Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Yersinia pestis biovar Medievalis str. 91001

Reference regulog properties
Source regulog: Fur - Enterobacteriales
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia pestis biovar Medievalis str. 91001
Orthologous TF(s) YP1081
Regulated genes 37
Built upon 656 sites [see more]
Predicted regulatory interactions in Yersinia pestis biovar Medievalis str. 91001
Locus tag Position Score Sequence
Position: -118
Score: 4.2
Sequence: GAGCATGAAAATAATTCTC
Position: -112
Score: 4.5
Sequence: GAAAATAATTCTCAGTATT
Locus tag: YP0134
YP0134 -118 4.2 GAGCATGAAAATAATTCTC
-112 4.5 GAAAATAATTCTCAGTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: ferrous iron transport protein A
Escherichia coli str. K-12 substr. MG1655 b3408 -138 3.4 GcTgATagaAAcCATTcTC
-132 4.5 AGAAACCATTCTCATTATC
Salmonella typhimurium LT2 STM3505 -140 3.5 GAagATagaAAcCATTcTC
-133 4.5 AGAAACCATTCTCATTATC
Citrobacter koseri ATCC BAA-895 CKO_04830 -139 4.1 GATGATAAAAACCATTCTC
-133 4.7 AAAAACCATTCTCATTATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03778 -133 4.1 GATGATAAAAACCATTCTC
-127 4.7 AAAAACCATTCTCATTATC
Enterobacter sp. 638 Ent638_3821 -62 4.5 AGAAACCATTCTCATTATC
Yersinia pestis KIM y3912 -118 4.1 GAGCATGAAAATAATTCTC
-112 4.4 GAAAATAATTCTCAGTATT
Serratia proteamaculans 568 Spro_4628 -155 4.3 GAATACGATAATGATTCTC
-149 4.9 GATAATGATTCTCACTATT
Edwardsiella tarda EIB202 ETAE_3283 -163 4.3 GAAAACGATTATCAGTTTT
-157 4.1 GATTATCAGTTTTATTATA
Proteus mirabilis HI4320 PMI2920 -138 4 AAAGATGGTTATAATTCTC
-132 4.3 GGTTATAATTCTCATTTGC
-59 4.8 GTTAATAATTATCAGTATC
-53 4.6 AATTATCAGTATCATTATT
Photorhabdus luminescens subsp. laumondii TTO1 plu0209 -244 4 AATGTTGGTTATTATTCTC
-238 4.2 GGTTATTATTCTCATTTGC
Position: -58
Score: 4.1
Sequence: TGAAATAAAACTCATTCTT
Position: -52
Score: 4
Sequence: AAAACTCATTCTTATTTAC
Locus tag: YP0204
YP0204 -58 4.1 TGAAATAAAACTCATTCTT
-52 4 AAAACTCATTCTTATTTAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfd
Ortholog function: bacterioferritin-associated ferredoxin
Escherichia coli str. K-12 substr. MG1655 b3337 -51 3.9 tgaAATaAgAActATTtTC
-45 3.9 aAgAActATttTCATTtat
Salmonella typhimurium LT2 STM3444 -55 4.6 TGTAATCATAACCATTCTC
-49 4.3 CATAACCATTCTCATTTAC
Citrobacter koseri ATCC BAA-895 CKO_04744 -55 4.3 TGTAATCATAACTATTCTC
-49 4.2 CATAACTATTCTCATTTAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03723 -55 4.6 TGTAATCATAACCATTCTC
-49 3.9 cATAAccATtcTCATTtaa
Enterobacter sp. 638 Ent638_3755 -55 4.7 TGTAATCATAATTATTCTC
-49 4.2 CATAATTATTCTCACTTAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4034 -132 3.9 tgaAATaAaAATaATTcTt
-126 4.4 AAAAATAATTCTTATTTAC
Proteus mirabilis HI4320 PMI3252 -57 4.2 TGAAATAACAATGATTATC
-51 4.8 AACAATGATTATCATTTAC
Photorhabdus luminescens subsp. laumondii TTO1 plu4729 -59 4.4 TGAAATGAGACTCATTATT
-53 3.6 GAgAcTcATtATtATTtaa
Position: -157
Score: 4.6
Sequence: CGTTTTAATAATCATTATC
Position: -151
Score: 4.9
Sequence: AATAATCATTATCGTTACC
Locus tag: YP0293
YP0293 -157 4.6 CGTTTTAATAATCATTATC
-151 4.9 AATAATCATTATCGTTACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fhuC
Ortholog function: iron-hydroxamate transporter ATP-binding subunit
Escherichia coli str. K-12 substr. MG1655 b0151 -57 4.4 CTTTATAATAATCATTCTC
-51 4.5 AATAATCATTCTCGTTTAC
Salmonella typhimurium LT2 STM0192 -56 4.8 GGTTATAATAATAATTATC
-50 4.8 AATAATAATTATCGTTTAC
Citrobacter koseri ATCC BAA-895 CKO_03217 -57 4 GGTCATAAGAATAATTCTC
-51 4.3 AAGAATAATTCTCGTTTAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00166 -56 4 CGTCATAATAATAATTCTC
-50 4.5 AATAATAATTCTCGTTTAC
Enterobacter sp. 638 Ent638_0691 -58 4.3 GGTCATAATAATAATTCTC
-52 4.5 AATAATAATTCTCGTTTAC
Yersinia pestis KIM y0796 -157 4.4 CGTTTTAATAATCATTATC
-151 4.7 AATAATCATTATCGTTACC
Serratia proteamaculans 568 Spro_3978 -60 4.7 GCTTATAATAATTATTATC
-54 4.7 AATAATTATTATCGTTTAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3312 -123 4.3 CTTTATCGTAATCATTATC
-117 4.5 CGTAATCATTATCGTTCTC
Position: -103
Score: 4.7
Sequence: AGTAATGATAATTGATATC
Position: -97
Score: 4.6
Sequence: GATAATTGATATCATTTGC
Locus tag: YP_0347
YP_0347 -103 4.7 AGTAATGATAATTGATATC
-97 4.6 GATAATTGATATCATTTGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: cfrA
Ortholog function: TonB-dependent outer membrane receptor
Citrobacter koseri ATCC BAA-895 CKO_01134 -4 4.8 TGTAATGATAATTATTTTT
2 5 GATAATTATTTTTATTATC
8 4.5 TATTTTTATTATCATTTTC
Yersinia pestis KIM y0850 -103 4.6 AGTAATGATAATTGATATC
-97 4.4 GATAATTGATATCATTTGC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2722 -100 4.6 GCAAATGATTTTAATTTTC
-94 4.3 GATTTTAATTTTCATTTAC
Position: -103
Score: 5.4
Sequence: TATAATGATAATAATTATC
Position: -97
Score: 4.7
Sequence: GATAATAATTATCATTGAA
Locus tag: YP1025
YP1025 -103 5.4 TATAATGATAATAATTATC
-97 4.7 GATAATAATTATCATTGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gpmA
Ortholog function: phosphoglyceromutase 1
Escherichia coli str. K-12 substr. MG1655 b0755 -47 5 TATAATGAGAATTATTATC
-41 4.7 GAGAATTATTATCATTAAA
Salmonella typhimurium LT2 STM0772 -47 5 TATAATGAGAATTATTATC
-41 4.5 GAGAATTATTATCATTACA
Citrobacter koseri ATCC BAA-895 CKO_02381 -46 5 TATAATGAGAATTATTATC
-40 4.5 GAGAATTATTATCATTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00768 -96 4.6 TATAATGAGAATAGTTATC
Enterobacter sp. 638 Ent638_1246 -164 4.7 TATAATGAGAATTGTTATC
-158 4.1 GAGAATTGTTATCATTCAA
Yersinia pestis KIM y3048 -103 5.3 TATAATGATAATAATTATC
-97 4.6 GATAATAATTATCATTGAA
Serratia proteamaculans 568 Spro_1288 -51 4.9 TATAATGATTTTCGTTATC
Edwardsiella tarda EIB202 ETAE_2569 -49 4.6 CATGATGATAATAATTATC
-43 5.3 GATAATAATTATCATTATA
Position: -90
Score: 4.4
Sequence: CTTATTGATAAGTATTATC
Position: -84
Score: 4.7
Sequence: GATAAGTATTATCATTTGC
Locus tag: YP1282
YP1282 -90 4.4 CTTATTGATAAGTATTATC
-84 4.7 GATAAGTATTATCATTTGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yiuA
Ortholog function: siderophore ABC transporter, substrate binding periplasmic protein
Yersinia pestis KIM y2875 -45 4.3 CTTATTGATAAGTATTATC
-39 4.5 GATAAGTATTATCATTTGC
Photorhabdus luminescens subsp. laumondii TTO1 plu2853 -78 4.3 CATATTGATAAGTATTCTC
-72 4 GATAAGTATTCTCATTTGT
Position: -67
Score: 5
Sequence: GCTATTGATAATCACTATC
Position: -61
Score: 4.6
Sequence: GATAATCACTATCATTCTG
Locus tag: YP1417
YP1417 -67 5 GCTATTGATAATCACTATC
-61 4.6 GATAATCACTATCATTCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: fhuF
Ortholog function: ferric iron reductase involved in ferric hydroximate transport
Escherichia coli str. K-12 substr. MG1655 b4367 -122 5.1 GATAATGATAACCAATATC
-99 4.5 GATAATTTTTATCATTTGC
-34 4 AGCAATCATTATCATTTAG
Salmonella typhimurium LT2 STM4550 -238 4 GGAATTGATAATGATAACC
-232 5.1 GATAATGATAACCAATATC
Citrobacter koseri ATCC BAA-895 CKO_03429 -234 4.8 GATAATGATAACCAATAGC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04821 -44 4.5 AATATCAGTAATCATTATC
-38 4.4 AGTAATCATTATCATTTAG
Enterobacter sp. 638 Ent638_0527 -237 5.1 GATAATGATAACCAATATC
Yersinia pestis KIM y2642 -67 4.9 GCTATTGATAATCACTATC
-61 4.4 GATAATCACTATCATTCTG
Photorhabdus luminescens subsp. laumondii TTO1 plu4627 -100 4.3 GACAATGATAATAATAATA
-94 5.3 GATAATAATAATAATTATC
-88 4.9 AATAATAATTATCATAATT
-82 4.1 AATTATCATAATTATATTT
Position: -205
Score: 4.9
Sequence: ATAAATAATAATCATTTGC
Locus tag: YP1427
YP1427 -205 4.9 ATAAATAATAATCATTTGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: plu4621
Ortholog function: unknown
Photorhabdus luminescens subsp. laumondii TTO1 plu4621 -196 4.6 GTTAATGATAATAATTTGT
-190 4.2 GATAATAATTTGTATTAAT
Position: -84
Score: 4.4
Sequence: CAGAATGATAATCACAATC
Position: -78
Score: 4.3
Sequence: GATAATCACAATCGTTTTA
Locus tag: YP1539
YP1539 -84 4.4 CAGAATGATAATCACAATC
-78 4.3 GATAATCACAATCGTTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yijD
Ortholog function: iron permease FTR1
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01045 -76 5 TGTAATGATAATCACTATC
-70 4.2 GATAATCACTATCATAAAT
Enterobacter sp. 638 Ent638_1545 -76 4.9 CGTAATGATAATCACTATC
Erwinia amylovora ATCC 49946 EAM_2059 -80 4.6 GATAATGATAATCCCTATC
Yersinia pestis KIM y2452 -84 4.4 CAGAATGATAATCACAATC
-78 4.3 GATAATCACAATCGTTTTA
Serratia proteamaculans 568 Spro_2929 -109 4.8 CAGAATGATAATCACTATC
Position: -191
Score: 3.7
Sequence: GTGGATGACTATCATTAAA
Position: -178
Score: 4
Sequence: ATTAAACAGACTCATTCTC
Position: -126
Score: 4.2
Sequence: ACCAATAGGAATCATTATC
Position: -120
Score: 4.1
Sequence: AGGAATCATTATCTTTAGT
Position: -93
Score: 4.5
Sequence: AATAATGTGAATGATTATC
Position: -87
Score: 4.2
Sequence: GTGAATGATTATCATGATG
Position: -70
Score: 3.4
Sequence: TGCTTTGGTATTTATTTTC
Position: -64
Score: 4.2
Sequence: GGTATTTATTTTCATTTAA
Locus tag: YP1610
YP1610 -191 3.7 GTGGATGACTATCATTAAA
-178 4 ATTAAACAGACTCATTCTC
-126 4.2 ACCAATAGGAATCATTATC
-120 4.1 AGGAATCATTATCTTTAGT
-93 4.5 AATAATGTGAATGATTATC
-87 4.2 GTGAATGATTATCATGATG
-70 3.4 TGCTTTGGTATTTATTTTC
-64 4.2 GGTATTTATTTTCATTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ftnA
Ortholog function: ferritin
Escherichia coli str. K-12 substr. MG1655 b1905 -127 3.4 GgTAATGcgttTtATTccC
-121 3 GcgttTtATtccCATTcgt
Salmonella typhimurium LT2 STM1935 -100 4 AATAATTAAATTTAATATT
Citrobacter koseri ATCC BAA-895 CKO_01042 -97 4.3 AATAATTAAATTTATTATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02402 -161 4 ATAAATTAAAAGCATTCTC
-155 3.8 TAAAAGCATTCTCATTTAT
Enterobacter sp. 638 Ent638_2486 -103 3.7 TATTTTAATAAATAATATC
-97 3.6 AATAAATAATATCTTTATT
Erwinia amylovora ATCC 49946 EAM_2940 -131 4.4 TGGAATGATTATCAATTAC
Yersinia pestis KIM y2524 -93 4.4 AATAATGTGAATGATTATC
-87 4.1 GTGAATGATTATCATGATG
Serratia proteamaculans 568 Spro_1942 -174 4.5 GAAAATAGTTATCATAATT
-168 4 AGTTATCATAATTATTTAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2473 -158 4.6 TTAAATGATAATGAATATC
-152 4.8 GATAATGAATATCAATAGC
Proteus mirabilis HI4320 PMI1007 -184 4.7 GTTAATGATAATCAATTCC
-178 4.1 GATAATCAATTCCATTAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu2689 -147 4.4 TTAAATGAGATTCATTTTC
-141 4.4 GAGATTCATTTTCATTTTT
Position: -74
Score: 4.8
Sequence: AGAAATAGTTATCATTTTC
Locus tag: YP1649
YP1649 -74 4.8 AGAAATAGTTATCATTTTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fyuA
Ortholog function: TonB-dependent siderophore receptor
Citrobacter koseri ATCC BAA-895 CKO_00905 -74 4.6 AGAAATAGTTATCATTTTC
Citrobacter koseri ATCC BAA-895 CKO_01243 -74 4.6 AGAAATAGTTATCATTTTC
Yersinia pestis KIM y2404 -74 4.6 AGAAATAGTTATCATTTTC
Proteus mirabilis HI4320 PMI2596 -64 4.2 GCAAATGATATTAATTCGC
-58 4.4 GATATTAATTCGCATTAAC
Photorhabdus luminescens subsp. laumondii TTO1 plu2316 -160 5.1 ATTAATGAGAATCATTATC
-154 4.6 GAGAATCATTATCAATAGT
Position: -45
Score: 5.4
Sequence: GTTAATAATTATTATTATC
Locus tag: YP1654
YP1654 -45 5.4 GTTAATAATTATTATTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: irp2
Ortholog function: non-ribosomal peptide synthase (siderophore synthase)
Citrobacter koseri ATCC BAA-895 CKO_00911 -63 4.9 GTTAATAATTATTATTCTC
Yersinia pestis KIM y2399 -63 5.1 GTTAATAATTATTATTATC
Position: -90
Score: 5
Sequence: GTGAATAATAACCATTATC
Position: -84
Score: 4.8
Sequence: AATAACCATTATCAATAAC
Locus tag: YP1655
YP1655 -90 5 GTGAATAATAACCATTATC
-84 4.8 AATAACCATTATCAATAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybtA
Ortholog function: AraC-type transcriptional regulator for yersiniabactin uptake and biosynthetic genes
Citrobacter koseri ATCC BAA-895 CKO_00912 -90 4.7 GTGAATAATAACCATTATC
-84 4.6 AATAACCATTATCAATAAC
Citrobacter koseri ATCC BAA-895 CKO_01249 -90 4.7 GTGAATAATAACCATTATC
-84 4.6 AATAACCATTATCAATAAC
Yersinia pestis KIM y2398 -90 4.7 GTGAATAATAACCATTATC
-84 4.6 AATAACCATTATCAATAAC
Position: -95
Score: 5
Sequence: GATAATGGTTATTATTCAC
Locus tag: YP1656
YP1656 -95 5 GATAATGGTTATTATTCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybtP
Ortholog function: yersiniabactin-iron ABC transporter, ATPase/permease components
Citrobacter koseri ATCC BAA-895 CKO_01250 -191 4.4 GTTATTGATAATGGTTATT
-185 4.7 GATAATGGTTATTATTCAC
Citrobacter koseri ATCC BAA-895 CKO_00913 -191 4.4 GTTATTGATAATGGTTATT
-185 4.7 GATAATGGTTATTATTCAC
Yersinia pestis KIM y2397 -101 4.4 GTTATTGATAATGGTTATT
-95 4.7 GATAATGGTTATTATTCAC
Position: -129
Score: 4.6
Sequence: TGAAGTGATAATTATTATC
Position: -123
Score: 4.9
Sequence: GATAATTATTATCACTACC
Locus tag: YP2191
YP2191 -129 4.6 TGAAGTGATAATTATTATC
-123 4.9 GATAATTATTATCACTACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sufA
Ortholog function: scaffold protein for iron-sulfur cluster assembly
Escherichia coli str. K-12 substr. MG1655 b1684 -65 4.4 TGAACTGATAATCATTATC
-59 5.1 GATAATCATTATCACTAAC
Salmonella typhimurium LT2 STM1369 -66 4.7 TGAAGTGATAATCATTATC
-60 5.1 GATAATCATTATCACTAAC
Citrobacter koseri ATCC BAA-895 CKO_01717 -66 4.7 TGAAGTGATAATCATTATC
-60 5.1 GATAATCATTATCACTAAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02141 -66 4.7 TGAAGTGATAATCATTATC
-60 5.1 GATAATCATTATCACTAAC
Enterobacter sp. 638 Ent638_1760 -67 4.4 TGAAGTGATAATCGTTATC
-61 4.7 GATAATCGTTATCACTAAC
Yersinia pestis KIM y1934 -129 4.5 TGAAGTGATAATTATTATC
-123 4.8 GATAATTATTATCACTACC
Serratia proteamaculans 568 Spro_2179 -77 4.4 TGAAGTGATAATCGTTATC
-71 4.7 GATAATCGTTATCACTAAC
Proteus mirabilis HI4320 PMI1416 -66 4.4 GATAAGGGTTATCATTACC
-60 4 GGTTATCATTACCATTAGA
Photorhabdus luminescens subsp. laumondii TTO1 plu2622 -87 4.4 GATAAAGGTTATCATTACC
-81 4.3 GGTTATCATTACCATTATA
Position: -45
Score: 4.2
Sequence: GCTAATGGTATTGATAATC
Position: -39
Score: 5.4
Sequence: GGTATTGATAATCATTTTC
Position: -33
Score: 4.9
Sequence: GATAATCATTTTCATTTGT
Locus tag: YP2227
YP2227 -45 4.2 GCTAATGGTATTGATAATC
-39 5.4 GGTATTGATAATCATTTTC
-33 4.9 GATAATCATTTTCATTTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sitA
Ortholog function: iron ABC transporter, periplasmic substrate-binding protein
Salmonella typhimurium LT2 STM2861 -99 4.5 GCAAATAAGAATTATTTTC
-93 4.2 AAGAATTATTTTCATTTAT
Citrobacter koseri ATCC BAA-895 CKO_04090 -84 4.5 GTAAATAAGAATTATTTTC
-78 4.2 AAGAATTATTTTCATTTAT
Citrobacter koseri ATCC BAA-895 CKO_00940 -111 4.1 GATAAAGATAATTTTTCTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03078 -99 4.5 GCAAATAAGAATTATTTTC
-93 4.2 AAGAATTATTTTCATTTAT
Enterobacter sp. 638 Ent638_1111 -98 4.9 TTTAATGATAATTATTTTC
-92 4.5 GATAATTATTTTCATTTAA
Yersinia pestis KIM y1897 -39 5.2 GGTATTGATAATCATTTTC
-33 4.7 GATAATCATTTTCATTTGT
Serratia proteamaculans 568 Spro_2133 -41 5.4 GATATTGATAATCATTTTC
-35 4.6 GATAATCATTTTCATTTGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2392 -53 5.1 GATATTGATAATTATTCTC
Proteus mirabilis HI4320 PMI1027 -63 4.2 TGAAATGATATTGATAATC
-57 5.5 GATATTGATAATCATTATC
Photorhabdus luminescens subsp. laumondii TTO1 plu2672 -49 5.2 GATATTGATAATCGTTATC
-43 4.5 GATAATCGTTATCATATAC
Position: -108
Score: 5.1
Sequence: AACAATGATAATCATTTTT
Position: -102
Score: 4.9
Sequence: GATAATCATTTTTATTACC
Locus tag: YP2584
YP2584 -108 5.1 AACAATGATAATCATTTTT
-102 4.9 GATAATCATTTTTATTACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sfuA
Ortholog function: iron(III) ABC transporter, periplasmic protein
Yersinia pestis KIM y1526 -108 4.8 AACAATGATAATCATTTTT
-102 4.7 GATAATCATTTTTATTACC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3137 -169 4.2 CGAAATAATAATAACTATC
-163 4.7 AATAATAACTATCATTATT
-157 4.4 AACTATCATTATTATTATC
Position: -72
Score: 4.7
Sequence: GATAATTATTCTCATTTAA
Locus tag: YP2607
YP2607 -72 4.7 GATAATTATTCTCATTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mntH
Ortholog function: Mn2+/Fe2+ transporter, NRAMP family
Escherichia coli str. K-12 substr. MG1655 b2392 -68 4.7 GAATTTGATAATCATTCTC
-62 4.2 GATAATCATTCTCGTTTGG
Salmonella typhimurium LT2 STM2408 -68 4.5 GCACTTGATAATCATTATC
-62 4.8 GATAATCATTATCAATAAA
Citrobacter koseri ATCC BAA-895 CKO_00404 -50 4.3 GCACTTGATAATCATTCTC
-44 4.5 GATAATCATTCTCAATAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02743 -68 4.3 GAACTTGATAATCATTCGC
-62 4.3 GATAATCATTCGCATTTTG
Enterobacter sp. 638 Ent638_2926 -67 4.8 GATCTTGATAATCATTCTC
-61 4.8 GATAATCATTCTCATTTTG
Yersinia pestis KIM y1500 -78 4 GCGCTTGATAATTATTCTC
-72 4.6 GATAATTATTCTCATTTAA
Serratia proteamaculans 568 Spro_3415 -66 4.3 GCACTTGATAATTATTATC
-60 5.2 GATAATTATTATCATTTAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0843 -63 4.5 GCACTTGATAATCATTATC
-57 5.2 GATAATCATTATCATTTTT
Edwardsiella tarda EIB202 ETAE_1142 -134 4.5 GCAGTTGATAATCATTATC
Position: -71
Score: 4.9
Sequence: ACTAATGATAATTACTATC
Locus tag: YP2997
YP2997 -71 4.9 ACTAATGATAATTACTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: exbB
Ortholog function: TonB-dependent siderophore transporter component ExbB
Escherichia coli str. K-12 substr. MG1655 b3006 -82 4.1 AGTAATGAGAACGACTATC
Salmonella typhimurium LT2 STM3159 -82 4.1 AGTAATGAGAACGACTATC
Citrobacter koseri ATCC BAA-895 CKO_04401 -97 4.1 AGTAATGAGAACGACTATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03426 -97 4.3 ACTAATGAGAACCACTATC
Enterobacter sp. 638 Ent638_3417 -97 4.3 ACTAATGAGAACCACTATC
Yersinia pestis KIM y3495 -71 4.8 ACTAATGATAATTACTATC
Serratia proteamaculans 568 Spro_4211 -94 4.4 AATAATGAGAACTACTATC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0358 -206 4.3 AATAATGAGAACGACTATC
Proteus mirabilis HI4320 PMI0029 -170 4.8 AGTAATGATAATTACTATC
Photorhabdus luminescens subsp. laumondii TTO1 plu3941 -98 5.1 AATAATGATAATTACTATC
Position: -340
Score: 5.6
Sequence: GATTATGATAATCATTATC
Position: -334
Score: 5.2
Sequence: GATAATCATTATCAATAGC
Locus tag: YP3126
YP3126 -340 5.6 GATTATGATAATCATTATC
-334 5.2 GATAATCATTATCAATAGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: hasR
Ortholog function: TonB-dependent heme receptor
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1538 -102 5 GGTAATGATTTTTATTATC
-96 4.8 GATTTTTATTATCATTTTC
-90 4.1 TATTATCATTTTCATTAAG
Position: -26
Score: 5
Sequence: GGTAATAAAAATCATTAGC
Position: -20
Score: 4.5
Sequence: AAAAATCATTAGCATTACT
Locus tag: YP3385
YP3385 -26 5 GGTAATAAAAATCATTAGC
-20 4.5 AAAAATCATTAGCATTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fatB
Ortholog function: iron ABC transporter, substrate-binding protein
Yersinia pestis KIM y4043 -26 4.8 GGTAATAAAAATCATTAGC
-20 4.2 AAAAATCATTAGCATTACT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2564 -86 4.2 GCGAATGATAATTAAATTC
-80 4.1 GATAATTAAATTCTTTATT
Proteus mirabilis HI4320 PMI2957 -121 4.1 GTGAATTAGTATCATTACT
Position: -187
Score: 5
Sequence: GAAAATGATAATCGTTTGC
Locus tag: YP3422
YP3422 -187 5 GAAAATGATAATCGTTTGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: y3404
Ortholog function: TonB-dependent receptor
Yersinia pestis KIM y3404 -187 4.9 GAAAATGATAATCGTTTGC
Position: -95
Score: 4.9
Sequence: AATAGTGGTTATCATTATC
Locus tag: YP3451
YP3451 -95 4.9 AATAGTGGTTATCATTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: Spro_0923
Ortholog function: major facilitator superfamily MFS_1
Serratia proteamaculans 568 Spro_0923 -93 4.3 AATAATATTTATTGTTATC
Position: -50
Score: 4.3
Sequence: ACAAACGATTTTGATTATC
Position: -44
Score: 4.9
Sequence: GATTTTGATTATCATTCGC
Locus tag: YP_3486
YP_3486 -50 4.3 ACAAACGATTTTGATTATC
-44 4.9 GATTTTGATTATCATTCGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: Spro_1015
Ortholog function: iron(III) ABC transporter, periplasmic protein
Yersinia pestis KIM y3342 -41 4.2 ACAAACGATTTTGATTATC
-35 4.6 GATTTTGATTATCATTCGC
Serratia proteamaculans 568 Spro_1015 -52 4.3 GCTAATGAGAGTGATTATC
Position: 2
Score: 5
Sequence: GATATTGGTTATGATTATC
Position: 8
Score: 5.4
Sequence: GGTTATGATTATCATTATC
Locus tag: YP3755
YP3755 2 5 GATATTGGTTATGATTATC
8 5.4 GGTTATGATTATCATTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjjZ
Ortholog function: putative membrane protein
Escherichia coli str. K-12 substr. MG1655 b4567 -60 4.4 GCAAATGATAAAAATTATC
-37 5.2 GATATTGGTTATCATTATC
Salmonella typhimurium LT2 STM4552 -37 5.2 GATATTGGTTATCATTATC
-31 4.2 GGTTATCATTATCAATTCC
Citrobacter koseri ATCC BAA-895 CKO_03427 2 4.9 GCTATTGGTTATCATTATC
8 4.1 GGTTATCATTATCGGTATC
Enterobacter sp. 638 Ent638_0529 -37 5.2 GATATTGGTTATCATTATC
-31 4 GGTTATCATTATCATATTG
Erwinia amylovora ATCC 49946 EAM_0565 -70 4.3 CAAAGTGATAATGATTAAC
-64 4.3 GATAATGATTAACATATGC
-47 4.9 GCTATTGGTAATCATTATC
-41 4.8 GGTAATCATTATCATTTAT
Yersinia pestis KIM y3754 -4 4.9 GATATTGGTTATGATTATC
2 5.2 GGTTATGATTATCATTATC
Serratia proteamaculans 568 Spro_0646 -39 4.7 GATATTAGTTCTCATTATC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0738 -89 5 GATATTAGTTATCATTATC
-83 4.5 AGTTATCATTATCATTTTT
Proteus mirabilis HI4320 PMI2497 -27 5.3 AATAATGAAAATCATTATC
-21 5.2 GAAAATCATTATCATTAAC
Photorhabdus luminescens subsp. laumondii TTO1 plu4253 -92 5.2 GATATTGGTAATCATTATC
-86 4.7 GGTAATCATTATCATTTGT
Position: -104
Score: 4.6
Sequence: AGGTTTGATAATCATTTTC
Position: -98
Score: 5.2
Sequence: GATAATCATTTTCAATATC
Locus tag: YP3972
YP3972 -104 4.6 AGGTTTGATAATCATTTTC
-98 5.2 GATAATCATTTTCAATATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sodA
Ortholog function: manganese/iron superoxide dismutase
Escherichia coli str. K-12 substr. MG1655 b3908 -99 4.7 GGCATTGATAATCATTTTC
-93 5 GATAATCATTTTCAATATC
Salmonella typhimurium LT2 STM4055 -99 4.7 GGCATTGATAATCATTTTC
-93 5 GATAATCATTTTCAATATC
Citrobacter koseri ATCC BAA-895 CKO_03093 -88 4.3 GGCATTGATAAGCATTTTC
-82 4.4 GATAAGCATTTTCAATATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04217 -88 4.3 GGCATTGATAAGCATTTTC
-82 4 GATAAGCATTTTCAATACC
Enterobacter sp. 638 Ent638_4063 -100 4.7 GGCATTGATAATCATTTTC
-94 5 GATAATCATTTTCAATATC
Yersinia pestis KIM y4080 -104 4.4 AGGTTTGATAATCATTTTC
-98 5 GATAATCATTTTCAATATC
Serratia proteamaculans 568 Spro_0081 -105 4.7 GGCATTGATAATCATTTTC
-99 5 GATAATCATTTTCAATATC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0092 -105 4.9 AATAATCATTTTCAATATC
Proteus mirabilis HI4320 PMI3036 -95 4.6 GGATATGATAATGATTTTC
-89 5.2 GATAATGATTTTCATTAAC
Photorhabdus luminescens subsp. laumondii TTO1 plu0075 -102 4.3 GGTATTGATAAGCATTTCC
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