATTG
Edwardsiella tarda EIB202	ETAE_2566	-195	3.7	TAGTGTAAGCGATACCACAAAC
Photorhabdus luminescens subsp. laumondii TTO1	plu0576	-120	4.3	TTGCGTGATTGGTATCTCAGAT

Position: -228 Score: 3.7 Sequence: TAAGATGATTTAAACCGCATTT Position: -122 Score: 4.4 Sequence: TATTGAGATGTAGATCATCAAT Locus tag: plu0587
	plu0587	-228	3.7	TAAGATGATTTAAACCGCATTT
		-122	4.4	TATTGAGATGTAGATCATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nhaA
Ortholog function: Na+/H+ antiporter NhaA type
Salmonella typhimurium LT2	STM0039	-97	3.7	AAACGAGCTATTCATCATATAT
Yersinia pestis KIM	y3704	-147	4.1	AAATGTGATATGCGTTATCAAT
Serratia proteamaculans 568	Spro_0694	-120	4.7	AAGTGTGATATAAATCGCTTAT
Proteus mirabilis HI4320	PMI0011	-110	3.9	ATAAGCGATTGAGATCGAAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu0587	-122	4.4	TATTGAGATGTAGATCATCAAT

Position: -301 Score: 3.7 Sequence: TTTTGTGGAATTGGTCACGGAT Position: -167 Score: 3.6 Sequence: TGGTTTAATGTCGATCACCGTA Locus tag: plu0799
	plu0799	-301	3.7	TTTTGTGGAATTGGTCACGGAT
		-167	3.6	TGGTTTAATGTCGATCACCGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tnaA
Ortholog function: Tryptophanase (EC 4.1.99.1)
Escherichia coli str. K-12 substr. MG1655	b3708	-94	5	GATTGTGATTCGATTCACATTT
Citrobacter koseri ATCC BAA-895	CKO_02849	-298	4.7	TTTTGTGATTTTTATCGCGGAT
Edwardsiella tarda EIB202	ETAE_0843	-231	4.1	ACGCGTGAATTCCATCACAATT
Photorhabdus luminescens subsp. laumondii TTO1	plu0799	-167	3.6	TGGTTTAATGTCGATCACCGTA

Position: -144 Score: 4 Sequence: AATTCTGATATGCTTTGCAAAA Locus tag: plu0860
	plu0860	-144	4	AATTCTGATATGCTTTGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hpt
Ortholog function: hypoxanthine phosphoribosyltransferase
Escherichia coli str. K-12 substr. MG1655	b0125	-147	5.3	ATGTGTGATCGTCATCACAATT
Salmonella typhimurium LT2	STM0170	-147	5.3	ATGTGTGATCGTCATCACAAAA
Citrobacter koseri ATCC BAA-895	CKO_03242	-135	5.3	AAGTGTGATCGTCATCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00133	-134	5.4	AAGTGTGATCGGAATCACAAAT
Enterobacter sp. 638	Ent638_0673	-180	3.6	AATTTTGATAGCAATTAATTAT
		-148	5.4	AAGTGTGATCGGAATCACAAAT
Proteus mirabilis HI4320	PMI0160	-154	3.6	TACTGTAATAAGTAACAAAATT
Photorhabdus luminescens subsp. laumondii TTO1	plu0860	-144	4	AATTCTGATATGCTTTGCAAAA

Position: -129 Score: 4.9 Sequence: TATTGTTACTGAGATCACAATT Locus tag: plu0990
	plu0990	-129	4.9	TATTGTTACTGAGATCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hpaG
Ortholog function: 4-hydroxyphenylacetate catabolism
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04789	-125	4.4	TTGTGTTAATCCGATCACAAAA
Serratia proteamaculans 568	Spro_0625	-123	5	TTTTGTTATCACGATCACAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu0990	-159	3.7	AATAATGATAAAAAACAAATTT
		-129	4.9	TATTGTTACTGAGATCACAATT

Position: -279 Score: 5 Sequence: AATTGTGATCTCAGTAACAATA Locus tag: plu0991
	plu0991	-279	5	AATTGTGATCTCAGTAACAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hpaR
Ortholog function: 4-hydroxyphenylacetate catabolism
Yersinia pestis KIM	y2548	-253	5	ATTCGTGATCTTGATAACAATT
Serratia proteamaculans 568	Spro_0624	-224	5.2	ATTTGTGATCGTGATAACAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu0991	-285	3.9	AATTTTAATTGTGATCTCAGTA
		-279	5	AATTGTGATCTCAGTAACAATA

Position: -232 Score: 3.9 Sequence: TCAAGTGATTTAGTTCAAGCAA Locus tag: plu1195
	plu1195	-232	3.9	TCAAGTGATTTAGTTCAAGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yafK
Ortholog function: hypothetical protein
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00238	-208	3.7	AAATGCGAGCTATTGCGCAAAG
Yersinia pestis KIM	y0949	-217	3.7	TTATTTTATACAAAACATATAT
Serratia proteamaculans 568	Spro_0952	-136	4.2	TTTTTTTATACACAACACATAT
Proteus mirabilis HI4320	PMI0351	-297	3.7	AATTGTTACTATTTTCTCTTAT
		-228	3.7	TCGAGTGATTTAGCTCAAGCAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1195	-232	3.9	TCAAGTGATTTAGTTCAAGCAA

Position: -262 Score: 3.6 Sequence: TGTTTTGATATTGATTTTATTT Locus tag: plu1262
	plu1262	-262	3.6	TGTTTTGATATTGATTTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroF
Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase
Salmonella typhimurium LT2	STM2670	-71	3.9	TTTTGTGGTATGGTTTAAACAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02923	-159	3.8	TATTGTTATACGCATCGCGCCA
Edwardsiella tarda EIB202	ETAE_2837	-117	3.8	ATGTACGATATTGTTTACATAT
Proteus mirabilis HI4320	PMI0387	-214	4.5	TTATTTTATCTTAGTCACATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1262	-262	3.6	TGTTTTGATATTGATTTTATTT

Position: -87 Score: 5.1 Sequence: AATAGTGATTTAGATCACCTTT Locus tag: plu1266
	plu1266	-87	5.1	AATAGTGATTTAGATCACCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: raiA
Ortholog function: stationary phase translation inhibitor and ribosome stability factor
Escherichia coli str. K-12 substr. MG1655	b2597	-81	4.8	TTATGAGATTTTCATCACACAT
Citrobacter koseri ATCC BAA-895	CKO_03918	-40	5.2	TAATGTGATTTAAATCACGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02919	-88	5.6	AAATGTGATTTATATCACACAT
Enterobacter sp. 638	Ent638_3076	-81	5.4	ATGTGTGATTTAGATCACACAT
Erwinia amylovora ATCC 49946	EAM_2617	-83	5.2	AAATGTGATTTCAATCACGATT
Serratia proteamaculans 568	Spro_0882	-83	4.8	ATACGTGATTTTCATCACGCAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3349	-86	4	AAAAGCGATCAATCTCACGCTT
Edwardsiella tarda EIB202	ETAE_2834	-82	3.8	ATCCGTGATTTTCCTCTCACAC
Proteus mirabilis HI4320	PMI0391	-82	4.6	AAAAGTGATCTTGATCATGTTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1266	-87	5.1	AATAGTGATTTAGATCACCTTT

Position: -132 Score: 3.9 Sequence: TATCGCTACAGTGATCACAATT Locus tag: plu1318
	plu1318	-132	3.9	TATCGCTACAGTGATCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagE
Ortholog function: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655	b0679	-176	4.4	TTTGGTGACAAAACTCACAAAA
		-142	4.2	ATTTGCGATACGAATTAAATTT
Salmonella typhimurium LT2	STM0685	-177	4.8	TTTAGTGATTATAATCACAAAA
Citrobacter koseri ATCC BAA-895	CKO_02485	-181	4.9	TTTGGTGATTCAAATCACAAAA
		-147	3.6	ATTTGCGATACGAATTAATTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00700	-153	4.7	TTTGGTGATAATTATCACAAAA
		-119	3.6	ATTTGCGATACGAATTAATTTT
Erwinia amylovora ATCC 49946	EAM_1148	-161	4.8	TAAGGTGACTTTAATCACATAT
Serratia proteamaculans 568	Spro_1228	-162	5.1	TTTGGTGATGTAAATCACAAAA
		-44	3.9	AAATATGATAAAGCTCATTAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1318	-200	3.7	AAATTTGAACCCGTTTACTATT
		-132	3.9	TATCGCTACAGTGATCACAATT

Position: -213 Score: 3.8 Sequence: TAATGTGATATCTATACTCTAT Locus tag: plu1399
	plu1399	-213	3.8	TAATGTGATATCTATACTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nupC
Ortholog function: Nucleoside permease NupC
Proteus mirabilis HI4320	PMI1822	-132	3.9	AAGTGTGATCAACCTATCTTAT
		-80	4.4	TATTGTGACAATAATCACATCG
		-58	3.8	TAATGTTACGCGTTACATAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1399	-213	3.8	TAATGTGATATCTATACTCTAT

Position: -334 Score: 3.9 Sequence: AATAATAATGTGAAGCACATAT Locus tag: plu1426
	plu1426	-334	3.9	AATAATAATGTGAAGCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Enterobacter sp. 638	Ent638_1222	-295	4.2	TATCGTGACTGTGATCACTGTT
Erwinia amylovora ATCC 49946	EAM_1168	-249	4.4	AAGTGTGATTTTTGTCACTGTT
		-190	3.6	TAATGAGATTGTGATCCACTTA
Yersinia pestis KIM	y3071	-254	4.5	AATCGTGATCCTAATCACTGTT
Serratia proteamaculans 568	Spro_1263	-253	4.3	ATCCGTGATCTAAATCACTGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1357	-265	4.7	ATTCGTGATCTAAATCACTGTT
Edwardsiella tarda EIB202	ETAE_2588	-261	3.7	ATGCGTGACCGTTGTCACTGTT
Proteus mirabilis HI4320	PMI0565	-264	4.3	AAAAGTGATCCCTCTCACTGTT

Position: -318 Score: 3.9 Sequence: TATTGTGAACGTAATGTCATTA Locus tag: plu1538
	plu1538	-318	3.9	TATTGTGAACGTAATGTCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybiT
Ortholog function: ABC transporter ATP-binding protein
Escherichia coli str. K-12 substr. MG1655	b0820	-124	4.4	AGATGTGTACGAAATCACATTT
Salmonella typhimurium LT2	STM0838	-124	4	AGATGTGTACGAAATCACGTTT
Citrobacter koseri ATCC BAA-895	CKO_02298	-148	4.4	AGATGTGTACGAAATCACATTT
Enterobacter sp. 638	Ent638_1311	-125	4.4	AGATGTGTACGAAATCACATTT
Yersinia pestis KIM	y2677	-295	3.9	TATCGTTATACCCGTCATACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3010	-41	4	TAATGCGCGCCAAATCACATTC
Edwardsiella tarda EIB202	ETAE_2518	-40	4.8	TAATGTGAACAAAATCACGTTA

Position: -75 Score: 4.7 Sequence: CTATATGATATTTATCACATTA Locus tag: plu1547
	plu1547	-75	4.7	CTATATGATATTTATCACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cdd
Ortholog function: cytidine deaminase
Escherichia coli str. K-12 substr. MG1655	b2143	-128	4.3	ATTTGCGATGCGTCGCGCATTT
		-78	5.1	TAATGAGATTCAGATCACATAT
Salmonella typhimurium LT2	STM2183	-128	4.2	ATTTGCGATACGTCGCGCATTT
		-78	4.8	CAATGAGATTTAGATCACATAT
Citrobacter koseri ATCC BAA-895	CKO_00646	-128	4.3	ATTTGCGATGCGTCGCGCATTT
		-78	4.8	CAATGAGATTTGGATCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02584	-78	4.4	GAATGAGATATTCATCACATAT
Enterobacter sp. 638	Ent638_2746	-127	4.2	ATTTGCGATGCGTCGCGCAATT
		-77	4.9	TAATGAGAACTGGATCACATAT
Erwinia amylovora ATCC 49946	EAM_2202	-124	3.9	ACTTGCGATAAGTCTCTCATTT
		-104	4.1	TTTGGTGATGCATTTCATTTAT
		-74	4.7	TAGAGCGATTTAGATCACATAT
Yersinia pestis KIM	y2657	-75	5	TAATGAGATATAAATCACAATT
Serratia proteamaculans 568	Spro_1568	-127	4.1	ACTTGCGATACATCTCGCAATT
		-77	4.5	TAAAGAGATTTACATCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2830	-130	4.6	AATTGAGATACATCTCGCATTT
		-79	4.5	TAAAGAGATTCCGATCACAATT
Edwardsiella tarda EIB202	ETAE_1162	-76	4.9	AAAAGTGATTATTATCACAAAT
Proteus mirabilis HI4320	PMI0643	-132	4.4	ATTTGAGATGTATCTCCCAATT
		-82	5.1	AAATATGATTTTAATCACATAT
Photorhabdus luminescens subsp. laumondii TTO1	plu1547	-75	4.7	CTATATGATATTTATCACATTA

Position: -193 Score: 3.9 Sequence: ATTTGTTAATGTGATCACATGT Locus tag: plu1559
	plu1559	-193	3.9	ATTTGTTAATGTGATCACATGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yegH
Ortholog function: putative membrane protein
Escherichia coli str. K-12 substr. MG1655	b2063	-43	4.6	AATTGTGACATTTGTCATACAA
Salmonella typhimurium LT2	STM2119	-42	4.5	AATTGTGACAATTGTCATATTA
Citrobacter koseri ATCC BAA-895	CKO_00719	-42	4.5	AATTGTGACAACTGTCATATAA
Enterobacter sp. 638	Ent638_2677	-42	4.4	AAGTGTGACAAATGTCATATAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1559	-193	3.9	ATTTGTTAATGTGATCACATGT

Position: -74 Score: 4.4 Sequence: ACATGTGATCACATTAACAAAT Locus tag: plu1560
	plu1560	-74	4.4	ACATGTGATCACATTAACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gnd
Ortholog function: hypothetical protein
Enterobacter sp. 638	Ent638_2642	-116	4	CAGTGTGACATAGATCAGCAAA
Yersinia pestis KIM	y2629	-78	3.8	AGTTGTGCTATCTATCGCACCA
		-76	3.6	TTGTGCTATCTATCGCACCAAT
Serratia proteamaculans 568	Spro_1608	-297	3.7	ATGCTTGAAGTGGCTCTCACTT
		-72	4.2	ACATGTGTGCCACATCACAAAA
Proteus mirabilis HI4320	PMI0655	-71	4.7	CTATGTGATCAGGTTAACAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu1560	-74	4.4	ACATGTGATCACATTAACAAAT

Position: -329 Score: 3.9 Sequence: TTTCGGGATGTATTCCGCATTT Position: -311 Score: 3.9 Sequence: ATTTGAGACTATGATCACGGTA Locus tag: plu1578
	plu1578	-329	3.9	TTTCGGGATGTATTCCGCATTT
		-311	3.9	ATTTGAGACTATGATCACGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdaC
Ortholog function: Serine transporter
Escherichia coli str. K-12 substr. MG1655	b2796	-179	4.2	ATTTGAGATCAAGATCACTGAT
Salmonella typhimurium LT2	STM2970	-176	4.2	ATTTGAGATCGGGATCACTGAT
Citrobacter koseri ATCC BAA-895	CKO_04152	-176	4.1	ATTTGGGATCGCGATCACTGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03139	-158	4.2	ATTTGAGATCGCGATCACTGAT
Enterobacter sp. 638	Ent638_3249	-176	4.1	ATTTGGGATCAGGATCACTGAT
Erwinia amylovora ATCC 49946	EAM_1294	-300	3.6	ATTTGTTAAAAATCGCAAAAAA
		-180	3.9	AAATGTGATTCCGATCACCGGC
Yersinia pestis KIM	y2862	-286	4.3	AATTGAGATCACGATCACGGTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3158	-195	3.7	TTCTGTGATCGCCTCAATATTA
Proteus mirabilis HI4320	PMI0672	-283	4.3	ATTTGAGATGGTGATCACGGTA

Position: -194 Score: 4.6 Sequence: TATCGTTATCTATATCAAACTT Locus tag: plu1592
	plu1592	-194	4.6	TATCGTTATCTATATCAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cspD
Ortholog function: cold shock-like protein
Escherichia coli str. K-12 substr. MG1655	b0880	-180	4	TAGCGTTAACTGCTTCAAATTT
Salmonella typhimurium LT2	STM0943	-181	4	TAGCGTTAACTGCTTCAAATTT
Citrobacter koseri ATCC BAA-895	CKO_02200	-210	3.9	ATCCGCGACATCTGTCACATTA
		-181	4	TAGCGTTAACTGCTTCAAATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00913	-270	4.2	AGAGGTTATGCTCATCACAAAT
		-180	4	TAGCGTTAACTGCTTCAAATTT
Enterobacter sp. 638	Ent638_1397	-209	3.8	ATCCGCGATATCTGTCACATTC
		-180	3.9	TAGCGTTAACTGCTTCAAAAAT
Serratia proteamaculans 568	Spro_1672	-205	4	TAGCGTTACCTGCTTCAAACTT
		-49	3.9	TTCAGTTATTCATCTCACCTAA
Proteus mirabilis HI4320	PMI0688	-163	3.8	AAGCGTTAGCTACATCAAAGTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1592	-194	4.6	TATCGTTATCTATATCAAACTT

Position: -170 Score: 4.3 Sequence: AAGTTTGATATAGATAACGATA Locus tag: plu1593
	plu1593	-170	4.3	AAGTTTGATATAGATAACGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: clpS
Ortholog function: ATP-dependent Clp protease adaptor protein
Escherichia coli str. K-12 substr. MG1655	b0881	-164	4	AAATTTGAAGCAGTTAACGCTA
Salmonella typhimurium LT2	STM0944	-164	4	AAATTTGAAGCAGTTAACGCTA
		-104	3.6	AGATGTTAGTTATCTATCAATT
Citrobacter koseri ATCC BAA-895	CKO_02199	-164	4	AAATTTGAAGCAGTTAACGCTA
		-135	4.2	TAATGTGACAGATGTCGCGGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00914	-167	4	AAATTTGAAGCAGTTAACGCTA
		-77	4.3	ATTTGTGATGAGCATAACCTCT
Enterobacter sp. 638	Ent638_1398	-161	3.9	ATTTTTGAAGCAGTTAACGCTA
		-132	3.8	GAATGTGACAGATATCGCGGAT
Erwinia amylovora ATCC 49946	EAM_1320	-161	4	AAATTTGAAGCAGTTAACGCTA
		-132	4.5	TTTTGTGATAGAGGTCGCTATT
Serratia proteamaculans 568	Spro_1673	-176	3.6	AAGTTTGAAGCAGGTAACGCTA
Edwardsiella tarda EIB202	ETAE_2208	-164	3.8	AAGTTTGAGGCAGTTAACGCAA
		-144	3.6	AATTGTGCGGCAGTGCGCTTTT
Proteus mirabilis HI4320	PMI0689	-268	3.7	TGTCTTTATTTACTTAACATTA
		-148	4.1	AACTTTGATGTAGCTAACGCTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1593	-170	4.3	AAGTTTGATATAGATAACGATA

Position: -88 Score: 4.7 Sequence: AATTATGATCTATATCAAATTC Locus tag: plu1614
	plu1614	-88	4.7	AATTATGATCTATATCAAATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: focA
Ortholog function: formate transporter
Escherichia coli str. K-12 substr. MG1655	b0904	-156	3.6	TATTTTTATTTGGATAATCAAA
		-78	3.8	AGATATGATCTATATCAATTTC
Salmonella typhimurium LT2	STM0974	-78	4.4	AGATATGATCTATATCAAATTC
Citrobacter koseri ATCC BAA-895	CKO_02167	-198	3.6	TATTTTTATTTGGATAATCAAA
		-120	4.4	AGATATGATCTATATCAAATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00932	-121	3.8	AGATATGATCTATATCAATTTC
Enterobacter sp. 638	Ent638_1424	-78	3.8	AGATATGATCTATATCAATTTC
Yersinia pestis KIM	y2789	-84	4	CAATATGATCCATATCAATTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2596	-79	4.5	CAATATGATCCACATCAAATTT
Proteus mirabilis HI4320	PMI0706	-188	4	TTTTTTGATAAAATTTAAAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1614	-88	4.7	AATTATGATCTATATCAAATTC

Position: -76 Score: 3.8 Sequence: AAGTCTGGTATGTATCACAGAT Locus tag: plu1616
	plu1616	-76	3.8	AAGTCTGGTATGTATCACAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ansB
Ortholog function: periplasmic L-asparaginase II
Escherichia coli str. K-12 substr. MG1655	b2957	-125	4	TTTTGTTACCTGCCTCTAACTT
Salmonella typhimurium LT2	STM3106	-125	4.3	TTTTGTTATCCATCTCTAAAAA
Citrobacter koseri ATCC BAA-895	CKO_04332	-125	3.6	TTTTGATATCCATCTCTAAAAA
Proteus mirabilis HI4320	PMI0708	-81	3.6	ATTCGTTCTATTTATCACGGAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1616	-76	3.8	AAGTCTGGTATGTATCACAGAT

Position: -230 Score: 3.7 Sequence: ATTTGATATCAGTATCGCAATG Position: -152 Score: 4.4 Sequence: ATTTGCGAAGCTGTTCGCATAT Locus tag: plu1629
	plu1629	-230	3.7	ATTTGATATCAGTATCGCAATG
		-152	4.4	ATTTGCGAAGCTGTTCGCATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycaI
Ortholog function: hypothetical protein
Salmonella typhimurium LT2	STM0983	-120	4.1	TTTTTTGCTGCGTCTTACATTT
Proteus mirabilis HI4320	PMI0717	-212	3.6	TTACGTGATCTTTCTCTATTTG
		-152	3.6	TTTTTAGAACAACTTCGCAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1629	-230	3.7	ATTTGATATCAGTATCGCAATG
		-152	4.4	ATTTGCGAAGCTGTTCGCATAT

Position: -340 Score: 4.9 Sequence: TTTTGTGAGTTATGTCACATAG Locus tag: plu1847
	plu1847	-340	4.9	TTTTGTGAGTTATGTCACATAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: flhD
Ortholog function: DNA-binding transcriptional dual regulator with FlhC
Proteus mirabilis HI4320	PMI1672	-158	3.6	TGAAATGATCGTAATCAAGTAA

Position: -243 Score: 4.4 Sequence: AAATGTGATTCAGTAAACGTTT Locus tag: plu1958
	plu1958	-243	4.4	AAATGTGATTCAGTAAACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: putP
Ortholog function: Proline/sodium symporter PutP (TC 2.A.21.2.1)
Escherichia coli str. K-12 substr. MG1655	b1015	-207	3.6	AAATGTGAGAGAGTGCAACCTG
Salmonella typhimurium LT2	STM1125	-204	3.6	AAATGTGAGAGAGTGCAACCTG
Citrobacter koseri ATCC BAA-895	CKO_02041	-80	3.6	AAATGTGAGAGAGTGCAACCTG
Enterobacter sp. 638	Ent638_1542	-249	3.7	TTTTATGCGGCACTTAACACTT
Serratia proteamaculans 568	Spro_2930	-211	3.9	AAATGTGACGCAGGGTAAACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4218	-130	3.7	TTGTGCAACCTTGTTAACAAAT
Proteus mirabilis HI4320	PMI1615	-220	3.8	TAGTGTGAAGTTACATACAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1958	-243	4.4	AAATGTGATTCAGTAAACGTTT

Position: -102 Score: 4.6 Sequence: TATAGTAATCTGTGTCACAATA Locus tag: plu1965
	plu1965	-102	4.6	TATAGTAATCTGTGTCACAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cycA2
Ortholog function: D-alanine/D-serine/glycine permease
Escherichia coli str. K-12 substr. MG1655	b4208	-198	4.7	TTTTGTGAGCTGTTTCGCGTTA
Salmonella typhimurium LT2	STM4398	-193	5.1	TTTTGTGAGCTAATTCGCATTA
		-170	3.9	CAAAGTGATATAACACTCATTT
Citrobacter koseri ATCC BAA-895	CKO_03624	-199	4.4	TTTTGTGAGCTAATTCGCGTTG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04601	-192	4.7	TTTTGTGAGCTATTTCGCGTTA
		-169	3.8	ATGAGTGATATAACACTCACTT
Enterobacter sp. 638	Ent638_0378	-201	4.2	TTTTGTGAGCTGTTTTGCATTG
Yersinia pestis KIM	y2447	-199	4.5	CACTGTGATGTACTTAACAAAA
		-118	3.7	TAATATTAAATTATTCGCAAAT
Proteus mirabilis HI4320	PMI1614	-102	4.4	TTCTGAGATTTGTGTCACAATA
Photorhabdus luminescens subsp. laumondii TTO1	plu1965	-102	4.6	TATAGTAATCTGTGTCACAATA

Position: -124 Score: 4.4 Sequence: TTCAGTGATACCGATCAAAATT Position: -94 Score: 4.5 Sequence: ATTTGCGATTTAAATCACTAAA Locus tag: plu1968
	plu1968	-124	4.4	TTCAGTGATACCGATCAAAATT
		-94	4.5	ATTTGCGATTTAAATCACTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dsdC
Ortholog function: DNA-binding transcriptional dual regulator
Escherichia coli str. K-12 substr. MG1655	b2364	-115	3.9	TGGAGTGATTTACATCTAAAAA
		-85	4.6	AATTGAGATATGGTTCACTTTA
Salmonella typhimurium LT2	STM3800	-142	3.8	TGATGTAAATTGAATCAACTAT
		-124	4.5	CTATGTGATTTCCATCTAATAT
		-94	4.2	TTTTGCGATATGGTTCATTTTA
Citrobacter koseri ATCC BAA-895	CKO_00019	-32	3.9	AAGGGTGATTTGCATCCAATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04079	-125	3.9	AAAGGTGATTTAGCTCTAAAAG
		-95	4.2	AAATATGCTATGGGTCAAATTA
Serratia proteamaculans 568	Spro_2451	-76	3.6	TTTAGCGACATGGGTCAACTTT
Proteus mirabilis HI4320	PMI0184	-199	3.6	TATTGTTAAACATATTGAATAT
		-117	4.4	ATAGGTGATCAGATGCACAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu1968	-124	4.4	TTCAGTGATACCGATCAAAATT
		-94	4.5	ATTTGCGATTTAAATCACTAAA

Position: -169 Score: 4.9 Sequence: TTTAGTGATTTAAATCGCAAAT Position: -139 Score: 4.4 Sequence: AATTTTGATCGGTATCACTGAA Locus tag: plu1969
	plu1969	-169	4.9	TTTAGTGATTTAAATCGCAAAT
		-139	4.4	AATTTTGATCGGTATCACTGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dsdX
Ortholog function: DsdX permease
Proteus mirabilis HI4320	PMI0186	-126	4.4	ATTTGTGCATCTGATCACCTAT
		-44	3.6	ATATTCAATATGTTTAACAATA
Photorhabdus luminescens subsp. laumondii TTO1	plu1969	-169	4.9	TTTAGTGATTTAAATCGCAAAT
		-139	4.4	AATTTTGATCGGTATCACTGAA

Position: -232 Score: 3.6 Sequence: AGTTGTAGTAAACATAACATAT Locus tag: plu1970
	plu1970	-232	3.6	AGTTGTAGTAAACATAACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dsdA
Ortholog function: D-serine dehydratase
Escherichia coli str. K-12 substr. MG1655	b2366	-154	4.4	TAAAGTGAACCATATCTCAATT
Salmonella typhimurium LT2	STM3802	-153	4	TAAAATGAACCATATCGCAAAA
		-123	4.2	ATATTAGATGGAAATCACATAG
Citrobacter koseri ATCC BAA-895	CKO_00021	-124	4	TTATTGGATGCAAATCACCCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04081	-152	4.3	TAATTTGACCCATAGCATATTT
		-122	3.7	CTTTTAGAGCTAAATCACCTTT
Serratia proteamaculans 568	Spro_2515	-123	3.7	TAAATTGACGAGCATCATCTTT
Proteus mirabilis HI4320	PMI0187	-126	4.4	ATTTGTGCATCTGATCACCTAT
		-44	3.6	ATATTCAATATGTTTAACAATA

Position: -145 Score: 4.7 Sequence: AATTGTGATAGCGCTATCATTT Locus tag: plu1978
	plu1978	-145	4.7	AATTGTGATAGCGCTATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: CKO_00488
Ortholog function: LacI-family transcriptional regulator
Salmonella typhimurium LT2	STM2345	-192	4	AGCTGCGATCGTTATCACAAAG
		-143	4.6	AATTGTGATAGCGCTATCAAAT
Citrobacter koseri ATCC BAA-895	CKO_00488	-192	4.6	ATCTGTGATCATATTCACAAAG
		-143	4.5	ATATGTGATAGCGCTATCAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01748	-155	4.2	AACTGTGATACACCTCCCAAAG
		-53	3.6	AGTTATAATGCGATTCGCAGAT
Enterobacter sp. 638	Ent638_2847	-178	4.1	AGCTGCGATCAAGATCACAAAG
		-129	4.6	AATTGTGATAGCGCTATCAAAT
Yersinia pestis KIM	y1619	-208	5.4	TAATGTGATCTGGATCTCAATT
		-158	4.6	ATTTGTGATAGCGCTATCATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3772	-246	4.5	TAATGTGATTAACATCCAAAAA
		-196	4	AACTGTGACCGGCTTAGCACAA
Edwardsiella tarda EIB202	ETAE_3025	-210	4.3	TTTCGTGATAGCGCTATCATTT
Proteus mirabilis HI4320	PMI1778	-139	4.2	AATTGTGATAGCGCTATTATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1978	-195	3.8	GCTAGTGATATTAGTCACAAAT
		-145	4.7	AATTGTGATAGCGCTATCATTT

Position: -180 Score: 4.7 Sequence: AAATGTGAGTAATCTCAAAAAA Locus tag: plu1992
	plu1992	-180	4.7	AAATGTGAGTAATCTCAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fruB
Ortholog function: PTS system, fructose-specific IIA/FPr component
Escherichia coli str. K-12 substr. MG1655	b2169	-178	4.3	AATTGTGCAGCACATCAAACTT
Salmonella typhimurium LT2	STM2206	-177	4.6	AAATGTGCTTCACCTCAAAAAA
Citrobacter koseri ATCC BAA-895	CKO_00613	-50	4.1	AAGTGTGCTTTATCTCTAAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02600	-177	3.5	AAGTGTGCAGTACCTCTAAGTT
Enterobacter sp. 638	Ent638_2763	-178	4.3	AAATGTGCTGCACTTCTAAATT
Erwinia amylovora ATCC 49946	EAM_2223	-179	4.4	AAATGTGCTGGCTGTCAAAAAT
Yersinia pestis KIM	y2887	-178	4.1	AAATGTGCGGAATGTCAAAAAT
Serratia proteamaculans 568	Spro_3230	-177	4	AAGTGTGCGTGAGGTCAAAAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2729	-180	4.1	AAATGTGCGTGATGTCAAAATT
Edwardsiella tarda EIB202	ETAE_2303	-199	4.1	AAATGTGCTGAAGGTCTAAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu1992	-180	4.7	AAATGTGAGTAATCTCAAAAAA

Position: -189 Score: 4.1 Sequence: AGTTGTGATCGTGTCCGCAATG Locus tag: plu2065
	plu2065	-189	4.1	AGTTGTGATCGTGTCCGCAATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ychH
Ortholog function: membrane protein
Escherichia coli str. K-12 substr. MG1655	b1205	-105	4.5	AATTGTGATCACGCCCGCACAT
Salmonella typhimurium LT2	STM1782	-105	4.4	ATTTGTGATCGCACCCGCACTT
Citrobacter koseri ATCC BAA-895	CKO_01260	-104	4.1	AATTGTGATCGCCCACGCACTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02241	-100	4.1	TAATGTGATCGTGGACGCACTC
Enterobacter sp. 638	Ent638_2343	-119	3.7	TGTTGTGACGAGAGTCATTAAT
		-101	4	TAATGTGATCATTCACGCAACT
Erwinia amylovora ATCC 49946	EAM_1581	-97	3.9	AAATGTGATCGCTGACTCATCA
Yersinia pestis KIM	y2296	-145	3.9	AGTTGTGATCGCTACCGCAACA
Serratia proteamaculans 568	Spro_1985	-117	4.2	ATTTGTGATCGCCTACGCAATC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2185	-275	3.6	TAGCGTGATTATGAGAACGCTA
		-117	3.8	ATCTGTGATCCCTCCCGCAATC
Photorhabdus luminescens subsp. laumondii TTO1	plu2065	-189	4.1	AGTTGTGATCGTGTCCGCAATG

Position: -315 Score: 3.6 Sequence: TTTTGTTACAGCATTAACCGAT Position: -132 Score: 3.7 Sequence: TTTTATGAAAAACATTAAATTA Locus tag: plu2121
	plu2121	-315	3.6	TTTTGTTACAGCATTAACCGAT
		-132	3.7	TTTTATGAAAAACATTAAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hexR
Ortholog function: Phosphogluconate repressor HexR, RpiR family
Escherichia coli str. K-12 substr. MG1655	b1853	-151	3.9	AAATCTGACACTGATCATGTTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02368	-134	3.6	AAATACGACCCTGATCATGTAA
Yersinia pestis KIM	y2245	-152	3.7	AAATTAGACACAGGTCATATTA
Proteus mirabilis HI4320	PMI1156	-58	3.6	AACCGTTATAGATTTCTCCTTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2121	-132	3.7	TTTTATGAAAAACATTAAATTA

Position: -234 Score: 4.2 Sequence: TAATTTAATGTTTTTCATAAAA Locus tag: plu2122
	plu2122	-234	4.2	TAATTTAATGTTTTTCATAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: zwf
Ortholog function: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Escherichia coli str. K-12 substr. MG1655	b1852	-208	3.9	TAACATGATCAGTGTCAGATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02367	-225	3.8	TTACATGATCAGGGTCGTATTT
Yersinia pestis KIM	y2244	-231	4.1	TAATATGACCTGTGTCTAATTT
Proteus mirabilis HI4320	PMI1157	-225	3.7	AAGTATGACCTGTGTCTAACTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2122	-234	4.2	TAATTTAATGTTTTTCATAAAA

Position: -288 Score: 3.8 Sequence: AAATGCTATCTTAAGCAAAAAA Position: -137 Score: 4 Sequence: ATTAGTGATGTGTATCTCAACC Locus tag: plu2134
	plu2134	-288	3.8	AAATGCTATCTTAAGCAAAAAA
		-137	4	ATTAGTGATGTGTATCTCAACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadD
Ortholog function: long-chain-fatty-acid--CoA ligase
Escherichia coli str. K-12 substr. MG1655	b1805	-131	3.7	AATAGTGACGCGCTTCGCAACC
Salmonella typhimurium LT2	STM1818	-131	3.7	AATAGTGACGCGCTTCGCAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02322	-97	3.7	AATAGTGACGCGCTTCGCAACC
Erwinia amylovora ATCC 49946	EAM_1956	-130	3.9	TTTAGTGATGCGCTTCGCAACC
Yersinia pestis KIM	y2236	-80	4.1	AATAGTGATGTATATCTCAACC
Serratia proteamaculans 568	Spro_2760	-99	3.9	ATTAGTGACGTACATCGCAACC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2372	-132	3.8	ATTAGTGATCGTTCTCGCAACC
		-75	3.7	TAAAATAATGTTAATAACAATA
Proteus mirabilis HI4320	PMI1166	-121	4.4	TTTAGTGATACACTTCGCATCT
Photorhabdus luminescens subsp. laumondii TTO1	plu2134	-288	3.8	AAATGCTATCTTAAGCAAAAAA
		-137	4	ATTAGTGATGTGTATCTCAACC

Position: -119 Score: 4.8 Sequence: TTTCGTGCTGAATATCACATAT Locus tag: plu2226
	plu2226	-119	4.8	TTTCGTGCTGAATATCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mlc
Ortholog function: ROK family transcriptional regulatory protein
Escherichia coli str. K-12 substr. MG1655	b1594	-108	4.1	AAATGTGCTGTTAATCACATGC
Salmonella typhimurium LT2	STM1488	-65	3.8	AGTATTGAAGTGTTTCACCATA
Citrobacter koseri ATCC BAA-895	CKO_01593	-107	3.6	AAaTGTGcagTAaATCACAcgg
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01574	-104	3.8	AAATGTGCGGTAAATCACAAGG
Enterobacter sp. 638	Ent638_1919	-107	3.8	AAATGTGCGGTAAATCACAAGG
Erwinia amylovora ATCC 49946	EAM_1710	-143	4.9	TTATGTGCTGTAAATCACATTC
Yersinia pestis KIM	y2110	-146	4.8	TTATGTGCAGCAAATCACATAA
Serratia proteamaculans 568	Spro_2283	-111	4.8	ATTTGTGCAGCAAATCACATAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2258	-226	4.4	ATATGCGCGCTAAATCACATAA
Edwardsiella tarda EIB202	ETAE_1713	-113	4.8	ATTTGTGCACTTAATCACATAA
Proteus mirabilis HI4320	PMI1292	-126	4.7	ATATGTGCTTTCCATCACGATT
Photorhabdus luminescens subsp. laumondii TTO1	plu2226	-119	4.8	TTTCGTGCTGAATATCACATAT

Position: -83 Score: 4.2 Sequence: AATTGTGTGATTTATCTCATAA Position: -81 Score: 4.9 Sequence: TTGTGTGATTTATCTCATAAAT Locus tag: plu2274
	plu2274	-83	4.2	AATTGTGTGATTTATCTCATAA
		-81	4.9	TTGTGTGATTTATCTCATAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylR
Ortholog function: Xylose activator XylR (AraC family)
Escherichia coli str. K-12 substr. MG1655	b3569	-253	4.2	AAGTGTGCGCTCGCTCGCAAAA
		-163	3.7	AAGTAAGATCTCGGTCATAAAT
Salmonella typhimurium LT2	STM3662	-251	4.8	AAATGTGCTCTGGCTCTCAAAA
		-124	4.5	TGCTGTGATGAATTTCGCATAA
Citrobacter koseri ATCC BAA-895	CKO_05026	-254	4.1	AAGTGTGCGCCGCCTCGCAAAA
		-162	3.8	AAGTACGATCTCGGTCATAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03933	-234	3.8	AAATACGATCGCCGTCATAATT
Enterobacter sp. 638	Ent638_0152	-264	3.9	AAACGTGCGCTGGCTCCCAAAA
Yersinia pestis KIM	y4053	-264	4.8	AATTGTGGTGTAGATCTCATAA
		-160	4.2	AAACATGATCGTTATCATAAAA
Serratia proteamaculans 568	Spro_0102	-259	4.4	AAATGTGCGACAGATCTCATAA
		-166	3.7	AAGCATGACCGCCATCATAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0101	-272	4.5	AAATATGACCCGCATCAAAAAA
Proteus mirabilis HI4320	PMI1276	-93	4.9	TTGTGTGATAGTAATCACATAG

Position: -251 Score: 4.6 Sequence: ATTTATGAGATAAATCACACAA Position: -249 Score: 4.1 Sequence: TTATGAGATAAATCACACAATT Locus tag: plu2275
	plu2275	-251	4.6	ATTTATGAGATAAATCACACAA
		-249	4.1	TTATGAGATAAATCACACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylA
Ortholog function: Xylose isomerase (EC 5.3.1.5)
Escherichia coli str. K-12 substr. MG1655	b3565	-224	3.9	ATTTATGACCGAGATCTTACTT
		-134	4.2	TTTTGCGAGCGAGCGCACACTT
Salmonella typhimurium LT2	STM3661	-260	3.9	TTATGCGAAATTCATCACAGCA
		-133	4.4	TTTTGAGAGCCAGAGCACATTT
Citrobacter koseri ATCC BAA-895	CKO_05021	-214	4.1	AATTATGACCGAGATCGTACTT
		-122	4.2	TTTTGCGAGGCGGCGCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03929	-234	4.1	TTTTGCGAGCTGGCGCACGTTT
Enterobacter sp. 638	Ent638_0156	-231	3.8	ATTTATGACCGTGATCTGATTT
		-135	3.9	TTTTGGGAGCCAGCGCACGTTT
Yersinia pestis KIM	y4057	-220	4.6	TTATGAGATCTACACCACAATT
Serratia proteamaculans 568	Spro_0098	-222	3.9	TTTTATGATGGCGGTCATGCTT
		-129	4.6	TTATGAGATCTGTCGCACATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0097	-223	4.7	TTTTTTGATGCGGGTCATATTT
		-135	4.4	TTTTGCGACACAGCGCACATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2275	-251	4.6	ATTTATGAGATAAATCACACAA

Position: -164 Score: 4.3 Sequence: AACTTTGATTTGGATCAAGTTA Position: -39 Score: 3.8 Sequence: TATTTTGATTGACTTTAAATCA Locus tag: plu2478
	plu2478	-164	4.3	AACTTTGATTTGGATCAAGTTA
		-39	3.8	TATTTTGATTGACTTTAAATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W
Escherichia coli str. K-12 substr. MG1655	b1256	-166	4.9	AAAATTGATTTAAATCACATTA
		-82	3.8	TAATGTGATCTATGTAGGATCA
Salmonella typhimurium LT2	STM1732	-82	4.2	AAATGTGATCTGTATTAGATCA
Citrobacter koseri ATCC BAA-895	CKO_01333	-82	3.9	TAATGTGATCTGTATTGGATCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01248	-101	3.9	CATTGCGATCGGTAGCAAAAAT
		-45	4	TAGTGTGATCTAAAACAGATCA
Enterobacter sp. 638	Ent638_2283	-121	3.7	AAAATTAATCTGGATCAACAAA
Yersinia pestis KIM	y2044	-69	3.9	AGATGTGATCTCGATTAGATCA
Serratia proteamaculans 568	Spro_2674	-135	3.8	TTTTTTGATTCAGATCAATCCT
Edwardsiella tarda EIB202	ETAE_1528	-161	3.9	CTGATTGATGTCTATCAAATTT
Proteus mirabilis HI4320	PMI1350	-168	4.6	AAATTTGATGTGGATCAATTAT
		-85	3.8	AGTTGTGATCGGCATTAGATCA
Photorhabdus luminescens subsp. laumondii TTO1	plu2478	-164	4.3	AACTTTGATTTGGATCAAGTTA
		-39	3.8	TATTTTGATTGACTTTAAATCA

Position: -295 Score: 4.9 Sequence: TATATTGATCTTAATCACATAA Locus tag: plu2495
	plu2495	-295	4.9	TATATTGATCTTAATCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ychE
Ortholog function: putative channel protein
Escherichia coli str. K-12 substr. MG1655	b1242	-257	5.1	TTACGTGATCCAAATCAAATTT
Salmonella typhimurium LT2	STM1748	-256	4.8	TTGTGTGATCTAAATCAAGATT
Citrobacter koseri ATCC BAA-895	CKO_01319	-167	5	TTGCGTGATCCAGATCAAATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02198	-261	4.8	TTACGTGATTTAGATCAAGTAT
Enterobacter sp. 638	Ent638_2303	-256	4	AAACATGATCTGAATCAATTTA
Erwinia amylovora ATCC 49946	EAM_1899	-158	3.8	AAAGATGATGCAGATCATCAAT
Serratia proteamaculans 568	Spro_2703	-268	5.2	TTTTGTGATTTAAATCATAAAA
Proteus mirabilis HI4320	PMI1485	-290	5.3	TAAAGTGATCTACATCACAATA
Photorhabdus luminescens subsp. laumondii TTO1	plu2495	-295	4.9	TATATTGATCTTAATCACATAA

Position: -138 Score: 4.6 Sequence: TTATGTGATTAAGATCAATATA Locus tag: plu2496
	plu2496	-138	4.6	TTATGTGATTAAGATCAATATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Escherichia coli str. K-12 substr. MG1655	b1241	-241	5	AAATTTGATTTGGATCACGTAA
Salmonella typhimurium LT2	STM1749	-242	4.9	AATCTTGATTTAGATCACACAA
Citrobacter koseri ATCC BAA-895	CKO_01318	-242	4.9	AAATTTGATCTGGATCACGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02199	-237	4.7	ATACTTGATCTAAATCACGTAA
Enterobacter sp. 638	Ent638_2304	-253	4.1	TAAATTGATTCAGATCATGTTT
Erwinia amylovora ATCC 49946	EAM_1900	-223	3.9	ATTGATGATCTGCATCATCTTT
Yersinia pestis KIM	y2023	-286	5.3	TTTTGTGATTTAAATCACGAAA
Serratia proteamaculans 568	Spro_2704	-278	5.1	TTTTATGATTTAAATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2326	-315	4.5	AAGTTCGATGTTGATCACAAAA
Edwardsiella tarda EIB202	ETAE_1508	-265	5	TTTCGTGACCTTAATCACAAAA
Proteus mirabilis HI4320	PMI1486	-246	5.4	TATTGTGATGTAGATCACTTTA
		-187	3.7	AAAGGAGATCTTTTTAAAATAT
Photorhabdus luminescens subsp. laumondii TTO1	plu2496	-237	3.7	TATTTTTATTAGATTAAAAATT
		-138	4.6	TTATGTGATTAAGATCAATATA

Position: -157 Score: 4.1 Sequence: TGGTGTGATGGTGGTCATGAAT Locus tag: plu2497
	plu2497	-157	4.1	TGGTGTGATGGTGGTCATGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tdk
Ortholog function: Thymidine kinase (EC 2.7.1.21)
Yersinia pestis KIM	y2145	-208	4.9	TATTGTGAGATTGCTCATATAA
Serratia proteamaculans 568	Spro_2705	-203	4.3	AAATGTGATGTCAGACAGAAAT
Edwardsiella tarda EIB202	ETAE_1506	-206	4	AACTGTTAGGTCGATCACTTAT
Photorhabdus luminescens subsp. laumondii TTO1	plu2497	-157	4.1	TGGTGTGATGGTGGTCATGAAT

Position: -147 Score: 3.8 Sequence: ATAAATAATATAAATCAAATAA Locus tag: plu2507
	plu2507	-147	3.8	ATAAATAATATAAATCAAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygbJ
Ortholog function: D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)
Escherichia coli str. K-12 substr. MG1655	b2736	-90	4.9	TTATGTGAATCAGATCACCATA
Salmonella typhimurium LT2	STM2918	-90	4	TTTTGTGAAACAACTCACCGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01605	-91	5	ATTCGTGATAACTCTCACATAT
Erwinia amylovora ATCC 49946	EAM_1106	-90	4.4	TGATGTGAAGTTTATCACTAAT
Serratia proteamaculans 568	Spro_1492	-92	4.1	AATTGTGACAACGATCGCTGAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4327	-92	4.5	TTATGTGATAAAAATCACCACA
Edwardsiella tarda EIB202	ETAE_1922	-93	3.9	ATTTGTGAGGATAAACACGGTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2507	-147	3.8	ATAAATAATATAAATCAAATAA
		-90	3.7	GAATGTGATAACCATCGTGTAT

Position: -267 Score: 4.6 Sequence: ATATGCGAGTCACATCACAATA Locus tag: plu2557
	plu2557	-267	4.6	ATATGCGAGTCACATCACAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: msrB
Ortholog function: methionine sulfoxide reductase B
Escherichia coli str. K-12 substr. MG1655	b1778	-137	5.2	AAATGTGATTTTCATCACGATT
Salmonella typhimurium LT2	STM1291	-107	4.7	TAATGTGACATCAGTCACGATT
Citrobacter koseri ATCC BAA-895	CKO_01799	-107	4.9	AAACGTGATTCCGATCACGATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01198	-135	5.1	AAACGTGATTTAAGTCACAATT
Enterobacter sp. 638	Ent638_1676	-137	5.2	ATATGTGAGAAAGATCACAATT
Erwinia amylovora ATCC 49946	EAM_1930	-137	5.2	AATGGTGATCTGCATCACAATT
Yersinia pestis KIM	y2164	-85	5.1	ATTTGCGATTTTTATCACATTT
Serratia proteamaculans 568	Spro_2727	-143	5.7	ATATGTGATCGGTATCACATAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2343	-135	5.6	TTATGTGATACACATCACAATT
Edwardsiella tarda EIB202	ETAE_1484	-91	4.9	GTTTGTGATGCTCATCACAAAA
Proteus mirabilis HI4320	PMI1503	-137	5.3	TTATGTGAAATGTATCACATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2557	-267	4.6	ATATGCGAGTCACATCACAATA

Position: -224 Score: 5.4 Sequence: TATTGTGATGTGACTCGCATAT Locus tag: plu2558
	plu2558	-224	5.4	TATTGTGATGTGACTCGCATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gapA
Ortholog function: glyceraldehyde-3-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655	b1779	-226	5.3	AATCGTGATGAAAATCACATTT
Salmonella typhimurium LT2	STM1290	-226	4.8	AATCGTGACTGATGTCACATTA
Citrobacter koseri ATCC BAA-895	CKO_01800	-226	5	AATCGTGATCGGAATCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01197	-225	5.2	AATTGTGACTTAAATCACGTTT
Enterobacter sp. 638	Ent638_1675	-225	5.7	AATTGTGATCTTTCTCACATAT
Erwinia amylovora ATCC 49946	EAM_1931	-215	5.4	AATTGTGATGCAGATCACCATT
Yersinia pestis KIM	y2165	-218	5.1	AAATGTGATAAAAATCGCAAAT
Serratia proteamaculans 568	Spro_2728	-227	5.6	ATATGTGATACCGATCACATAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2344	-235	5.8	AATTGTGATGTGTATCACATAA
Edwardsiella tarda EIB202	ETAE_1483	-227	5.1	TTTTGTGATGAGCATCACAAAC
Proteus mirabilis HI4320	PMI1504	-226	5.6	AAATGTGATACATTTCACATAA
Photorhabdus luminescens subsp. laumondii TTO1	plu2558	-224	5.4	TATTGTGATGTGACTCGCATAT

Position: -114 Score: 5.4 Sequence: AATTGTGATCTAAATCATAAAT Locus tag: plu2561
	plu2561	-114	5.4	AATTGTGATCTAAATCATAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dadA
Ortholog function: D-amino acid dehydrogenase small subunit
Escherichia coli str. K-12 substr. MG1655	b1189	-116	4.7	AGATGTGAGCCAGCTCACCATA
Salmonella typhimurium LT2	STM1803	-107	4.6	ATATGTGAAGCACGTCACCATA
Citrobacter koseri ATCC BAA-895	CKO_01193	-107	4.5	AGATGTGAGGTGCGTCACCATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02309	-106	4.1	TGCTGTGAGTTAAGTCACCATA
Enterobacter sp. 638	Ent638_2363	-107	4.3	AGGTGTGAGGTAAGTCACCATA
Serratia proteamaculans 568	Spro_2746	-113	4.6	AATTGTGAATGTTGTCACGTTT
Proteus mirabilis HI4320	PMI1509	-121	4.7	AAATGTGATTTGACTCTAAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu2561	-114	5.4	AATTGTGATCTAAATCATAAAT

Position: -62 Score: 3.8 Sequence: TATTGTAATTTCCATTATCTAT Locus tag: plu2630
	plu2630	-62	3.8	TATTGTAATTTCCATTATCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroH
Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase
Escherichia coli str. K-12 substr. MG1655	b1704	-106	4.3	AGGTGTGACACACCTCGCACTT
		-64	4	TATCGTGATGCGCATCACTTCC
Salmonella typhimurium LT2	STM1347	-106	4.3	AGGTGTGACACGCCTCGCACTT
		-64	4	TATCGTGATGCCCATCACTTCC
Citrobacter koseri ATCC BAA-895	CKO_01728	-115	4.3	AGGTGTGAAACGCCTCGCATTT
		-64	4.3	TATTGTGATGCCCATCACTTCC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02162	-63	4	TATCGTGATGCGCATCACTTCC
Enterobacter sp. 638	Ent638_1743	-126	3.6	AGTTATGATCGCTTTCACTCTC
		-62	3.6	TAAGGTGATGCCCATCACTTCC
Yersinia pestis KIM	y1928	-64	4.3	TATTGTGATCGCCATCACTTCC
Serratia proteamaculans 568	Spro_2172	-135	3.9	TTTTGTGCTTTTTTTAGCGATT
		-64	4.3	TATTGTGATCGCCATCACTTCC
Edwardsiella tarda EIB202	ETAE_1792	-63	4	TATCGTGATCCCCATCACTTCC
Proteus mirabilis HI4320	PMI1423	-55	3.9	TATTGTGATCTTAATCACTGGG
Photorhabdus luminescens subsp. laumondii TTO1	plu2630	-62	3.8	TATTGTAATTTCCATTATCTAT

Position: -281 Score: 3.9 Sequence: TATTGTGCTATCTTTTAAATTG Position: -179 Score: 3.7 Sequence: AAACGTGGTGCGGGTAACCTTA Locus tag: plu2701
	plu2701	-281	3.9	TATTGTGCTATCTTTTAAATTG
		-179	3.7	AAACGTGGTGCGGGTAACCTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: b1821
Ortholog function: hypothetical protein
Salmonella typhimurium LT2	STM1834	-276	3.7	AATTGTTATTTAATTTAACGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2389	-267	3.8	TAGTGTTGTTTGCATCATAAAT
Proteus mirabilis HI4320	PMI1608	-272	3.8	AATTATTATCAATATCATCTTT
		-237	3.9	TAATATGTTGCCTTTCATAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu2701	-281	3.9	TATTGTGCTATCTTTTAAATTG
		-179	3.7	AAACGTGGTGCGGGTAACCTTA

Position: -74 Score: 4 Sequence: TGTTATGATTTGACACACAGTA Locus tag: plu2719
	plu2719	-74	4	TGTTATGATTTGACACACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: maeB
Ortholog function: malic enzyme
Escherichia coli str. K-12 substr. MG1655	b2463	-257	3.9	ATGAGTGCGTTAATTCACACTT
Salmonella typhimurium LT2	STM2472	-240	3.8	ATGAGTGTGTTGATTCACACTT
Enterobacter sp. 638	Ent638_2958	-231	4.1	ATACATGACGTACTTAACAAAA
Yersinia pestis KIM	y1449	-92	3.7	GATTGTGATAAATCACTCACTA
Serratia proteamaculans 568	Spro_3472	-209	3.6	CTTTGTTATCAAACTCACTATC
		-90	4.1	GTTTGTGACGTTTCTCTCACTA
Photorhabdus luminescens subsp. laumondii TTO1	plu2719	-74	4	TGTTATGATTTGACACACAGTA

Position: -154 Score: 3.8 Sequence: GAATTTGATGTTGTTCAATTTT Locus tag: plu2821
	plu2821	-154	3.8	GAATTTGATGTTGTTCAATTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Escherichia coli str. K-12 substr. MG1655	b1109	-154	3.9	AAACTTGATTAACATCAATTTT
Salmonella typhimurium LT2	STM1211	-154	4.1	AAACTTGATGCACATCAATTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01106	-152	4.1	AAACTTGATGCACATCAATTTT
Enterobacter sp. 638	Ent638_1624	-153	4	AAACTTGATTCATATCAATTTT
Erwinia amylovora ATCC 49946	EAM_1473	-55	3.7	TAAGGTTATTTTATTAACCTTT
Yersinia pestis KIM	y1777	-152	3.8	AAAGTTGATATATATCAATTTT
Serratia proteamaculans 568	Spro_1926	-153	4.3	AAGTTTGATGTACATCAATTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1815	-153	4	TAAATTGATATATATCAATTTT
Edwardsiella tarda EIB202	ETAE_2070	-166	4.3	TTATTTGATTTGAATCAATTTT
Proteus mirabilis HI4320	PMI0875	-157	4.6	TTTTTTGATATAAATCAACTTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2821	-154	3.8	GAATTTGATGTTGTTCAATTTT

Position: -72 Score: 3.7 Sequence: TTTAGTGATATAAATAGAACTG Locus tag: plu2858
	plu2858	-72	3.7	TTTAGTGATATAAATAGAACTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: fruK
Ortholog function: 1-phosphofructokinase
Escherichia coli str. K-12 substr. MG1655	b2168	-178	4.3	AATTGTGCAGCACATCAAACTT
Salmonella typhimurium LT2	STM2205	-177	4.6	AAATGTGCTTCACCTCAAAAAA
Citrobacter koseri ATCC BAA-895	CKO_00614	-50	4.1	AAGTGTGCTTTATCTCTAAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02599	-177	3.5	AAGTGTGCAGTACCTCTAAGTT
Enterobacter sp. 638	Ent638_2762	-178	4.3	AAATGTGCTGCACTTCTAAATT
Erwinia amylovora ATCC 49946	EAM_2222	-179	4.4	AAATGTGCTGGCTGTCAAAAAT
Yersinia pestis KIM	y2886	-178	4.1	AAATGTGCGGAATGTCAAAAAT
Serratia proteamaculans 568	Spro_3229	-177	4	AAGTGTGCGTGAGGTCAAAAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2728	-180	4.1	AAATGTGCGTGATGTCAAAATT
Edwardsiella tarda EIB202	ETAE_2302	-199	4.1	AAATGTGCTGAAGGTCTAAAAT
Proteus mirabilis HI4320	PMI2157	-254	4.6	AAACGTGATTTAGATCTAACTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2858	-72	3.7	TTTAGTGATATAAATAGAACTG

Position: -185 Score: 4.1 Sequence: AAATGAGAGATTGATCTCACTT Position: -183 Score: 3.6 Sequence: ATGAGAGATTGATCTCACTTTT Position: -141 Score: 3.8 Sequence: TAATGTAATACTATAAACACAA Locus tag: plu2865
	plu2865	-185	4.1	AAATGAGAGATTGATCTCACTT
		-183	3.6	ATGAGAGATTGATCTCACTTTT
		-141	3.8	TAATGTAATACTATAAACACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yejG
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b2181	-158	3.7	AAACGTGACCACGCCCGCAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02614	-204	3.8	AAAGTTGTTTTGGATCACAGAA
Erwinia amylovora ATCC 49946	EAM_2233	-177	3.6	AAATGAGCATTACTTCTCAAAA
Yersinia pestis KIM	y2914	-238	4.4	AAATGGGATCTGAATCCCAAAT
Serratia proteamaculans 568	Spro_3250	-214	4.2	AAATGCGAGCTGAGTCGCAAAA
		-121	4.1	GCTTGTGATGTTTTTTACATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2740	-178	4	ATTCGTGATCAGTTTGGCATTA
		-101	3.8	TGTTGTTTTTTTGTTCACGAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu2865	-185	4.1	AAATGAGAGATTGATCTCACTT
		-183	3.6	ATGAGAGATTGATCTCACTTTT
		-141	3.8	TAATGTAATACTATAAACACAA

Position: -121 Score: 3.6 Sequence: TAGCATGATGTTAATCATTTAA Locus tag: plu3095
	plu3095	-121	3.6	TAGCATGATGTTAATCATTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: acetate kinase
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02687	-95	3.8	AGGCATGATGTTAATCATAAAT
Enterobacter sp. 638	Ent638_2840	-96	3.8	TGGCATGATGTTAATCATAAAT
Serratia proteamaculans 568	Spro_3316	-125	3.8	TCACATGATGTTAATCATAAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3039	-95	4.2	AGGTATGATGTTAATCATAAAT
Proteus mirabilis HI4320	PMI1771	-123	3.6	AAGCATGATGCGTATCATTAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu3095	-121	3.6	TAGCATGATGTTAATCATTTAA

Position: -66 Score: 3.8 Sequence: AAAGATGATGCGGAGCATATTA Locus tag: plu3110
	plu3110	-66	3.8	AAAGATGATGCGGAGCATATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: astC
Ortholog function: bifunctional succinylornithine transaminase/acetylornithine transaminase
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01493	-274	4	TATCTTGATGATCTTCAAAAAG
Photorhabdus luminescens subsp. laumondii TTO1	plu3110	-66	3.8	AAAGATGATGCGGAGCATATTA

Position: -137 Score: 4.3 Sequence: AATTGTGATCTTGGCAATATTT Locus tag: plu3142
	plu3142	-137	4.3	AATTGTGATCTTGGCAATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lsrR
Ortholog function: LsrR, transcriptional repressor of lsr operon
Escherichia coli str. K-12 substr. MG1655	b1512	-87	4.1	AACTGTGGTTGCCATCACAGAT
Salmonella typhimurium LT2	STM4073	-161	3.6	AACTCTCATCCAGATCACGTTT
		-92	4	TTTTGTGGCGTTAATCACGGTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03508	-75	3.7	TTTTGCCAGTCGGCTCACACTT
Enterobacter sp. 638	Ent638_3537	-122	3.4	TTTATTGATTAGGATCCAATTC
Photorhabdus luminescens subsp. laumondii TTO1	plu3142	-137	4.3	AATTGTGATCTTGGCAATATTT

Position: -203 Score: 4.7 Sequence: ATTTGTGATTATAAACACAAAA Locus tag: plu3193
	plu3193	-203	4.7	ATTTGTGATTATAAACACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hutU
Ortholog function: urocanate hydratase
Citrobacter koseri ATCC BAA-895	CKO_02357	-123	3.8	AAGCGTGATTGCTGACGCAATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00795	-124	4	AAACGTGATTGCTGACGCAATA
Enterobacter sp. 638	Ent638_1263	-120	4	AAGCGTGATAGCTAACGCAATA
Erwinia amylovora ATCC 49946	EAM_1253	-121	3.8	TTTTGTGACAAAGCTGGCACAA
Yersinia pestis KIM	y4038	-261	4.9	ATATGTGATTTGGTGCGCAAAT
Serratia proteamaculans 568	Spro_0805	-196	4.8	TATTGTGATTTGACGCGCAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu3193	-203	4.7	ATTTGTGATTATAAACACAAAA

Position: -185 Score: 4 Sequence: TTTTGTTAACTGAGTCGCGTTT Locus tag: plu3202
	plu3202	-185	4	TTTTGTTAACTGAGTCGCGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadL
Ortholog function: Long-chain fatty acid transport protein
Escherichia coli str. K-12 substr. MG1655	b2344	-269	4.8	ATAAGTGACCGAAATCACACTT
		-247	3.9	AAAAATGATCTAAAACAAAATT
Salmonella typhimurium LT2	STM2391	-262	4.8	TTAAGTGACCGAAATCACACTT
		-240	3.9	AAAAATGATCTAAAACAAAAAT
Citrobacter koseri ATCC BAA-895	CKO_00446	-263	4.8	ATAAGTGACCGAAATCACACTT
		-241	3.9	AAAAATGATCTAAAACAAAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02726	-264	4.7	TTAAGTGACAGAAATCACACTT
		-242	3.9	AAAAATGATCTAAAACAAAAAT
Enterobacter sp. 638	Ent638_2884	-269	4.2	GTAAGTGACCGATATCACACTA
		-247	4	AAAAATGATCTAGCGCAAAAAT
		-214	3.7	ATGAGTGCGACGGCTCGCATTT
Erwinia amylovora ATCC 49946	EAM_2348	-194	3.9	TTTTGTTAAGCAGATCTCTTTT
Serratia proteamaculans 568	Spro_3381	-271	5.1	TTAAGTGATGGAAATCACAAAT
		-196	3.8	TTTTGTTAGCCAGATCTCTCTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3081	-332	3.8	AATTTTTATCTTCCTTATATTT
		-262	4.9	TTTAGTGATATCAGTCACATTA
Proteus mirabilis HI4320	PMI1810	-326	3.7	AAGTGTTAATTATCTATCATAA
		-186	4.2	TAATGTTAACTAAATCCCAAAT

Position: -176 Score: 4.9 Sequence: TTATGTGATCTATATCTTAAAA Locus tag: plu3205
	plu3205	-176	4.9	TTATGTGATCTATATCTTAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dctA
Ortholog function: C4-dicarboxylate transport protein
Escherichia coli str. K-12 substr. MG1655	b3528	-143	4.1	TTGTGCGAGCCAGCTCAAACTT
Salmonella typhimurium LT2	STM3614	-145	4.1	TTGTGCGAGCCAGCTCAAACTT
Citrobacter koseri ATCC BAA-895	CKO_04970	-145	4	TTGTGCGAGCCAGCTCAAAGTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03878	-143	3.9	TTGTGCGAGTCAGCTCAAAGAT
Erwinia amylovora ATCC 49946	EAM_3380	-134	4.4	TGAAGTGATTCAGCTCATAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4362	-157	3.8	TGACGTGATTCAGCTCTTGTTT
Edwardsiella tarda EIB202	ETAE_3379	-155	3.6	TTATGCGTTTCAGCTCATAGAA
Photorhabdus luminescens subsp. laumondii TTO1	plu3205	-176	4.9	TTATGTGATCTATATCTTAAAA

Position: -127 Score: 4.3 Sequence: CAATGTGATCTTCAACCCATTT Locus tag: plu3288
	plu3288	-127	4.3	CAATGTGATCTTCAACCCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: treB
Ortholog function: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655	b4240	-101	3.8	AATTGTGATCTTCGCTGCGTTT
Citrobacter koseri ATCC BAA-895	CKO_03571	-156	3.8	ATTTGTGATCTTCGCTGCGTTT
Enterobacter sp. 638	Ent638_0439	-106	4	TATTGTGATCTTCACCCGATTT
Serratia proteamaculans 568	Spro_0529	-124	3.8	TTTTGTGATCCTCGCCCCAAAC
Photorhabdus luminescens subsp. laumondii TTO1	plu3288	-127	4.3	CAATGTGATCTTCAACCCATTT

Position: -178 Score: 3.8 Sequence: TAGCGTAATTTTCATTACACTA Locus tag: plu3291
	plu3291	-178	3.8	TAGCGTAATTTTCATTACACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glyA
Ortholog function: serine hydroxymethyltransferase
Escherichia coli str. K-12 substr. MG1655	b2551	-229	3.8	GAATGTGATGAAGTGAAAAATT
Proteus mirabilis HI4320	PMI1867	-210	3.8	TAGCGAGATGTGCCTCAAAAAG
Photorhabdus luminescens subsp. laumondii TTO1	plu3291	-178	3.8	TAGCGTAATTTTCATTACACTA

Position: -129 Score: 3.6 Sequence: TAATTTAAAAACAATCATATAT Locus tag: plu3542
	plu3542	-129	3.6	TAATTTAAAAACAATCATATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: prpB
Ortholog function: Methylisocitrate lyase (EC 4.1.3.30)
Escherichia coli str. K-12 substr. MG1655	b0331	-153	3.7	AAACGTTAACTGAAACGCATAT
Salmonella typhimurium LT2	STM0368	-197	3.5	CAGGGTGATTCGTTTCATGAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu3542	-129	3.6	TAATTTAAAAACAATCATATAT

Position: -225 Score: 4 Sequence: ATATATGATTGTTTTTAAATTA Locus tag: plu3543
	plu3543	-225	4	ATATATGATTGTTTTTAAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: prpR
Ortholog function: Propionate catabolism operon regulatory protein PrpR
Escherichia coli str. K-12 substr. MG1655	b0330	-107	3.7	ATATGCGTTTCAGTTAACGTTT
Salmonella typhimurium LT2	STM0367	-89	3.5	TTTCATGAAACGAATCACCCTG
Citrobacter koseri ATCC BAA-895	CKO_02831	-179	3.4	AATTTTGTTTTTTCTTATAATT
Photorhabdus luminescens subsp. laumondii TTO1	plu3543	-225	4	ATATATGATTGTTTTTAAATTA

Position: -207 Score: 4.4 Sequence: TTTAGTGATATATTTCATATCT Position: -178 Score: 4.2 Sequence: TTATTTGATCTAAATCCTAATT Position: -105 Score: 4.4 Sequence: TTATGTGATGGGAATAGCAATC Locus tag: plu3605
	plu3605	-207	4.4	TTTAGTGATATATTTCATATCT
		-178	4.2	TTATTTGATCTAAATCCTAATT
		-105	4.4	TTATGTGATGGGAATAGCAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: serA
Ortholog function: D-3-phosphoglycerate dehydrogenase
Escherichia coli str. K-12 substr. MG1655	b2913	-210	4.1	TTTGGTGACATGTGTCACGCTT
Salmonella typhimurium LT2	STM3062	-217	4.5	TTTGGTGACATGTATCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03348	-214	4.6	TTTGGTGACTTCTGTCACATTT
Enterobacter sp. 638	Ent638_3332	-215	4.1	TTCGGTGACTTGTATCACGTTT
Yersinia pestis KIM	y3301	-126	4.8	TTTGGTGATATATATCACATTC
Serratia proteamaculans 568	Spro_3923	-215	4.4	TTTGGTGACATATGTCACATTG
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3905	-214	3.9	TTTGGTACTTAATATCACATTT
Proteus mirabilis HI4320	PMI2031	-210	4	TTCAGTGATATATATCACACGA
Photorhabdus luminescens subsp. laumondii TTO1	plu3605	-207	4.4	TTTAGTGATATATTTCATATCT
		-178	4.2	TTATTTGATCTAAATCCTAATT
		-105	4.4	TTATGTGATGGGAATAGCAATC

Position: -41 Score: 3.6 Sequence: CATAGTGATATTCAGAAAAATA Locus tag: plu3610
	plu3610	-41	3.6	CATAGTGATATTCAGAAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: iciA
Ortholog function: chromosome replication initiation inhibitor protein
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03350	-107	3.8	CCCTGCGATGCAGATCACACAA
Enterobacter sp. 638	Ent638_3334	-126	3.9	CCCTGTGACCGGTGTCACATTA
		-48	3.7	ATTTGTGTCATAGTGCAGAATA
Yersinia pestis KIM	y3303	-249	3.7	TAATTCTAGCGAGATCACAGTT
Edwardsiella tarda EIB202	ETAE_2951	-48	3.8	TAACGTTTTATACATAACAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu3610	-41	3.6	CATAGTGATATTCAGAAAAATA

Position: -131 Score: 3.9 Sequence: TGTTGCGAGTTCTGTCACGTTA Locus tag: plu3621
	plu3621	-131	3.9	TGTTGCGAGTTCTGTCACGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lpdA
Ortholog function: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Escherichia coli str. K-12 substr. MG1655	b0116	-224	3.3	AATTGTTAACAATTTTGTAAAA
Salmonella typhimurium LT2	STM0154	-153	3.5	GTTTGTGAGGTTATTAGCGAAA
Citrobacter koseri ATCC BAA-895	CKO_03256	-95	3.3	AATTGTTAACAATTTTGTAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00120	-105	3.3	AATTGTTAACAATTTTGTAAAA
Yersinia pestis KIM	y0769	-253	3.3	ATTGGTGATCTTGTTATTACTG
Serratia proteamaculans 568	Spro_4009	-246	3.6	TATGGTGATGTAATGAAAAAAG
Proteus mirabilis HI4320	PMI2044	-133	3.4	GGTTGTGAGATCTGTCATGTTA
Photorhabdus luminescens subsp. laumondii TTO1	plu3621	-131	3.9	TGTTGCGAGTTCTGTCACGTTA

Position: -42 Score: 3.2 Sequence: CTTCATTCTCTATATCGCAATA Position: 17 Score: 3.3 Sequence: TACTTTAATGGAGATCATGGTT Locus tag: plu3638
	plu3638	-42	3.2	CTTCATTCTCTATATCGCAATA
		17	3.3	TACTTTAATGGAGATCATGGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppdD
Ortholog function: predicted major pilin subunit
Escherichia coli str. K-12 substr. MG1655	b0108	-145	3.2	CTTCGTAACGCCTCGCAAATTT
Citrobacter koseri ATCC BAA-895	CKO_03268	-146	3.4	TTTTTCGAGCGGCCTCGCAAAC
Yersinia pestis KIM	y0761	-123	3.8	TTACGTTATTGCAATAACCTAA
Proteus mirabilis HI4320	PMI2049	-146	4.3	TAATGCGAACTTGCTCTCAATA

Position: -44 Score: 3.3 Sequence: AAAGATGACGGGTATATCAATA Locus tag: plu3639
	plu3639	-44	3.3	AAAGATGACGGGTATATCAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pulE
Ortholog function: conserved protein with nucleoside triphosphate hydrolase domain
Escherichia coli str. K-12 substr. MG1655	b0107	-145	3.2	CTTCGTAACGCCTCGCAAATTT
Citrobacter koseri ATCC BAA-895	CKO_03269	-146	3.4	TTTTTCGAGCGGCCTCGCAAAC
Yersinia pestis KIM	y0760	-123	3.8	TTACGTTATTGCAATAACCTAA
Proteus mirabilis HI4320	PMI2050	-146	4.3	TAATGCGAACTTGCTCTCAATA
Photorhabdus luminescens subsp. laumondii TTO1	plu3639	-227	4.1	AAATGTGAATCGACAAACAATT
		-182	3.2	ATATTTGAATTTTAATTCATTA

Position: -205 Score: 3.3 Sequence: GTTTATACTCGCAATCACATAA Locus tag: plu3683
	plu3683	-205	3.3	GTTTATACTCGCAATCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: metK
Ortholog function: S-adenosylmethionine synthetase (EC 2.5.1.6)
Escherichia coli str. K-12 substr. MG1655	b2942	-200	3.6	GAATGAGACACGATTCAAAAAA
Salmonella typhimurium LT2	STM3090	-200	3.9	CATTGCGACGGCCTTCAAAAAA
Citrobacter koseri ATCC BAA-895	CKO_04317	-199	3.5	CAACGAGAGTTGATTCAAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03375	-199	4.3	AAATGCGACCGCCATCAAAAAA
Enterobacter sp. 638	Ent638_3346	-199	4.4	TAATGCGAGCGATATCAAAAAA
Proteus mirabilis HI4320	PMI2095	-275	3.5	CACTGTGATTCAGTTTTCACAG
Photorhabdus luminescens subsp. laumondii TTO1	plu3683	-205	3.3	GTTTATACTCGCAATCACATAA

Position: -222 Score: 3.5 Sequence: AATAGTGAATTTTTTCAATAAG Locus tag: plu3866
	plu3866	-222	3.5	AATAGTGAATTTTTTCAATAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: hupB
Ortholog function: HU, DNA-binding transcriptional regulator, beta subunit
Proteus mirabilis HI4320	PMI0118	-216	4.9	AATCGTGATGTGAATCATAATA
Photorhabdus luminescens subsp. laumondii TTO1	plu3866	-222	3.5	AATAGTGAATTTTTTCAATAAG

Position: -9 Score: 4 Sequence: AGGTGTGAAATGGTTAACAATG Locus tag: plu3927
	plu3927	-9	4	AGGTGTGAAATGGTTAACAATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: cpdB
Ortholog function: 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor
Escherichia coli str. K-12 substr. MG1655	b4213	-118	3.8	AACTGTGATAGTGTCATCATTT
		-85	3.8	AATTGTGGCATTCTTCACTGTT
Salmonella typhimurium LT2	STM4403	-145	3.7	TTCTGTGAACACTCGCAAAAAA
Citrobacter koseri ATCC BAA-895	CKO_03616	-25	4.2	TTTTGTGTTTCAGATCTAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04607	-156	3.8	TTGTTTTATTTATATCGCATCA
		-87	3.7	TTTTCTGGCAAGATTCACATTT
		-35	4.2	TTCTGTGCTATCGCTCATAAAA
Enterobacter sp. 638	Ent638_0392	-34	4	TTTTGTGGCTTGGATCGAAAAA
Yersinia pestis KIM	y0653	-148	3.6	AACTGTGAGCGTCTACGCGTTA
		-116	3.8	TTTTCTGCCAAACTTCACACTT
		-63	4.4	TTTTGCGATACATATCGAATAT
Serratia proteamaculans 568	Spro_0453	-95	3.8	TTTTCTGCCACACTTCACAGTT

Position: -161 Score: 4.3 Sequence: TTTCATGACCTTCATCACATTC Locus tag: plu3990
	plu3990	-161	4.3	TTTCATGACCTTCATCACATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadH
Ortholog function: 2,4-dienoyl-CoA reductase [NADPH] (2,4-dienoyl coenzyme A reductase)
Escherichia coli str. K-12 substr. MG1655	b3081	-112	3.9	CTTTTTGAATCCCATCACAAAC
Salmonella typhimurium LT2	STM3219	-113	4.3	TTTTTTGAATCCCATCACAATC
Citrobacter koseri ATCC BAA-895	CKO_04487	-113	4.3	TTTTTTGAATCCCATCACAATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03510	-111	3.9	TTCTTTGAATCCCATCACAATC
Enterobacter sp. 638	Ent638_3539	-111	3.9	ATCTTTGAATCCCATCACATTC
Erwinia amylovora ATCC 49946	EAM_0507	-169	3.8	AACCGTGACTGAGATCGCTAAA
Yersinia pestis KIM	y3589	-131	4	ATTCATGACGGCTATCACAATC
Serratia proteamaculans 568	Spro_4309	-126	4.2	ATTCATGACATCTATCACATTC
Proteus mirabilis HI4320	PMI3702	-213	3.8	TATTATTATATGATTAAAAAAT
		-103	3.8	TTCCATGATTAAGATCACAACT
Photorhabdus luminescens subsp. laumondii TTO1	plu3990	-161	4.3	TTTCATGACCTTCATCACATTC

Position: -338 Score: 4.6 Sequence: TAACCTGATCTATATCACACAA Position: -241 Score: 4 Sequence: ATATTTGACCTGATTTATATTT Locus tag: plu4009
	plu4009	-338	4.6	TAACCTGATCTATATCACACAA
		-241	4	ATATTTGACCTGATTTATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltB
Ortholog function: glutamate synthase, large subunit
Escherichia coli str. K-12 substr. MG1655	b3212	-199	4.2	AATTTTGCGCTAAAGCACATTT
Salmonella typhimurium LT2	STM3330	-288	3.7	ATCTGTGCTACAGCACACTTTT
Enterobacter sp. 638	Ent638_3656	-298	3.9	GATAGTGAGTCAGATCACACTC
Edwardsiella tarda EIB202	ETAE_0527	-278	4.9	AACTGTGATGCAGCCCACATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4009	-241	4	ATATTTGACCTGATTTATATTT

Position: -127 Score: 3.7 Sequence: GTTCGTGATCATGATCTCTTTA Locus tag: plu4046
	plu4046	-127	3.7	GTTCGTGATCATGATCTCTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rnk
Ortholog function: Regulator of nucleoside diphosphate kinase
Escherichia coli str. K-12 substr. MG1655	b0610	-140	3.8	GAATGTGACGCAAATCACTTCA
Salmonella typhimurium LT2	STM0616	-141	3.8	GAATGTGAACTAAATCACTTCA
Citrobacter koseri ATCC BAA-895	CKO_02549	-141	3.9	GAATGTGAGCTAAATCACTTCA
Enterobacter sp. 638	Ent638_1148	-187	4.1	AAATCTGAGAACGATCACGTTT
		-140	3.8	GAATGTGACATTCATCACTTCA
Serratia proteamaculans 568	Spro_4382	-170	3.7	CTTCGTGATCGGGATCTCTTTC
		-67	3.8	TTTTGTGCTGTTTTTCCGAATT
Edwardsiella tarda EIB202	ETAE_0492	-145	4.4	ATTTGTGAGCCAGCTCTCTTTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4046	-127	3.7	GTTCGTGATCATGATCTCTTTA

Position: -191 Score: 3.7 Sequence: CTAAGTGATAAACTTTACCAAT Locus tag: plu4088
	plu4088	-191	3.7	CTAAGTGATAAACTTTACCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dusB
Ortholog function: tRNA-dihydrouridine synthase B
Escherichia coli str. K-12 substr. MG1655	b3260	-297	4.4	AAGTGCGAGCAAGCTCACAAAA
		-212	4.3	AATTGAGAACTTACTCAAATTT
Citrobacter koseri ATCC BAA-895	CKO_04672	-212	3.7	AAATGAGAAGTTACGCAAAATT
Enterobacter sp. 638	Ent638_3699	-299	4.1	AAATGGGACCCAGATCGCAAAG
Erwinia amylovora ATCC 49946	EAM_3146	-219	4	TATTGTTAACTTGCTCACAAGA
Yersinia pestis KIM	y0213	-57	4.3	TAACGTGATGTTATTTATAATT
Proteus mirabilis HI4320	PMI3623	-94	3.8	TTTCGCGATTTGGTTAAACTTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4088	-191	3.7	CTAAGTGATAAACTTTACCAAT

Position: -250 Score: 4.9 Sequence: TATTGTGACAATTGTCACAATT Locus tag: plu4119
	plu4119	-250	4.9	TATTGTGACAATTGTCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpT
Ortholog function: glycerol-3-phosphate transporter
Escherichia coli str. K-12 substr. MG1655	b2240	-219	3.7	TTGTTTGATTTCGCGCATATTC
		-179	3.6	AAACGTGATTTCATGCGTCATT
		-129	4.6	ATGTGTGCGGCAATTCACATTT
Salmonella typhimurium LT2	STM2283	-220	3.6	ATGTTTGATTTCGCGCATAATC
		-180	4.2	AAACGTGATTTCGTGCGCCTTT
		-131	5.2	ATATGTGCTGTAATTCACATTA
Citrobacter koseri ATCC BAA-895	CKO_00537	-221	3.6	TTGTTTGATTTCGCGCATAATC
		-181	4	AAACGTGATTTCGTGCGCTTTT
		-132	4.8	ATCTGTGCTGTAATTCACATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02646	-218	3.8	TTGTTTGATTTCGAGCATATTC
		-178	4.6	TTATGTGATTTCGTGCTCACAT
		-128	4.5	AATTGTGCGATGTTTCACAGTA
Enterobacter sp. 638	Ent638_2804	-201	3.6	TTGTTTGATTTCGAACATAATC
		-161	3.8	AAGCGTGATCTCATGCGCTTAT
		-111	4	ATCTGTGCGTTGATTCACAGTA
Erwinia amylovora ATCC 49946	EAM_0195	-240	3.7	AAACGCGATGCGGTTAACGATG
		-147	3.7	ATTTGTGCCTCTCTTCACGGTC
Serratia proteamaculans 568	Spro_0199	-249	4.5	GAATGTGATCATAATCACGATT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4166	-253	3.7	ATGTTTGATAAAGAGCAAAAAC
		-193	4.9	AAGTGTGATTTGCATCACTAAA
Edwardsiella tarda EIB202	ETAE_3116	-200	3.7	ATATGAGCGATCTCTCACAGTA
Proteus mirabilis HI4320	PMI3591	-291	3.6	ATGTTTGATAATGAGCAAAAAC
		-232	5.4	ATATGTGATACTAATCACAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu4119	-250	4.9	TATTGTGACAATTGTCACAATT

Position: -167 Score: 3.7 Sequence: AACTGTGATATATCACTGATAA Locus tag: plu4120
	plu4120	-167	3.7	AACTGTGATATATCACTGATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpQ
Ortholog function: glycerophosphoryl diester phosphodiesterase
Escherichia coli str. K-12 substr. MG1655	b2239	-219	3.7	TTGTTTGATTTCGCGCATATTC
		-179	3.6	AAACGTGATTTCATGCGTCATT
		-129	4.6	ATGTGTGCGGCAATTCACATTT
Salmonella typhimurium LT2	STM2282	-220	3.6	ATGTTTGATTTCGCGCATAATC
		-180	4.2	AAACGTGATTTCGTGCGCCTTT
		-131	5.2	ATATGTGCTGTAATTCACATTA
Citrobacter koseri ATCC BAA-895	CKO_00538	-221	3.6	TTGTTTGATTTCGCGCATAATC
		-181	4	AAACGTGATTTCGTGCGCTTTT
		-132	4.8	ATCTGTGCTGTAATTCACATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02645	-218	3.8	TTGTTTGATTTCGAGCATATTC
		-178	4.6	TTATGTGATTTCGTGCTCACAT
		-128	4.5	AATTGTGCGATGTTTCACAGTA
Serratia proteamaculans 568	Spro_0198	-249	4.5	GAATGTGATCATAATCACGATT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4167	-253	3.7	ATGTTTGATAAAGAGCAAAAAC
		-193	4.9	AAGTGTGATTTGCATCACTAAA
Edwardsiella tarda EIB202	ETAE_3117	-200	3.7	ATATGAGCGATCTCTCACAGTA
Proteus mirabilis HI4320	PMI3590	-291	3.6	ATGTTTGATAATGAGCAAAAAC
		-232	5.4	ATATGTGATACTAATCACAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu4120	-250	4.9	TATTGTGACAATTGTCACAATT

Position: -188 Score: 5.6 Sequence: ATATGTGATATTTATCACAATT Position: -125 Score: 3.6 Sequence: AACTGTGACCCCAATTATATCT Locus tag: plu4136
	plu4136	-188	5.6	ATATGTGATATTTATCACAATT
		-125	3.6	AACTGTGACCCCAATTATATCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fxsA
Ortholog function: suppressor of F plamsid exlusion of phage T7
Escherichia coli str. K-12 substr. MG1655	b4140	-202	4.1	TACCGTAATCTGGATCACTTTA
		-152	4.3	ATTTGTGAAATAGATCACCGCT
Salmonella typhimurium LT2	STM4327	-203	4.1	TACCGTAATCTGGATCACTTAA
		-153	4.1	TTTTGTGAAATAGGTCACCGCT
Citrobacter koseri ATCC BAA-895	CKO_03695	-156	4.1	TTTTGTGAAATAGGTCACCGCT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04530	-140	3.7	ATCTGTGAAATGGGTCACCGCT
Enterobacter sp. 638	Ent638_0327	-151	3.8	ATCTGTGAAATGAATCACCGCT
Erwinia amylovora ATCC 49946	EAM_0417	-161	3.9	ATATCTGTTCCAGGTCACATTG
Yersinia pestis KIM	y0607	-245	4.8	ATCTGTGATTGCTCTCACACTT
Serratia proteamaculans 568	Spro_0407	-117	4.9	TTCTGTGATCTCATTCACGTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0623	-245	3.7	AACTGTGATTGTAGTCACGAGT
		-185	3.6	AAATGTGCAAAGGCGCACCCAT
Edwardsiella tarda EIB202	ETAE_0312	-189	4.6	ATCTGTGATAATACTCACAGAT
Proteus mirabilis HI4320	PMI2545	-188	4.7	TTTTGTGATCTATCTCATGGAT
Photorhabdus luminescens subsp. laumondii TTO1	plu4136	-188	5.6	ATATGTGATATTTATCACAATT

Position: -211 Score: 5.6 Sequence: AATTGTGATAAATATCACATAT Locus tag: plu4137
	plu4137	-211	5.6	AATTGTGATAAATATCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aspA
Ortholog function: aspartate ammonia-lyase
Escherichia coli str. K-12 substr. MG1655	b4139	-206	4.5	AGCGGTGATCTATTTCACAAAT
		-156	4.2	TAAAGTGATCCAGATTACGGTA
Salmonella typhimurium LT2	STM4326	-209	4.2	AGCGGTGACCTATTTCACAAAA
		-159	4.2	TTAAGTGATCCAGATTACGGTA
Citrobacter koseri ATCC BAA-895	CKO_03696	-54	4.2	AGCGGTGACCTATTTCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04529	-204	3.9	AGCGGTGACCCATTTCACAGAT
		-154	3.8	ATAAGTGATCAAGCTTACTGAT
Enterobacter sp. 638	Ent638_0326	-205	4.1	AGCGGTGATTCATTTCACAGAT
Erwinia amylovora ATCC 49946	EAM_0416	-228	4.2	CAATGTGACCTGGAACAGATAT
Yersinia pestis KIM	y0606	-224	4.6	AAGTGTGAGAGCAATCACAGAT
Serratia proteamaculans 568	Spro_0406	-205	4.7	AAACGTGAATGAGATCACAGAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0621	-272	4	ACTCGTGACTACAATCACAGTT
Edwardsiella tarda EIB202	ETAE_0311	-197	4.4	ATCTGTGAGTATTATCACAGAT
Proteus mirabilis HI4320	PMI2546	-206	4.1	ATCCATGAGATAGATCACAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu4137	-274	3.8	AGATATAATTGGGGTCACAGTT
		-211	5.6	AATTGTGATAAATATCACATAT

Position: -167 Score: 3.8 Sequence: GATTGTGATTCTGCTTAGATTA Locus tag: plu4248
	plu4248	-167	3.8	GATTGTGATTCTGCTTAGATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: osmY
Ortholog function: Osmotically inducible protein OsmY
Photorhabdus luminescens subsp. laumondii TTO1	plu4248	-167	3.8	GATTGTGATTCTGCTTAGATTA

Position: -205 Score: 3.8 Sequence: TGACGCGATGAGAATCATAAAA Locus tag: plu4379
	plu4379	-205	3.8	TGACGCGATGAGAATCATAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pgi
Ortholog function: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Salmonella typhimurium LT2	STM4221	-61	3.7	TTCTGTGACTGGCGTTACAATC
Citrobacter koseri ATCC BAA-895	CKO_03893	-61	4.1	TTTTGTGACTGGCGTTACAATC
Serratia proteamaculans 568	Spro_4477	-80	3.7	AAAAGAGATCATAATCACAGTC
Proteus mirabilis HI4320	PMI2754	-245	3.7	CAGTGAGATGTTAAACACAGTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4379	-205	3.8	TGACGCGATGAGAATCATAAAA

Position: -38 Score: 3.3 Sequence: ATATCCGATTAATTTAACAAAG Locus tag: plu4395
	plu4395	-38	3.3	ATATCCGATTAATTTAACAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceA
Ortholog function: isocitrate lyase
Yersinia pestis KIM	y0016	-254	3.3	ATGAGTTATAGCCATTAAAAAT
Serratia proteamaculans 568	Spro_4502	-228	3.5	TGTTGTTATGTTTATTAACCAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3990	-185	3.3	TTTTTTAATTTTAATCTTCATT
Proteus mirabilis HI4320	PMI2763	-68	3.7	ATTTTTGATTTTTGTAAAAACT
Photorhabdus luminescens subsp. laumondii TTO1	plu4395	-65	3.8	GTTTTTGATTTATTTTAAATAT

Position: -211 Score: 3.4 Sequence: TTTTGTAGTTTATCTTATATAA Position: -65 Score: 3.8 Sequence: GTTTTTGATTTATTTTAAATAT Locus tag: plu4396
	plu4396	-211	3.4	TTTTGTAGTTTATCTTATATAA
		-65	3.8	GTTTTTGATTTATTTTAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceB
Ortholog function: malate synthase A
Escherichia coli str. K-12 substr. MG1655	b4014	-117	3.6	AATTGTTTTTGATTTTGCATTT
Salmonella typhimurium LT2	STM4183	-168	3.3	TTAATTTATATTGTTATCAATA
Citrobacter koseri ATCC BAA-895	CKO_03906	-166	3.3	TATTTTTATTGTTATCAATAAG
Yersinia pestis KIM	y0015	-254	3.3	ATGAGTTATAGCCATTAAAAAT
Serratia proteamaculans 568	Spro_4503	-228	3.5	TGTTGTTATGTTTATTAACCAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3991	-185	3.3	TTTTTTAATTTTAATCTTCATT
Proteus mirabilis HI4320	PMI2764	-68	3.7	ATTTTTGATTTTTGTAAAAACT
Photorhabdus luminescens subsp. laumondii TTO1	plu4396	-65	3.8	GTTTTTGATTTATTTTAAATAT

Position: -271 Score: 5.2 Sequence: TTTTGTGATTTATATCTCAAAA Locus tag: plu4417
	plu4417	-271	5.2	TTTTGTGATTTATATCTCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: udp
Ortholog function: Uridine phosphorylase (EC 2.4.2.3)
Escherichia coli str. K-12 substr. MG1655	b3831	-144	5.2	TTATGTGATTTGCATCACTTTT
		-92	4.2	CATGGTGATGAGTATCACGAAA
Salmonella typhimurium LT2	STM3968	-144	5.1	TATTGTGATGAACATCACTTTT
		-92	4.1	CATAGTGATGGCTGTCACGAAA
Citrobacter koseri ATCC BAA-895	CKO_00173	-143	5.2	TTATGTGATGTAAATCACTATT
		-91	3.9	CATGGTGATGAGCGTCACGAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04327	-143	5.2	TAATGTGATGTGTATCACTATT
		-91	4.1	CTTGGTGACTATCATCACAAAA
Enterobacter sp. 638	Ent638_3962	-143	4.7	TAGTGTGATGCATGTCACTATT
Erwinia amylovora ATCC 49946	EAM_0200	-143	4.6	AATTGCGACTTGTATCACCTTT
		-90	4	ATTAAGGATGTTCATCACATAA
Yersinia pestis KIM	y0444	-149	5.4	ATGTGTGATTTAAATCACAATT
		-97	4	CAAGGTGACATAAATCACGAAA
Serratia proteamaculans 568	Spro_0244	-143	5.3	TTTTGTGACTTTAATCACAAAA
		-125	3.7	AAAAGTTATGTAGATTGCATTC
		-91	4.1	CATAGTGATGGTTGTCACGAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0185	-197	5.1	AAAAGTGATTTAAGTCACATTT
Edwardsiella tarda EIB202	ETAE_0143	-148	4.7	TATTGTGAAAATAATCACAGTT
Proteus mirabilis HI4320	PMI3532	-145	5.1	ATTTGTGATAACTATCACGTTT
		-93	3.6	ACAGGTGACGTCAATCACTAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu4417	-271	5.2	TTTTGTGATTTATATCTCAAAA
		-219	4	TGAAGTGACATTTATCACTAAA

Position: -95 Score: 5 Sequence: TAATTTGAGCCAGTTCACATTT Locus tag: plu4523
	plu4523	-95	5	TAATTTGAGCCAGTTCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deaD
Ortholog function: ATP-independent RNA helicase
Salmonella typhimurium LT2	STM3280.S	-154	3.9	CTTTTTGATTGCCATCACCTTC
		-99	4.4	TACTTTGAGCCGGTTCACACTT
Citrobacter koseri ATCC BAA-895	CKO_04559	-103	3.9	CTTTTTGATTGCCATCACCTTC
		-48	4.4	TACTTTGAGCCGGTTCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03570	-154	3.8	TTTTTTGCTTGCCATCACCTTC
		-99	4.4	TACTTTGAGCCGGTTCACACAT
Enterobacter sp. 638	Ent638_3599	-154	4.1	TCTTATGATTGCCATCACCTTA
		-99	4.4	TACTTTGAGCCGGTTCACACTT
Erwinia amylovora ATCC 49946	EAM_3065	-99	4.8	TAATTTGAGCCGGTTCACACTT
Yersinia pestis KIM	y0696	-96	4.8	TAATTTGAGCCGGTTCACACTT
Serratia proteamaculans 568	Spro_0495	-96	4.8	TAATTTGAGCCGGTTCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0718	-96	4.4	CAATTTGAGCCGGTTCACACTT
Edwardsiella tarda EIB202	ETAE_0411	-96	4.8	TAATTTGAGCCGGTTCACACTT
Proteus mirabilis HI4320	PMI3424	-80	5	TAATTTGAGCCAGTTCACATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4523	-95	5	TAATTTGAGCCAGTTCACATTT

Position: -126 Score: 4 Sequence: AGGTGTTAAATTGATCACGTTT Locus tag: plu4643
	plu4643	-126	4	AGGTGTTAAATTGATCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyaA
Ortholog function: Adenylate cyclase (EC 4.6.1.1)
Proteus mirabilis HI4320	PMI3333	-130	4	AGGTGTTAAATTGATCACGTTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4643	-126	4	AGGTGTTAAATTGATCACGTTT

Position: -268 Score: 3.7 Sequence: TAATTTAATTTAAATTTCAAAA Locus tag: plu4686
	plu4686	-268	3.7	TAATTTAATTTAAATTTCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yifB
Ortholog function: magnesium chelatase family protein
Escherichia coli str. K-12 substr. MG1655	b3765	-266	4.2	TTTTATGATGCGTTTAATAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04266	-226	4.1	TTATATGAAAAAAATCAAAAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4230	-144	3.9	AATTGCGACCCATTACGCACAA
Edwardsiella tarda EIB202	ETAE_0086	-128	3.7	TATTGTTAATGTGTTAATAATT
Photorhabdus luminescens subsp. laumondii TTO1	plu4686	-268	3.7	TAATTTAATTTAAATTTCAAAA

Position: -59 Score: 3.6 Sequence: TTTTTTGAATAAAAATACATTA Locus tag: plu4744
	plu4744	-59	3.6	TTTTTTGAATAAAAATACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Salmonella typhimurium LT2	STM4121	-44	3.5	AATTATGAATAAAAATACATTA
Citrobacter koseri ATCC BAA-895	CKO_03036	-110	4	ATTTGTGAATAAAAATACATTA
Enterobacter sp. 638	Ent638_4028	-44	3.8	AAATGTGAATAAAAATACACTA
Yersinia pestis KIM	y0310	-43	3.7	TTTATTGACATAAATAAAAATA
Serratia proteamaculans 568	Spro_4781	-167	4	TATTGTGAATAAAAATACAATA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0192	-159	3.5	TATTTTGAATAAAAATACAATA
Edwardsiella tarda EIB202	ETAE_3482	-160	3.4	AATTATGAATAAAAATACAATA
Proteus mirabilis HI4320	PMI3237	-57	3.6	TTTTTTGAATAAAAATACATTA
Photorhabdus luminescens subsp. laumondii TTO1	plu4744	-59	3.6	TTTTTTGAATAAAAATACATTA

Position: -65 Score: 3.9 Sequence: TAATGTATTTTTATTCAAAAAA Locus tag: plu4745
	plu4745	-65	3.9	TAATGTATTTTTATTCAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argE
Ortholog function: acetylornithine deacetylase
Escherichia coli str. K-12 substr. MG1655	b3957	-66	3.7	TAGTGTATTTTTATTCATAAAT
Salmonella typhimurium LT2	STM4120	-66	3.9	TAATGTATTTTTATTCATAATT
Citrobacter koseri ATCC BAA-895	CKO_03037	-27	4.3	TAATGTATTTTTATTCACAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04246	-27	4	TATTGTATTTTTATTCAAAATA
Enterobacter sp. 638	Ent638_4029	-66	4.2	TAGTGTATTTTTATTCACATTT
Erwinia amylovora ATCC 49946	EAM_0137	-66	3.8	TATTGTATTTTTATTCACTATT
Yersinia pestis KIM	y0309	-223	3.6	TATTTTTATTTATGTCAATAAA
Serratia proteamaculans 568	Spro_4782	-71	4.3	TATTGTATTTTTATTCACAATA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0191	-65	4	TATTGTATTTTTATTCAAAATA
Edwardsiella tarda EIB202	ETAE_3483	-65	3.9	TATTGTATTTTTATTCATAATT
Proteus mirabilis HI4320	PMI3236	-65	3.9	TAATGTATTTTTATTCAAAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu4745	-65	3.9	TAATGTATTTTTATTCAAAAAA

Position: -213 Score: 4.2 Sequence: ATTTGCGAGCCATATCGAATAA Position: -195 Score: 4.6 Sequence: ATAAATGATTTATATCACACTT Locus tag: plu4760
	plu4760	-213	4.2	ATTTGCGAGCCATATCGAATAA
		-195	4.6	ATAAATGATTTATATCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cytR
Ortholog function: transcriptional repressor
Escherichia coli str. K-12 substr. MG1655	b3934	-128	3.9	AAATTCAATATTCATCACACTT
Citrobacter koseri ATCC BAA-895	CKO_03060	-129	3.8	AAATTAAATATCCATCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04229	-162	3.6	TCTTGCGAGCCGGATCGAAAAA
		-143	3.9	AAATTTAACAAGCATCACGTTT
Yersinia pestis KIM	y0297	-177	3.7	TTCTGCGAGCCAGTTCGAAAAA
		-135	3.6	TTATGCAAATTAGGTAACAAAT
Edwardsiella tarda EIB202	ETAE_3434	-258	4.2	AAGTGCGATCGGGATCGAAAAA
		-175	3.6	ATATGTGATCATATACTCATCG
Proteus mirabilis HI4320	PMI3218	-207	4.3	TTTTGCGAACTACCTCATAAAA
		-189	3.9	AAAAACGATTGGTATCACACTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4760	-213	4.2	ATTTGCGAGCCATATCGAATAA
		-195	4.6	ATAAATGATTTATATCACACTT

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of Crp regulog to Photorhabdus luminescens subsp. laumondii TTO1

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --