Propagation of PurR regulog to Citrobacter rodentium ICC168
| Source regulog: | PurR - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Purine metabolism |
| Effector: | Hypoxanthine; Guanine |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Citrobacter rodentium ICC168 |
| Orthologous TF(s) | ROD_14111 |
| Regulated genes | 24 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -234
Score: 4.9 Sequence: GCGCAAGCGTTTTCCA
Locus tag: ROD_00351
|
||||
| ROD_00351 | -234 | 4.9 | GCGCAAGCGTTTTCCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: carA | ||||
| Ortholog function: carbamoyl-phosphate synthase small subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0032 | -236 | 4.9 | GCGCAAGCGTTTTCCA |
| Salmonella typhimurium LT2 | STM0066 | -236 | 5.1 | GCGCAAGCGTTTTCTA |
| Citrobacter koseri ATCC BAA-895 | CKO_03351 | -209 | 5.1 | ACGCAAGCGTTTTCCA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00040 | -208 | 5 | CCGCAAGCGTTTTCTC |
| Enterobacter sp. 638 | Ent638_0591 | -235 | 4.7 | GTACAAACGTTTTCCT |
| Erwinia amylovora ATCC 49946 | EAM_0660 | -239 | 3.9 | AGACAACCGATTTTAT |
| Yersinia pestis KIM | y3693 | -213 | 5.1 | TCGCAACCGTTTACTC |
| Serratia proteamaculans 568 | Spro_0713 | -240 | 4.7 | CCGCAACCGTTTACCA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3871 | -239 | 5 | TAGCAACCGTTTACTT |
| Proteus mirabilis HI4320 | PMI0020 | -240 | 4.5 | AAGCAAACGGTTAAAT |
|
Position: -154
Score: 5.4 Sequence: ACGCAATCGATTACGC
Locus tag: ROD_04601
|
||||
| ROD_04601 | -154 | 5.4 | ACGCAATCGATTACGC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tsx | ||||
| Ortholog function: nucleoside-specific channel-forming protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0411 | -154 | 5.6 | ACGCAATCGATTACGT |
| Salmonella typhimurium LT2 | STM0413 | -166 | 4.4 | GCGCAAACGTGAACGC |
| -154 | 5.6 | ACGCAATCGATTACGT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02750 | -168 | 4.6 | ACGCAAACGTGAACGC |
| -156 | 5.6 | ACGCAATCGATTACGT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00363 | -156 | 5.4 | ACGCAATCGATTACGC |
| Enterobacter sp. 638 | Ent638_0879 | -161 | 4.6 | ACGCAAACGTGAACGC |
| -149 | 5.6 | ACGCAATCGATTACGT | ||
| Erwinia amylovora ATCC 49946 | EAM_2589 | -290 | 5.1 | AGGCAATCGTTTACCC |
| Serratia proteamaculans 568 | Spro_2072 | -181 | 5.2 | ACGCAATCGATTACCT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3796 | -129 | 5.6 | AGGCAACCGTTTTCGT |
| Edwardsiella tarda EIB202 | ETAE_2935 | -184 | 5.4 | ACGCAATCGATTACGC |
|
Position: -101
Score: 4.3 Sequence: AGGGAAACGATTGCTT
Locus tag: ROD_10071
|
||||
| ROD_10071 | -101 | 4.3 | AGGGAAACGATTGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pyrD | ||||
| Ortholog function: dihydroorotate dehydrogenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0945 | -102 | 4.2 | CGGAAAACGTTTGCGT |
| Salmonella typhimurium LT2 | STM1058 | -101 | 4 | AGGAAAACGATTGCTA |
| Citrobacter koseri ATCC BAA-895 | CKO_02123 | -101 | 4 | AGGAAAACGATTGCTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00974 | -111 | 4.4 | AGGTAATCGTTTGCGC |
| Enterobacter sp. 638 | Ent638_1457 | -110 | 4.3 | AGGAAAACGATTGCGC |
| Erwinia amylovora ATCC 49946 | EAM_1366 | -101 | 3.8 | AAATAAACGTTTTTTA |
| Yersinia pestis KIM | y2755 | -254 | 5.4 | TCGCAAACGTTTACTT |
| Serratia proteamaculans 568 | Spro_1740 | -110 | 4.2 | GGGAAAACGATTGCGT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2538 | -126 | 4.7 | CCGCAAACGTTTTACT |
| Edwardsiella tarda EIB202 | ETAE_1248 | -108 | 3.9 | AGTAAAACGTTTGCTT |
| Proteus mirabilis HI4320 | PMI0771 | -102 | 4.2 | ATTGAAACGTTTACTT |
|
Position: -64
Score: 4.6 Sequence: ACGAAAACGTTTCCGC
Locus tag: ROD_11221
|
||||
| ROD_11221 | -64 | 4.6 | ACGAAAACGTTTCCGC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pyrC | ||||
| Ortholog function: dihydroorotase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1062 | -67 | 4.3 | AGGAAAACGTTTCCGC |
| Salmonella typhimurium LT2 | STM1163 | -65 | 4.6 | ACGAAAACGTTTCCGC |
| Citrobacter koseri ATCC BAA-895 | CKO_02001 | -66 | 4.6 | ACGAAAACGTTTCCGC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01074 | -77 | 4.9 | AGGAAAACGTTTACGC |
| Enterobacter sp. 638 | Ent638_1576 | -82 | 5.1 | ACGAAAACGTTTACGC |
| Proteus mirabilis HI4320 | PMI1678 | -99 | 4.2 | ATTTAATCGTTTTCGT |
| -48 | 3.8 | ATCCAATCGTTGATCT | ||
|
Position: -48
Score: 4.7 Sequence: ACGCAAACGATAACCT
Locus tag: ROD_13631
|
||||
| ROD_13631 | -48 | 4.7 | ACGCAAACGATAACCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ydiJ | ||||
| Ortholog function: predicted FAD-linked oxidoreductase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1687 | -224 | 4.9 | ACGCAAACGATTTACT |
| Salmonella typhimurium LT2 | STM1365 | -100 | 5 | ACGCAAACGATTAAGC |
| Citrobacter koseri ATCC BAA-895 | CKO_01722 | -49 | 4.7 | ACGCAAACGATTAAAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02158 | -68 | 5.2 | ACGCAAACGTTTAGTT |
| Enterobacter sp. 638 | Ent638_1747 | -165 | 5 | ACGCAAACGATTATCT |
| Erwinia amylovora ATCC 49946 | EAM_1648 | -35 | 4 | ACGCAATCGATTCTCA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1856 | -237 | 4.2 | GCGCACACGATTGCGA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2626 | -129 | 3.7 | AGGTAAACGCTTGCCT |
|
Position: -56
Score: 5.4 Sequence: AGGCAAACGATTACTT
Position: 28
Score: 4.4 Sequence: GAGCAAACGTTTCCAC
Locus tag: ROD_14111
|
||||
| ROD_14111 | -56 | 5.4 | AGGCAAACGATTACTT | |
| 28 | 4.4 | GAGCAAACGTTTCCAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purR | ||||
| Ortholog function: purine nucleotide synthesis repressor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1658 | -60 | 5.4 | AGGCAAACGTTTACCT |
| 28 | 4.4 | GAGCAAACGTTTCCAC | ||
| Salmonella typhimurium LT2 | STM1430 | -58 | 5.4 | AGGCAAACGTTTACCT |
| 28 | 4.3 | GGGCAAACGTTTCCAC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_01672 | -60 | 5.6 | AGGCAAACGTTTACTT |
| 28 | 4.4 | GAGCAAACGTTTCCAC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01996 | -59 | 5.7 | AGGCAAACGTTTACGT |
| 28 | 4.6 | GCGCAAACGTTTCCAC | ||
| Enterobacter sp. 638 | Ent638_1789 | -60 | 5.4 | AGGCAAACGTTTACCT |
| 28 | 4.6 | GCGCAAACGTTTCCAC | ||
| Erwinia amylovora ATCC 49946 | EAM_1663 | -62 | 4.3 | AGGCAAACGATTAACA |
| Yersinia pestis KIM | y1950 | -62 | 4.3 | AGGCAAACGATTAACA |
| Serratia proteamaculans 568 | Spro_2195 | -62 | 4.3 | AGGCAAACGATTAACA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1925 | -60 | 4.3 | AGGCAAACGATTAACA |
| Edwardsiella tarda EIB202 | ETAE_1674 | -57 | 4.3 | AGGCAAACGATTAACA |
|
Position: -51
Score: 6 Sequence: ACGCAAACGTTTTCGT
Locus tag: ROD_18891
|
||||
| ROD_18891 | -51 | 6 | ACGCAAACGTTTTCGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purT | ||||
| Ortholog function: phosphoribosylglycinamide formyltransferase 2 | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1849 | -53 | 6 | ACGCAAACGTTTTCGT |
| Salmonella typhimurium LT2 | STM1883 | -51 | 6 | ACGCAAACGTTTTCGT |
| Citrobacter koseri ATCC BAA-895 | CKO_01117 | -52 | 6 | ACGCAAACGTTTTCGT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02364 | -56 | 6 | ACGCAAACGTTTTCGT |
| Enterobacter sp. 638 | Ent638_2418 | -49 | 6 | ACGCAAACGTTTTCGT |
| Erwinia amylovora ATCC 49946 | EAM_1994 | -58 | 6 | ACGCAAACGTTTTCGT |
| Yersinia pestis KIM | y2533 | -85 | 5.9 | ACGCAATCGTTTTCGT |
| Serratia proteamaculans 568 | Spro_2805 | -74 | 6 | ACGCAAACGTTTTCGT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2477 | -59 | 6 | ACGCAAACGTTTTCGT |
| Edwardsiella tarda EIB202 | ETAE_1838 | -107 | 5.9 | ACGCAAACGGTTTCGT |
| Proteus mirabilis HI4320 | PMI2187 | -50 | 5.4 | ATGCAAACGTTTGCGT |
|
Position: -148
Score: 5 Sequence: ACGCAAACGTGTGCGT
Locus tag: ROD_24251
|
||||
| ROD_24251 | -148 | 5 | ACGCAAACGTGTGCGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purC | ||||
| Ortholog function: phosphoribosylaminoimidazole-succinocarboxamidesynthase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2476 | -169 | 5 | ACGCAAACGTGTGCGT |
| Salmonella typhimurium LT2 | STM2487 | -131 | 5 | ACGCAAACGTGTGCGT |
| Citrobacter koseri ATCC BAA-895 | CKO_00311 | -145 | 5 | ACGCAAACGTGTGCGT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02810 | -187 | 5 | ACGCAAACGTGTGCGT |
| Enterobacter sp. 638 | Ent638_2972 | -68 | 5 | ACGCAAACGTGTGCGT |
| Erwinia amylovora ATCC 49946 | EAM_2430 | -151 | 4.6 | ACGTAAACGATTGCTT |
| Serratia proteamaculans 568 | Spro_3507 | -88 | 4.1 | ACGGTATCGTTTGCGT |
| Edwardsiella tarda EIB202 | ETAE_1098 | -97 | 4.5 | ACGCAATCGTTTGGCT |
|
Position: -78
Score: 5.1 Sequence: TCGCAAACGTTTGCTT
Locus tag: ROD_24421
|
||||
| ROD_24421 | -78 | 5.1 | TCGCAAACGTTTGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purM | ||||
| Ortholog function: phosphoribosylformylglycinamidine cyclo-ligase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2499 | -79 | 5.1 | TCGCAAACGTTTGCTT |
| Salmonella typhimurium LT2 | STM2499.S | -63 | 5.1 | TCGCAAACGTTTGCTT |
| Citrobacter koseri ATCC BAA-895 | CKO_00291 | -299 | 5.1 | TCGCAAACGTTTGCTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02824 | -74 | 5.1 | TCGCAAACGTTTGCTT |
| Enterobacter sp. 638 | Ent638_2988 | -79 | 4.9 | TCGCAAACGTTTGCCT |
| Erwinia amylovora ATCC 49946 | EAM_2441 | -84 | 5.1 | TCGCAAACGTTTGCTT |
| Yersinia pestis KIM | y1407 | -242 | 4.9 | TCGCAAACGTTTGCCT |
| Serratia proteamaculans 568 | Spro_3524 | -59 | 4.9 | TCGCAAACGTTTGCCT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1254 | -129 | 4.6 | TCGCAAACGATTGCCT |
| Edwardsiella tarda EIB202 | ETAE_1086 | -116 | 4.9 | TAGCAAACGTTTGCTT |
| Proteus mirabilis HI4320 | PMI1575 | -79 | 5.1 | TCGCAAACGTTTGCTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2760 | -80 | 5.1 | TCGCAAACGTTTGCTT |
|
Position: -68
Score: 5.2 Sequence: ATGCAATCGGTTACGC
Locus tag: ROD_24491
|
||||
| ROD_24491 | -68 | 5.2 | ATGCAATCGGTTACGC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: guaB | ||||
| Ortholog function: inosine-5'-monophosphate dehydrogenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2508 | -69 | 5.2 | ATGCAATCGGTTACGC |
| Salmonella typhimurium LT2 | STM2511 | -68 | 5.3 | ATGCAACCGATTACGT |
| Citrobacter koseri ATCC BAA-895 | CKO_00279 | -69 | 5.3 | ATGCAATCGGTTTCGC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02834 | -66 | 5.2 | ATGCAATCGGTTACGC |
| Enterobacter sp. 638 | Ent638_2999 | -67 | 5.2 | ATGCAATCGGTTACGC |
| Erwinia amylovora ATCC 49946 | EAM_2465 | -78 | 4.9 | AGGCAATCGATTACGG |
| Yersinia pestis KIM | y1362 | 6 | 5.2 | AGGCAATCGATTACGC |
| Serratia proteamaculans 568 | Spro_3596 | -78 | 5.1 | AGGCAACCGATTACGC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3209 | -79 | 5.2 | AGGCAATCGATTACGC |
| Edwardsiella tarda EIB202 | ETAE_2787 | -79 | 5 | AGGCAACCGGTTTCGG |
| Proteus mirabilis HI4320 | PMI1546 | -77 | 4.9 | AAGCAACCGATTACGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2713 | -80 | 5.3 | AGGCAACCGATTACGT |
|
Position: -133
Score: 4.5 Sequence: AGGTAATCGTTTGCGT
Locus tag: ROD_24931
|
||||
| ROD_24931 | -133 | 4.5 | AGGTAATCGTTTGCGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glyA | ||||
| Ortholog function: serine/glycine hydroxymethyltransferase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2551 | -134 | 4.5 | AGGTAATCGTTTGCGT |
| Salmonella typhimurium LT2 | STM2555 | -132 | 4.5 | AGGTAATCGTTTGCGT |
| Citrobacter koseri ATCC BAA-895 | CKO_00237 | -126 | 4.5 | AGGTAATCGTTTGCGT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02876 | -133 | 4.5 | AGCCAATCGTTTGCGT |
| Enterobacter sp. 638 | Ent638_3036 | -131 | 4.7 | AGGTAAACGTTTGCGT |
| Erwinia amylovora ATCC 49946 | EAM_2497 | -129 | 4.5 | AGCCAATCGTTTGCGT |
| Yersinia pestis KIM | y1322 | -324 | 4.5 | AGCCAATCGTTTGCGT |
| Serratia proteamaculans 568 | Spro_3638 | -135 | 4 | TGCCAATCGTTTGCGT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3250 | -152 | 3.8 | AGCTAATCGTTTGCGT |
| Edwardsiella tarda EIB202 | ETAE_2821 | -147 | 4 | TGCCAAACGATTGCGT |
| Proteus mirabilis HI4320 | PMI1867 | -128 | 4.7 | TAGCAAACGATTGCGT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3291 | -126 | 5.2 | ATGCAATCGTTTGCGT |
|
Position: -34
Score: 4.8 Sequence: TAGCAACCGGTTACGC
Locus tag: ROD_24961
|
||||
| ROD_24961 | -34 | 4.8 | TAGCAACCGGTTACGC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnB | ||||
| Ortholog function: nitrogen regulatory protein P-II | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2553 | -83 | 4.7 | ATGCAAACGATTTCAA |
| Citrobacter koseri ATCC BAA-895 | CKO_00234 | -99 | 4.7 | ATGCAAACGATTTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02878 | -34 | 5.2 | AAGCAACCGGTTACGC |
| Enterobacter sp. 638 | Ent638_3038 | -48 | 4.8 | GAGCAATCGATTACGA |
| Proteus mirabilis HI4320 | PMI1870 | -47 | 3.8 | TCACAAGCGGTTTTGG |
|
Position: -91
Score: 5.9 Sequence: ACGCAAACGGTTTCGT
Locus tag: ROD_25001
|
||||
| ROD_25001 | -91 | 5.9 | ACGCAAACGGTTTCGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purL | ||||
| Ortholog function: phosphoribosylformylglycinamidine synthase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2557 | -92 | 5.9 | ACGCAAACGGTTTCGT |
| Salmonella typhimurium LT2 | STM2565 | -90 | 5.9 | ACGCAAACGGTTTCGT |
| Citrobacter koseri ATCC BAA-895 | CKO_00226 | 29 | 5.9 | ACGCAAACGGTTTCGT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02882 | -91 | 5.9 | ACGCAAACGGTTTCGT |
| Enterobacter sp. 638 | Ent638_3042 | -101 | 5.9 | ACGCAAACGGTTTCGT |
| Erwinia amylovora ATCC 49946 | EAM_2502 | -104 | 5.6 | GCGCAAACGGTTTCGT |
| Yersinia pestis KIM | y1309 | -130 | 5.9 | ACGCAAACGGTTTCGT |
| Serratia proteamaculans 568 | Spro_3654 | -113 | 5.9 | ACGCAAACGGTTTCGT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3258 | -113 | 5.9 | ACGCAAACGGTTTCGT |
| Edwardsiella tarda EIB202 | ETAE_0774 | -116 | 5.9 | ACGCAAACGGTTTCGT |
| Proteus mirabilis HI4320 | PMI1875 | -98 | 5.9 | ACGCAAACGGTTTCGT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3317 | -91 | 5.9 | ACGCAAACGGTTTCGT |
|
Position: -22
Score: 4.8 Sequence: AAGCAAACGGTGATTT
Locus tag: ROD_32371
|
||||
| ROD_32371 | -22 | 4.8 | AAGCAAACGGTGATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purA | ||||
| Ortholog function: adenylosuccinate synthetase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4177 | -22 | 4.8 | AAGCAAACGGTGATTT |
| Salmonella typhimurium LT2 | STM4366 | -22 | 4.8 | AAGCAAACGGTGATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_03657 | -22 | 4.8 | AAGCAAACGGTGATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04576 | -22 | 4.8 | AAGCAAACGGTGATTT |
| Enterobacter sp. 638 | Ent638_0360 | -21 | 4.6 | AAGCAATCGGTGATTT |
| Erwinia amylovora ATCC 49946 | EAM_0441 | -80 | 4.2 | GCGCAATCGTATGCTA |
| -21 | 4.6 | AAGCAATCGGTGATTT | ||
| Serratia proteamaculans 568 | Spro_0436 | -21 | 4.6 | AAGCAACCGGTGATTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3929 | -81 | 4.2 | GCGCAACCGTGTGCTA |
| Edwardsiella tarda EIB202 | ETAE_0358 | -81 | 4.4 | GCGCAATCGTGTGCGA |
|
Position: -271
Score: 4.1 Sequence: ACGATAACGTTTGCGC
Position: -127
Score: 3.9 Sequence: AGCTAAACGTTTGCTT
Locus tag: ROD_34501
|
||||
| ROD_34501 | -271 | 4.1 | ACGATAACGTTTGCGC | |
| -127 | 3.9 | AGCTAAACGTTTGCTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yjcD | ||||
| Ortholog function: putative xanthine/uracil permease | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4064 | -272 | 4.1 | ACGATAACGTTTGCGC |
| -130 | 3.9 | AGCTAAACGTTTGCTT | ||
| Salmonella typhimurium LT2 | STM4268 | -271 | 4.1 | ACGATAACGTTTGCGC |
| -128 | 3.9 | AGCTAAACGTTTGCTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03825 | -263 | 4.1 | ACGATAACGTTTGCGC |
| -121 | 3.9 | AGTTAAACGTTTGCTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04465 | -316 | 4.1 | ACGATAACGTTTGCGC |
| -129 | 3.9 | AGTTAAACGTTTGCTT | ||
| Enterobacter sp. 638 | Ent638_0269 | -278 | 4.1 | ACGATAACGTTTGCGC |
| -134 | 3.9 | AGCTAAACGTTTGCTT | ||
| Erwinia amylovora ATCC 49946 | EAM_0319 | -146 | 3.8 | ATAAAAACGTTTGCCT |
|
Position: -122
Score: 5.8 Sequence: GCGCAAACGTTTTCGT
Locus tag: ROD_37461
|
||||
| ROD_37461 | -122 | 5.8 | GCGCAAACGTTTTCGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purH | ||||
| Ortholog function: phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4006 | -123 | 5.8 | GCGCAAACGTTTTCGT |
| Salmonella typhimurium LT2 | STM4176 | -123 | 5.8 | GCGCAAACGTTTTCGT |
| Citrobacter koseri ATCC BAA-895 | CKO_02983 | -123 | 5.8 | GCGCAAACGTTTTCGT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04388 | -126 | 5.8 | GCGCAAACGTTTTCGT |
| Enterobacter sp. 638 | Ent638_0216 | -60 | 5.8 | GCGCAAACGTTTTCGT |
| Erwinia amylovora ATCC 49946 | EAM_0249 | -144 | 5.7 | GCGCAAACGTTTTCGC |
| Yersinia pestis KIM | y0502 | -111 | 5.7 | ACGCAATCGTTTTCGC |
| Serratia proteamaculans 568 | Spro_0293 | -179 | 5.9 | ACGCAAACGTTTTCGC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0241 | -159 | 5.9 | ACGCAAACGTTTTCGC |
| Edwardsiella tarda EIB202 | ETAE_0186 | -116 | 6 | ACGCAAACGTTTTCGT |
| Proteus mirabilis HI4320 | PMI2768 | -155 | 5.6 | ACGCAAACGTTTGCGT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0495 | -283 | 6 | ACGCAAACGTTTTCGT |
|
Position: -156
Score: 4.9 Sequence: ACGCAATCGTTGCCGT
Locus tag: ROD_40191
|
||||
| ROD_40191 | -156 | 4.9 | ACGCAATCGTTGCCGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purP | ||||
| Ortholog function: high affinity adenine permease | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3714 | -147 | 3.7 | AGTTTAACGTTTTCGT |
| -115 | 4.9 | ACGCAATCGTTGCCGT | ||
| Salmonella typhimurium LT2 | STM3851.S | -118 | 4.9 | ACGCAATCGTTGCCGT |
| Citrobacter koseri ATCC BAA-895 | CKO_00059 | -148 | 3.7 | AGTTTAACGTTTTCGT |
| -116 | 4.9 | ACGCAATCGTTGCCGT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04124 | -151 | 3.7 | AGTTTAACGTTTTCGT |
| -119 | 4.9 | ACGCAATCGTTGCCGT | ||
| Enterobacter sp. 638 | Ent638_4143 | -115 | 4.9 | ACGCAATCGTTGCCGT |
| Erwinia amylovora ATCC 49946 | EAM_3460 | -99 | 4.8 | GCGCAATCGGTTGCGA |
| Serratia proteamaculans 568 | Spro_0021 | 87 | 4 | ACGGAAACGATTGCCG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4464 | 162 | 4 | ACGGAAACGATTGCCG |
| Edwardsiella tarda EIB202 | ETAE_3545 | -132 | 3.8 | ATATAAGCGTTTGCGT |
| Proteus mirabilis HI4320 | PMI2915 | -92 | 5.5 | ACGCAATCGATTACTT |
|
Position: -68
Score: 4.8 Sequence: TGGCAAACGTTTGCTT
Position: 30
Score: 4.9 Sequence: GCGCAACCGGTTGCGC
Locus tag: ROD_41621
|
||||
| ROD_41621 | -68 | 4.8 | TGGCAAACGTTTGCTT | |
| 30 | 4.9 | GCGCAACCGGTTGCGC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: xanP | ||||
| Ortholog function: xanthine/uracil permease, NCS2 family | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3654 | -68 | 4.8 | TGGCAAACGTTTGCTT |
| 30 | 4.9 | GCGCAACCGGTTGCGC | ||
| Salmonella typhimurium LT2 | STM3747 | -68 | 4.9 | TCGCAATCGTTTGCTT |
| 30 | 4.9 | GCGCAACCGGTTGCGC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_05111 | -53 | 5.1 | ATGCAATCGTTTGCTT |
| 45 | 4.9 | GCGCAACCGGTTGCGC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04013 | -68 | 4.8 | TGGCAAACGTTTGCTT |
| 30 | 4.9 | GCGCAACCGGTTGCGC | ||
| Enterobacter sp. 638 | Ent638_0073 | -68 | 4.9 | TCGCAACCGTTTGCTT |
| 30 | 4.8 | GCGCAACCGATTGCGC | ||
| Erwinia amylovora ATCC 49946 | EAM_0040 | -69 | 4.6 | TAGCAAACGATTGCTT |
| Yersinia pestis KIM | y0107 | -18 | 5.1 | GCGCAAACGATTGCTT |
| Serratia proteamaculans 568 | Spro_4873 | -70 | 5.1 | GCGCAACCGTTTGCTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0035 | -74 | 4.9 | TAGCAAACGTTTGCTT |
| Edwardsiella tarda EIB202 | ETAE_0025 | -70 | 5.3 | ACGCAAACGATTGCTT |
| Proteus mirabilis HI4320 | PMI2868 | -68 | 5.3 | ACGCAAACGATTGCTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0247 | -68 | 5.3 | ACGCAAACGATTGCTT |
|
Position: -198
Score: 3.7 Sequence: AGGTTAACGATTGCGT
Locus tag: ROD_43461
|
||||
| ROD_43461 | -198 | 3.7 | AGGTTAACGATTGCGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhhQ | ||||
| Ortholog function: conserved inner membrane protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3471 | -159 | 3.7 | AGGTTAACGATTGCGT |
| Salmonella typhimurium LT2 | STM3579 | -108 | 3.7 | AGGTTAACGATTGCGT |
| Citrobacter koseri ATCC BAA-895 | CKO_04901 | -109 | 3.8 | AAGTTAACGATTGCGT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03837 | -147 | 3.8 | AGGTTAACGTTTGCGC |
| -93 | 3.7 | ATGCAGCCGTTTTTAA | ||
| Enterobacter sp. 638 | Ent638_3878 | -160 | 3.7 | AGGTTAACGATTGCGT |
| Erwinia amylovora ATCC 49946 | EAM_3301 | -164 | 3.8 | GTCCAAAAGATTTCGC |
| Yersinia pestis KIM | y0408 | -90 | 3.8 | GCGCAAACGCGTATTA |
| Serratia proteamaculans 568 | Spro_0204 | -257 | 4 | GCGTTAACGTTTGCGT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4354 | -150 | 4.1 | ACGACAACGTTTGCGC |
| Edwardsiella tarda EIB202 | ETAE_0019 | -127 | 3.8 | GCGTTAACGATTGCGT |
| Proteus mirabilis HI4320 | PMI3596 | -53 | 3.8 | AATCATACGTTTTATT |
|
Position: -74
Score: 4.4 Sequence: ACGGAAACGTTTGCAT
Locus tag: ROD_46031
|
||||
| ROD_46031 | -74 | 4.4 | ACGGAAACGTTTGCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: codB | ||||
| Ortholog function: cytosine permease | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0336 | -82 | 4.6 | ACGAAAACGATTGCTT |
| Salmonella typhimurium LT2 | STM3333 | -74 | 4.8 | ACGAAAACGTTTGCTT |
| Edwardsiella tarda EIB202 | ETAE_3253 | -83 | 4.6 | AAGAAAACGTTTGCTT |
| Proteus mirabilis HI4320 | PMI1458 | -80 | 4.4 | ACGAAAACGTTTGCAT |
|
Position: -103
Score: 4.5 Sequence: ACGCAAACGTTCATAT
Locus tag: ROD_49181
|
||||
| ROD_49181 | -103 | 4.5 | ACGCAAACGTTCATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: serA | ||||
| Ortholog function: D-3-phosphoglycerate dehydrogenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2913 | -95 | 4.5 | ACGCAAACGTTCATAT |
| Salmonella typhimurium LT2 | STM3062 | -102 | 4.2 | GCGCAAACGTTCATAT |
| Citrobacter koseri ATCC BAA-895 | CKO_04278 | -105 | 4.5 | ACGCAAACGTTCATAT |
| -87 | 4.3 | CCGCAATAGTTTTTTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03348 | -99 | 4.5 | ACGCAAACGTTCATAT |
| Enterobacter sp. 638 | Ent638_3332 | -100 | 4.5 | ACGCAAACGTTCATAT |
| Erwinia amylovora ATCC 49946 | EAM_2798 | -213 | 4.8 | AGGCAATCGTTTTTAT |
| Yersinia pestis KIM | y3301 | 9 | 4.4 | AGGCAATCGTTTGTAT |
| Serratia proteamaculans 568 | Spro_3923 | -99 | 4.1 | GGGCAATCGTTTGTAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3905 | -98 | 4.4 | AAGCAATCGTTTGTAT |
| Proteus mirabilis HI4320 | PMI2031 | -94 | 4 | GTGCAATCGGTTGTAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3605 | -91 | 4.3 | TAGCAATCGTTTATAT |
|
Position: -106
Score: 4 Sequence: AAGAGAACGTTTGCGT
Locus tag: ROD_49281
|
||||
| ROD_49281 | -106 | 4 | AAGAGAACGTTTGCGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gcvT | ||||
| Ortholog function: Glycine cleavage system, aminomethyltransferase (EC 2.1.2.10) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2905 | -106 | 3.8 | AAGAGAACGATTGCGT |
| Salmonella typhimurium LT2 | STM3055 | -108 | 4 | AAGAGAACGTTTGCGT |
| Citrobacter koseri ATCC BAA-895 | CKO_04269 | -106 | 4 | AAGAGAACGTTTGCGT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03341 | -107 | 4 | AAGAGAACGTTTGCGT |
| Enterobacter sp. 638 | Ent638_3324 | -104 | 4 | AAGAGAACGTTTGCGT |
| Erwinia amylovora ATCC 49946 | EAM_2791 | -74 | 4 | AGGGTAACGTTTGCGT |
| Yersinia pestis KIM | y3294 | -104 | 4 | GAGCAAAAGGTATCGT |
| -98 | 3.8 | AAGGTATCGTTTGCGT | ||
| Serratia proteamaculans 568 | Spro_3916 | -163 | 3.8 | AAGGTATCGTTTGCGT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3598 | -108 | 3.8 | AAGATATCGTTTGCGT |
|
Position: -94
Score: 3.9 Sequence: ACACAATCTGTTTTTT
Locus tag: ROD_50491
|
||||
| ROD_50491 | -94 | 3.9 | ACACAATCTGTTTTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: speB | ||||
| Ortholog function: Agmatinase (EC 3.5.3.11) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2937 | -208 | 4 | AAACAAGAGTTTTCTC |
| -134 | 4.2 | AAGAAACCGGTTGCGC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04314 | -271 | 4 | AAACAAGAGTTTTCTC |
| Enterobacter sp. 638 | Ent638_3343 | -208 | 3.8 | ATCCAAGAGTTTTCTC |