Propagation of Crp regulog to Klebsiella variicola At-22
| Source regulog: | Crp - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Klebsiella variicola At-22 |
| Orthologous TF(s) | Kvar_0358 |
| Regulated genes | 256 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -56
Score: 4.1 Sequence: TTTTTTGAGCGGAATCGCGTTA
Locus tag: Kvar_0009
|
||||
| Kvar_0009 | -56 | 4.1 | TTTTTTGAGCGGAATCGCGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yidA | ||||
| Ortholog function: Phosphatase YidA | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3697 | -56 | 4.1 | ATTTTTGAGCGGAATCGCGTTA |
| Salmonella typhimurium LT2 | STM3831 | -56 | 4.1 | TTTTTTGAGCGGAATCGCGTTA |
| Citrobacter koseri ATCC BAA-895 | CKO_00044 | -56 | 4.1 | TTTTTTGAGCGGAATCGCGTTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04101 | -56 | 4.1 | TTTTTTGAGCGGAATCGCGTTA |
|
Position: -152
Score: 3.9 Sequence: TAATTTGACCCATAGCATATTC
Position: -122
Score: 4 Sequence: ATTTTAGAGCTAAATCACCTTT
Locus tag: Kvar_0024
|
||||
| Kvar_0024 | -152 | 3.9 | TAATTTGACCCATAGCATATTC | |
| -122 | 4 | ATTTTAGAGCTAAATCACCTTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dsdX | ||||
| Ortholog function: DsdX permease | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2365 | -154 | 4.4 | TAAAGTGAACCATATCTCAATT |
| Salmonella typhimurium LT2 | STM3801 | -153 | 4 | TAAAATGAACCATATCGCAAAA |
| -123 | 4.2 | ATATTAGATGGAAATCACATAG | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00020 | -124 | 4 | TTATTGGATGCAAATCACCCTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04080 | -152 | 4.3 | TAATTTGACCCATAGCATATTT |
| -122 | 3.7 | CTTTTAGAGCTAAATCACCTTT | ||
|
Position: -124
Score: 4.3 Sequence: AAAGGTGATTTAGCTCTAAAAT
Position: -94
Score: 3.6 Sequence: GAATATGCTATGGGTCAAATTA
Locus tag: Kvar_0025
|
||||
| Kvar_0025 | -124 | 4.3 | AAAGGTGATTTAGCTCTAAAAT | |
| -94 | 3.6 | GAATATGCTATGGGTCAAATTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dsdC | ||||
| Ortholog function: DNA-binding transcriptional dual regulator | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2364 | -115 | 3.9 | TGGAGTGATTTACATCTAAAAA |
| -85 | 4.6 | AATTGAGATATGGTTCACTTTA | ||
| Salmonella typhimurium LT2 | STM3800 | -142 | 3.8 | TGATGTAAATTGAATCAACTAT |
| -124 | 4.5 | CTATGTGATTTCCATCTAATAT | ||
| -94 | 4.2 | TTTTGCGATATGGTTCATTTTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00019 | -32 | 3.9 | AAGGGTGATTTGCATCCAATAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04079 | -125 | 3.9 | AAAGGTGATTTAGCTCTAAAAG |
| -95 | 4.2 | AAATATGCTATGGGTCAAATTA | ||
| Serratia proteamaculans 568 | Spro_2451 | -76 | 3.6 | TTTAGCGACATGGGTCAACTTT |
| Proteus mirabilis HI4320 | PMI0184 | -199 | 3.6 | TATTGTTAAACATATTGAATAT |
| -117 | 4.4 | ATAGGTGATCAGATGCACAAAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1968 | -124 | 4.4 | TTCAGTGATACCGATCAAAATT |
| -94 | 4.5 | ATTTGCGATTTAAATCACTAAA | ||
|
Position: -143
Score: 3.7 Sequence: TGATGCGATTTAGCATACAAAA
Locus tag: Kvar_0088
|
||||
| Kvar_0088 | -143 | 3.7 | TGATGCGATTTAGCATACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uraA1 | ||||
| Ortholog function: Xanthine permease | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04013 | -143 | 3.7 | TGATGCGATTTAGCATACAAAA |
| Enterobacter sp. 638 | Ent638_0073 | -169 | 3.7 | CAAAATGATTCTTCGCACATAT |
| Yersinia pestis KIM | y0107 | -60 | 4 | AAATGTGAGTTAGCAAAAAAAT |
| Edwardsiella tarda EIB202 | ETAE_0025 | -56 | 3.7 | TTTTGTGGCGCAGATCATTAAA |
| Proteus mirabilis HI4320 | PMI2868 | -54 | 3.7 | TTTTGTGGCGCAGATCATTAAA |
|
Position: -145
Score: 4 Sequence: TTTCTTGACGCGGTACACACAT
Locus tag: Kvar_0091
|
||||
| Kvar_0091 | -145 | 4 | TTTCTTGACGCGGTACACACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpF | ||||
| Ortholog function: facilitator for glycerol uptake | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04010 | -145 | 3.7 | TTTCTTGACGAGACACACACAT |
| Enterobacter sp. 638 | Ent638_4046 | -213 | 4.4 | TGAAATGATTCAGCTCACATTT |
| -147 | 3.8 | TTTATTGACACAGCACACACAT | ||
|
Position: -55
Score: 4.9 Sequence: AATCGTGATCCTGCGCACAAAT
Locus tag: Kvar_0107
|
||||
| Kvar_0107 | -55 | 4.9 | AATCGTGATCCTGCGCACAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yicG | ||||
| Ortholog function: Putative inner membrane protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3646 | -58 | 4.4 | AATCGTGACAATGCGCACAAAT |
| Salmonella typhimurium LT2 | STM3738 | -210 | 3.7 | TTAAATTATCTAAGTCAAAATA |
| -147 | 3.8 | TTTATTGATATTTATAATAAAT | ||
| -58 | 4.9 | AATCGTGATACAGCGCACAAAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_05103 | -58 | 4.7 | AATCGTGATATTACGCACAAAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03994 | -55 | 4.9 | AATCGTGATCCTGCGCACAAAT |
| Enterobacter sp. 638 | Ent638_0094 | -55 | 3.9 | AATCGTGATATGTTCTGCAAAA |
| Edwardsiella tarda EIB202 | ETAE_0032 | -180 | 3.8 | AAAACTAATCTATATCAAATAT |
|
Position: -325
Score: 4.8 Sequence: CTTTGTGATCAAAATCACAAAC
Position: -281
Score: 5.1 Sequence: AATTGTGACAAATATCACACAA
Position: -164
Score: 5 Sequence: TCATGTGATCCGTATCACACAA
Locus tag: Kvar_0159
|
||||
| Kvar_0159 | -325 | 4.8 | CTTTGTGATCAAAATCACAAAC | |
| -281 | 5.1 | AATTGTGACAAATATCACACAA | ||
| -164 | 5 | TCATGTGATCCGTATCACACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtlA | ||||
| Ortholog function: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3599 | -206 | 4.5 | TTTTGTGATGAACGTCACGTCA |
| -162 | 5.4 | TTATGTGATTGATATCACACAA | ||
| -113 | 3.3 | TTCAGTGCCAGATTTCGCAGTA | ||
| Salmonella typhimurium LT2 | STM3685 | -207 | 4.8 | CTTTGTGATCAATATCACATCA |
| -163 | 5.4 | TTATGTGACGCAAATCACATAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_05054 | -203 | 5.2 | TTTTGTGATCAATATCACATCA |
| -159 | 5 | TCATGTGATCCAAATCACACAA | ||
| -110 | 3.4 | TTCAGTGCCAGATTTCGCACTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03942 | -208 | 4.9 | TTTTGTGATCATCATCACTAAA |
| -164 | 5.2 | TCATGTGATCCAAATCACATAA | ||
| -115 | 3.4 | TTCAGTGCCAGATTTCGCACTA | ||
| Enterobacter sp. 638 | Ent638_0136 | -224 | 3.4 | TATTTTTTTCATACTCTCATTT |
| -205 | 4.8 | TTTTGTGATGGCGATCACCTCA | ||
| -161 | 5.1 | TTGCGTGATGCAGATCACACAA | ||
| Erwinia amylovora ATCC 49946 | EAM_3416 | -229 | 3.3 | CATTGCGAATATCTTTACACTT |
| -210 | 3.9 | CTTCGTGACTCATGTCACTAAA | ||
| -166 | 4.8 | TTAAGTGACCCGCATCACACTT | ||
| -95 | 3.2 | CGTTTTGATCGTGATCCCTCAA | ||
| -34 | 3.5 | ACATGAGATTTGCATCATTAAT | ||
| Yersinia pestis KIM | y4087 | -223 | 4.6 | AGATGTGATCTTAATCAACAAA |
| -179 | 4.5 | TTGTGTGACTTTCGTCACGAAA | ||
| Serratia proteamaculans 568 | Spro_0072 | -195 | 5.2 | AAATGTGATGTATATCACTATA |
| -151 | 4.5 | GTTGGTGATCTGCATCACAAAA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0087 | -230 | 5.1 | TTTTGTGAAGTAAATCACCTAT |
| -186 | 4.5 | TTGTGTGATTTTTGTCACGTTG | ||
|
Position: -146
Score: 3.7 Sequence: AAATGCTAGCTTCGTCTCATTT
Locus tag: Kvar_0168
|
||||
| Kvar_0168 | -146 | 3.7 | AAATGCTAGCTTCGTCTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malS | ||||
| Ortholog function: periplasmic alpha-amylase precursor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3571 | -269 | 4.2 | ATTTGAGAGTTGAATCTCAAAT |
| -152 | 4.1 | AAATGTGGGGGTTATCGCAAAA | ||
| -118 | 3.6 | TTGCGCGAGATCGCTCACCCTT | ||
| Salmonella typhimurium LT2 | STM3664 | -148 | 4.5 | AAATGTGGTGCTTATCGCAAAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03935 | -146 | 3.7 | AAATGCTAGCTTCGTCTCATTT |
| Enterobacter sp. 638 | Ent638_0150 | -264 | 4.2 | AATTGAGAGCGGAATCTCAAAT |
| -147 | 4.1 | AATTGTGTGCGATATCGCAGAT | ||
| -117 | 3.8 | AATTTTGCGCGAGATCACTCAT | ||
| Serratia proteamaculans 568 | Spro_0054 | -163 | 4 | CATTGTAATATAGATTAAAAAA |
|
Position: -270
Score: 4.1 Sequence: AAACGTGCGCCAGCTCGCAAAA
Position: -177
Score: 3.8 Sequence: AAATACGATCGCCGTCATAATT
Locus tag: Kvar_0173
|
||||
| Kvar_0173 | -270 | 4.1 | AAACGTGCGCCAGCTCGCAAAA | |
| -177 | 3.8 | AAATACGATCGCCGTCATAATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: xylF | ||||
| Ortholog function: Xylose ABC transporter, periplasmic xylose-binding protein XylF | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3566 | -253 | 4.2 | AAGTGTGCGCTCGCTCGCAAAA |
| -163 | 3.7 | AAGTAAGATCTCGGTCATAAAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_05022 | -254 | 4.1 | AAGTGTGCGCCGCCTCGCAAAA |
| -162 | 3.8 | AAGTACGATCTCGGTCATAATT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03930 | -234 | 3.8 | AAATACGATCGCCGTCATAATT |
| Enterobacter sp. 638 | Ent638_0155 | -264 | 3.9 | AAACGTGCGCTGGCTCCCAAAA |
| Yersinia pestis KIM | y4056 | -264 | 4.8 | AATTGTGGTGTAGATCTCATAA |
| -160 | 4.2 | AAACATGATCGTTATCATAAAA | ||
| Serratia proteamaculans 568 | Spro_0099 | -259 | 4.4 | AAATGTGCGACAGATCTCATAA |
| -166 | 3.7 | AAGCATGACCGCCATCATAAAA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0098 | -272 | 4.5 | AAATATGACCCGCATCAAAAAA |
|
Position: -350
Score: 4.1 Sequence: AATTATGACGGCGATCGTATTT
Position: -257
Score: 4.1 Sequence: TTTTGCGAGCTGGCGCACGTTT
Locus tag: Kvar_0174
|
||||
| Kvar_0174 | -350 | 4.1 | AATTATGACGGCGATCGTATTT | |
| -257 | 4.1 | TTTTGCGAGCTGGCGCACGTTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: xylA | ||||
| Ortholog function: Xylose isomerase (EC 5.3.1.5) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3565 | -224 | 3.9 | ATTTATGACCGAGATCTTACTT |
| -134 | 4.2 | TTTTGCGAGCGAGCGCACACTT | ||
| Salmonella typhimurium LT2 | STM3661 | -260 | 3.9 | TTATGCGAAATTCATCACAGCA |
| -133 | 4.4 | TTTTGAGAGCCAGAGCACATTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_05021 | -214 | 4.1 | AATTATGACCGAGATCGTACTT |
| -122 | 4.2 | TTTTGCGAGGCGGCGCACACTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03929 | -234 | 4.1 | TTTTGCGAGCTGGCGCACGTTT |
| Enterobacter sp. 638 | Ent638_0156 | -231 | 3.8 | ATTTATGACCGTGATCTGATTT |
| -135 | 3.9 | TTTTGGGAGCCAGCGCACGTTT | ||
| Yersinia pestis KIM | y4057 | -220 | 4.6 | TTATGAGATCTACACCACAATT |
| Serratia proteamaculans 568 | Spro_0098 | -222 | 3.9 | TTTTATGATGGCGGTCATGCTT |
| -129 | 4.6 | TTATGAGATCTGTCGCACATTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0097 | -223 | 4.7 | TTTTTTGATGCGGGTCATATTT |
| -135 | 4.4 | TTTTGCGACACAGCGCACATTT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2275 | -251 | 4.6 | ATTTATGAGATAAATCACACAA |
|
Position: -35
Score: 3.8 Sequence: ATATGCAAACAACATCACAGTT
Locus tag: Kvar_0201
|
||||
| Kvar_0201 | -35 | 3.8 | ATATGCAAACAACATCACAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dppA | ||||
| Ortholog function: dipeptide ABC transporter, substrate-binding protein | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04994 | -121 | 3.8 | TTATGTGAACGGAATCCCCATC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03899 | -62 | 4 | ATATGCAAACAACATCACAATT |
| Yersinia pestis KIM | y3825 | -211 | 3.9 | AGATGTGAGCCATATAACCTCT |
| Serratia proteamaculans 568 | Spro_0138 | -271 | 3.8 | TTGTTTGCTGTTTCTCACAGTC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0300 | -223 | 3.7 | AAATGTGCGCATTGTCATGTTT |
|
Position: -143
Score: 4.2 Sequence: TTGTGCGAGTCAGCTCAAATAT
Locus tag: Kvar_0223
|
||||
| Kvar_0223 | -143 | 4.2 | TTGTGCGAGTCAGCTCAAATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dctA | ||||
| Ortholog function: C4-dicarboxylate transport protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3528 | -143 | 4.1 | TTGTGCGAGCCAGCTCAAACTT |
| Salmonella typhimurium LT2 | STM3614 | -145 | 4.1 | TTGTGCGAGCCAGCTCAAACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_04970 | -145 | 4 | TTGTGCGAGCCAGCTCAAAGTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03878 | -143 | 3.9 | TTGTGCGAGTCAGCTCAAAGAT |
| Erwinia amylovora ATCC 49946 | EAM_3380 | -134 | 4.4 | TGAAGTGATTCAGCTCATAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4362 | -157 | 3.8 | TGACGTGATTCAGCTCTTGTTT |
| Edwardsiella tarda EIB202 | ETAE_3379 | -155 | 3.6 | TTATGCGTTTCAGCTCATAGAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3205 | -176 | 4.9 | TTATGTGATCTATATCTTAAAA |
|
Position: -154
Score: 4.3 Sequence: TTGTGTGAAGCATTTCATAGAA
Locus tag: Kvar_0227
|
||||
| Kvar_0227 | -154 | 4.3 | TTGTGTGAAGCATTTCATAGAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhjE | ||||
| Ortholog function: Inner membrane metabolite transport protein YhjE | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3523 | -155 | 4.5 | TTATGTGAAGCATTTCATAGAA |
| Salmonella typhimurium LT2 | STM3609 | -154 | 4.2 | TTATGTGAAGCATTTCATAGAC |
| Citrobacter koseri ATCC BAA-895 | CKO_04963 | -155 | 4 | TTGTGTGAAGCATTTCATAGAC |
| -94 | 3.7 | TTATTTGAGCGAAATCCCGCTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03874 | -154 | 4.3 | TTGTGTGAAGCATTTCATAGAA |
| Enterobacter sp. 638 | Ent638_3920 | -155 | 4.2 | AACTGTGAAGCATTTCATAGAA |
| Erwinia amylovora ATCC 49946 | EAM_3376 | -134 | 3.6 | AAATATGCCGTATTGAACATTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0769 | -222 | 4.7 | AATTGTGTGCGATCTCACATAT |
|
Position: -303
Score: 4.3 Sequence: GAGTGCGATTCCGATCACATTT
Locus tag: Kvar_0241
|
||||
| Kvar_0241 | -303 | 4.3 | GAGTGCGATTCCGATCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uspA3 | ||||
| Ortholog function: Universal stress protein A | ||||
| Enterobacter sp. 638 | Ent638_3909 | -195 | 3.8 | AAAGTCGATCGGGTTCACGTTT |
| Yersinia pestis KIM | y3859 | -151 | 3.6 | ATTAGTGATCATTGTCAAAACC |
| Serratia proteamaculans 568 | Spro_4691 | -123 | 4 | CAGTGTGATCGCCTCAACATAT |
| Proteus mirabilis HI4320 | PMI3009 | -290 | 3.6 | AGTTGTTCGCTTTTTCAAAAAA |
| -113 | 3.8 | AGTTGTGATCAAGGCAACATCT | ||
|
Position: -88
Score: 3.3 Sequence: TATTTTTCTGTAATTCGAAGAT
Locus tag: Kvar_0287
|
||||
| Kvar_0287 | -88 | 3.3 | TATTTTTCTGTAATTCGAAGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ugpB | ||||
| Ortholog function: Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3453 | -182 | 3.6 | ATCCGTGCCCCATCTCCCATTT |
| Salmonella typhimurium LT2 | STM3557 | -184 | 3.5 | ATCCGTGCCGTAGCTCCCACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_04874 | -185 | 3.3 | TATTTTTCTGTCATTCGCGCAT |
| -162 | 3.2 | TCATGTTACCTCGCGAGCATAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03813 | -88 | 3.4 | TATTTTTCTGTAATTCGAACAT |
| Enterobacter sp. 638 | Ent638_3856 | -162 | 3.5 | AGTTATTATTCCCGCCACATTA |
| -58 | 3.2 | TCATGTTACCTCGCGAGCATAA | ||
| Erwinia amylovora ATCC 49946 | EAM_3285 | -171 | 3.9 | GTGTGTGATGCCGTTAACACAG |
| Yersinia pestis KIM | y0434 | -72 | 3.5 | AAAACTGATTTATTTCGCTCAT |
| -41 | 4.1 | TTTTTTGATGTGAGCCACACAG | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2429 | -145 | 3.5 | TATCGCGATACAGTTCATCACT |
| Edwardsiella tarda EIB202 | ETAE_3321 | -63 | 3.4 | CAATATGTTGTTTATCACTCAA |
|
Position: -174
Score: 4.7 Sequence: AAGTTTGAAGTAGATCACACAT
Locus tag: Kvar_0299
|
||||
| Kvar_0299 | -174 | 4.7 | AAGTTTGAAGTAGATCACACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gntK | ||||
| Ortholog function: gluconate kinase 1 | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03801 | -129 | 4.7 | AAGTTTGAAGTAGATCACACAT |
|
Position: -58
Score: 3.7 Sequence: TATAGTGAGCGATATCGAGCAT
Locus tag: Kvar_0309
|
||||
| Kvar_0309 | -58 | 3.7 | TATAGTGAGCGATATCGAGCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpD | ||||
| Ortholog function: glycerol-3-phosphate dehydrogenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3426 | -116 | 4.4 | TAATGTTATACATATCACTCTA |
| Salmonella typhimurium LT2 | STM3526 | -116 | 4.4 | TAATGTTATACATATCACTCTA |
| Citrobacter koseri ATCC BAA-895 | CKO_04845 | -116 | 4.5 | TAATGTTATATGTATCACTCTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03792 | -119 | 3.7 | ATATGTTACACCCATCACTTCA |
| -58 | 3.7 | TATAGTGAGCGATATCGAGCAT | ||
| Enterobacter sp. 638 | Ent638_3835 | -116 | 4.4 | TTATGTTATCTCTATCACTCAA |
| -55 | 4 | TATTATGAGCGATATCGAACAT | ||
| Erwinia amylovora ATCC 49946 | EAM_3265 | -124 | 4 | AGACGTTATCGGCATCACGCAT |
| Yersinia pestis KIM | y3891 | -129 | 4.4 | AAATGTTACCTCCATCACGCAT |
| Serratia proteamaculans 568 | Spro_4642 | -129 | 3.6 | AACTGTTACCTCTATCACGCCT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4141 | -144 | 4.3 | TAATGTGACAACTATCATCATA |
| -124 | 4.4 | TATTGTTAGCTTCATCACGCAT | ||
| Edwardsiella tarda EIB202 | ETAE_3312 | -124 | 4.3 | TTGTGTTATCCGCATCGCGTAA |
| Proteus mirabilis HI4320 | PMI2930 | -129 | 4.4 | AATTGTTATTTATATCACGCAG |
|
Position: -107
Score: 4.1 Sequence: TGGAGTGATGGGTGTAACATAT
Locus tag: Kvar_0310
|
||||
| Kvar_0310 | -107 | 4.1 | TGGAGTGATGGGTGTAACATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpE | ||||
| Ortholog function: thiosulfate sulfurtransferase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3425 | -95 | 4.7 | TAGAGTGATATGTATAACATTA |
| Salmonella typhimurium LT2 | STM3525 | -104 | 4.7 | TAGAGTGATATGTATAACATTA |
| Citrobacter koseri ATCC BAA-895 | CKO_04844 | -108 | 4.6 | TAGAGTGATACATATAACATTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03791 | -107 | 4.3 | TGAAGTGATGGGTGTAACATAT |
| Enterobacter sp. 638 | Ent638_3834 | -257 | 3.8 | ATGTTCGATATCGCTCATAATA |
| -196 | 4.6 | TTGAGTGATAGAGATAACATAA | ||
| Erwinia amylovora ATCC 49946 | EAM_3264 | -134 | 3.9 | ATGCGTGATGCCGATAACGTCT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0197 | -102 | 3.6 | TAACGTATTACTGATAACAAAT |
|
Position: -142
Score: 4.4 Sequence: ATTTGTGACATAGAGCAAATTC
Locus tag: Kvar_0313
|
||||
| Kvar_0313 | -142 | 4.4 | ATTTGTGACATAGAGCAAATTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malT | ||||
| Ortholog function: transcriptional regulator MalT | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3418 | -142 | 4.3 | AATTGTGACACAGTGCAAATTC |
| Salmonella typhimurium LT2 | STM3515 | -143 | 4.3 | AATTGTGACAGAGTGCAAATTC |
| Citrobacter koseri ATCC BAA-895 | CKO_04840 | -142 | 4.3 | AATTGTGACAGAGTGCAAATTC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03788 | -142 | 4.4 | ATTTGTGACATAGAGCAAATTC |
| Enterobacter sp. 638 | Ent638_3831 | -142 | 4.6 | AATTGTGACAGAGTGCAAATTA |
| Yersinia pestis KIM | y3900 | -202 | 4.6 | AATTGTGATCCGTAGCAACTTA |
| Serratia proteamaculans 568 | Spro_4637 | -203 | 4 | AAGTGTGATCAATAGCAATATA |
| Edwardsiella tarda EIB202 | ETAE_3303 | -212 | 3.8 | AAATGTGATCAGCCGCAATTTC |
|
Position: -242
Score: 3.7 Sequence: GAAAGCGATTACATTCACAATT
Position: -138
Score: 3.7 Sequence: CTTCGTGACAGGAGTCACCGTT
Locus tag: Kvar_0328
|
||||
| Kvar_0328 | -242 | 3.7 | GAAAGCGATTACATTCACAATT | |
| -138 | 3.7 | CTTCGTGACAGGAGTCACCGTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pck | ||||
| Ortholog function: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3403 | -240 | 4.2 | GAATGCGATTCCACTCACAATA |
| -137 | 4 | TTTCGTGACAGGAATCACGGAG | ||
| Salmonella typhimurium LT2 | STM3500 | -241 | 4 | GAATGCGATTACAGTCACATTA |
| -107 | 3.9 | AATCGTGATTTTGTCCAGATAC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04825 | -107 | 3.9 | AATCGTGATTTTGTCCAGATAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03773 | -242 | 3.7 | GAAAGCGATTACATTCACATTT |
| -138 | 3.7 | CTTCGTGACAGGAGTCACCGTT | ||
| Enterobacter sp. 638 | Ent638_3816 | -241 | 4.1 | GTATGCGATTACATTCACATTA |
| Yersinia pestis KIM | y3918 | -130 | 4.2 | ATTCGTGTTCCATCTCTCATAA |
| -80 | 3.8 | ATATTTGATAGCTATCGCTGTT | ||
| Serratia proteamaculans 568 | Spro_4617 | -80 | 4.1 | ATATTTGATACCTATCGCGGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4106 | -81 | 4 | TTTTATGATTGCTATCGCGGTT |
| Edwardsiella tarda EIB202 | ETAE_3277 | -82 | 3.9 | TTTTTTGATGACTATCTCGGTT |
| Proteus mirabilis HI4320 | PMI3015 | -131 | 4 | ATTTGTGCATTAGTTCTCGTTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0100 | -86 | 3.8 | TTTTTTGATAACTATCGCTGTT |
|
Position: -288
Score: 3.8 Sequence: TTGTGCGATACGCAACACGCTT
Locus tag: Kvar_0332
|
||||
| Kvar_0332 | -288 | 3.8 | TTGTGCGATACGCAACACGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: igaA | ||||
| Ortholog function: IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3398 | -288 | 3.6 | TTGTGCGATATCGGACACGCTT |
| -123 | 3.8 | TACTGTGATGTGCTTAATGATG | ||
| Salmonella typhimurium LT2 | STM3495 | -238 | 3.6 | TTATGTAACGTAATAAAAATTA |
| Citrobacter koseri ATCC BAA-895 | CKO_04821 | -290 | 3.9 | TTGTGCGATATACAGCACGGTT |
| -238 | 3.7 | TTATGTAACGTAGTAAAAATTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03769 | -282 | 3.8 | TTGTGCGATACGCAACACGCTT |
| Enterobacter sp. 638 | Ent638_3811 | -287 | 3.7 | TTGTGCGATATGACGCACGGTT |
| Yersinia pestis KIM | y3922 | -186 | 3.7 | TATTGTGACTGCGTTAGCTTTG |
|
Position: -54
Score: 4 Sequence: AAGCGTGTTGCGTATCGCACAA
Locus tag: Kvar_0333
|
||||
| Kvar_0333 | -54 | 4 | AAGCGTGTTGCGTATCGCACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nudE | ||||
| Ortholog function: ADP compounds hydrolase NudE (EC 3.6.1.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3397 | -53 | 3.7 | AAGCGTGTCCGATATCGCACAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04820 | -54 | 4.1 | AACCGTGCTGTATATCGCACAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03768 | -54 | 4 | AAGCGTGTTGCGTATCGCACAA |
| Enterobacter sp. 638 | Ent638_3810 | -55 | 3.6 | AACCGTGCGTCATATCGCACAA |
| Yersinia pestis KIM | y3923 | -247 | 4.5 | CAATGTGATCAAGTTCTAATAT |
| Serratia proteamaculans 568 | Spro_4612 | -135 | 4.4 | CAATGTGATCAAGATCGGATTT |
| Edwardsiella tarda EIB202 | ETAE_3268 | -116 | 3.6 | AAATATGAGCATCTGCGCACAA |
|
Position: -140
Score: 5.3 Sequence: AAGTGTGATGCATGTCACATTA
Locus tag: Kvar_0351
|
||||
| Kvar_0351 | -140 | 5.3 | AAGTGTGATGCATGTCACATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhfC | ||||
| Ortholog function: Predicted purine nucleoside transporter, MFS superfamily | ||||
| Salmonella typhimurium LT2 | STM3473 | -137 | 5 | TGATGTGACAAACATCACATTA |
| -84 | 3.8 | ATTATTTAAATGCATCACAAAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03750 | -140 | 5.3 | AAGCGTGATGCAGATCACATTA |
| -109 | 3.7 | AAAGATAACCCATTTCACAATA | ||
| Enterobacter sp. 638 | Ent638_3791 | -206 | 4.8 | AAAAGTGACTTAGATCACATTG |
| Serratia proteamaculans 568 | Spro_2681 | -82 | 4.3 | AATTGTGAACCCGATCACTTCA |
|
Position: -159
Score: 5.3 Sequence: TAATGTGACATGCATCACACTT
Locus tag: Kvar_0352
|
||||
| Kvar_0352 | -159 | 5.3 | TAATGTGACATGCATCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ppiA | ||||
| Ortholog function: Peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8) | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03749 | -189 | 3.9 | TATTGTGAAATGGGTTATCTTT |
| -158 | 5.3 | TAATGTGATCTGCATCACGCTT | ||
| Enterobacter sp. 638 | Ent638_3790 | -161 | 4.7 | CAATGTGATCTAAGTCACTTTT |
|
Position: -158
Score: 3.3 Sequence: TACATTGATGTACTGCATGTAT
Locus tag: Kvar_0358
|
||||
| Kvar_0358 | -158 | 3.3 | TACATTGATGTACTGCATGTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: crp | ||||
| Ortholog function: cyclic AMP receptor protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3357 | -154 | 3.3 | TACATTGATGTACTGCATGTAT |
| -136 | 3.3 | GTATGCAAAGGACGTCACATTA | ||
| Salmonella typhimurium LT2 | STM3466 | -159 | 3.1 | TACATTGACGTACTGCATGTAT |
| Citrobacter koseri ATCC BAA-895 | CKO_04777 | -160 | 3.1 | TACATTGACGTACTGCATGTAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03743 | -158 | 3.3 | TACATTGATGTACTGCATGTAT |
| Enterobacter sp. 638 | Ent638_3784 | -128 | 2.9 | AAACATTACAGGCTGCAAACAT |
| Yersinia pestis KIM | y3956 | -309 | 3 | AATTTAGACTACCCTTTCATTT |
| Serratia proteamaculans 568 | Spro_4580 | -121 | 3.5 | ATTTATGACACGCCTCAAAACC |
| Proteus mirabilis HI4320 | PMI2820 | -135 | 3.3 | TATTATAATCTATTCCTTATTA |
|
Position: -188
Score: 3.5 Sequence: TAATGTGAACTCCTCTGCATAC
Locus tag: Kvar_0360
|
||||
| Kvar_0360 | -188 | 3.5 | TAATGTGAACTCCTCTGCATAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhfA | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3356 | -187 | 4.2 | TAATGTGACGTCCTTTGCATAC |
| Salmonella typhimurium LT2 | STM3465 | -188 | 3.9 | TAATGTGATGTCCTCTGCATAC |
| Citrobacter koseri ATCC BAA-895 | CKO_04775 | -187 | 3.3 | GAATGTGATGTCCTCTGCATAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03742 | -188 | 3.5 | TAATGTGAACTCCTCTGCATAC |
| Serratia proteamaculans 568 | Spro_4579 | -280 | 3.3 | GGTTTTGAGGCGTGTCATAAAT |
|
Position: -220
Score: 4.6 Sequence: TTGTGTGAAGTGATTCACATCT
Locus tag: Kvar_0424
|
||||
| Kvar_0424 | -220 | 4.6 | TTGTGTGAAGTGATTCACATCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yrdA | ||||
| Ortholog function: carbonic anhydrase, family 3 | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3279 | -220 | 3.8 | TCCTGTGAAGTGTTTCACGTTG |
| Salmonella typhimurium LT2 | STM3399 | -222 | 4.3 | TTGTGTGAAGTGATTCACATCC |
| Citrobacter koseri ATCC BAA-895 | CKO_04691 | -221 | 3.9 | TCTTGTGAAGCGTTTCACTTTG |
| -81 | 3.8 | ATTTTTGATACCTGAAACACTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03680 | -221 | 4.6 | TTGTGTGAAGTGATTCACATCT |
| Enterobacter sp. 638 | Ent638_3711 | -222 | 4.6 | TTGTGTGAAGTGATTCACATCT |
| -47 | 3.6 | TAATGCGATCAAAGTCTTCTAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3993 | -105 | 3.6 | TTACTCGATCCGTGTCACTTTT |
| Edwardsiella tarda EIB202 | ETAE_3192 | -235 | 4.1 | TCCTGTGATGTTGTTCACATGT |
|
Position: -299
Score: 4.2 Sequence: AAATGAGAGACAGATCGCACTA
Locus tag: Kvar_0430
|
||||
| Kvar_0430 | -299 | 4.2 | AAATGAGAGACAGATCGCACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dusB | ||||
| Ortholog function: tRNA-dihydrouridine synthase B | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3260 | -297 | 4.4 | AAGTGCGAGCAAGCTCACAAAA |
| -212 | 4.3 | AATTGAGAACTTACTCAAATTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04672 | -212 | 3.7 | AAATGAGAAGTTACGCAAAATT |
| Enterobacter sp. 638 | Ent638_3699 | -299 | 4.1 | AAATGGGACCCAGATCGCAAAG |
| Erwinia amylovora ATCC 49946 | EAM_3146 | -219 | 4 | TATTGTTAACTTGCTCACAAGA |
| Yersinia pestis KIM | y0213 | -57 | 4.3 | TAACGTGATGTTATTTATAATT |
| Proteus mirabilis HI4320 | PMI3623 | -94 | 3.8 | TTTCGCGATTTGGTTAAACTTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4088 | -191 | 3.7 | CTAAGTGATAAACTTTACCAAT |
|
Position: -37
Score: 5.1 Sequence: ATGTGTGATCTAAATCACTTTT
Locus tag: Kvar_0447
|
||||
| Kvar_0447 | -37 | 5.1 | ATGTGTGATCTAAATCACTTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aaeR | ||||
| Ortholog function: LysR-family transcriptional regulator | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3243 | -37 | 5.3 | TTATGTGATCTAAATCACTTTT |
| Salmonella typhimurium LT2 | STM3367 | -37 | 5.3 | TTATGTGATCTAAATCACTTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_04651 | -37 | 5.3 | ATATGTGATCTAAATCACTTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03652 | -55 | 5.1 | ATGTGTGATCTAAATCACTTTT |
| Enterobacter sp. 638 | Ent638_3680 | -37 | 5.3 | ATATGTGATCTAAATCACTTTT |
| Erwinia amylovora ATCC 49946 | EAM_3128 | -37 | 5.3 | AAATGTGATCTAAATCACTTTT |
| Yersinia pestis KIM | y0180 | -55 | 5.1 | ATGTGTGATCTAAATCACTTTT |
| Serratia proteamaculans 568 | Spro_4393 | -37 | 4.9 | ATCTGTGATCTAAATCACTTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0276 | -37 | 5.1 | TAGTGTGATCTAAATCACTTTT |
| Edwardsiella tarda EIB202 | ETAE_3129 | -131 | 4.5 | ATCTGTGACGCAAATCACTTTT |
|
Position: -116
Score: 5.2 Sequence: AAAAGTGATTTAGATCACACAT
Locus tag: Kvar_0448
|
||||
| Kvar_0448 | -116 | 5.2 | AAAAGTGATTTAGATCACACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhcR | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3242 | -167 | 5.4 | AAAAGTGATTTAGATCACATAA |
| Salmonella typhimurium LT2 | STM3366 | -166 | 5.4 | AAAAGTGATTTAGATCACATAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04650 | -168 | 5.4 | AAAAGTGATTTAGATCACATAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03651 | -116 | 5.2 | AAAAGTGATTTAGATCACACAT |
| -63 | 3.7 | TATTGTTAGCTACATAATAAAC | ||
| Enterobacter sp. 638 | Ent638_3679 | -165 | 5.4 | AAAAGTGATTTAGATCACATAT |
| Yersinia pestis KIM | y0179 | -269 | 5.2 | AAAAGTGATTTAGATCACACAT |
| Serratia proteamaculans 568 | Spro_4392 | -293 | 5.1 | AAAAGTGATTTAGATCACAGAT |
| -89 | 3.8 | ATTTGTGGTGCGTGTCAGCTAA | ||
|
Position: -61
Score: 5 Sequence: TTTTGTGATGAGGGTCACGAAA
Locus tag: Kvar_0453
|
||||
| Kvar_0453 | -61 | 5 | TTTTGTGATGAGGGTCACGAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhcN | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3238 | -60 | 5.1 | TTTTGTGATATGGGTCACGAAA |
| Salmonella typhimurium LT2 | STM3361 | -60 | 5 | TTTTGTGATGAGGGTCACGAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04644 | -60 | 5 | TTTTGTGATGAGGGTCACGAAA |
| Enterobacter sp. 638 | Ent638_3673 | -58 | 5 | TTTTGTGATGAGGGTCACGAAA |
|
Position: -93
Score: 3.6 Sequence: ATTTGTTACATGAATCAGTAAA
Position: -71
Score: 3.8 Sequence: ATATGTGAAGCATAGCGAGTAA
Locus tag: Kvar_0481
|
||||
| Kvar_0481 | -93 | 3.6 | ATTTGTTACATGAATCAGTAAA | |
| -71 | 3.8 | ATATGTGAAGCATAGCGAGTAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: elbB | ||||
| Ortholog function: sigma cross-reacting protein 27A (SCRP-27A) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3209 | -91 | 3.7 | ATTTGTTACATGAATCAGTTAA |
| -69 | 4 | ATGTGTGATGCGTACCATTTTT | ||
| Salmonella typhimurium LT2 | STM3327 | -91 | 3.9 | ATTTGTTACATGAATCATTTAA |
| -69 | 3.6 | ATGTGTGAAGCGTAGCATTTTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04612 | -92 | 3.7 | TTTTGTTACATGAATCAGTTAA |
| -70 | 3.6 | ATGTGTGAAGCGCAGCATTTTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03618 | -93 | 3.6 | ATTTGTTACATGAATCAGTAAA |
| -71 | 3.8 | ATATGTGAAGCATAGCGAGTTA | ||
| Serratia proteamaculans 568 | Spro_4341 | -72 | 3.7 | ATGTGTGATGTAGATTAGTGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0316 | -72 | 3.7 | ATGTGTGATGTAGATTAGTGTT |
| Proteus mirabilis HI4320 | PMI3679 | -174 | 4.1 | TTTTTTGATTATCATTACATAG |
|
Position: -99
Score: 4.4 Sequence: TACTTTGAGCCGGTTCACACTT
Locus tag: Kvar_0527
|
||||
| Kvar_0527 | -99 | 4.4 | TACTTTGAGCCGGTTCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: deaD | ||||
| Ortholog function: ATP-independent RNA helicase | ||||
| Salmonella typhimurium LT2 | STM3280.S | -154 | 3.9 | CTTTTTGATTGCCATCACCTTC |
| -99 | 4.4 | TACTTTGAGCCGGTTCACACTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04559 | -103 | 3.9 | CTTTTTGATTGCCATCACCTTC |
| -48 | 4.4 | TACTTTGAGCCGGTTCACACTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03570 | -154 | 3.8 | TTTTTTGCTTGCCATCACCTTC |
| -99 | 4.4 | TACTTTGAGCCGGTTCACACAT | ||
| Enterobacter sp. 638 | Ent638_3599 | -154 | 4.1 | TCTTATGATTGCCATCACCTTA |
| -99 | 4.4 | TACTTTGAGCCGGTTCACACTT | ||
| Erwinia amylovora ATCC 49946 | EAM_3065 | -99 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Yersinia pestis KIM | y0696 | -96 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Serratia proteamaculans 568 | Spro_0495 | -96 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0718 | -96 | 4.4 | CAATTTGAGCCGGTTCACACTT |
| Edwardsiella tarda EIB202 | ETAE_0411 | -96 | 4.8 | TAATTTGAGCCGGTTCACACTT |
| Proteus mirabilis HI4320 | PMI3424 | -80 | 5 | TAATTTGAGCCAGTTCACATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4523 | -95 | 5 | TAATTTGAGCCAGTTCACATTT |
|
Position: -125
Score: 5 Sequence: AGGAGTGATGTAGATCACATTT
Locus tag: Kvar_0557
|
||||
| Kvar_0557 | -125 | 5 | AGGAGTGATGTAGATCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: garD | ||||
| Ortholog function: D-galactarate dehydratase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3128 | -210 | 4.2 | TATTTTGAGCATATGCACATAA |
| -127 | 4.4 | ATGATTGACATTGATCACATTT | ||
| -52 | 3.7 | AAATGAGACCAGGTCCTCATTT | ||
| Salmonella typhimurium LT2 | STM3250 | -153 | 4.3 | TGCGGTGATCTGGATCACATTC |
| Citrobacter koseri ATCC BAA-895 | CKO_04527 | -54 | 4 | AGTTGTTCTCTTTAACACATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03540 | -125 | 4.8 | AGGAGTGATGCCGATCACATTT |
| Enterobacter sp. 638 | Ent638_3570 | -143 | 4.7 | AGGGGTGATCTTGATCACATTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3578 | -296 | 4.2 | TAGTGCGAGGTATTTCACGAAA |
| -204 | 5.1 | AAATGTGATCAAACTCACCAAA | ||
|
Position: -289
Score: 4.7 Sequence: AAATGTGATCTACATCACTCCT
Locus tag: Kvar_0558
|
||||
| Kvar_0558 | -289 | 4.7 | AAATGTGATCTACATCACTCCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: garP | ||||
| Ortholog function: d-galactonate transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3127 | -269 | 4.4 | AAATGTGATCAATGTCAATCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03539 | -289 | 4.5 | AAATGTGATCGGCATCACTCCT |
| Enterobacter sp. 638 | Ent638_3569 | -291 | 4.7 | AAATGTGATCAAGATCACCCCT |
|
Position: -265
Score: 4.4 Sequence: TTTTGTGACAGCACTCAACTTT
Locus tag: Kvar_0577
|
||||
| Kvar_0577 | -265 | 4.4 | TTTTGTGACAGCACTCAACTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: exuT | ||||
| Ortholog function: Hexuronate transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3093 | -274 | 4.2 | TTTCGTGAGTTAGATCAATAAA |
| -152 | 5.1 | ATTTGTGATGGCTCTCACCTTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04495 | -250 | 5.2 | ATTTGTGATGTCACTCACCTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03521 | -263 | 4.4 | TTTTGTGACAGCTCTCAACTTT |
| Enterobacter sp. 638 | Ent638_3547 | -261 | 4.2 | TTTCGTGAGTTAGATCAATAAA |
| -139 | 5.2 | TTTTGTGATGTCACTCACCTTT | ||
| Serratia proteamaculans 568 | Spro_4322 | -180 | 4.8 | TTTTGTGATATCACTCAACTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0644 | -208 | 4.8 | TTTTGTGATATCACTCAACTTT |
|
Position: -111
Score: 3.9 Sequence: TTCTTTGAATCCCATCACAATC
Locus tag: Kvar_0590
|
||||
| Kvar_0590 | -111 | 3.9 | TTCTTTGAATCCCATCACAATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadH | ||||
| Ortholog function: 2,4-dienoyl-CoA reductase [NADPH] (2,4-dienoyl coenzyme A reductase) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3081 | -112 | 3.9 | CTTTTTGAATCCCATCACAAAC |
| Salmonella typhimurium LT2 | STM3219 | -113 | 4.3 | TTTTTTGAATCCCATCACAATC |
| Citrobacter koseri ATCC BAA-895 | CKO_04487 | -113 | 4.3 | TTTTTTGAATCCCATCACAATC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03510 | -111 | 3.9 | TTCTTTGAATCCCATCACAATC |
| Enterobacter sp. 638 | Ent638_3539 | -111 | 3.9 | ATCTTTGAATCCCATCACATTC |
| Erwinia amylovora ATCC 49946 | EAM_0507 | -169 | 3.8 | AACCGTGACTGAGATCGCTAAA |
| Yersinia pestis KIM | y3589 | -131 | 4 | ATTCATGACGGCTATCACAATC |
| Serratia proteamaculans 568 | Spro_4309 | -126 | 4.2 | ATTCATGACATCTATCACATTC |
| Proteus mirabilis HI4320 | PMI3702 | -213 | 3.8 | TATTATTATATGATTAAAAAAT |
| -103 | 3.8 | TTCCATGATTAAGATCACAACT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3990 | -161 | 4.3 | TTTCATGACCTTCATCACATTC |
|
Position: -75
Score: 3.7 Sequence: TTTTGCCAGTCGGCTCACACTT
Locus tag: Kvar_0592
|
||||
| Kvar_0592 | -75 | 3.7 | TTTTGCCAGTCGGCTCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lsrR | ||||
| Ortholog function: LsrR, transcriptional repressor of lsr operon | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1512 | -87 | 4.1 | AACTGTGGTTGCCATCACAGAT |
| Salmonella typhimurium LT2 | STM4073 | -161 | 3.6 | AACTCTCATCCAGATCACGTTT |
| -92 | 4 | TTTTGTGGCGTTAATCACGGTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03508 | -75 | 3.7 | TTTTGCCAGTCGGCTCACACTT |
| Enterobacter sp. 638 | Ent638_3537 | -122 | 3.4 | TTTATTGATTAGGATCCAATTC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3142 | -137 | 4.3 | AATTGTGATCTTGGCAATATTT |
|
Position: -49
Score: 4.2 Sequence: TTATGTTATTTAATAAACATAA
Locus tag: Kvar_0685
|
||||
| Kvar_0685 | -49 | 4.2 | TTATGTTATTTAATAAACATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nupG | ||||
| Ortholog function: Nucleoside permease NupG | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2964 | -166 | 5.2 | AAATGTTATCCACATCACAATT |
| -116 | 3.8 | TTATTTGCCACAGGTAACAAAA | ||
| Salmonella typhimurium LT2 | STM3113 | -166 | 3.9 | AAGTGTTAACTCCGTCACCCTT |
| -116 | 3.6 | ATATTTGTCACAGGTAACAAAA | ||
| -50 | 3.6 | AAATGTGCCTTTTAAAACATTC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04339 | -166 | 3.9 | AAGTGTTAACTCCATCACTCTT |
| -116 | 3.6 | ATATTTGTCACAGGTAACAAAA | ||
| -50 | 3.6 | AAATGTGCCTTTTAAAACATTC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03396 | -49 | 4.2 | TAATGTTATTTTAAAAACATAA |
| Enterobacter sp. 638 | Ent638_3369 | -163 | 4.5 | AAACGTTATTTGCATCACAATC |
| -114 | 3.7 | TTTTTTGCGGGAGGTAACAAAA | ||
|
Position: -275
Score: 3.6 Sequence: TTTGGTAATACAAATAACCATT
Position: -257
Score: 3.6 Sequence: CATTCTGAATAAATTCAAATAA
Locus tag: Kvar_0698
|
||||
| Kvar_0698 | -275 | 3.6 | TTTGGTAATACAAATAACCATT | |
| -257 | 3.6 | CATTCTGAATAAATTCAAATAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: csgD | ||||
| Ortholog function: DNA-binding transcriptional activator in two-component regulatory system | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03383 | -275 | 3.5 | TTTGGTAATACAAATAACTTTT |
|
Position: -84
Score: 3.8 Sequence: AGCCGTGACTATAATCACGTTT
Locus tag: Kvar_0705
|
||||
| Kvar_0705 | -84 | 3.8 | AGCCGTGACTATAATCACGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: galP | ||||
| Ortholog function: sugar transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2943 | -156 | 3.6 | TATGATGATATAACTCAATTAT |
| -82 | 4.9 | TGATGTGATTTGCTTCACATCT | ||
| Salmonella typhimurium LT2 | STM3091 | -83 | 4.6 | CATTGTGATTAGCCTCACATCT |
| Citrobacter koseri ATCC BAA-895 | CKO_04318 | -83 | 5.3 | TAACGTGATTCGAATCACATAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03376 | -84 | 3.8 | AGCCGTGATTATAGTCACGTTT |
| Enterobacter sp. 638 | Ent638_3347 | -171 | 3.9 | TATTGGGATGCACATCAACTCT |
| -102 | 3.7 | TAGTGTAACCGATTACACCAAT | ||
| -84 | 5.3 | CAATGTGATTTATCTCACATAT | ||
| Erwinia amylovora ATCC 49946 | EAM_2827 | -152 | 4.1 | TCATGTGATCTGTCGCACAGTC |
| Serratia proteamaculans 568 | Spro_1160 | -276 | 4.5 | TGGTGTGATATCGGTTACATTT |
| -100 | 3.6 | TTGTGTAATCGTTTCCACTAAT | ||
| -82 | 4.6 | TAATGTGATCGCACTCACTTAC | ||
| Edwardsiella tarda EIB202 | ETAE_2966 | -275 | 3.7 | CAAAGTGAAAACGATTACATTT |
| -61 | 4.5 | TTATGTGATCATGCGCACTTTA | ||
|
Position: -199
Score: 4.3 Sequence: AAATGCGACCGCCATCAAAAAA
Locus tag: Kvar_0706
|
||||
| Kvar_0706 | -199 | 4.3 | AAATGCGACCGCCATCAAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: metK | ||||
| Ortholog function: S-adenosylmethionine synthetase (EC 2.5.1.6) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2942 | -200 | 3.6 | GAATGAGACACGATTCAAAAAA |
| Salmonella typhimurium LT2 | STM3090 | -200 | 3.9 | CATTGCGACGGCCTTCAAAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04317 | -199 | 3.5 | CAACGAGAGTTGATTCAAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03375 | -199 | 4.3 | AAATGCGACCGCCATCAAAAAA |
| Enterobacter sp. 638 | Ent638_3346 | -199 | 4.4 | TAATGCGAGCGATATCAAAAAA |
| Proteus mirabilis HI4320 | PMI2095 | -275 | 3.5 | CACTGTGATTCAGTTTTCACAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3683 | -205 | 3.3 | GTTTATACTCGCAATCACATAA |
|
Position: -213
Score: 4.4 Sequence: AAATGTGACACAAGTCATATAG
Locus tag: Kvar_0712
|
||||
| Kvar_0712 | -213 | 4.4 | AAATGTGACACAAGTCATATAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: epd | ||||
| Ortholog function: D-erythrose 4-phosphate dehydrogenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2927 | -213 | 4.7 | AAGTGTGATGTGAGTCAGATAA |
| Salmonella typhimurium LT2 | STM3070 | -213 | 5 | AAATGTGATGCAGGTCAGATAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04297 | -213 | 4.8 | AAGTGTGATGCAGGTCAGATAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03356 | -213 | 4.8 | AAATGTGATGTGAGTCATATAG |
| Enterobacter sp. 638 | Ent638_3340 | -215 | 4.5 | AAATGTGACGCAAGTCATATAG |
| Erwinia amylovora ATCC 49946 | EAM_2813 | -208 | 4.1 | TTTTGTGACGCAGATCGAAAGT |
| Yersinia pestis KIM | y3309 | -216 | 3.7 | AATTGTGCCCTTTTTCAGGGAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3913 | -194 | 4.1 | TTTTATGACGCAGGTCACTCTT |
| Edwardsiella tarda EIB202 | ETAE_2958 | -233 | 4.9 | AATTGTGATGCAATGCACGTTT |
| Proteus mirabilis HI4320 | PMI0241 | -253 | 4.4 | AAATGTTAACAAGAGCACATTT |
|
Position: -107
Score: 3.8 Sequence: CCCTGCGATGCAGATCACACAA
Locus tag: Kvar_0718
|
||||
| Kvar_0718 | -107 | 3.8 | CCCTGCGATGCAGATCACACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: iciA | ||||
| Ortholog function: chromosome replication initiation inhibitor protein | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03350 | -107 | 3.8 | CCCTGCGATGCAGATCACACAA |
| Enterobacter sp. 638 | Ent638_3334 | -126 | 3.9 | CCCTGTGACCGGTGTCACATTA |
| -48 | 3.7 | ATTTGTGTCATAGTGCAGAATA | ||
| Yersinia pestis KIM | y3303 | -249 | 3.7 | TAATTCTAGCGAGATCACAGTT |
| Edwardsiella tarda EIB202 | ETAE_2951 | -48 | 3.8 | TAACGTTTTATACATAACAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3610 | -41 | 3.6 | CATAGTGATATTCAGAAAAATA |
|
Position: -82
Score: 3.9 Sequence: TTGTGTGATCTGCATCGCAGGG
Locus tag: Kvar_0719
|
||||
| Kvar_0719 | -82 | 3.9 | TTGTGTGATCTGCATCGCAGGG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rpiA | ||||
| Ortholog function: Ribose 5-phosphate isomerase A (EC 5.3.1.6) | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03349 | -82 | 3.9 | TTGTGTGATCTGCATCGCAGGG |
| Enterobacter sp. 638 | Ent638_3333 | -47 | 3.8 | TAATGTGACACCGGTCACAGGG |
| Yersinia pestis KIM | y3302 | -114 | 4.2 | AACTGTGATCTCGCTAGAATTA |
| Edwardsiella tarda EIB202 | ETAE_2950 | -276 | 4 | TTTTGTTATGTATAAAACGTTA |
| Proteus mirabilis HI4320 | PMI2032 | -96 | 3.8 | TAAAATGTTGTGTCTCAAATTT |
|
Position: -214
Score: 4.6 Sequence: TTTGGTGACTTCTGTCACATTT
Locus tag: Kvar_0720
|
||||
| Kvar_0720 | -214 | 4.6 | TTTGGTGACTTCTGTCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: serA | ||||
| Ortholog function: D-3-phosphoglycerate dehydrogenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2913 | -210 | 4.1 | TTTGGTGACATGTGTCACGCTT |
| Salmonella typhimurium LT2 | STM3062 | -217 | 4.5 | TTTGGTGACATGTATCACGTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03348 | -214 | 4.6 | TTTGGTGACTTCTGTCACATTT |
| Enterobacter sp. 638 | Ent638_3332 | -215 | 4.1 | TTCGGTGACTTGTATCACGTTT |
| Yersinia pestis KIM | y3301 | -126 | 4.8 | TTTGGTGATATATATCACATTC |
| Serratia proteamaculans 568 | Spro_3923 | -215 | 4.4 | TTTGGTGACATATGTCACATTG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3905 | -214 | 3.9 | TTTGGTACTTAATATCACATTT |
| Proteus mirabilis HI4320 | PMI2031 | -210 | 4 | TTCAGTGATATATATCACACGA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3605 | -207 | 4.4 | TTTAGTGATATATTTCATATCT |
| -178 | 4.2 | TTATTTGATCTAAATCCTAATT | ||
| -105 | 4.4 | TTATGTGATGGGAATAGCAATC | ||
|
Position: -105
Score: 4.6 Sequence: CTTTGTGATTGGCTTCACTTTT
Locus tag: Kvar_0802
|
||||
| Kvar_0802 | -105 | 4.6 | CTTTGTGATTGGCTTCACTTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yqeF | ||||
| Ortholog function: Acetyl-CoA acetyltransferase (EC 2.3.1.9) | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03268 | -105 | 4.6 | CTTTGTGATTGGCTTCACTTTT |
|
Position: -132
Score: 4.4 Sequence: AAGTTTAATGTCCATCACAAAA
Locus tag: Kvar_0806
|
||||
| Kvar_0806 | -132 | 4.4 | AAGTTTAATGTCCATCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: araE | ||||
| Ortholog function: sugar transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2841 | -131 | 4.4 | AATTGGAATATCCATCACATAA |
| Salmonella typhimurium LT2 | STM3016 | -271 | 4 | TTTTATGATCTCATTAGCATAG |
| -131 | 4.9 | AAGTGTAATATCCATCACATAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03264 | -191 | 4.4 | AAGTTTAATGTCCATCACAAAA |
| Enterobacter sp. 638 | Ent638_3294 | -209 | 3.7 | CGAGATGACATCGATCACATTT |
| -130 | 4.1 | AATTGGAATATCCATCACAGAA | ||
|
Position: -135
Score: 4.4 Sequence: ATATTTGATCGCGATCGCATCT
Position: -94
Score: 4.7 Sequence: TTTTGTGATTAACATCATGTAT
Locus tag: Kvar_0808
|
||||
| Kvar_0808 | -135 | 4.4 | ATATTTGATCGCGATCGCATCT | |
| -94 | 4.7 | TTTTGTGATTAACATCATGTAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: scrT | ||||
| Ortholog function: Sucrose permease, major facilitator superfamily | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03262 | -135 | 4.4 | ATTTTTGATCGCGATCGCATCT |
| -94 | 5.1 | TTTTGTGATTAACATCATATAT | ||
| -46 | 3.6 | TTTTGTTAACGTTACCATAATT | ||
| Serratia proteamaculans 568 | Spro_2083 | -139 | 4.1 | TTCGGTGATTTCGATCACACTC |
| -98 | 4.7 | TTTTGTGATTAACATCGCAATC | ||
| Proteus mirabilis HI4320 | PMI0850 | -223 | 3.7 | AAACGTGAAATATCTAATGAAT |
| -141 | 4.4 | AATAGCGATCTATCGCACATAA | ||
| -100 | 4.4 | TTTAGTGCGTTAAATCACATAA | ||
|
Position: -221
Score: 4.7 Sequence: TAAAGTGACAATTATCACATAA
Position: -181
Score: 4.6 Sequence: AAGTGTGACCATCATCATATTA
Locus tag: Kvar_0901
|
||||
| Kvar_0901 | -221 | 4.7 | TAAAGTGACAATTATCACATAA | |
| -181 | 4.6 | AAGTGTGACCATCATCATATTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fucP | ||||
| Ortholog function: L-fucose permease | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2801 | -207 | 4.9 | TAAAGTGATGGTAGTCACATAA |
| -167 | 4.5 | AAGTGTGACCGCCGTCATATTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04160 | -219 | 5 | TAAAGTGATGATAATCACATAA |
| -179 | 4.8 | AAATGTGACCACCATCATATTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03152 | -260 | 4.7 | TAAAGTGACAATAATCACATAA |
| -220 | 4.6 | AAGTGTGACCATCATCATATTA | ||
|
Position: -155
Score: 4.5 Sequence: ATTATTGACGCGGTTCACAAAA
Locus tag: Kvar_0902
|
||||
| Kvar_0902 | -155 | 4.5 | ATTATTGACGCGGTTCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fucA | ||||
| Ortholog function: L-fuculose phosphate aldolase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2800 | -144 | 4.1 | TTAGTTGAACCAGGTCACAAAA |
| -54 | 4 | TAGTGTGAAAGGAACAACATTA | ||
| Salmonella typhimurium LT2 | STM2974 | -157 | 4.8 | TTAATTGATGTGAATCACAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_04159 | -144 | 4.7 | TTAATTGATGCGTATCACAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03151 | -155 | 4.4 | ATAATTGACGCGGCTCACAAAA |
| Edwardsiella tarda EIB202 | ETAE_0293 | -175 | 4.2 | AGTCTTGATGACGGTCACAAAA |
|
Position: -158
Score: 4.1 Sequence: ATTTGGGATCGCGATCACTGAT
Locus tag: Kvar_0916
|
||||
| Kvar_0916 | -158 | 4.1 | ATTTGGGATCGCGATCACTGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdaC | ||||
| Ortholog function: Serine transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2796 | -179 | 4.2 | ATTTGAGATCAAGATCACTGAT |
| Salmonella typhimurium LT2 | STM2970 | -176 | 4.2 | ATTTGAGATCGGGATCACTGAT |
| Citrobacter koseri ATCC BAA-895 | CKO_04152 | -176 | 4.1 | ATTTGGGATCGCGATCACTGAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03139 | -158 | 4.2 | ATTTGAGATCGCGATCACTGAT |
| Enterobacter sp. 638 | Ent638_3249 | -176 | 4.1 | ATTTGGGATCAGGATCACTGAT |
| Erwinia amylovora ATCC 49946 | EAM_1294 | -300 | 3.6 | ATTTGTTAAAAATCGCAAAAAA |
| -180 | 3.9 | AAATGTGATTCCGATCACCGGC | ||
| Yersinia pestis KIM | y2862 | -286 | 4.3 | AATTGAGATCACGATCACGGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3158 | -195 | 3.7 | TTCTGTGATCGCCTCAATATTA |
| Proteus mirabilis HI4320 | PMI0672 | -283 | 4.3 | ATTTGAGATGGTGATCACGGTA |
|
Position: -168
Score: 4.2 Sequence: CTTCGCGATCAAAATCACAAAA
Locus tag: Kvar_1015
|
||||
| Kvar_1015 | -168 | 4.2 | CTTCGCGATCAAAATCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ascF | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2715 | -177 | 4.2 | TCAGGTGACCGGTTTCACAAAT |
| Citrobacter koseri ATCC BAA-895 | CKO_04070 | -179 | 4.4 | ACAAGTGATCATTCTCACAATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03051 | -168 | 4.1 | CTTAGCGATCAAAATCACAAAA |
| Enterobacter sp. 638 | Ent638_3188 | -128 | 4.4 | CAAAGTGATCGTTATCACGAAT |
| -54 | 3.7 | TTTTGTGAAACCGGTTTCCTAT | ||
| Serratia proteamaculans 568 | Spro_0576 | -189 | 4.4 | AAAAGTGACCACCATCACGAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2165 | -255 | 3.9 | CATGGCGATCGTGGTCACATAA |
| -212 | 3.9 | TATTGAAATCGCACTCATATAT | ||
|
Position: -92
Score: 4.7 Sequence: TTTTGCGATCTATTTAACACTT
Locus tag: Kvar_1033
|
||||
| Kvar_1033 | -92 | 4.7 | TTTTGCGATCTATTTAACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: srlA | ||||
| Ortholog function: PTS system, glucitol/sorbitol-specific IIC component (EC 2.7.1.69) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2702 | -93 | 4.4 | TTTTGCGATCAAAATAACACTT |
| Salmonella typhimurium LT2 | STM2832 | -93 | 4.3 | TTTTGCGATCACAATAACACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_04056 | -93 | 4.3 | TTTTGAGATCAAAATAACACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03037 | -92 | 4.6 | TTTTGCGATCCATTTAACACTT |
| Serratia proteamaculans 568 | Spro_3569 | -110 | 4.9 | AATTGTGATCTATTTAAAACAA |
|
Position: -81
Score: 3.7 Sequence: TTCTGTGTTGCAAATCGCAACA
Locus tag: Kvar_1078
|
||||
| Kvar_1078 | -81 | 3.7 | TTCTGTGTTGCAAATCGCAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: prpR | ||||
| Ortholog function: Propionate catabolism operon regulatory protein PrpR | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02992 | -81 | 4.1 | TTATGTGTTGCAAATCGCAACA |
| Serratia proteamaculans 568 | Spro_2411 | -76 | 3.4 | TTTTGTGTCCCATGTCGCAACG |
|
Position: -204
Score: 4.1 Sequence: TGTTGCGATTTGCAACACAGAA
Position: -7
Score: 3.5 Sequence: ATTTGCGATGCGTTATGCACAT
Locus tag: Kvar_1079
|
||||
| Kvar_1079 | -204 | 4.1 | TGTTGCGATTTGCAACACAGAA | |
| -7 | 3.5 | ATTTGCGATGCGTTATGCACAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aldB | ||||
| Ortholog function: Aldehyde dehydrogenase B (EC 1.2.1.22) | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02991 | -205 | 4.4 | TGTTGCGATTTGCAACACATAA |
| Serratia proteamaculans 568 | Spro_2410 | -225 | 3.5 | CGTTGCGACATGGGACACAAAA |
|
Position: -216
Score: 4 Sequence: TTTCGTAATCGCGATCGCGATA
Locus tag: Kvar_1143
|
||||
| Kvar_1143 | -216 | 4 | TTTCGTAATCGCGATCGCGATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aroF | ||||
| Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase | ||||
| Salmonella typhimurium LT2 | STM2670 | -71 | 3.9 | TTTTGTGGTATGGTTTAAACAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02923 | -159 | 3.8 | TATTGTTATACGCATCGCGCCA |
| Edwardsiella tarda EIB202 | ETAE_2837 | -117 | 3.8 | ATGTACGATATTGTTTACATAT |
| Proteus mirabilis HI4320 | PMI0387 | -214 | 4.5 | TTATTTTATCTTAGTCACATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1262 | -262 | 3.6 | TGTTTTGATATTGATTTTATTT |
|
Position: -82
Score: 5.3 Sequence: AAATGTGATTTAGATCACGCTT
Locus tag: Kvar_1147
|
||||
| Kvar_1147 | -82 | 5.3 | AAATGTGATTTAGATCACGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: raiA | ||||
| Ortholog function: stationary phase translation inhibitor and ribosome stability factor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2597 | -81 | 4.8 | TTATGAGATTTTCATCACACAT |
| Citrobacter koseri ATCC BAA-895 | CKO_03918 | -40 | 5.2 | TAATGTGATTTAAATCACGCTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02919 | -88 | 5.6 | AAATGTGATTTATATCACACAT |
| Enterobacter sp. 638 | Ent638_3076 | -81 | 5.4 | ATGTGTGATTTAGATCACACAT |
| Erwinia amylovora ATCC 49946 | EAM_2617 | -83 | 5.2 | AAATGTGATTTCAATCACGATT |
| Serratia proteamaculans 568 | Spro_0882 | -83 | 4.8 | ATACGTGATTTTCATCACGCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3349 | -86 | 4 | AAAAGCGATCAATCTCACGCTT |
| Edwardsiella tarda EIB202 | ETAE_2834 | -82 | 3.8 | ATCCGTGATTTTCCTCTCACAC |
| Proteus mirabilis HI4320 | PMI0391 | -82 | 4.6 | AAAAGTGATCTTGATCATGTTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1266 | -87 | 5.1 | AATAGTGATTTAGATCACCTTT |
|
Position: -124
Score: 3.9 Sequence: TTTATTGATTTATATCAAGGAA
Locus tag: Kvar_1161
|
||||
| Kvar_1161 | -124 | 3.9 | TTTATTGATTTATATCAAGGAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: grcA | ||||
| Ortholog function: Autonomous glycyl radical cofactor | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02902 | -124 | 3.9 | TTTATTGATTTATATCAAGGAA |
|
Position: -105
Score: 3.4 Sequence: TTCTGTGAACTTCACCAGCAAT
Locus tag: Kvar_1190
|
||||
| Kvar_1190 | -105 | 3.4 | TTCTGTGAACTTCACCAGCAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: csiE | ||||
| Ortholog function: Stationary phase inducible protein CsiE | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2535 | -104 | 3.5 | TTCTGTGACGCTTGCCAACATT |
| Salmonella typhimurium LT2 | STM2553 | -106 | 3.8 | TTCTGTGACACTCCTCAGCATT |
| Citrobacter koseri ATCC BAA-895 | CKO_00245 | -105 | 3.4 | TTCTGTGATGCTCGCCAGCATT |
| -42 | 3.6 | TTTAGCTATCCTTATCAAACAA | ||
| Erwinia amylovora ATCC 49946 | EAM_2496 | -103 | 3.4 | TTTTGTGACCTGCCTTAAAAGC |
| Yersinia pestis KIM | y1328 | -161 | 4.1 | TAATGTAACACATAGCGCATTA |
| Serratia proteamaculans 568 | Spro_3633 | -276 | 3.4 | AAAGGTGGTGTTCATATCAATA |
|
Position: -218
Score: 4 Sequence: TTATGTGACGCAGAGCACTCTC
Position: -179
Score: 4 Sequence: TATTGTTAATAGCCTCACATCA
Position: -92
Score: 3.7 Sequence: TTTATTCATCTGAATCACGTAT
Locus tag: Kvar_1251
|
||||
| Kvar_1251 | -218 | 4 | TTATGTGACGCAGAGCACTCTC | |
| -179 | 4 | TATTGTTAATAGCCTCACATCA | ||
| -92 | 3.7 | TTTATTCATCTGAATCACGTAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yffB | ||||
| Ortholog function: FIG138056: a glutathione-dependent thiol reductase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2471 | -246 | 3.8 | GTATGTGATACACAGCAACATT |
| Salmonella typhimurium LT2 | STM2482 | -282 | 4 | TTATGTGACTTACTGCAATATT |
| Citrobacter koseri ATCC BAA-895 | CKO_00317 | -276 | 4 | TTATGTGACTTACTGCAATATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02804 | -218 | 4 | TAATGTGACGTAGAGCAACCTC |
| -179 | 4 | TAATGTTAAAGCCCTCACATCA | ||
| Enterobacter sp. 638 | Ent638_2966 | -254 | 4 | TTATGTGACCAATAGCAATATT |
| -77 | 3.6 | ATATGTTATGTTTTGCCAAATA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1292 | -138 | 3.7 | TTCTGCAACGCAGTTCACAGTA |
|
Position: -103
Score: 4.3 Sequence: CTGAGTGATCCACTTCACCTTT
Locus tag: Kvar_1259
|
||||
| Kvar_1259 | -103 | 4.3 | CTGAGTGATCCACTTCACCTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: b2462 | ||||
| Ortholog function: putative carboxysome structural protein, ethanol utilization | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2462 | -103 | 4.6 | CTTAGTGATCTACCTCACCTTT |
| Salmonella typhimurium LT2 | STM2470 | -168 | 3.8 | AAATGTGATGCACCACGATATT |
| -103 | 4.6 | CTTAGTGATCTACCTCACCTTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00333 | -103 | 4.6 | CTTAGTGATCTACTTCACCTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02796 | -102 | 4.3 | CTGAGTGATCCACTTCACCTTT |
|
Position: -334
Score: 3.9 Sequence: TTTTGTGGCATACGTCAAAGTT
Position: -206
Score: 4 Sequence: TTTTATGATTTGGTTCAAGTCT
Locus tag: Kvar_1294
|
||||
| Kvar_1294 | -334 | 3.9 | TTTTGTGGCATACGTCAAAGTT | |
| -206 | 4 | TTTTATGATTTGGTTCAAGTCT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ptsH | ||||
| Ortholog function: PTS system phosphocarrier protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2415 | -209 | 3.9 | TTTTATGATTTGGTTCAATTCT |
| Salmonella typhimurium LT2 | STM2431 | -209 | 4.4 | TTTTATGATTTGGTTCAAATCT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02762 | -206 | 4 | TTTTATGATTTGGTTCAAGTCT |
| Enterobacter sp. 638 | Ent638_2943 | -271 | 4.4 | TTTTGTGGTCCACTTCAAACTT |
| -144 | 4 | TTTTATGATTTGGTTCAAGTCT | ||
| Serratia proteamaculans 568 | Spro_3448 | -149 | 3.6 | TTTTTTGATCTGAAGTGCCAAA |
| Proteus mirabilis HI4320 | PMI1828 | -275 | 4.4 | TTTTGTGGTAGAGATCAAACTT |
| -115 | 3.6 | TAACGTAACATGGCTTATATTA | ||
|
Position: -37
Score: 3.6 Sequence: AAAATTGATTTATTGCATCTAT
Locus tag: Kvar_1301
|
||||
| Kvar_1301 | -37 | 3.6 | AAAATTGATTTATTGCATCTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfeR | ||||
| Ortholog function: transcriptional regulator, LysR family | ||||
| Salmonella typhimurium LT2 | STM2424 | -37 | 3.6 | AAAATTGATTTATTGCATCTAT |
| Citrobacter koseri ATCC BAA-895 | CKO_00385 | -37 | 3.6 | AAAATTGATTTATTGCATCTAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02755 | -112 | 3.6 | AAAATTGATTTATTGCATCTAT |
| Erwinia amylovora ATCC 49946 | EAM_2384 | -33 | 3.7 | TTAATTTATTGAATTCATATAT |
| Serratia proteamaculans 568 | Spro_3441 | -33 | 3.6 | TTGATTTATTTAATTCATATAT |
|
Position: -114
Score: 4 Sequence: ATTTTTGCCATTGGTCACAGTT
Position: -84
Score: 3.8 Sequence: TAGTGTGCAATTGATCTCGTTT
Position: -31
Score: 4.1 Sequence: AAATTTAACCTGCCTCATATTT
Locus tag: Kvar_1306
|
||||
| Kvar_1306 | -114 | 4 | ATTTTTGCCATTGGTCACAGTT | |
| -84 | 3.8 | TAGTGTGCAATTGATCTCGTTT | ||
| -31 | 4.1 | AAATTTAACCTGCCTCATATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nupC | ||||
| Ortholog function: Nucleoside permease NupC | ||||
| Salmonella typhimurium LT2 | STM2409 | -133 | 3.7 | AAGTGTATTACAGATCACTAAT |
| -84 | 3.8 | TAGTGTGTGTTGGATCTCGTTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00402 | -133 | 3.7 | AAACGTATTCCAGATCACTAAT |
| -114 | 4 | AATTTTGAATCTCATCACAGCT | ||
| -84 | 3.7 | TAGTGTGTGTTTGATCTCGTTT | ||
| Enterobacter sp. 638 | Ent638_2927 | -189 | 4.7 | TTTTGTGAAGCGTAGCACACAA |
| -133 | 3.6 | AAATGTATGGTTGATCACTATT | ||
| -84 | 4.1 | TAGTGTGGTCTTGATCTCGTTT | ||
|
Position: -168
Score: 4.3 Sequence: TTTAGCGACACAGGTCACATTT
Locus tag: Kvar_1311
|
||||
| Kvar_1311 | -168 | 4.3 | TTTAGCGACACAGGTCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfeO | ||||
| Ortholog function: Chloride channel protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2389 | -109 | 4.1 | AATATCGATCTGGGTCACACAA |
| Salmonella typhimurium LT2 | STM2404 | -109 | 3.9 | AATATAGATCTTCATCACAGAA |
| Citrobacter koseri ATCC BAA-895 | CKO_00411 | -134 | 4.4 | AATATCGATCTGCATCACATAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02739 | -192 | 4.3 | TTTAGCGACACAGGTCACATTT |
| Enterobacter sp. 638 | Ent638_2922 | -111 | 3.7 | ATAATCGATCTTCGTCACAGAA |
| Serratia proteamaculans 568 | Spro_3408 | -249 | 4.7 | ATTAGCGATCCGGATCACAAAA |
|
Position: -117
Score: 4.4 Sequence: AAATGTGACCTGTGTCGCTAAA
Locus tag: Kvar_1312
|
||||
| Kvar_1312 | -117 | 4.4 | AAATGTGACCTGTGTCGCTAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glk | ||||
| Ortholog function: glucokinase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2388 | -116 | 4.1 | TTGTGTGACCCAGATCGATATT |
| Salmonella typhimurium LT2 | STM2403 | -116 | 3.9 | TTCTGTGATGAAGATCTATATT |
| Citrobacter koseri ATCC BAA-895 | CKO_00412 | -116 | 4.5 | TTATGTGATGCAGATCGATATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02738 | -117 | 4.4 | AAATGTGACCTGTGTCGCTAAA |
| Enterobacter sp. 638 | Ent638_2921 | -116 | 3.8 | TTCTGTGACGAAGATCGATTAT |
| Yersinia pestis KIM | y1505 | -113 | 4.7 | TTATGAGATGTCAGTCACAAAA |
| Serratia proteamaculans 568 | Spro_3407 | -116 | 4.8 | TTTTGTGATCCGGATCGCTAAT |
|
Position: -270
Score: 4.7 Sequence: TTAAGTGACAGAAATCACACTT
Position: -248
Score: 3.9 Sequence: AAAAATGATCTAAAACAAAAAT
Locus tag: Kvar_1323
|
||||
| Kvar_1323 | -270 | 4.7 | TTAAGTGACAGAAATCACACTT | |
| -248 | 3.9 | AAAAATGATCTAAAACAAAAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadL | ||||
| Ortholog function: Long-chain fatty acid transport protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2344 | -269 | 4.8 | ATAAGTGACCGAAATCACACTT |
| -247 | 3.9 | AAAAATGATCTAAAACAAAATT | ||
| Salmonella typhimurium LT2 | STM2391 | -262 | 4.8 | TTAAGTGACCGAAATCACACTT |
| -240 | 3.9 | AAAAATGATCTAAAACAAAAAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00446 | -263 | 4.8 | ATAAGTGACCGAAATCACACTT |
| -241 | 3.9 | AAAAATGATCTAAAACAAAAAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02726 | -264 | 4.7 | TTAAGTGACAGAAATCACACTT |
| -242 | 3.9 | AAAAATGATCTAAAACAAAAAT | ||
| Enterobacter sp. 638 | Ent638_2884 | -269 | 4.2 | GTAAGTGACCGATATCACACTA |
| -247 | 4 | AAAAATGATCTAGCGCAAAAAT | ||
| -214 | 3.7 | ATGAGTGCGACGGCTCGCATTT | ||
| Erwinia amylovora ATCC 49946 | EAM_2348 | -194 | 3.9 | TTTTGTTAAGCAGATCTCTTTT |
| Serratia proteamaculans 568 | Spro_3381 | -271 | 5.1 | TTAAGTGATGGAAATCACAAAT |
| -196 | 3.8 | TTTTGTTAGCCAGATCTCTCTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3081 | -332 | 3.8 | AATTTTTATCTTCCTTATATTT |
| -262 | 4.9 | TTTAGTGATATCAGTCACATTA | ||
| Proteus mirabilis HI4320 | PMI1810 | -326 | 3.7 | AAGTGTTAATTATCTATCATAA |
| -186 | 4.2 | TAATGTTAACTAAATCCCAAAT | ||
|
Position: -95
Score: 3.8 Sequence: AGGCATGATGTTAATCATAAAT
Locus tag: Kvar_1367
|
||||
| Kvar_1367 | -95 | 3.8 | AGGCATGATGTTAATCATAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ackA | ||||
| Ortholog function: acetate kinase | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02687 | -95 | 3.8 | AGGCATGATGTTAATCATAAAT |
| Enterobacter sp. 638 | Ent638_2840 | -96 | 3.8 | TGGCATGATGTTAATCATAAAT |
| Serratia proteamaculans 568 | Spro_3316 | -125 | 3.8 | TCACATGATGTTAATCATAAAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3039 | -95 | 4.2 | AGGTATGATGTTAATCATAAAT |
| Proteus mirabilis HI4320 | PMI1771 | -123 | 3.6 | AAGCATGATGCGTATCATTAAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3095 | -121 | 3.6 | TAGCATGATGTTAATCATTTAA |
|
Position: -328
Score: 3.6 Sequence: TTTTATGATACGTGGCTAAAAA
Position: -265
Score: 3.5 Sequence: ATTTATGATTAACATCATGCCT
Locus tag: Kvar_1368
|
||||
| Kvar_1368 | -328 | 3.6 | TTTTATGATACGTGGCTAAAAA | |
| -265 | 3.5 | ATTTATGATTAACATCATGCCT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfbV | ||||
| Ortholog function: putative cytoplasmic protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2295 | -263 | 3.6 | ATTTATGATTAACATCATGCAC |
| -54 | 4.1 | AGTTGTGAATTTGCACAAATTT | ||
| Erwinia amylovora ATCC 49946 | EAM_2300 | -44 | 4 | TTGTGTGTTTTTTTTAAAATTT |
| Edwardsiella tarda EIB202 | ETAE_2396 | -34 | 3.6 | TTTTTTAACTCTTATCGAATAA |
| Proteus mirabilis HI4320 | PMI1770 | -290 | 3.7 | ATTAATGATACGCATCATGCTT |
| -260 | 3.6 | AAACTTGATGCTAATTATAGTT | ||
|
Position: -165
Score: 4.3 Sequence: TACTGTGAAACATCGCACAATT
Locus tag: Kvar_1406
|
||||
| Kvar_1406 | -165 | 4.3 | TACTGTGAAACATCGCACAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpA | ||||
| Ortholog function: sn-glycerol-3-phosphate dehydrogenase subunit A | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2241 | -165 | 4.6 | AAATGTGAATTGCCGCACACAT |
| Salmonella typhimurium LT2 | STM2284 | -163 | 5 | TAATGTGAATTACAGCACATAT |
| Citrobacter koseri ATCC BAA-895 | CKO_00536 | -163 | 4.7 | TAATGTGAATTACAGCACAGAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02647 | -165 | 4.3 | TACTGTGAAACATCGCACAATT |
| -115 | 3.8 | ATGTGAGCACGAAATCACATAA | ||
| Enterobacter sp. 638 | Ent638_2805 | -163 | 4.1 | TACTGTGAATCAACGCACAGAT |
| Yersinia pestis KIM | y0404 | -231 | 3.6 | AATTGTTACCTATTTTATGAAA |
| -155 | 4.4 | ACCTGTGATTTTGATCACAATC | ||
| Serratia proteamaculans 568 | Spro_0200 | -231 | 3.6 | CGCTGTGATGGATGGCGCAATT |
| -138 | 4.9 | AATCGTGATTATGATCACATTC | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4165 | -148 | 5.1 | TTTAGTGATGCAAATCACACTT |
| Edwardsiella tarda EIB202 | ETAE_3115 | -247 | 4 | TACTGTGAGAGATCGCTCATAT |
| -142 | 4.8 | TAGAGTGATTTTGATCACATTG | ||
| Proteus mirabilis HI4320 | PMI3592 | -262 | 3.7 | TACTGTGAAGTAATACTCAGTT |
| -170 | 5.5 | ATTTGTGATTAGTATCACATAT | ||
|
Position: -218
Score: 3.8 Sequence: TTGTTTGATTTCGAGCATATTC
Position: -178
Score: 4.6 Sequence: TTATGTGATTTCGTGCTCACAT
Position: -128
Score: 4.5 Sequence: AATTGTGCGATGTTTCACAGTA
Locus tag: Kvar_1407
|
||||
| Kvar_1407 | -218 | 3.8 | TTGTTTGATTTCGAGCATATTC | |
| -178 | 4.6 | TTATGTGATTTCGTGCTCACAT | ||
| -128 | 4.5 | AATTGTGCGATGTTTCACAGTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpT | ||||
| Ortholog function: glycerol-3-phosphate transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2240 | -219 | 3.7 | TTGTTTGATTTCGCGCATATTC |
| -179 | 3.6 | AAACGTGATTTCATGCGTCATT | ||
| -129 | 4.6 | ATGTGTGCGGCAATTCACATTT | ||
| Salmonella typhimurium LT2 | STM2283 | -220 | 3.6 | ATGTTTGATTTCGCGCATAATC |
| -180 | 4.2 | AAACGTGATTTCGTGCGCCTTT | ||
| -131 | 5.2 | ATATGTGCTGTAATTCACATTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00537 | -221 | 3.6 | TTGTTTGATTTCGCGCATAATC |
| -181 | 4 | AAACGTGATTTCGTGCGCTTTT | ||
| -132 | 4.8 | ATCTGTGCTGTAATTCACATTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02646 | -218 | 3.8 | TTGTTTGATTTCGAGCATATTC |
| -178 | 4.6 | TTATGTGATTTCGTGCTCACAT | ||
| -128 | 4.5 | AATTGTGCGATGTTTCACAGTA | ||
| Enterobacter sp. 638 | Ent638_2804 | -201 | 3.6 | TTGTTTGATTTCGAACATAATC |
| -161 | 3.8 | AAGCGTGATCTCATGCGCTTAT | ||
| -111 | 4 | ATCTGTGCGTTGATTCACAGTA | ||
| Erwinia amylovora ATCC 49946 | EAM_0195 | -240 | 3.7 | AAACGCGATGCGGTTAACGATG |
| -147 | 3.7 | ATTTGTGCCTCTCTTCACGGTC | ||
| Serratia proteamaculans 568 | Spro_0199 | -249 | 4.5 | GAATGTGATCATAATCACGATT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4166 | -253 | 3.7 | ATGTTTGATAAAGAGCAAAAAC |
| -193 | 4.9 | AAGTGTGATTTGCATCACTAAA | ||
| Edwardsiella tarda EIB202 | ETAE_3116 | -200 | 3.7 | ATATGAGCGATCTCTCACAGTA |
| Proteus mirabilis HI4320 | PMI3591 | -291 | 3.6 | ATGTTTGATAATGAGCAAAAAC |
| -232 | 5.4 | ATATGTGATACTAATCACAAAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4119 | -250 | 4.9 | TATTGTGACAATTGTCACAATT |
|
Position: -203
Score: 3.8 Sequence: AAAGTTGTTTTGGATCACAGAA
Locus tag: Kvar_1446
|
||||
| Kvar_1446 | -203 | 3.8 | AAAGTTGTTTTGGATCACAGAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yejG | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2181 | -158 | 3.7 | AAACGTGACCACGCCCGCAGAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02614 | -204 | 3.8 | AAAGTTGTTTTGGATCACAGAA |
| Erwinia amylovora ATCC 49946 | EAM_2233 | -177 | 3.6 | AAATGAGCATTACTTCTCAAAA |
| Yersinia pestis KIM | y2914 | -238 | 4.4 | AAATGGGATCTGAATCCCAAAT |
| Serratia proteamaculans 568 | Spro_3250 | -214 | 4.2 | AAATGCGAGCTGAGTCGCAAAA |
| -121 | 4.1 | GCTTGTGATGTTTTTTACATTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2740 | -178 | 4 | ATTCGTGATCAGTTTGGCATTA |
| -101 | 3.8 | TGTTGTTTTTTTGTTCACGAAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2865 | -185 | 4.1 | AAATGAGAGATTGATCTCACTT |
| -183 | 3.6 | ATGAGAGATTGATCTCACTTTT | ||
| -141 | 3.8 | TAATGTAATACTATAAACACAA | ||
|
Position: -187
Score: 3.6 Sequence: TAGGGTAATCTCGTTCTCGTTT
Position: -129
Score: 4.2 Sequence: ATTTGTGCGTGACTGCACAAAT
Locus tag: Kvar_1452
|
||||
| Kvar_1452 | -187 | 3.6 | TAGGGTAATCTCGTTCTCGTTT | |
| -129 | 4.2 | ATTTGTGCGTGACTGCACAAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: spr | ||||
| Ortholog function: predicted peptidase, outer membrane lipoprotein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2175 | -130 | 4.1 | TTTTGTGCGTTAGTCCACAGAT |
| Salmonella typhimurium LT2 | STM2214 | -128 | 3.7 | ATTTGTGCGTTCCGCCACAGAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02608 | -292 | 3.6 | TAGGGTAATCTCGTTCTCGTTT |
| -234 | 4.2 | AATTGTGCGTGACTGCACAAAT | ||
| Enterobacter sp. 638 | Ent638_2771 | -250 | 3.6 | AATCGCTTTGTCTATCACAATT |
| Yersinia pestis KIM | y2908 | -128 | 3.7 | GAATGTGCGTTCATGCACATTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2735 | -159 | 3.9 | TAATGTGCATTCTGGCACACTT |
| Edwardsiella tarda EIB202 | ETAE_2298 | -131 | 4.4 | AAGTGTGTTCTGCTGCACAATT |
| Proteus mirabilis HI4320 | PMI0831 | -129 | 4.2 | TTACGTGCTTTAGAGCACGTTT |
|
Position: -177
Score: 3.5 Sequence: AAGTGTGCAGTACCTCTAAGTT
Locus tag: Kvar_1463
|
||||
| Kvar_1463 | -177 | 3.5 | AAGTGTGCAGTACCTCTAAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fruB | ||||
| Ortholog function: PTS system, fructose-specific IIA/FPr component | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2169 | -178 | 4.3 | AATTGTGCAGCACATCAAACTT |
| Salmonella typhimurium LT2 | STM2206 | -177 | 4.6 | AAATGTGCTTCACCTCAAAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_00613 | -50 | 4.1 | AAGTGTGCTTTATCTCTAAATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02600 | -177 | 3.5 | AAGTGTGCAGTACCTCTAAGTT |
| Enterobacter sp. 638 | Ent638_2763 | -178 | 4.3 | AAATGTGCTGCACTTCTAAATT |
| Erwinia amylovora ATCC 49946 | EAM_2223 | -179 | 4.4 | AAATGTGCTGGCTGTCAAAAAT |
| Yersinia pestis KIM | y2887 | -178 | 4.1 | AAATGTGCGGAATGTCAAAAAT |
| Serratia proteamaculans 568 | Spro_3230 | -177 | 4 | AAGTGTGCGTGAGGTCAAAAAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2729 | -180 | 4.1 | AAATGTGCGTGATGTCAAAATT |
| Edwardsiella tarda EIB202 | ETAE_2303 | -199 | 4.1 | AAATGTGCTGAAGGTCTAAAAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1992 | -180 | 4.7 | AAATGTGAGTAATCTCAAAAAA |
|
Position: -84
Score: 3.5 Sequence: TTCTGTGCGCCACCTCACGCAC
Locus tag: Kvar_1472
|
||||
| Kvar_1472 | -84 | 3.5 | TTCTGTGCGCCACCTCACGCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: folE | ||||
| Ortholog function: GTP cyclohydrolase I | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2153 | -101 | 3.8 | TTATGTGCGCCGCCTCACGCAC |
| Salmonella typhimurium LT2 | STM2193 | -101 | 4 | TTATGTGCGCTACCTCACGCAC |
| Citrobacter koseri ATCC BAA-895 | CKO_00638 | -98 | 3.8 | TTATGTGCGCCGCCTCACGCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02591 | -84 | 3.5 | TTCTGTGCGCCACCTCACGCAC |
| Enterobacter sp. 638 | Ent638_2753 | -84 | 3.9 | TTATGTGCGCCACCTCACGCAC |
| Serratia proteamaculans 568 | Spro_1560 | -121 | 4.3 | AATCTTGACCGGGTTCACGTTA |
| Proteus mirabilis HI4320 | PMI0639 | -86 | 4.9 | TAATGTGATTCAGCTCATCTAA |
|
Position: -109
Score: 3.6 Sequence: CCGTGTGACCTCACTCACGTAG
Position: -33
Score: 3.6 Sequence: TGACGTGCTGTAATTCTCTTAA
Locus tag: Kvar_1474
|
||||
| Kvar_1474 | -109 | 3.6 | CCGTGTGACCTCACTCACGTAG | |
| -33 | 3.6 | TGACGTGCTGTAATTCTCTTAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: galS | ||||
| Ortholog function: Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2151 | -146 | 3.5 | GATAACGATCTGGATCACATTC |
| -95 | 3.9 | TGCTGTGACTCGATTCACGAAG | ||
| Salmonella typhimurium LT2 | STM2191 | -154 | 3.5 | GATAACGATCTGGATCACATTC |
| -103 | 3.5 | CCCTGTGATGTTTCTCACGCAG | ||
| -38 | 3.3 | ATTTGTGAGCATTTTTGAACTC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00640 | -157 | 3.5 | GATAACGATCTGGATCACATTC |
| -106 | 3.4 | CCCTGTGACCTTACTCACGTAG | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02589 | -160 | 3.3 | GATAACGATCTCGATCACAATC |
| -109 | 3.4 | CCGTGTGACCTCACTCACGCAG | ||
| -33 | 3.6 | TGACGTGCTGTAATTCTCTTAA | ||
| Enterobacter sp. 638 | Ent638_2751 | -160 | 3.4 | GATAACGATCTGGATCACAATC |
| -109 | 4.1 | CTGTGTGAGCTTCTTCACGTAG | ||
| Erwinia amylovora ATCC 49946 | EAM_2208 | -110 | 3.4 | GGCTGTGAGGTTTCTCACGTAG |
| Serratia proteamaculans 568 | Spro_1562 | -135 | 3.4 | AATTGAGATCTGGCGCAGGTAG |
| -84 | 3.5 | TCCTGTGACGGGATTCACGCAG | ||
|
Position: -269
Score: 4.8 Sequence: ATTTGTGAGTAAATTCACAGTA
Locus tag: Kvar_1475
|
||||
| Kvar_1475 | -269 | 4.8 | ATTTGTGAGTAAATTCACAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mglB | ||||
| Ortholog function: Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2150 | -270 | 4.5 | ATCTGTGAGTGATTTCACAGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_00641 | -270 | 4.7 | ATATGTGAGTAAATTCACAGTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02588 | -239 | 4.8 | ATTTGTGAGTAAATTCACAGTA |
| Enterobacter sp. 638 | Ent638_2750 | -271 | 4.4 | ATCTGTGAGTAAATTCACAGTA |
| Yersinia pestis KIM | y2662 | -212 | 4.4 | ATCTGTGAGAAAATTCACAGTT |
| Serratia proteamaculans 568 | Spro_1563 | -229 | 4.4 | ATCTGTGAGAAAATTCACAGAT |
|
Position: -78
Score: 4.6 Sequence: CAATGAGATATTCATCACATAT
Locus tag: Kvar_1481
|
||||
| Kvar_1481 | -78 | 4.6 | CAATGAGATATTCATCACATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cdd | ||||
| Ortholog function: cytidine deaminase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2143 | -128 | 4.3 | ATTTGCGATGCGTCGCGCATTT |
| -78 | 5.1 | TAATGAGATTCAGATCACATAT | ||
| Salmonella typhimurium LT2 | STM2183 | -128 | 4.2 | ATTTGCGATACGTCGCGCATTT |
| -78 | 4.8 | CAATGAGATTTAGATCACATAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00646 | -128 | 4.3 | ATTTGCGATGCGTCGCGCATTT |
| -78 | 4.8 | CAATGAGATTTGGATCACATAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02584 | -78 | 4.4 | GAATGAGATATTCATCACATAT |
| Enterobacter sp. 638 | Ent638_2746 | -127 | 4.2 | ATTTGCGATGCGTCGCGCAATT |
| -77 | 4.9 | TAATGAGAACTGGATCACATAT | ||
| Erwinia amylovora ATCC 49946 | EAM_2202 | -124 | 3.9 | ACTTGCGATAAGTCTCTCATTT |
| -104 | 4.1 | TTTGGTGATGCATTTCATTTAT | ||
| -74 | 4.7 | TAGAGCGATTTAGATCACATAT | ||
| Yersinia pestis KIM | y2657 | -75 | 5 | TAATGAGATATAAATCACAATT |
| Serratia proteamaculans 568 | Spro_1568 | -127 | 4.1 | ACTTGCGATACATCTCGCAATT |
| -77 | 4.5 | TAAAGAGATTTACATCACACTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2830 | -130 | 4.6 | AATTGAGATACATCTCGCATTT |
| -79 | 4.5 | TAAAGAGATTCCGATCACAATT | ||
| Edwardsiella tarda EIB202 | ETAE_1162 | -76 | 4.9 | AAAAGTGATTATTATCACAAAT |
| Proteus mirabilis HI4320 | PMI0643 | -132 | 4.4 | ATTTGAGATGTATCTCCCAATT |
| -82 | 5.1 | AAATATGATTTTAATCACATAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1547 | -75 | 4.7 | CTATATGATATTTATCACATTA |
|
Position: -68
Score: 5 Sequence: TGATGTGATCGGTAGCACATTT
Locus tag: Kvar_1483
|
||||
| Kvar_1483 | -68 | 5 | TGATGTGATCGGTAGCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yohJ | ||||
| Ortholog function: LrgA family protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2141 | -68 | 4.9 | TAATGTGATCGGTAGCACGTTT |
| Salmonella typhimurium LT2 | STM2181 | -68 | 4.6 | TGATGTGATCGGTAGCACGTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_00648 | -68 | 4.6 | TGATGTGATCGGTAGCACGTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02582 | -68 | 5 | TGATGTGATCGGTAGCACATTT |
| Enterobacter sp. 638 | Ent638_2744 | -68 | 4.7 | TGATGTGATCCGTAGCACGTTT |
| Yersinia pestis KIM | y2654 | -32 | 4.7 | TAGTGTGATGGGTAGCACAGAA |
| Serratia proteamaculans 568 | Spro_1570 | -62 | 4.3 | ATTTGTGGCGGAGGTCACAGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2828 | -69 | 4.5 | ATTCGTGATCTGTGGCACGTAA |
| Edwardsiella tarda EIB202 | ETAE_1164 | -68 | 4.9 | TGATGTGATCAGTAGCACATTT |
| Proteus mirabilis HI4320 | PMI0645 | -71 | 5.2 | TATTGTGATCCATAGCACACTT |
|
Position: -154
Score: 4.2 Sequence: AGTCGCGATCTTAATCACGTTT
Locus tag: Kvar_1486
|
||||
| Kvar_1486 | -154 | 4.2 | AGTCGCGATCTTAATCACGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: arbG | ||||
| Ortholog function: transcriptional antiterminator, BglG | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3723 | -202 | 3.7 | AACTGCGAGCATGGTCATATTT |
| -185 | 3.6 | TATTTTTATCAATAGCGCATTG | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02579 | -154 | 4.2 | AGTCGCGATCTTAATCACGTTT |
| Enterobacter sp. 638 | Ent638_2741 | -153 | 3.9 | GATCACGATCTAAATCACATTT |
|
Position: -61
Score: 5.1 Sequence: TAATGTGATGCTTGTCACGTTT
Locus tag: Kvar_1677
|
||||
| Kvar_1677 | -61 | 5.1 | TAATGTGATGCTTGTCACGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: b1963 | ||||
| Ortholog function: orf, hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1963 | -287 | 4.6 | TGGTGTGATCAGGCGCACATTA |
| Salmonella typhimurium LT2 | STM1994 | -70 | 5.5 | AAATGTGATTAATATCACATTA |
| -34 | 4.4 | TCATATGACTTACATCACAAAA | ||
|
Position: -193
Score: 3.7 Sequence: TGTTTTTAATCCGCTCACACTA
Locus tag: Kvar_1686
|
||||
| Kvar_1686 | -193 | 3.7 | TGTTTTTAATCCGCTCACACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rcsA | ||||
| Ortholog function: Colanic acid capsular biosynthesis activation accesory protein RcsA, co-regulator with RcsB | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1951 | -201 | 4 | TGTTTTAAGCTCACTCACATAT |
| Salmonella typhimurium LT2 | STM1982 | -201 | 4 | TGTTTTTACTTCACTCACATAA |
| Citrobacter koseri ATCC BAA-895 | CKO_00992 | -200 | 4.1 | TGTTTTTACCTTACTCACATAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02421 | -195 | 3.7 | TGTTTTTAATTCGGTCACACTA |
| Enterobacter sp. 638 | Ent638_2542 | -206 | 4.3 | TGTTTTTATGCCCTTCACAATA |
|
Position: -161
Score: 4 Sequence: CGATGTGATAATGCTCTCGTAT
Position: -72
Score: 3.9 Sequence: TGTTTTGATGCCGATAAAATTG
Locus tag: Kvar_1709
|
||||
| Kvar_1709 | -161 | 4 | CGATGTGATAATGCTCTCGTAT | |
| -72 | 3.9 | TGTTTTGATGCCGATAAAATTG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: araF | ||||
| Ortholog function: L-arabinose-binding periplasmic protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1901 | -163 | 4.2 | CGATGTGATATTGCTCTCCTAT |
| Citrobacter koseri ATCC BAA-895 | CKO_01050 | -164 | 4 | CGGTGTGATGCCGCTCTCCTAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02396 | -161 | 4 | CGATGTGATAATGCTCTCGTAT |
| -72 | 3.6 | TGTTTTGATGACGATTAAATTG | ||
| Enterobacter sp. 638 | Ent638_2476 | -162 | 3.7 | CGGTGTGATGGCGCTCTCTTAT |
| Erwinia amylovora ATCC 49946 | EAM_1698 | -251 | 4.3 | TTATGTGATGGCCTTCATATGT |
| Yersinia pestis KIM | y2096 | -283 | 4.3 | TTTTGTGATGTCAGTCAAAAGT |
| Serratia proteamaculans 568 | Spro_2245 | -251 | 3.8 | TTTTGTGACGGCTGTCATAAGT |
|
Position: -152
Score: 3.5 Sequence: AAATACGACTCTGATCATGTAA
Locus tag: Kvar_1741
|
||||
| Kvar_1741 | -152 | 3.5 | AAATACGACTCTGATCATGTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hexR | ||||
| Ortholog function: Phosphogluconate repressor HexR, RpiR family | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1853 | -151 | 3.9 | AAATCTGACACTGATCATGTTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02368 | -134 | 3.6 | AAATACGACCCTGATCATGTAA |
| Yersinia pestis KIM | y2245 | -152 | 3.7 | AAATTAGACACAGGTCATATTA |
| Proteus mirabilis HI4320 | PMI1156 | -58 | 3.6 | AACCGTTATAGATTTCTCCTTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2121 | -132 | 3.7 | TTTTATGAAAAACATTAAATTA |
|
Position: -225
Score: 3.7 Sequence: TTACATGATCAGAGTCGTATTT
Locus tag: Kvar_1742
|
||||
| Kvar_1742 | -225 | 3.7 | TTACATGATCAGAGTCGTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: zwf | ||||
| Ortholog function: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1852 | -208 | 3.9 | TAACATGATCAGTGTCAGATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02367 | -225 | 3.8 | TTACATGATCAGGGTCGTATTT |
| Yersinia pestis KIM | y2244 | -231 | 4.1 | TAATATGACCTGTGTCTAATTT |
| Proteus mirabilis HI4320 | PMI1157 | -225 | 3.7 | AAGTATGACCTGTGTCTAACTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2122 | -234 | 4.2 | TAATTTAATGTTTTTCATAAAA |
|
Position: -163
Score: 3.8 Sequence: TTAACGGATCTTCATCACATTA
Locus tag: Kvar_1849
|
||||
| Kvar_1849 | -163 | 3.8 | TTAACGGATCTTCATCACATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: manX | ||||
| Ortholog function: PTS enzyme IIAB, mannose-specific | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02333 | -163 | 3.8 | TTAACGGATCTTCATCACATTA |
| Enterobacter sp. 638 | Ent638_2386 | -166 | 3.8 | ATTACGGATCTTCATCACATAA |
|
Position: -97
Score: 3.7 Sequence: AATAGTGACGCGCTTCGCAACC
Locus tag: Kvar_1867
|
||||
| Kvar_1867 | -97 | 3.7 | AATAGTGACGCGCTTCGCAACC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadD | ||||
| Ortholog function: long-chain-fatty-acid--CoA ligase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1805 | -131 | 3.7 | AATAGTGACGCGCTTCGCAACC |
| Salmonella typhimurium LT2 | STM1818 | -131 | 3.7 | AATAGTGACGCGCTTCGCAACC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02322 | -97 | 3.7 | AATAGTGACGCGCTTCGCAACC |
| Erwinia amylovora ATCC 49946 | EAM_1956 | -130 | 3.9 | TTTAGTGATGCGCTTCGCAACC |
| Yersinia pestis KIM | y2236 | -80 | 4.1 | AATAGTGATGTATATCTCAACC |
| Serratia proteamaculans 568 | Spro_2760 | -99 | 3.9 | ATTAGTGACGTACATCGCAACC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2372 | -132 | 3.8 | ATTAGTGATCGTTCTCGCAACC |
| -75 | 3.7 | TAAAATAATGTTAATAACAATA | ||
| Proteus mirabilis HI4320 | PMI1166 | -121 | 4.4 | TTTAGTGATACACTTCGCATCT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2134 | -288 | 3.8 | AAATGCTATCTTAAGCAAAAAA |
| -137 | 4 | ATTAGTGATGTGTATCTCAACC | ||
|
Position: -237
Score: 4 Sequence: TATGGTGACTTAACTCACAGCA
Locus tag: Kvar_1879
|
||||
| Kvar_1879 | -237 | 4 | TATGGTGACTTAACTCACAGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ycgB | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1188 | -235 | 4.4 | TATGGTGAGCTGGCTCACATCT |
| Salmonella typhimurium LT2 | STM1804.S | -243 | 4.9 | TATGGTGACGTGCTTCACATAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02310 | -174 | 4 | TATGGTGACTTAACTCACAGCA |
| Enterobacter sp. 638 | Ent638_2364 | -236 | 4.2 | TATGGTGACTTACCTCACACCT |
|
Position: -106
Score: 4.1 Sequence: TGCTGTGAGTTAAGTCACCATA
Locus tag: Kvar_1880
|
||||
| Kvar_1880 | -106 | 4.1 | TGCTGTGAGTTAAGTCACCATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dadA | ||||
| Ortholog function: D-amino acid dehydrogenase small subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1189 | -116 | 4.7 | AGATGTGAGCCAGCTCACCATA |
| Salmonella typhimurium LT2 | STM1803 | -107 | 4.6 | ATATGTGAAGCACGTCACCATA |
| Citrobacter koseri ATCC BAA-895 | CKO_01193 | -107 | 4.5 | AGATGTGAGGTGCGTCACCATA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02309 | -106 | 4.1 | TGCTGTGAGTTAAGTCACCATA |
| Enterobacter sp. 638 | Ent638_2363 | -107 | 4.3 | AGGTGTGAGGTAAGTCACCATA |
| Serratia proteamaculans 568 | Spro_2746 | -113 | 4.6 | AATTGTGAATGTTGTCACGTTT |
| Proteus mirabilis HI4320 | PMI1509 | -121 | 4.7 | AAATGTGATTTGACTCTAAAAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2561 | -114 | 5.4 | AATTGTGATCTAAATCATAAAT |
|
Position: -82
Score: 4.6 Sequence: CTTTGTGAGAGCTCTCACATAA
Locus tag: Kvar_1907
|
||||
| Kvar_1907 | -82 | 4.6 | CTTTGTGAGAGCTCTCACATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tdcA | ||||
| Ortholog function: Threonine catabolic operon transcriptional activator TdcA | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3118 | -225 | 4 | TGATGTTATCGCCATAAAATAT |
| -82 | 4.7 | ATTTGTGAGTGGTCGCACATAT | ||
| Salmonella typhimurium LT2 | STM3245 | -188 | 3.9 | TTTTTTGATTGAAATCAGGCTA |
| -83 | 4.7 | ATTTGTGAGTGGTCGCACATAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04518 | -225 | 4.3 | ATATGTTATCGCCATAAAATAT |
| -187 | 3.9 | TTTTTTGACAAAAATCATGATA | ||
| -82 | 4.6 | ATTTGTGAGTAGTCGCACATAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02296 | -82 | 4.6 | CTTTGTGAGAGCTCTCACATAA |
| -54 | 3.7 | AATTGCGATTTGTTACACTTTC | ||
| Enterobacter sp. 638 | Ent638_3565 | -82 | 3.9 | ATTTGTGAGTAACAGCACATCC |
|
Position: -152
Score: 4.3 Sequence: TTTTGTGATCTGGATTGTAGTA
Locus tag: Kvar_1927
|
||||
| Kvar_1927 | -152 | 4.3 | TTTTGTGATCTGGATTGTAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dgoR | ||||
| Ortholog function: GntR domain protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4479 | -154 | 4.2 | TTTTGTGATCTAAATTGTAGTA |
| Salmonella typhimurium LT2 | STM3830 | -154 | 4.2 | TTTTGTGATCTAAATTGTAGTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04098 | -154 | 4.1 | TTTTGTGATCCAAATTGTAGTA |
| Enterobacter sp. 638 | Ent638_0006 | -154 | 4.2 | TTTTGTGATCCAGATTGTAGTA |
| Serratia proteamaculans 568 | Spro_0041 | -103 | 4.2 | TTTTGTGATCTTGATTGTAGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4419 | -164 | 4.2 | TTTTGTGATCCAGATTGTAGTA |
|
Position: -100
Score: 4.2 Sequence: TAATGTGATCGTGGGCGCACTC
Locus tag: Kvar_1941
|
||||
| Kvar_1941 | -100 | 4.2 | TAATGTGATCGTGGGCGCACTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ychH | ||||
| Ortholog function: membrane protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1205 | -105 | 4.5 | AATTGTGATCACGCCCGCACAT |
| Salmonella typhimurium LT2 | STM1782 | -105 | 4.4 | ATTTGTGATCGCACCCGCACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_01260 | -104 | 4.1 | AATTGTGATCGCCCACGCACTC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02241 | -100 | 4.1 | TAATGTGATCGTGGACGCACTC |
| Enterobacter sp. 638 | Ent638_2343 | -119 | 3.7 | TGTTGTGACGAGAGTCATTAAT |
| -101 | 4 | TAATGTGATCATTCACGCAACT | ||
| Erwinia amylovora ATCC 49946 | EAM_1581 | -97 | 3.9 | AAATGTGATCGCTGACTCATCA |
| Yersinia pestis KIM | y2296 | -145 | 3.9 | AGTTGTGATCGCTACCGCAACA |
| Serratia proteamaculans 568 | Spro_1985 | -117 | 4.2 | ATTTGTGATCGCCTACGCAATC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2185 | -275 | 3.6 | TAGCGTGATTATGAGAACGCTA |
| -117 | 3.8 | ATCTGTGATCCCTCCCGCAATC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2065 | -189 | 4.1 | AGTTGTGATCGTGTCCGCAATG |
|
Position: -126
Score: 3.7 Sequence: TTTTTTGATCAAAATCAGCATC
Position: -89
Score: 3.7 Sequence: TGGTGTGATGCACAGAGCAAAG
Position: -70
Score: 3.7 Sequence: AAGTGTGAACAATATCACGCGA
Locus tag: Kvar_1956
|
||||
| Kvar_1956 | -126 | 3.7 | TTTTTTGATCAAAATCAGCATC | |
| -89 | 3.7 | TGGTGTGATGCACAGAGCAAAG | ||
| -70 | 3.7 | AAGTGTGAACAATATCACGCGA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: CKO_01286 | ||||
| Ortholog function: hypothetical protein | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01286 | -122 | 3.7 | TTTTTTGATCAAAATCAGCATC |
| -66 | 4.4 | AAATGTGAACAACATCACGCAG | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02226 | -125 | 3.7 | TTTTTTGATCAAAATCAGCATC |
| -88 | 3.7 | TGGTGTGATGCACAGAGCAAAG | ||
| -69 | 3.7 | AAGTGTGAACAATATCACGCGA | ||
| Enterobacter sp. 638 | Ent638_2329 | -125 | 3.7 | TTTTTTGATCAAAATCAGCATC |
| -69 | 4.3 | AATTGTGAACAACATCACGCTC | ||
|
Position: -237
Score: 4.7 Sequence: ATACTTGATCTAAATCACGTAT
Locus tag: Kvar_1983
|
||||
| Kvar_1983 | -237 | 4.7 | ATACTTGATCTAAATCACGTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhE | ||||
| Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1241 | -241 | 5 | AAATTTGATTTGGATCACGTAA |
| Salmonella typhimurium LT2 | STM1749 | -242 | 4.9 | AATCTTGATTTAGATCACACAA |
| Citrobacter koseri ATCC BAA-895 | CKO_01318 | -242 | 4.9 | AAATTTGATCTGGATCACGCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02199 | -237 | 4.7 | ATACTTGATCTAAATCACGTAA |
| Enterobacter sp. 638 | Ent638_2304 | -253 | 4.1 | TAAATTGATTCAGATCATGTTT |
| Erwinia amylovora ATCC 49946 | EAM_1900 | -223 | 3.9 | ATTGATGATCTGCATCATCTTT |
| Yersinia pestis KIM | y2023 | -286 | 5.3 | TTTTGTGATTTAAATCACGAAA |
| Serratia proteamaculans 568 | Spro_2704 | -278 | 5.1 | TTTTATGATTTAAATCACAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2326 | -315 | 4.5 | AAGTTCGATGTTGATCACAAAA |
| Edwardsiella tarda EIB202 | ETAE_1508 | -265 | 5 | TTTCGTGACCTTAATCACAAAA |
| Proteus mirabilis HI4320 | PMI1486 | -246 | 5.4 | TATTGTGATGTAGATCACTTTA |
| -187 | 3.7 | AAAGGAGATCTTTTTAAAATAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2496 | -237 | 3.7 | TATTTTTATTAGATTAAAAATT |
| -138 | 4.6 | TTATGTGATTAAGATCAATATA | ||
|
Position: -261
Score: 4.8 Sequence: ATACGTGATTTAGATCAAGTAT
Position: 20
Score: 3.8 Sequence: TTTTGCTACCTATTTCAAGTTT
Locus tag: Kvar_1984
|
||||
| Kvar_1984 | -261 | 4.8 | ATACGTGATTTAGATCAAGTAT | |
| 20 | 3.8 | TTTTGCTACCTATTTCAAGTTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ychE | ||||
| Ortholog function: putative channel protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1242 | -257 | 5.1 | TTACGTGATCCAAATCAAATTT |
| Salmonella typhimurium LT2 | STM1748 | -256 | 4.8 | TTGTGTGATCTAAATCAAGATT |
| Citrobacter koseri ATCC BAA-895 | CKO_01319 | -167 | 5 | TTGCGTGATCCAGATCAAATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02198 | -261 | 4.8 | TTACGTGATTTAGATCAAGTAT |
| Enterobacter sp. 638 | Ent638_2303 | -256 | 4 | AAACATGATCTGAATCAATTTA |
| Erwinia amylovora ATCC 49946 | EAM_1899 | -158 | 3.8 | AAAGATGATGCAGATCATCAAT |
| Serratia proteamaculans 568 | Spro_2703 | -268 | 5.2 | TTTTGTGATTTAAATCATAAAA |
| Proteus mirabilis HI4320 | PMI1485 | -290 | 5.3 | TAAAGTGATCTACATCACAATA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2495 | -295 | 4.9 | TATATTGATCTTAATCACATAA |
|
Position: -63
Score: 4 Sequence: TATCGTGATGCGCATCACTTCC
Locus tag: Kvar_2029
|
||||
| Kvar_2029 | -63 | 4 | TATCGTGATGCGCATCACTTCC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aroH | ||||
| Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1704 | -106 | 4.3 | AGGTGTGACACACCTCGCACTT |
| -64 | 4 | TATCGTGATGCGCATCACTTCC | ||
| Salmonella typhimurium LT2 | STM1347 | -106 | 4.3 | AGGTGTGACACGCCTCGCACTT |
| -64 | 4 | TATCGTGATGCCCATCACTTCC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_01728 | -115 | 4.3 | AGGTGTGAAACGCCTCGCATTT |
| -64 | 4.3 | TATTGTGATGCCCATCACTTCC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02162 | -63 | 4 | TATCGTGATGCGCATCACTTCC |
| Enterobacter sp. 638 | Ent638_1743 | -126 | 3.6 | AGTTATGATCGCTTTCACTCTC |
| -62 | 3.6 | TAAGGTGATGCCCATCACTTCC | ||
| Yersinia pestis KIM | y1928 | -64 | 4.3 | TATTGTGATCGCCATCACTTCC |
| Serratia proteamaculans 568 | Spro_2172 | -135 | 3.9 | TTTTGTGCTTTTTTTAGCGATT |
| -64 | 4.3 | TATTGTGATCGCCATCACTTCC | ||
| Edwardsiella tarda EIB202 | ETAE_1792 | -63 | 4 | TATCGTGATCCCCATCACTTCC |
| Proteus mirabilis HI4320 | PMI1423 | -55 | 3.9 | TATTGTGATCTTAATCACTGGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2630 | -62 | 3.8 | TATTGTAATTTCCATTATCTAT |
|
Position: -56
Score: 3.6 Sequence: TTGTGTAATACTTGTAACGCTA
Locus tag: Kvar_2141
|
||||
| Kvar_2141 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lpp | ||||
| Ortholog function: major outer membrane lipoprotein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1677 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Salmonella typhimurium LT2 | STM1377 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01710 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02134 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Enterobacter sp. 638 | Ent638_1767 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Erwinia amylovora ATCC 49946 | EAM_1656 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Serratia proteamaculans 568 | Spro_2186 | -55 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1866 | -56 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Edwardsiella tarda EIB202 | ETAE_1852 | -55 | 3.6 | TTGTGTAATACTTGTAACGCTA |
| Proteus mirabilis HI4320 | PMI1409 | -200 | 4.4 | TTTTGTGAAATAACACGCATTT |
|
Position: -80
Score: 4.1 Sequence: ATCCGTGAGATTTCTCACAAAG
Locus tag: Kvar_2302
|
||||
| Kvar_2302 | -80 | 4.1 | ATCCGTGAGATTTCTCACAAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cfa | ||||
| Ortholog function: cyclopropane fatty acyl phospholipid synthase | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01999 | -230 | 4.1 | ATCCGTGAGATTTCTCACAAAG |
|
Position: -74
Score: 3.8 Sequence: TTTTGCTATCTGGTTATCAAAT
Locus tag: Kvar_2353
|
||||
| Kvar_2353 | -74 | 3.8 | TTTTGCTATCTGGTTATCAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ydcI | ||||
| Ortholog function: putative transcriptional regulators, LysR family | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1422 | -71 | 3.7 | TTTTGCAATCAAGTTATCATAA |
| Salmonella typhimurium LT2 | STM1625 | -71 | 3.6 | TTTTGCTATCAGGTTATCAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_01457 | -71 | 3.6 | TTTTGCTATCAGGTTATCAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01950 | -75 | 3.8 | TTTTGCTATCTGGTTATCAAAT |
| Enterobacter sp. 638 | Ent638_1964 | -71 | 3.6 | TTTTGCTATCAGGTTATCAAAA |
|
Position: -158
Score: 4.2 Sequence: AACTGTGATACACCTCCCAAAG
Locus tag: Kvar_2577
|
||||
| Kvar_2577 | -158 | 4.2 | AACTGTGATACACCTCCCAAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: CKO_00488 | ||||
| Ortholog function: LacI-family transcriptional regulator | ||||
| Salmonella typhimurium LT2 | STM2345 | -192 | 4 | AGCTGCGATCGTTATCACAAAG |
| -143 | 4.6 | AATTGTGATAGCGCTATCAAAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00488 | -192 | 4.6 | ATCTGTGATCATATTCACAAAG |
| -143 | 4.5 | ATATGTGATAGCGCTATCAAAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01748 | -155 | 4.2 | AACTGTGATACACCTCCCAAAG |
| -53 | 3.6 | AGTTATAATGCGATTCGCAGAT | ||
| Enterobacter sp. 638 | Ent638_2847 | -178 | 4.1 | AGCTGCGATCAAGATCACAAAG |
| -129 | 4.6 | AATTGTGATAGCGCTATCAAAT | ||
| Yersinia pestis KIM | y1619 | -208 | 5.4 | TAATGTGATCTGGATCTCAATT |
| -158 | 4.6 | ATTTGTGATAGCGCTATCATTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3772 | -246 | 4.5 | TAATGTGATTAACATCCAAAAA |
| -196 | 4 | AACTGTGACCGGCTTAGCACAA | ||
| Edwardsiella tarda EIB202 | ETAE_3025 | -210 | 4.3 | TTTCGTGATAGCGCTATCATTT |
| Proteus mirabilis HI4320 | PMI1778 | -139 | 4.2 | AATTGTGATAGCGCTATTATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1978 | -195 | 3.8 | GCTAGTGATATTAGTCACAAAT |
| -145 | 4.7 | AATTGTGATAGCGCTATCATTT | ||
|
Position: -94
Score: 5.1 Sequence: AAATGAGATGCAGATCACAAAA
Locus tag: Kvar_2713
|
||||
| Kvar_2713 | -94 | 5.1 | AAATGAGATGCAGATCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sotB | ||||
| Ortholog function: Probable sugar efflux transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1528 | -94 | 4.9 | AAACGCGATCCAGATCACAAAT |
| Salmonella typhimurium LT2 | STM1522 | -94 | 4.5 | AAATGAGAAGCAGGTCACAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_01548 | -94 | 4.8 | TAATGAGACATACATCACAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01628 | -94 | 4.8 | AAATGAGACGCAGATCACAAAA |
| Enterobacter sp. 638 | Ent638_2000 | -95 | 4.9 | TTTTGAGATCTGCGTCACATAA |
|
Position: -116
Score: 3.8 Sequence: TTTCGTGATCGTCTGTTCATTT
Locus tag: Kvar_2732
|
||||
| Kvar_2732 | -116 | 3.8 | TTTCGTGATCGTCTGTTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lacZ | ||||
| Ortholog function: beta-D-galactosidase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0344 | -110 | 4.7 | TAATGTGAGTTAGCTCACTCAT |
| Citrobacter koseri ATCC BAA-895 | CKO_02825 | -110 | 4.4 | TTGTGTGAGTCAGTTCACTCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_pKPN3p05871 | -109 | 4.6 | TAATGTGAGTCAGCTCACTCAT |
| Enterobacter sp. 638 | Ent638_0928 | -100 | 4.4 | TTTTGTGATCGACTTCGCTTTG |
| Erwinia amylovora ATCC 49946 | EAM_0926 | -94 | 3.8 | TGTTGCGATAGCCATCACATCC |
| Yersinia pestis KIM | y1817 | -168 | 4 | ACATGTGCGACAGATCACATTC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1490 | -149 | 4.1 | CTTTGTGATCGCTTCCACTTTA |
| -92 | 4.5 | ATATGTTATGGAAAACACAAAT | ||
|
Position: -191
Score: 4.7 Sequence: TTATGTGAGAGCTATCACGAAT
Locus tag: Kvar_2737
|
||||
| Kvar_2737 | -191 | 4.7 | TTATGTGAGAGCTATCACGAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ygbI | ||||
| Ortholog function: Hypothetical transcriptional regulator ygbI | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2735 | -166 | 3.7 | TTGTTTGATATTGTGAATATAA |
| -127 | 5.2 | TATGGTGATCTGATTCACATAA | ||
| Salmonella typhimurium LT2 | STM2919 | -128 | 4 | TGCGGTGAGTTGTTTCACAAAA |
| -87 | 3.6 | TTTTGTGAAGGCAATCCTCATA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01606 | -271 | 3.6 | TAATGTGATTTAATGATAGAAT |
| -230 | 4.7 | ATATGTGAGAGTTATCACGAAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_pKPN4p07051 | -233 | 3.6 | TAATGTGATTTAATGATAGAAT |
| -192 | 4.7 | TTATGTGAGAGTTATCACGAAT | ||
| Erwinia amylovora ATCC 49946 | EAM_1104 | -238 | 4.5 | ATTAGTGATAAACTTCACATCA |
| Serratia proteamaculans 568 | Spro_1493 | -211 | 3.9 | ATCAGCGATCGTTGTCACAATT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4325 | -267 | 4.8 | TGTGGTGATTTTTATCACATAA |
| Edwardsiella tarda EIB202 | ETAE_1921 | -132 | 3.9 | AACCGTGTTTATCCTCACAAAT |
|
Position: -91
Score: 5 Sequence: ATTCGTGATAGCTCTCACATAA
Locus tag: Kvar_2738
|
||||
| Kvar_2738 | -91 | 5 | ATTCGTGATAGCTCTCACATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ygbJ | ||||
| Ortholog function: D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2736 | -90 | 4.9 | TTATGTGAATCAGATCACCATA |
| Salmonella typhimurium LT2 | STM2918 | -90 | 4 | TTTTGTGAAACAACTCACCGCA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01605 | -91 | 5 | ATTCGTGATAACTCTCACATAT |
| Erwinia amylovora ATCC 49946 | EAM_1106 | -90 | 4.4 | TGATGTGAAGTTTATCACTAAT |
| Serratia proteamaculans 568 | Spro_1492 | -92 | 4.1 | AATTGTGACAACGATCGCTGAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4327 | -92 | 4.5 | TTATGTGATAAAAATCACCACA |
| Edwardsiella tarda EIB202 | ETAE_1922 | -93 | 3.9 | ATTTGTGAGGATAAACACGGTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2507 | -147 | 3.8 | ATAAATAATATAAATCAAATAA |
| -90 | 3.7 | GAATGTGATAACCATCGTGTAT | ||
|
Position: -105
Score: 3.8 Sequence: AAATGTGCGGTAAATCACAAGG
Locus tag: Kvar_2783
|
||||
| Kvar_2783 | -105 | 3.8 | AAATGTGCGGTAAATCACAAGG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mlc | ||||
| Ortholog function: ROK family transcriptional regulatory protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1594 | -108 | 4.1 | AAATGTGCTGTTAATCACATGC |
| Salmonella typhimurium LT2 | STM1488 | -65 | 3.8 | AGTATTGAAGTGTTTCACCATA |
| Citrobacter koseri ATCC BAA-895 | CKO_01593 | -107 | 3.6 | AAaTGTGcagTAaATCACAcgg |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01574 | -104 | 3.8 | AAATGTGCGGTAAATCACAAGG |
| Enterobacter sp. 638 | Ent638_1919 | -107 | 3.8 | AAATGTGCGGTAAATCACAAGG |
| Erwinia amylovora ATCC 49946 | EAM_1710 | -143 | 4.9 | TTATGTGCTGTAAATCACATTC |
| Yersinia pestis KIM | y2110 | -146 | 4.8 | TTATGTGCAGCAAATCACATAA |
| Serratia proteamaculans 568 | Spro_2283 | -111 | 4.8 | ATTTGTGCAGCAAATCACATAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2258 | -226 | 4.4 | ATATGCGCGCTAAATCACATAA |
| Edwardsiella tarda EIB202 | ETAE_1713 | -113 | 4.8 | ATTTGTGCACTTAATCACATAA |
| Proteus mirabilis HI4320 | PMI1292 | -126 | 4.7 | ATATGTGCTTTCCATCACGATT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2226 | -119 | 4.8 | TTTCGTGCTGAATATCACATAT |
|
Position: -94
Score: 5.1 Sequence: TTATGTGATTTTTATCGCACTA
Locus tag: Kvar_2847
|
||||
| Kvar_2847 | -94 | 5.1 | TTATGTGATTTTTATCGCACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malX | ||||
| Ortholog function: PTS family enzyme IIC/enzyme IIB | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1621 | -154 | 4.1 | TTATGTGACAGATAAAACGTTT |
| -94 | 4.4 | TAATGTGATTTATGCCTCACTA | ||
| Enterobacter sp. 638 | Ent638_1827 | -96 | 4.2 | GAATGTGATTCAGAGCGCACTA |
|
Position: -113
Score: 4.4 Sequence: TTTTATGAATCAGCTCACAGAA
Locus tag: Kvar_2858
|
||||
| Kvar_2858 | -113 | 4.4 | TTTTATGAATCAGCTCACAGAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aldA | ||||
| Ortholog function: aldehyde dehydrogenase A | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1415 | -112 | 4.3 | TTTTATGAAGCCCTTCACAGAA |
| Citrobacter koseri ATCC BAA-895 | CKO_01448 | -137 | 4.7 | TTTTATGAAGCACATCACAAAA |
| -91 | 3.9 | ACATGTGATTGTTATTACTTAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01501 | -137 | 4.4 | TTTTATGAATCAGCTCACAGAA |
| Enterobacter sp. 638 | Ent638_1953 | -113 | 4.7 | TTTTATGAGATATCTCACAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0118 | -36 | 3.6 | AAGTATGACGGGTATATCACTT |
|
Position: -274
Score: 4 Sequence: TATCTTGATGATCTTCAAAAAG
Locus tag: Kvar_2866
|
||||
| Kvar_2866 | -274 | 4 | TATCTTGATGATCTTCAAAAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: astC | ||||
| Ortholog function: bifunctional succinylornithine transaminase/acetylornithine transaminase | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01493 | -274 | 4 | TATCTTGATGATCTTCAAAAAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3110 | -66 | 3.8 | AAAGATGATGCGGAGCATATTA |
|
Position: -131
Score: 4.1 Sequence: TTTTGCGGTTAGCATCACAAAA
Locus tag: Kvar_2898
|
||||
| Kvar_2898 | -131 | 4.1 | TTTTGCGGTTAGCATCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: paaA | ||||
| Ortholog function: predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1388 | -97 | 4.3 | ATTTGTGATTTTACTTAACTAT |
| -76 | 3.6 | TTGTGTAACTTTCATAAAACAA | ||
| -45 | 3.6 | TGTTTTTAATTAATTCACGAAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01469 | -197 | 3.8 | CATTGTGATCGCGATGGCGTTA |
| -131 | 3.7 | TTTTGCGGAGATTATCACAAAA | ||
| Serratia proteamaculans 568 | Spro_3072 | -134 | 3.8 | ACCTGTGAGTAACATCGCAAAA |
| -63 | 3.8 | TTAGTTAACGTGATTCACATTT | ||
|
Position: -177
Score: 4.6 Sequence: TTTTGTGATGCTAACCGCAAAA
Locus tag: Kvar_2899
|
||||
| Kvar_2899 | -177 | 4.6 | TTTTGTGATGCTAACCGCAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: paaN | ||||
| Ortholog function: Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase (EC 1.2.1.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1387 | -261 | 3.6 | TTTCGTGAATTAATTAAAAACA |
| -175 | 3.7 | AACTGTGACGGATTTCGCACCC | ||
| -109 | 3.8 | AGTTGCTATACAGATCGCATAG | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01468 | -246 | 3.3 | TTATGTGAATCACTTTGTTTAT |
| -177 | 4.4 | TTTTGTGATAATCTCCGCAAAA | ||
| Serratia proteamaculans 568 | Spro_3071 | -277 | 3.8 | AAATGTGAATCACGTTAACTAA |
| -206 | 4 | TTTTGCGATGTTACTCACAGGT | ||
|
Position: -81
Score: 4 Sequence: TAGTGTGATCTAAAACAGATCA
Locus tag: Kvar_3067
|
||||
| Kvar_3067 | -81 | 4 | TAGTGTGATCTAAAACAGATCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: outer membrane protein W | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1256 | -166 | 4.9 | AAAATTGATTTAAATCACATTA |
| -82 | 3.8 | TAATGTGATCTATGTAGGATCA | ||
| Salmonella typhimurium LT2 | STM1732 | -82 | 4.2 | AAATGTGATCTGTATTAGATCA |
| Citrobacter koseri ATCC BAA-895 | CKO_01333 | -82 | 3.9 | TAATGTGATCTGTATTGGATCA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01248 | -101 | 3.9 | CATTGCGATCGGTAGCAAAAAT |
| -45 | 4 | TAGTGTGATCTAAAACAGATCA | ||
| Enterobacter sp. 638 | Ent638_2283 | -121 | 3.7 | AAAATTAATCTGGATCAACAAA |
| Yersinia pestis KIM | y2044 | -69 | 3.9 | AGATGTGATCTCGATTAGATCA |
| Serratia proteamaculans 568 | Spro_2674 | -135 | 3.8 | TTTTTTGATTCAGATCAATCCT |
| Edwardsiella tarda EIB202 | ETAE_1528 | -161 | 3.9 | CTGATTGATGTCTATCAAATTT |
| Proteus mirabilis HI4320 | PMI1350 | -168 | 4.6 | AAATTTGATGTGGATCAATTAT |
| -85 | 3.8 | AGTTGTGATCGGCATTAGATCA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2478 | -164 | 4.3 | AACTTTGATTTGGATCAAGTTA |
| -39 | 3.8 | TATTTTGATTGACTTTAAATCA | ||
|
Position: -275
Score: 3.7 Sequence: AATTTCGCAGAGGATCACAATT
Locus tag: Kvar_3093
|
||||
| Kvar_3093 | -275 | 3.7 | AATTTCGCAGAGGATCACAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: astC | ||||
| Ortholog function: bifunctional succinylornithine transaminase/acetylornithine transaminase | ||||
| Enterobacter sp. 638 | Ent638_1696 | -274 | 3.7 | AATTTCGCGAGCGATCACAAAT |
|
Position: -135
Score: 5.1 Sequence: AAACGTGATTTAAGTCACAATT
Locus tag: Kvar_3116
|
||||
| Kvar_3116 | -135 | 5.1 | AAACGTGATTTAAGTCACAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: msrB | ||||
| Ortholog function: methionine sulfoxide reductase B | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1778 | -137 | 5.2 | AAATGTGATTTTCATCACGATT |
| Salmonella typhimurium LT2 | STM1291 | -107 | 4.7 | TAATGTGACATCAGTCACGATT |
| Citrobacter koseri ATCC BAA-895 | CKO_01799 | -107 | 4.9 | AAACGTGATTCCGATCACGATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01198 | -135 | 5.1 | AAACGTGATTTAAGTCACAATT |
| Enterobacter sp. 638 | Ent638_1676 | -137 | 5.2 | ATATGTGAGAAAGATCACAATT |
| Erwinia amylovora ATCC 49946 | EAM_1930 | -137 | 5.2 | AATGGTGATCTGCATCACAATT |
| Yersinia pestis KIM | y2164 | -85 | 5.1 | ATTTGCGATTTTTATCACATTT |
| Serratia proteamaculans 568 | Spro_2727 | -143 | 5.7 | ATATGTGATCGGTATCACATAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2343 | -135 | 5.6 | TTATGTGATACACATCACAATT |
| Edwardsiella tarda EIB202 | ETAE_1484 | -91 | 4.9 | GTTTGTGATGCTCATCACAAAA |
| Proteus mirabilis HI4320 | PMI1503 | -137 | 5.3 | TTATGTGAAATGTATCACATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2557 | -267 | 4.6 | ATATGCGAGTCACATCACAATA |
|
Position: -224
Score: 5.2 Sequence: AATTGTGACTTAAATCACGTTT
Locus tag: Kvar_3117
|
||||
| Kvar_3117 | -224 | 5.2 | AATTGTGACTTAAATCACGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gapA | ||||
| Ortholog function: glyceraldehyde-3-phosphate dehydrogenase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1779 | -226 | 5.3 | AATCGTGATGAAAATCACATTT |
| Salmonella typhimurium LT2 | STM1290 | -226 | 4.8 | AATCGTGACTGATGTCACATTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01800 | -226 | 5 | AATCGTGATCGGAATCACGTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01197 | -225 | 5.2 | AATTGTGACTTAAATCACGTTT |
| Enterobacter sp. 638 | Ent638_1675 | -225 | 5.7 | AATTGTGATCTTTCTCACATAT |
| Erwinia amylovora ATCC 49946 | EAM_1931 | -215 | 5.4 | AATTGTGATGCAGATCACCATT |
| Yersinia pestis KIM | y2165 | -218 | 5.1 | AAATGTGATAAAAATCGCAAAT |
| Serratia proteamaculans 568 | Spro_2728 | -227 | 5.6 | ATATGTGATACCGATCACATAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2344 | -235 | 5.8 | AATTGTGATGTGTATCACATAA |
| Edwardsiella tarda EIB202 | ETAE_1483 | -227 | 5.1 | TTTTGTGATGAGCATCACAAAC |
| Proteus mirabilis HI4320 | PMI1504 | -226 | 5.6 | AAATGTGATACATTTCACATAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2558 | -224 | 5.4 | TATTGTGATGTGACTCGCATAT |
|
Position: -95
Score: 5.2 Sequence: ACGTGTGATGTAGATCACATTA
Locus tag: Kvar_3270
|
||||
| Kvar_3270 | -95 | 5.2 | ACGTGTGATGTAGATCACATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ycfR | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1112 | -114 | 3.7 | ATTAATGATTGTTATAAAAAAT |
| -87 | 4.8 | GTATGTGATCCAGATCACATCT | ||
| Salmonella typhimurium LT2 | STM1214 | -88 | 4.7 | ACGTGTGATGTAGATCACATCT |
| Citrobacter koseri ATCC BAA-895 | CKO_01942 | -113 | 3.8 | TATAATGATCGTTATAAAAAAA |
| -86 | 4.5 | ACGTGTGACCTGGATCACATCT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01110 | -95 | 4.9 | ACGTGTGACATAGATCACATTA |
| Enterobacter sp. 638 | Ent638_1627 | -91 | 4.7 | ACGTGTGATGCAGATCACATCT |
| Serratia proteamaculans 568 | Spro_4435 | -116 | 3.7 | TTATTTGATAAAGATTATCAAA |
|
Position: -176
Score: 5 Sequence: TAATGTGATCTACATCACACGT
Locus tag: Kvar_3271
|
||||
| Kvar_3271 | -176 | 5 | TAATGTGATCTACATCACACGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ycfQ | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1111 | -175 | 5.3 | AGATGTGATCTGGATCACATAC |
| Salmonella typhimurium LT2 | STM1213 | -175 | 4.7 | AGATGTGATCTACATCACACGT |
| Citrobacter koseri ATCC BAA-895 | CKO_01943 | -227 | 4.4 | AGATGTGATCCAGGTCACACGT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01109 | -227 | 4.8 | TAATGTGATCTATGTCACACGT |
| Enterobacter sp. 638 | Ent638_1626 | -174 | 4.6 | AGATGTGATCTGCATCACACGT |
|
Position: -152
Score: 4.1 Sequence: AAACTTGATGCATATCAATTTT
Locus tag: Kvar_3274
|
||||
| Kvar_3274 | -152 | 4.1 | AAACTTGATGCATATCAATTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ndh | ||||
| Ortholog function: NADH dehydrogenase (EC 1.6.99.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1109 | -154 | 3.9 | AAACTTGATTAACATCAATTTT |
| Salmonella typhimurium LT2 | STM1211 | -154 | 4.1 | AAACTTGATGCACATCAATTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01106 | -152 | 4.1 | AAACTTGATGCACATCAATTTT |
| Enterobacter sp. 638 | Ent638_1624 | -153 | 4 | AAACTTGATTCATATCAATTTT |
| Erwinia amylovora ATCC 49946 | EAM_1473 | -55 | 3.7 | TAAGGTTATTTTATTAACCTTT |
| Yersinia pestis KIM | y1777 | -152 | 3.8 | AAAGTTGATATATATCAATTTT |
| Serratia proteamaculans 568 | Spro_1926 | -153 | 4.3 | AAGTTTGATGTACATCAATTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1815 | -153 | 4 | TAAATTGATATATATCAATTTT |
| Edwardsiella tarda EIB202 | ETAE_2070 | -166 | 4.3 | TTATTTGATTTGAATCAATTTT |
| Proteus mirabilis HI4320 | PMI0875 | -157 | 4.6 | TTTTTTGATATAAATCAACTTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2821 | -154 | 3.8 | GAATTTGATGTTGTTCAATTTT |
|
Position: -155
Score: 4.4 Sequence: AAACGTGATAGCCGTCAAACAA
Locus tag: Kvar_3281
|
||||
| Kvar_3281 | -155 | 4.4 | AAACGTGATAGCCGTCAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ptsG | ||||
| Ortholog function: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1101 | -154 | 4.4 | AAACGTGATAGCCGTCAAACAA |
| Salmonella typhimurium LT2 | STM1203 | -155 | 4.4 | AAACGTGATAGCCGTCAAACAA |
| Citrobacter koseri ATCC BAA-895 | CKO_01957 | -229 | 4.4 | AAACGTGATAGCCGTCAAACAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01099 | -155 | 4.4 | AAACGTGATAGCCGTCAAACAA |
| Enterobacter sp. 638 | Ent638_1616 | -155 | 4.4 | AAACGTGATAGCCGTCAAACAA |
| Erwinia amylovora ATCC 49946 | EAM_1466 | -162 | 4.6 | AAACGTGATAGCCATCAAACAA |
| Yersinia pestis KIM | y1767 | -166 | 4.4 | AAACGTGACGGCAATCAAACAT |
| Serratia proteamaculans 568 | Spro_1914 | -164 | 4.4 | AAACGTGACTGTCATCAAACAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1805 | -162 | 4.6 | AAACGTGATAGCAATCAAACAT |
| Proteus mirabilis HI4320 | PMI2292 | -156 | 4.5 | AAACGTGACAGCTATCATATAT |
|
Position: -52
Score: 4 Sequence: TACTGTGTTTTAGATCTCATTC
Locus tag: Kvar_3322
|
||||
| Kvar_3322 | -52 | 4 | TACTGTGTTTTAGATCTCATTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ycdZ | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1036 | -52 | 4 | AAATGTGTGCTCGATCTCATTC |
| -50 | 3.7 | ATGTGTGCTCGATCTCATTCAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02033 | -40 | 3.9 | AAATGTGTGCGTGATCTCATTC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01059 | -52 | 4.1 | TACTGTGTTTTAGATCGCATTC |
| Serratia proteamaculans 568 | Spro_3290 | -125 | 4.2 | TTTTGTGACAAATTCCACATCT |
| -96 | 3.6 | TATCTTGTTTCTCATTACATAT | ||
| -73 | 4.6 | TTATGTGAAATACATCACATGA | ||
| Edwardsiella tarda EIB202 | ETAE_2360 | -124 | 4.3 | AAGTGTGATTGATGTCACTTTG |
| -72 | 3.6 | CGGTGTGATGTCCATCAATGAA | ||
| Proteus mirabilis HI4320 | PMI3124 | -240 | 3.7 | ATTAATAATATATATCAAACAA |
|
Position: -202
Score: 4.2 Sequence: TTTTATGCCCGCCATCACAATT
Position: -144
Score: 4.4 Sequence: AGATTTGAGGTGGATCGCAATT
Locus tag: Kvar_3370
|
||||
| Kvar_3370 | -202 | 4.2 | TTTTATGCCCGCCATCACAATT | |
| -144 | 4.4 | AGATTTGAGGTGGATCGCAATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: frwC | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3949 | -202 | 4 | ATTTGCGACGCGTCTCACAAGA |
| -147 | 4.3 | AGTTATGAGGCGGATCGCATTT | ||
| -57 | 3.9 | TATTGTTTCCTCCATCAAAAAT | ||
| Salmonella typhimurium LT2 | STM4112 | -221 | 4.1 | AAATGTAATGTAGCGCAAAAAG |
| -202 | 4 | AAGTGCGAGTTGTCTCACAACT | ||
| -147 | 4.3 | AGTTATGAAGCGGATCGCATTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03045 | -202 | 3.9 | AATTGCGAGACACTTCACAAGT |
| -147 | 4.3 | AGTTATGAGGCGGATCGCATTT | ||
| Yersinia pestis KIM | y3777 | -258 | 4.5 | AATTGGGATATTGCTCACAAAG |
|
Position: -185
Score: 3.9 Sequence: ATGCCTGACAGAGTTCACACTT
Locus tag: Kvar_3399
|
||||
| Kvar_3399 | -185 | 3.9 | ATGCCTGACAGAGTTCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompA | ||||
| Ortholog function: outer membrane protein A | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0957 | -188 | 4 | ATGCCTGACGGAGTTCACACTT |
| Salmonella typhimurium LT2 | STM1070 | -188 | 4.3 | ATGTCTGACGGAGTTCACACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02111 | -164 | 4 | ATGCCTGACGGAGTTCACACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00986 | -185 | 3.9 | ATGCCTGACAGAGTTCACACTT |
| Enterobacter sp. 638 | Ent638_1469 | -189 | 4 | ATGCCTGACGGAGTTCACACTT |
| Serratia proteamaculans 568 | Spro_1754 | -195 | 3.8 | TTTTTAGAGCTTTATCACATCA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1751 | -200 | 3.9 | TCTTATGACACAAATCACATCA |
| Edwardsiella tarda EIB202 | ETAE_1267 | -196 | 3.7 | TTTGGTGAGCATAATCACATCG |
|
Position: -236
Score: 4.7 Sequence: AATTTTGATTAAGTTCACAAAG
Locus tag: Kvar_3420
|
||||
| Kvar_3420 | -236 | 4.7 | AATTTTGATTAAGTTCACAAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompF | ||||
| Ortholog function: Outer membrane protein F precursor | ||||
| Salmonella typhimurium LT2 | STM0999 | -245 | 4.5 | AAGTTTGACGTTGTTCACAAAG |
| Enterobacter sp. 638 | Ent638_1448 | -245 | 4.6 | AAATTTGAGGTGGTTCACAAAG |
|
Position: -145
Score: 3.7 Sequence: TTGTGTGACGGTGGCCGCGTTT
Locus tag: Kvar_3441
|
||||
| Kvar_3441 | -145 | 3.7 | TTGTGTGACGGTGGCCGCGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: serC | ||||
| Ortholog function: Phosphoserine aminotransferase (EC 2.6.1.52) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0907 | -155 | 4.8 | TTGTGTGATGCAAGCCACATTT |
| Salmonella typhimurium LT2 | STM0977 | -142 | 4.2 | TTGTGTGACGCATGCCGCATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02165 | -171 | 4.6 | TTGTGTGACGTAGCGCGCATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00935 | -145 | 3.7 | TTGTGTGACGGCGGCCGCGTTT |
| Enterobacter sp. 638 | Ent638_1427 | -119 | 4.4 | TTGTGTGACGGTGGACACATTT |
| Yersinia pestis KIM | y2784 | -39 | 3.3 | TATAACGATGGCAATCTCAGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2594 | -78 | 3.5 | AAGTATGACGGGTATAAAAATG |
| Proteus mirabilis HI4320 | PMI0711 | -119 | 3.5 | TATTTTTGTGTGCTACACATAA |
|
Position: -79
Score: 3.8 Sequence: AGATATGATCTATATCAATTTC
Locus tag: Kvar_3444
|
||||
| Kvar_3444 | -79 | 3.8 | AGATATGATCTATATCAATTTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: focA | ||||
| Ortholog function: formate transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0904 | -156 | 3.6 | TATTTTTATTTGGATAATCAAA |
| -78 | 3.8 | AGATATGATCTATATCAATTTC | ||
| Salmonella typhimurium LT2 | STM0974 | -78 | 4.4 | AGATATGATCTATATCAAATTC |
| Citrobacter koseri ATCC BAA-895 | CKO_02167 | -198 | 3.6 | TATTTTTATTTGGATAATCAAA |
| -120 | 4.4 | AGATATGATCTATATCAAATTC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00932 | -121 | 3.8 | AGATATGATCTATATCAATTTC |
| Enterobacter sp. 638 | Ent638_1424 | -78 | 3.8 | AGATATGATCTATATCAATTTC |
| Yersinia pestis KIM | y2789 | -84 | 4 | CAATATGATCCATATCAATTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2596 | -79 | 4.5 | CAATATGATCCACATCAAATTT |
| Proteus mirabilis HI4320 | PMI0706 | -188 | 4 | TTTTTTGATAAAATTTAAAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1614 | -88 | 4.7 | AATTATGATCTATATCAAATTC |
|
Position: -167
Score: 4 Sequence: AAATTTGAAGCAGTTAACGCTA
Position: -77
Score: 4.3 Sequence: ATTTGTGATGAGCATAACCTCT
Locus tag: Kvar_3462
|
||||
| Kvar_3462 | -167 | 4 | AAATTTGAAGCAGTTAACGCTA | |
| -77 | 4.3 | ATTTGTGATGAGCATAACCTCT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: clpS | ||||
| Ortholog function: ATP-dependent Clp protease adaptor protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0881 | -164 | 4 | AAATTTGAAGCAGTTAACGCTA |
| Salmonella typhimurium LT2 | STM0944 | -164 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -104 | 3.6 | AGATGTTAGTTATCTATCAATT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02199 | -164 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -135 | 4.2 | TAATGTGACAGATGTCGCGGAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00914 | -167 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -77 | 4.3 | ATTTGTGATGAGCATAACCTCT | ||
| Enterobacter sp. 638 | Ent638_1398 | -161 | 3.9 | ATTTTTGAAGCAGTTAACGCTA |
| -132 | 3.8 | GAATGTGACAGATATCGCGGAT | ||
| Erwinia amylovora ATCC 49946 | EAM_1320 | -161 | 4 | AAATTTGAAGCAGTTAACGCTA |
| -132 | 4.5 | TTTTGTGATAGAGGTCGCTATT | ||
| Serratia proteamaculans 568 | Spro_1673 | -176 | 3.6 | AAGTTTGAAGCAGGTAACGCTA |
| Edwardsiella tarda EIB202 | ETAE_2208 | -164 | 3.8 | AAGTTTGAGGCAGTTAACGCAA |
| -144 | 3.6 | AATTGTGCGGCAGTGCGCTTTT | ||
| Proteus mirabilis HI4320 | PMI0689 | -268 | 3.7 | TGTCTTTATTTACTTAACATTA |
| -148 | 4.1 | AACTTTGATGTAGCTAACGCTT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1593 | -170 | 4.3 | AAGTTTGATATAGATAACGATA |
|
Position: -270
Score: 4.2 Sequence: AGAGGTTATGCTCATCACAAAT
Position: -180
Score: 4 Sequence: TAGCGTTAACTGCTTCAAATTT
Position: 11
Score: 3.8 Sequence: TACTGTTAAGTGGTTCAACAAT
Locus tag: Kvar_3463
|
||||
| Kvar_3463 | -270 | 4.2 | AGAGGTTATGCTCATCACAAAT | |
| -180 | 4 | TAGCGTTAACTGCTTCAAATTT | ||
| 11 | 3.8 | TACTGTTAAGTGGTTCAACAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cspD | ||||
| Ortholog function: cold shock-like protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0880 | -180 | 4 | TAGCGTTAACTGCTTCAAATTT |
| Salmonella typhimurium LT2 | STM0943 | -181 | 4 | TAGCGTTAACTGCTTCAAATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02200 | -210 | 3.9 | ATCCGCGACATCTGTCACATTA |
| -181 | 4 | TAGCGTTAACTGCTTCAAATTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00913 | -270 | 4.2 | AGAGGTTATGCTCATCACAAAT |
| -180 | 4 | TAGCGTTAACTGCTTCAAATTT | ||
| Enterobacter sp. 638 | Ent638_1397 | -209 | 3.8 | ATCCGCGATATCTGTCACATTC |
| -180 | 3.9 | TAGCGTTAACTGCTTCAAAAAT | ||
| Serratia proteamaculans 568 | Spro_1672 | -205 | 4 | TAGCGTTACCTGCTTCAAACTT |
| -49 | 3.9 | TTCAGTTATTCATCTCACCTAA | ||
| Proteus mirabilis HI4320 | PMI0688 | -163 | 3.8 | AAGCGTTAGCTACATCAAAGTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1592 | -194 | 4.6 | TATCGTTATCTATATCAAACTT |
|
Position: -103
Score: 3.8 Sequence: TGAAATGACCGAGATCTCAAAT
Locus tag: Kvar_3524
|
||||
| Kvar_3524 | -103 | 3.8 | TGAAATGACCGAGATCTCAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: CKO_02295 | ||||
| Ortholog function: hypothetical protein | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02295 | -218 | 3.9 | TTTTGTTATCTCATTGAAAATT |
| -104 | 4.1 | TTTTGTGCAAGTTTTCTCATTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02295 | -218 | 3.9 | TTTTGTTATCTCATTGAAAATT |
| -104 | 4.1 | TTTTGTGCAAGTTTTCTCATTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00854 | -103 | 3.9 | TGAAATGAGCGAGATCGCATAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00854 | -103 | 3.9 | TGAAATGAGCGAGATCGCATAT |
| Enterobacter sp. 638 | Ent638_1314 | -122 | 4.1 | TTTTGTGCAAGCTTTCTCATAA |
| Enterobacter sp. 638 | Ent638_1314 | -122 | 4.1 | TTTTGTGCAAGCTTTCTCATAA |
| Yersinia pestis KIM | y3231 | -299 | 5.4 | TAATGTGACTTTGTTCACATTA |
| -122 | 3.8 | TTCTTTGAAAGAATTCTCATAA | ||
| -21 | 4.9 | TAATTTGAGGGAGATCACAAAA | ||
| Yersinia pestis KIM | y3231 | -299 | 5.4 | TAATGTGACTTTGTTCACATTA |
| -122 | 3.8 | TTCTTTGAAAGAATTCTCATAA | ||
| -21 | 4.9 | TAATTTGAGGGAGATCACAAAA | ||
| Serratia proteamaculans 568 | Spro_3600 | -130 | 3.7 | AAACGTGGTTTTTTGCAAAAAT |
| -21 | 4.6 | AAATTTGAAGGAGATCACAGAA | ||
| Serratia proteamaculans 568 | Spro_3600 | -130 | 3.7 | AAACGTGGTTTTTTGCAAAAAT |
| -21 | 4.6 | AAATTTGAAGGAGATCACAGAA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1966 | -21 | 4.8 | AAAAGTGAACGGGATCACAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1966 | -21 | 4.8 | AAAAGTGAACGGGATCACAAAA |
|
Position: -52
Score: 4.7 Sequence: AAATGTGATTTCGTACACATCT
Locus tag: Kvar_3529
|
||||
| Kvar_3529 | -52 | 4.7 | AAATGTGATTTCGTACACATCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybiS | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0819 | -116 | 4.7 | AAATGTGATTTCGTACACATCT |
| Salmonella typhimurium LT2 | STM0837 | -116 | 4.4 | AAACGTGATTTCGTACACATCT |
| Citrobacter koseri ATCC BAA-895 | CKO_02299 | -202 | 3.8 | ATATGTGACAAACCGCTTATTA |
| -116 | 4.7 | AAATGTGATTTCGTACACATCT | ||
| Enterobacter sp. 638 | Ent638_1310 | -119 | 4.7 | AAATGTGATTTCGTACACATCT |
|
Position: -118
Score: 4.7 Sequence: AATTGTTAAGCCCATCACAAAT
Locus tag: Kvar_3556
|
||||
| Kvar_3556 | -118 | 4.7 | AATTGTTAAGCCCATCACAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: KPN_00825 | ||||
| Ortholog function: putative bacterial regulatory protein, LysR | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00825 | -224 | 3.6 | AAATGAAACGGTATTCAAAAAA |
| -118 | 4.7 | AATTGTTAAGCCCATCACAAAT | ||
|
Position: -97
Score: 3.8 Sequence: TAGTGTAGTAGACGTCACAAAA
Locus tag: Kvar_3562
|
||||
| Kvar_3562 | -97 | 3.8 | TAGTGTAGTAGACGTCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybhQ | ||||
| Ortholog function: putative inner membrane protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0791 | -98 | 3.9 | TAGTGTAGTCGGCGTCACAAAA |
| Salmonella typhimurium LT2 | STM0814 | -98 | 3.8 | TAGTGTAGTCGTCGTCACAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_02336 | -153 | 3.8 | TAGTGTAGTCGTCGTCACAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00819 | -97 | 3.8 | TAGTGTAGTAGACGTCACAAAA |
| Enterobacter sp. 638 | Ent638_1282 | -98 | 3.9 | AAGTGTAGTCGGCGTCACAAAA |
|
Position: -56
Score: 4.2 Sequence: TTTTGTGACGTCTACTACACTA
Locus tag: Kvar_3563
|
||||
| Kvar_3563 | -56 | 4.2 | TTTTGTGACGTCTACTACACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybhP | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0790 | -56 | 4.2 | TTTTGTGACGCCGACTACACTA |
| Salmonella typhimurium LT2 | STM0813 | -56 | 4 | TTTTGTGACGACGACTACACTA |
| Citrobacter koseri ATCC BAA-895 | CKO_02337 | -56 | 4 | TTTTGTGACGACGACTACACTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00818 | -56 | 4.2 | TTTTGTGACGTCTACTACACTA |
| Enterobacter sp. 638 | Ent638_1281 | -57 | 4.2 | TTTTGTGACGCCGACTACACTT |
|
Position: -124
Score: 4 Sequence: AAACGTGATTGCTGACGCAATA
Locus tag: Kvar_3587
|
||||
| Kvar_3587 | -124 | 4 | AAACGTGATTGCTGACGCAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hutU | ||||
| Ortholog function: urocanate hydratase | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02357 | -123 | 3.8 | AAGCGTGATTGCTGACGCAATA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00795 | -124 | 4 | AAACGTGATTGCTGACGCAATA |
| Enterobacter sp. 638 | Ent638_1263 | -120 | 4 | AAGCGTGATAGCTAACGCAATA |
| Erwinia amylovora ATCC 49946 | EAM_1253 | -121 | 3.8 | TTTTGTGACAAAGCTGGCACAA |
| Yersinia pestis KIM | y4038 | -261 | 4.9 | ATATGTGATTTGGTGCGCAAAT |
| Serratia proteamaculans 568 | Spro_0805 | -196 | 4.8 | TATTGTGATTTGACGCGCAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3193 | -203 | 4.7 | ATTTGTGATTATAAACACAAAA |
|
Position: -78
Score: 3.9 Sequence: TAACTTGCCCTGTGTCACACTT
Locus tag: Kvar_3614
|
||||
| Kvar_3614 | -78 | 3.9 | TAACTTGCCCTGTGTCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: galE2 | ||||
| Ortholog function: UDP-galactose-4-epimerase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0759 | -78 | 3.8 | TAATTTATTCCATGTCACACTT |
| Salmonella typhimurium LT2 | STM0776 | -78 | 3.7 | TAATTTATTACATGTCACACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02376 | -36 | 3.7 | TAATATATTCCATGTCACACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00773 | -78 | 3.7 | TAACTTGTGCTATGTCACACTT |
| -44 | 4.1 | ATATGCTATCTTCCTCACAAAC | ||
| Yersinia pestis KIM | y3043 | -163 | 3.7 | TTATTTGTCTATGCTCACAGAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1389 | -72 | 3.7 | ATTCTCGCTGTAGATCACCTTT |
| Edwardsiella tarda EIB202 | ETAE_2564 | -195 | 3.7 | TAGTGTAAGCGATACCACAAAC |
|
Position: -123
Score: 3.8 Sequence: TATCGTGATGCGATATACGAAA
Locus tag: Kvar_3631
|
||||
| Kvar_3631 | -123 | 3.8 | TATCGTGATGCGATATACGAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybgE | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0735 | -300 | 3.6 | TAAATTGTTCTCGATCAAATTG |
| -255 | 3.6 | TAAATTGATCACCGTCGAAAAA | ||
| Salmonella typhimurium LT2 | STM0743 | -256 | 3.7 | TAAATTGATCGCTGTCGAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00739 | -252 | 3.6 | TATATTGATCACCGTCGAAAAA |
| Serratia proteamaculans 568 | Spro_1274 | -300 | 3.7 | AAGTCTAACCCACATCACGTAA |
| Edwardsiella tarda EIB202 | ETAE_2578 | -222 | 3.6 | TATTGTTATATTTGTTATCTTT |
| Proteus mirabilis HI4320 | PMI0576 | -247 | 3.8 | AAATATGCTGTTACTAACCTAA |
|
Position: -256
Score: 3.6 Sequence: TATATTGATCACCGTCGAAAAA
Locus tag: Kvar_3634
|
||||
| Kvar_3634 | -256 | 3.6 | TATATTGATCACCGTCGAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cydA | ||||
| Ortholog function: cytochrome d terminal oxidase, polypeptide subunit I | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00736 | -252 | 3.6 | TATATTGATCACCGTCGAAAAA |
|
Position: -242
Score: 4.5 Sequence: TATCGTGACCTTGATCACTGTT
Locus tag: Kvar_3643
|
||||
| Kvar_3643 | -242 | 4.5 | TATCGTGACCTTGATCACTGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdhC | ||||
| Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit | ||||
| Enterobacter sp. 638 | Ent638_1222 | -295 | 4.2 | TATCGTGACTGTGATCACTGTT |
| Erwinia amylovora ATCC 49946 | EAM_1168 | -249 | 4.4 | AAGTGTGATTTTTGTCACTGTT |
| -190 | 3.6 | TAATGAGATTGTGATCCACTTA | ||
| Yersinia pestis KIM | y3071 | -254 | 4.5 | AATCGTGATCCTAATCACTGTT |
| Serratia proteamaculans 568 | Spro_1263 | -253 | 4.3 | ATCCGTGATCTAAATCACTGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1357 | -265 | 4.7 | ATTCGTGATCTAAATCACTGTT |
| Edwardsiella tarda EIB202 | ETAE_2588 | -261 | 3.7 | ATGCGTGACCGTTGTCACTGTT |
| Proteus mirabilis HI4320 | PMI0565 | -264 | 4.3 | AAAAGTGATCCCTCTCACTGTT |
|
Position: -154
Score: 4.7 Sequence: TTTGGTGATAATTATCACAAAA
Locus tag: Kvar_3673
|
||||
| Kvar_3673 | -154 | 4.7 | TTTGGTGATAATTATCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nagE | ||||
| Ortholog function: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0679 | -176 | 4.4 | TTTGGTGACAAAACTCACAAAA |
| -142 | 4.2 | ATTTGCGATACGAATTAAATTT | ||
| Salmonella typhimurium LT2 | STM0685 | -177 | 4.8 | TTTAGTGATTATAATCACAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_02485 | -181 | 4.9 | TTTGGTGATTCAAATCACAAAA |
| -147 | 3.6 | ATTTGCGATACGAATTAATTTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00700 | -153 | 4.7 | TTTGGTGATAATTATCACAAAA |
| -119 | 3.6 | ATTTGCGATACGAATTAATTTT | ||
| Erwinia amylovora ATCC 49946 | EAM_1148 | -161 | 4.8 | TAAGGTGACTTTAATCACATAT |
| Serratia proteamaculans 568 | Spro_1228 | -162 | 5.1 | TTTGGTGATGTAAATCACAAAA |
| -44 | 3.9 | AAATATGATAAAGCTCATTAAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1318 | -200 | 3.7 | AAATTTGAACCCGTTTACTATT |
| -132 | 3.9 | TATCGCTACAGTGATCACAATT | ||
|
Position: -183
Score: 5 Sequence: TTTTGTGATAATTATCACCAAA
Locus tag: Kvar_3674
|
||||
| Kvar_3674 | -183 | 5 | TTTTGTGATAATTATCACCAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nagB | ||||
| Ortholog function: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0678 | -212 | 4.3 | AAATTTAATTCGTATCGCAAAT |
| -178 | 4.6 | TTTTGTGAGTTTTGTCACCAAA | ||
| Salmonella typhimurium LT2 | STM0684 | -205 | 3.7 | AAAATTAATTCGCCTCGCAAAT |
| -171 | 4.7 | TTTTGTGATTATAATCACTAAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02486 | -218 | 3.8 | AAAATTAATTCGTATCGCAAAT |
| -184 | 5.2 | TTTTGTGATTTGAATCACCAAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00699 | -217 | 3.8 | AAAATTAATTCGTATCGCAAAT |
| -183 | 5 | TTTTGTGATAATTATCACCAAA | ||
| Enterobacter sp. 638 | Ent638_1193 | -218 | 3.8 | AAAATTAATTCGTATCGCAAAT |
| -184 | 4.6 | TTTTGTGAGTTTTGTCACCAAA | ||
| Erwinia amylovora ATCC 49946 | EAM_1147 | -195 | 4.9 | ATATGTGATTAAAGTCACCTTA |
| Yersinia pestis KIM | y1202 | -214 | 5.1 | TTTTGTGATAAATATCACCAAA |
| Serratia proteamaculans 568 | Spro_1227 | -194 | 5.3 | TTTTGTGATTTACATCACCAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1326 | -180 | 5 | TTATGTGATAAAAATCACCAAA |
| Edwardsiella tarda EIB202 | ETAE_2617 | -190 | 5 | ATTTGTGATAACTATCACCAAT |
| Proteus mirabilis HI4320 | PMI0454 | -217 | 4.9 | ATTTGTGATTAAAGTCACCTAT |
|
Position: -97
Score: 4.4 Sequence: AAGTGTGATTTCCATCCCCATA
Locus tag: Kvar_3703
|
||||
| Kvar_3703 | -97 | 4.4 | AAGTGTGATTTCCATCCCCATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybeD | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0631 | -94 | 3.6 | AAGTGTAATTTCCGTCCCCATA |
| Salmonella typhimurium LT2 | STM0636 | -93 | 4.2 | AAGTGTGATTTTCGTCCCCATA |
| -35 | 3.9 | AGTTGTTATTTTTTTTACGTAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02527 | -91 | 4.4 | AAGTGTGATTTCCATCCCCATA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00663 | -97 | 4.4 | AAGTGTGATTTCCATCCCCATA |
| Enterobacter sp. 638 | Ent638_1166 | -90 | 4.4 | AAGTGTGATTTCCATCCCCATA |
| Yersinia pestis KIM | y1174 | -146 | 4.2 | TATTGTGATTAATCTTATATTG |
|
Position: -239
Score: 3.6 Sequence: TATCGTGACTTTTTTAATTAAT
Locus tag: Kvar_3766
|
||||
| Kvar_3766 | -239 | 3.6 | TATCGTGACTTTTTTAATTAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fepA | ||||
| Ortholog function: iron-enterobactin outer membrane transporter | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0584 | -36 | 3.2 | AGTTGCAATTCGTGGCAAAAAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00602 | -239 | 3.4 | TAGCGTGACTTTTTTAATTAAT |
| Enterobacter sp. 638 | Ent638_1116 | -228 | 3.6 | TATTTTGTTTCAGGACAAATTT |
|
Position: -125
Score: 3.8 Sequence: AATTATTATCCGACTAACATAC
Locus tag: Kvar_3920
|
||||
| Kvar_3920 | -125 | 3.8 | AATTATTATCCGACTAACATAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ushA | ||||
| Ortholog function: UDP-sugar hydrolase (EC 3.6.1.45); 5'-nucleotidase (EC 3.1.3.5) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0480 | -174 | 4 | ATTTGTGATTATTACCAGACTA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00461 | -125 | 3.9 | AATTATTATCCAACTAACATAC |
| -94 | 3.7 | AGGTTTGAAGGAAGTCGCAATT | ||
| Enterobacter sp. 638 | Ent638_0959 | -95 | 3.9 | AGATTTGAGGAAAGTCGCAATT |
| Serratia proteamaculans 568 | Spro_1147 | -103 | 4.6 | TAATTTGACGCACATCGCAAAA |
| Edwardsiella tarda EIB202 | ETAE_1034 | -139 | 4.4 | TTAGGTGAGTCACGTCACAATA |
| Proteus mirabilis HI4320 | PMI2177 | -111 | 3.7 | ATATATAACCTACGTCATAAAA |
|
Position: -100
Score: 4.6 Sequence: CTTTGTGATAGTCATCACATCA
Locus tag: Kvar_3941
|
||||
| Kvar_3941 | -100 | 4.6 | CTTTGTGATAGTCATCACATCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: maa | ||||
| Ortholog function: maltose O-acetyltransferase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0459 | -97 | 4.8 | CTATGTGATCTTTATCACACAG |
| Salmonella typhimurium LT2 | STM0472 | -97 | 4.7 | AACAGTGATATAGATCACATAG |
| Citrobacter koseri ATCC BAA-895 | CKO_02692 | -101 | 4.6 | TCTCGTGATTTAGATCACATCA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00440 | -100 | 4.7 | CTTTGTGATAGACATCACATCA |
| Enterobacter sp. 638 | Ent638_0939 | -98 | 4.3 | TGCTGTGACTCTGATCACATCA |
|
Position: -99
Score: 3.8 Sequence: ATCTGAGATCTGTGCCACACTT
Locus tag: Kvar_3965
|
||||
| Kvar_3965 | -99 | 3.8 | ATCTGAGATCTGTGCCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybaY | ||||
| Ortholog function: Glycoprotein-polysaccharide metabolism | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0453 | -101 | 4.3 | ATGCGTGATGTGTGCCACACTT |
| Salmonella typhimurium LT2 | STM0465 | -100 | 3.9 | ATGAGTGACATGTGCCACACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02705 | -102 | 4 | ATAAGTGAGATATGCCACACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00416 | -99 | 3.8 | ATCTGAGATCTGTGCCACACTT |
| Enterobacter sp. 638 | Ent638_0921 | -96 | 4.3 | ATAAGTGATATGTGCCACACTT |
|
Position: -144
Score: 3.8 Sequence: AAGTGTGGCACAGATCTCAGAT
Locus tag: Kvar_3966
|
||||
| Kvar_3966 | -144 | 3.8 | AAGTGTGGCACAGATCTCAGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tesB | ||||
| Ortholog function: Acyl-CoA thioesterase II (EC 3.1.2.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0452 | -138 | 3.9 | AAGTGTGGCACACATCACGCAT |
| Citrobacter koseri ATCC BAA-895 | CKO_02706 | -135 | 3.9 | AAGTGTGGCATATCTCACTTAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00415 | -139 | 3.8 | AAGTGTGGCACAGATCTCAGAT |
| Enterobacter sp. 638 | Ent638_0920 | -131 | 4 | AAGTGTGGCACATATCACTTAT |
| Yersinia pestis KIM | y1043 | -153 | 3.6 | TAGCGTGCTAATTATAGCATAA |
| Serratia proteamaculans 568 | Spro_1111 | -54 | 3.6 | TGCCGTGATATTCCGCACACTG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1162 | -154 | 3.7 | TAGTATGATTCAATAAACACAA |
|
Position: -131
Score: 3.8 Sequence: TTATGTGAAACAACACGTATTT
Locus tag: Kvar_4018
|
||||
| Kvar_4018 | -131 | 3.8 | TTATGTGAAACAACACGTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tsx | ||||
| Ortholog function: Nucleoside-specific channel-forming protein Tsx precursor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0411 | -250 | 3.7 | TTTTGTTACTCTGCTTACATCA |
| -129 | 3.9 | AACTGTGAAACGAAACATATTT | ||
| Salmonella typhimurium LT2 | STM0413 | -129 | 4 | ATATGTGAAACAAGACATATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_02750 | -131 | 3.7 | ATCTGTGAAACAAGACATATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00363 | -131 | 3.8 | TTATGTGAAACAACACGTATTT |
| Enterobacter sp. 638 | Ent638_0879 | -124 | 4.1 | ATATGTGAAACAACACATATTT |
| Erwinia amylovora ATCC 49946 | EAM_2589 | -218 | 5.3 | ATTTGTGATAAAAATCACACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3796 | -172 | 5.5 | TTATGTGATTAAAATCACATAA |
| Edwardsiella tarda EIB202 | ETAE_2935 | -245 | 4.6 | TAATTTGATGAGAATCTCAATT |
|
Position: -208
Score: 3.7 Sequence: AAATGCGAGCTATTGCGCAAAG
Locus tag: Kvar_4149
|
||||
| Kvar_4149 | -208 | 3.7 | AAATGCGAGCTATTGCGCAAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yafK | ||||
| Ortholog function: hypothetical protein | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00238 | -208 | 3.7 | AAATGCGAGCTATTGCGCAAAG |
| Yersinia pestis KIM | y0949 | -217 | 3.7 | TTATTTTATACAAAACATATAT |
| Serratia proteamaculans 568 | Spro_0952 | -136 | 4.2 | TTTTTTTATACACAACACATAT |
| Proteus mirabilis HI4320 | PMI0351 | -297 | 3.7 | AATTGTTACTATTTTCTCTTAT |
| -228 | 3.7 | TCGAGTGATTTAGCTCAAGCAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1195 | -232 | 3.9 | TCAAGTGATTTAGTTCAAGCAA |
|
Position: -146
Score: 5.4 Sequence: AAGTGTGATCGGAATCACAAAT
Locus tag: Kvar_4249
|
||||
| Kvar_4249 | -146 | 5.4 | AAGTGTGATCGGAATCACAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hpt | ||||
| Ortholog function: hypoxanthine phosphoribosyltransferase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0125 | -147 | 5.3 | ATGTGTGATCGTCATCACAATT |
| Salmonella typhimurium LT2 | STM0170 | -147 | 5.3 | ATGTGTGATCGTCATCACAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03242 | -135 | 5.3 | AAGTGTGATCGTCATCACAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00133 | -134 | 5.4 | AAGTGTGATCGGAATCACAAAT |
| Enterobacter sp. 638 | Ent638_0673 | -180 | 3.6 | AATTTTGATAGCAATTAATTAT |
| -148 | 5.4 | AAGTGTGATCGGAATCACAAAT | ||
| Proteus mirabilis HI4320 | PMI0160 | -154 | 3.6 | TACTGTAATAAGTAACAAAATT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0860 | -144 | 4 | AATTCTGATATGCTTTGCAAAA |
|
Position: -218
Score: 3.5 Sequence: TTTTGTAAACAGATTAACACCT
Locus tag: Kvar_4258
|
||||
| Kvar_4258 | -218 | 3.5 | TTTTGTAAACAGATTAACACCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acnB | ||||
| Ortholog function: Aconitate hydratase 2 (EC 4.2.1.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0118 | -144 | 3.5 | TTTTGTAAACAGATTAACACCT |
| Salmonella typhimurium LT2 | STM0158 | -157 | 3.9 | TTTTGTAAACAGATTAACACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00124 | -260 | 3.5 | TTTTGTAAACAGATTAACACCT |
| Yersinia pestis KIM | y0771 | -276 | 4.3 | TTATGTGAACGAATTAACACTG |
| Serratia proteamaculans 568 | Spro_4008 | -192 | 3.9 | TTATGTGAACGAATTAACAACC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3778 | -163 | 4.3 | TTATGTGAACGAATTAACAATC |
| Proteus mirabilis HI4320 | PMI2040 | -177 | 4.5 | TTATGTGAACGAATTAACATAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3619 | -261 | 3.6 | TTCTGTGAACGAATTAACATCG |
|
Position: -105
Score: 3.3 Sequence: AATTGTTAACAATTTTGTAAAA
Locus tag: Kvar_4262
|
||||
| Kvar_4262 | -105 | 3.3 | AATTGTTAACAATTTTGTAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lpdA | ||||
| Ortholog function: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0116 | -224 | 3.3 | AATTGTTAACAATTTTGTAAAA |
| Salmonella typhimurium LT2 | STM0154 | -153 | 3.5 | GTTTGTGAGGTTATTAGCGAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03256 | -95 | 3.3 | AATTGTTAACAATTTTGTAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00120 | -105 | 3.3 | AATTGTTAACAATTTTGTAAAA |
| Yersinia pestis KIM | y0769 | -253 | 3.3 | ATTGGTGATCTTGTTATTACTG |
| Serratia proteamaculans 568 | Spro_4009 | -246 | 3.6 | TATGGTGATGTAATGAAAAAAG |
| Proteus mirabilis HI4320 | PMI2044 | -133 | 3.4 | GGTTGTGAGATCTGTCATGTTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3621 | -131 | 3.9 | TGTTGCGAGTTCTGTCACGTTA |
|
Position: -1
Score: 3.4 Sequence: AATGGCTATCGAAATCAAAGTA
Locus tag: Kvar_4263
|
||||
| Kvar_4263 | -1 | 3.4 | AATGGCTATCGAAATCAAAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aceF | ||||
| Ortholog function: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0115 | -156 | 3.7 | AAACGTTATATATGTCAAGTTG |
| -131 | 3.8 | AAATGTGCACAGTTTCATGATT | ||
| Salmonella typhimurium LT2 | STM0153 | -157 | 3.5 | AAACATGATTTCTGTAAAATTG |
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| -79 | 3 | CTTATTAAGCTTTCTCACGAAA | ||
| -54 | 3.4 | TAATGGGACAGGTTCCAGATAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03258 | -180 | 3.2 | ATTTGTGCATAGTTACATCTTT |
| -157 | 3.1 | AAACGTTATTTCTGTAATCTTG | ||
| -148 | 3.3 | TTCTGTAATCTTGTTAAAATGT | ||
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00119 | -155 | 3.2 | AAATGTTATTTCTGTAAGGTTG |
| -118 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Enterobacter sp. 638 | Ent638_0661 | -120 | 3.2 | TTTACTGATTTCAATCAAAACC |
| -77 | 3.1 | TATTGTATTTTCTGGCGAAAAT | ||
| -68 | 3 | TTTAGCGATACGAATATGAAAT | ||
| Erwinia amylovora ATCC 49946 | EAM_0748 | -198 | 3.3 | TAAAGCGATCGGATTTAACAAT |
| Yersinia pestis KIM | y0768 | -151 | 4.2 | AAATGTGCTGGGTTTCATGATT |
| -139 | 3.3 | TTTCATGATTTCGGTCAAGGTC | ||
| -74 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Serratia proteamaculans 568 | Spro_4010 | -132 | 3.1 | AAATGTGCGGGTAACCTGATTT |
| -56 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3788 | -120 | 3.7 | ATTGGTGATTTAGCTCAAGGTC |
| -55 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Edwardsiella tarda EIB202 | ETAE_0660 | -143 | 3.2 | TTTCATGATTTACATCAATAGT |
| Proteus mirabilis HI4320 | PMI2045 | -218 | 3.1 | TGTTTTTAATCTTTTCTAATAA |
| -199 | 4.4 | TAATGCGATCTAGTTATCAAAT | ||
| -181 | 4.2 | AAATTTGATGAATTTATCAAAT | ||
| -158 | 3 | ATTTGTTAAAATTTGCAGGTTT | ||
| -138 | 3.9 | TTTTATGATTTCGCTCAACAAC | ||
| -95 | 3.1 | CTTTGTTACTTTATTATCCATT | ||
| -89 | 3.1 | TACTTTATTATCCATTACATTA | ||
|
Position: -281
Score: 3.2 Sequence: TAATTTGATTTTTTATTCATCT
Position: -155
Score: 3.2 Sequence: AAATGTTATTTCTGTAAGGTTG
Position: -118
Score: 3.2 Sequence: TTTACTGATTTCAATCAAAACC
Locus tag: Kvar_4265
|
||||
| Kvar_4265 | -281 | 3.2 | TAATTTGATTTTTTATTCATCT | |
| -155 | 3.2 | AAATGTTATTTCTGTAAGGTTG | ||
| -118 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pdhR | ||||
| Ortholog function: Transcriptional repressor for pyruvate dehydrogenase complex | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0113 | -156 | 3.7 | AAACGTTATATATGTCAAGTTG |
| -131 | 3.8 | AAATGTGCACAGTTTCATGATT | ||
| Salmonella typhimurium LT2 | STM0151 | -157 | 3.5 | AAACATGATTTCTGTAAAATTG |
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| -79 | 3 | CTTATTAAGCTTTCTCACGAAA | ||
| -54 | 3.4 | TAATGGGACAGGTTCCAGATAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03260 | -180 | 3.2 | ATTTGTGCATAGTTACATCTTT |
| -157 | 3.1 | AAACGTTATTTCTGTAATCTTG | ||
| -148 | 3.3 | TTCTGTAATCTTGTTAAAATGT | ||
| -120 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00117 | -155 | 3.2 | AAATGTTATTTCTGTAAGGTTG |
| -118 | 3.2 | TTTACTGATTTCAATCAAAACC | ||
| Enterobacter sp. 638 | Ent638_0659 | -120 | 3.2 | TTTACTGATTTCAATCAAAACC |
| -77 | 3.1 | TATTGTATTTTCTGGCGAAAAT | ||
| -68 | 3 | TTTAGCGATACGAATATGAAAT | ||
| Erwinia amylovora ATCC 49946 | EAM_0746 | -198 | 3.3 | TAAAGCGATCGGATTTAACAAT |
| Yersinia pestis KIM | y0766 | -151 | 4.2 | AAATGTGCTGGGTTTCATGATT |
| -139 | 3.3 | TTTCATGATTTCGGTCAAGGTC | ||
| -74 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Serratia proteamaculans 568 | Spro_4012 | -132 | 3.1 | AAATGTGCGGGTAACCTGATTT |
| -56 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3790 | -120 | 3.7 | ATTGGTGATTTAGCTCAAGGTC |
| -55 | 3.4 | TTTTGAAATTGGTATTACCAAT | ||
| Edwardsiella tarda EIB202 | ETAE_0658 | -143 | 3.2 | TTTCATGATTTACATCAATAGT |
| Proteus mirabilis HI4320 | PMI2047 | -218 | 3.1 | TGTTTTTAATCTTTTCTAATAA |
| -199 | 4.4 | TAATGCGATCTAGTTATCAAAT | ||
| -181 | 4.2 | AAATTTGATGAATTTATCAAAT | ||
| -158 | 3 | ATTTGTTAAAATTTGCAGGTTT | ||
| -138 | 3.9 | TTTTATGATTTCGCTCAACAAC | ||
| -95 | 3.1 | CTTTGTTACTTTATTATCCATT | ||
| -89 | 3.1 | TACTTTATTATCCATTACATTA | ||
|
Position: -126
Score: 4.7 Sequence: CATTGTTATCTGCTTCACACTT
Locus tag: Kvar_4267
|
||||
| Kvar_4267 | -126 | 4.7 | CATTGTTATCTGCTTCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: araT | ||||
| Ortholog function: putative permease of the Na+:galactoside symporter family | ||||
| Salmonella typhimurium LT2 | STM0149 | -127 | 3.8 | GGGTGTTATCTGCCTCACAGTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00115 | -171 | 4.7 | CATTGTTATCTGCTTCACACTT |
|
Position: -144
Score: 3.2 Sequence: TTTTGCGAGCCGACTCGCAGCC
Locus tag: Kvar_4272
|
||||
| Kvar_4272 | -144 | 3.2 | TTTTGCGAGCCGACTCGCAGCC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ppdD | ||||
| Ortholog function: predicted major pilin subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0108 | -145 | 3.2 | CTTCGTAACGCCTCGCAAATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_03268 | -146 | 3.4 | TTTTTCGAGCGGCCTCGCAAAC |
| Yersinia pestis KIM | y0761 | -123 | 3.8 | TTACGTTATTGCAATAACCTAA |
| Proteus mirabilis HI4320 | PMI2049 | -146 | 4.3 | TAATGCGAACTTGCTCTCAATA |
|
Position: -228
Score: 4.4 Sequence: AAGTGTGACGCCGTGCAAATAT
Locus tag: Kvar_4320
|
||||
| Kvar_4320 | -228 | 4.4 | AAGTGTGACGCCGTGCAAATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: araC | ||||
| Ortholog function: DNA-binding transcriptional dual regulator | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0064 | -229 | 4.4 | AAGTGTGACGCCGTGCAAATAA |
| Salmonella typhimurium LT2 | STM0104 | -231 | 4.5 | AAGTGTGACGCTGTGCAAATAT |
| Citrobacter koseri ATCC BAA-895 | CKO_03318 | -230 | 4.4 | AAGTGTGACGCCGTGCAAATAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00063 | -229 | 4.4 | AAGTGTGACGCCGTGCAAATAT |
| Enterobacter sp. 638 | Ent638_0611 | -228 | 4.4 | AAGTGTGACGCTGTGCAAATAA |
|
Position: -130
Score: 3.9 Sequence: ATATTTGCACGGCGTCACACTT
Position: 5
Score: 3.9 Sequence: AATTGCGATTGGCCTCGACTTT
Locus tag: Kvar_4321
|
||||
| Kvar_4321 | -130 | 3.9 | ATATTTGCACGGCGTCACACTT | |
| 5 | 3.9 | AATTGCGATTGGCCTCGACTTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: araB | ||||
| Ortholog function: L-ribulokinase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0063 | -131 | 3.9 | TTATTTGCACGGCGTCACACTT |
| Salmonella typhimurium LT2 | STM0103 | -131 | 3.8 | ATATTTGCACAGCGTCACACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_03319 | -132 | 3.9 | ATATTTGCACGGCGTCACACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00062 | -130 | 3.9 | ATATTTGCACGGCGTCACACTT |
| Enterobacter sp. 638 | Ent638_0610 | -130 | 3.8 | TTATTTGCACAGCGTCACACTT |
|
Position: -268
Score: 4 Sequence: TAATGTGAAGCTCCCCAGATTA
Locus tag: Kvar_4329
|
||||
| Kvar_4329 | -268 | 4 | TAATGTGAAGCTCCCCAGATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: citA | ||||
| Ortholog function: signal transduction histidine kinase regulating citrate/malate metabolism | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00054 | -269 | 4.3 | TAATGTGAAGCTTCCCAAATTA |
| Enterobacter sp. 638 | Ent638_3378 | -292 | 4.1 | TTATGTGAGGAACGGCATATTA |
| Serratia proteamaculans 568 | Spro_3731 | -272 | 4.6 | TGCTGTGATTTTGTTCAAAATA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2577 | -104 | 3.9 | AAACGTGTTATTGCTCACAAGT |
|
Position: -110
Score: 3.2 Sequence: ATTTGTGACATAACCTGCATCG
Locus tag: Kvar_4384
|
||||
| Kvar_4384 | -110 | 3.2 | ATTTGTGACATAACCTGCATCG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: proP | ||||
| Ortholog function: L-Proline/Glycine betaine transporter ProP | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03376 | -115 | 3.7 | TTCTGTGACATAAATTACGCAG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00010 | -105 | 3.2 | TGATATAACCTGCATCGCTAAT |
|
Position: -94
Score: 4 Sequence: TTTAGTGATTTTTGTTGCAAAT
Locus tag: Kvar_4393
|
||||
| Kvar_4393 | -94 | 4 | TTTAGTGATTTTTGTTGCAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yjtD | ||||
| Ortholog function: RNA methyltransferase, TrmH family, group 1 | ||||
| Salmonella typhimurium LT2 | STM4600 | -97 | 3.6 | TTCAGTGATATCAGTTAAAATT |
| Citrobacter koseri ATCC BAA-895 | CKO_03386 | -222 | 3.7 | AGGTGTGATTCATTCTAAATTA |
| -53 | 4.2 | TATGTTGACATTGGTCACATTA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04857 | -94 | 4 | TTTAGTGATTTTTGTTGCAAAT |
| Enterobacter sp. 638 | Ent638_0563 | -54 | 4.3 | TATGTTGAGGTGGATCACACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3892 | -83 | 3.7 | AATCGTGATCGATTACACGTCC |
|
Position: -21
Score: 3.8 Sequence: TTTTTTAATAATGGTAACAATA
Locus tag: Kvar_4399
|
||||
| Kvar_4399 | -21 | 3.8 | TTTTTTAATAATGGTAACAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: creA | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4397 | -81 | 3.7 | TATTGAGATTTTGTTCTTAATC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04852 | -42 | 3.8 | TTTTTTAATAATGGTAACAATA |
| Serratia proteamaculans 568 | Spro_0680 | -75 | 3.8 | TTCTGTGACCTAAAACATAAAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0561 | -111 | 4 | CTTTGTGAAATTATTCTAATAA |
|
Position: -303
Score: 3.6 Sequence: TATGGCGACGATGTGCACAAAT
Position: -249
Score: 3.6 Sequence: ATATGTTAGAATAATAACATCA
Position: -158
Score: 5 Sequence: AATTGTGACTTGCATCACATCA
Position: -105
Score: 3.7 Sequence: AACTGTGATGAATGTCGAAGTG
Locus tag: Kvar_4414
|
||||
| Kvar_4414 | -303 | 3.6 | TATGGCGACGATGTGCACAAAT | |
| -249 | 3.6 | ATATGTTAGAATAATAACATCA | ||
| -158 | 5 | AATTGTGACTTGCATCACATCA | ||
| -105 | 3.7 | AACTGTGATGAATGTCGAAGTG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: deoC | ||||
| Ortholog function: 2-deoxyribose-5-phosphate aldolase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4381 | -149 | 4.6 | TTATTTGAACCAGATCGCATTA |
| -96 | 4.5 | AATTGTGATGTGTATCGAAGTG | ||
| Salmonella typhimurium LT2 | STM4567 | -133 | 4.9 | TAATTTGATTCAGATCTCATTA |
| -80 | 4.2 | AACTGTGATGTATATCGAAGTG | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03410 | -134 | 4.2 | TTATTTGAAGTGGATCTCGTTA |
| -81 | 4.2 | AACTGTGATGTATATCGAAGTG | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04837 | -158 | 5.2 | ATTTGTGATTTTAATCACGTTA |
| -105 | 3.7 | AACTGTGATGAATGTCGAAGTG | ||
| Enterobacter sp. 638 | Ent638_0541 | -151 | 4.6 | AAATTTGAAGTGGATCTCATTA |
| -98 | 3.7 | AACTGTGATGAATGTCGAAGTG | ||
| Erwinia amylovora ATCC 49946 | EAM_0615 | -233 | 4.6 | TGATGTGATAATTCTAACATTA |
| Yersinia pestis KIM | y3743 | -169 | 3.7 | TGCGGTGAGATGGATCTCAATT |
| Serratia proteamaculans 568 | Spro_0660 | -262 | 4.6 | ATTTGTGAACGATATCGCGTTA |
| -240 | 5.5 | TTTTGTGATGGTCTTCACATAT | ||
| -188 | 3.8 | TAGTGTGACTGTGAACGCGAAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0727 | -282 | 4.4 | AAGTGTGAATGAATGCACAAAA |
| Proteus mirabilis HI4320 | PMI2416 | -267 | 4.4 | ATATGTGAGTTACTTCGCAACT |
| -135 | 5.6 | TTTTGTGATTCTGATCACAATT | ||
| -83 | 4.5 | TATTGTGACAGAAAGCACATCT | ||
|
Position: -183
Score: 5.1 Sequence: TTTTGTGATCTGATTAACACAA
Locus tag: Kvar_4462
|
||||
| Kvar_4462 | -183 | 5.1 | TTTTGTGATCTGATTAACACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hpaR | ||||
| Ortholog function: 4-hydroxyphenylacetate catabolism | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04790 | -183 | 5 | TTTTGTGATCGGATTAACACAA |
|
Position: -126
Score: 4.5 Sequence: TTGTGTTAATCAGATCACAAAA
Locus tag: Kvar_4463
|
||||
| Kvar_4463 | -126 | 4.5 | TTGTGTTAATCAGATCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hpaG | ||||
| Ortholog function: 4-hydroxyphenylacetate catabolism | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04789 | -125 | 4.4 | TTGTGTTAATCCGATCACAAAA |
| Serratia proteamaculans 568 | Spro_0625 | -123 | 5 | TTTTGTTATCACGATCACAAAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0990 | -159 | 3.7 | AATAATGATAAAAAACAAATTT |
| -129 | 4.9 | TATTGTTACTGAGATCACAATT | ||
|
Position: -231
Score: 4.7 Sequence: TGCCGTGATCTCAATCACATAA
Locus tag: Kvar_4480
|
||||
| Kvar_4480 | -231 | 4.7 | TGCCGTGATCTCAATCACATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cstA2 | ||||
| Ortholog function: Carbon starvation protein A paralog | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4354 | -231 | 5.7 | ATATGTGATATGAATCACATAT |
| Salmonella typhimurium LT2 | STM4532 | -229 | 5.4 | TATCGTGATCTCAATCACATAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03443 | -228 | 5.2 | ATTAGTGATCTCAATCACATAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04776 | -231 | 5.2 | TATTGTGAGCTTAATCACACAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1187 | -57 | 3.7 | TATTTTTCTACAGCTAACAAAA |
| Proteus mirabilis HI4320 | PMI0142 | -279 | 3.6 | ATTTTTTATGTAATTAATAGTT |
| -234 | 5.2 | ATTTGTTATCTCGATCACAAAA | ||
|
Position: -132
Score: 4.8 Sequence: ATTTGCGAGATGGCTCACATTT
Locus tag: Kvar_4554
|
||||
| Kvar_4554 | -132 | 4.8 | ATTTGCGAGATGGCTCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: xylA | ||||
| Ortholog function: Xylose isomerase (EC 5.3.1.5) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3565 | -224 | 3.9 | ATTTATGACCGAGATCTTACTT |
| -134 | 4.2 | TTTTGCGAGCGAGCGCACACTT | ||
| Salmonella typhimurium LT2 | STM3661 | -260 | 3.9 | TTATGCGAAATTCATCACAGCA |
| -133 | 4.4 | TTTTGAGAGCCAGAGCACATTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_05021 | -214 | 4.1 | AATTATGACCGAGATCGTACTT |
| -122 | 4.2 | TTTTGCGAGGCGGCGCACACTT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03929 | -234 | 4.1 | TTTTGCGAGCTGGCGCACGTTT |
| Enterobacter sp. 638 | Ent638_0156 | -231 | 3.8 | ATTTATGACCGTGATCTGATTT |
| -135 | 3.9 | TTTTGGGAGCCAGCGCACGTTT | ||
| Yersinia pestis KIM | y4057 | -220 | 4.6 | TTATGAGATCTACACCACAATT |
| Serratia proteamaculans 568 | Spro_0098 | -222 | 3.9 | TTTTATGATGGCGGTCATGCTT |
| -129 | 4.6 | TTATGAGATCTGTCGCACATTT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0097 | -223 | 4.7 | TTTTTTGATGCGGGTCATATTT |
| -135 | 4.4 | TTTTGCGACACAGCGCACATTT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2275 | -251 | 4.6 | ATTTATGAGATAAATCACACAA |
|
Position: -172
Score: 4.5 Sequence: TGTTGTGATACATCTCACGTCA
Locus tag: Kvar_4616
|
||||
| Kvar_4616 | -172 | 4.5 | TGTTGTGATACATCTCACGTCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: CKO_03591 | ||||
| Ortholog function: hypothetical protein | ||||
| Salmonella typhimurium LT2 | STM4440 | -229 | 4.5 | AACTGTAATACCCATCACACTT |
| -162 | 3.8 | TGCCGCGATAGATCTCACACTT | ||
| -111 | 4.1 | TTCTGTGGCGCAGATCACCTAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04633 | -172 | 4.3 | TGTTGTGATACATCTCACGCCA |
| -121 | 4.2 | ATATGTGGAGTCGATCACCTAA | ||
| Enterobacter sp. 638 | Ent638_0424 | -265 | 3.8 | AAACCTTATCCGCGTCACACTT |
| -189 | 4.6 | TAGCGTGATATTCATCACGCAA | ||
| Erwinia amylovora ATCC 49946 | EAM_0469 | -156 | 3.8 | TGATGTGAGTTGTCTCGCTTTG |
|
Position: -95
Score: 3.6 Sequence: AAGTGTGATGTAACGCATTCAG
Locus tag: Kvar_4627
|
||||
| Kvar_4627 | -95 | 3.6 | AAGTGTGATGTAACGCATTCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ytfQ | ||||
| Ortholog function: Putative sugar ABC transport system, periplasmic binding protein YtfQ precursor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4227 | -98 | 3.7 | AAGTGTGATGTAACGCAATCTG |
| Citrobacter koseri ATCC BAA-895 | CKO_03603 | -130 | 3.7 | AGTTGTGATTAACCTTTTATTT |
| Yersinia pestis KIM | y0328 | -229 | 3.8 | TGGTGTGACGCCGCTCATTATT |
| Serratia proteamaculans 568 | Spro_4768 | -163 | 4.3 | TGATGTGATGCCGCTCATTATT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4236 | -68 | 3.7 | TATTGTTAGCCTACTTACCATA |
|
Position: -178
Score: 4.1 Sequence: TTTTATGAGCGATAGCACAGTA
Position: -126
Score: 3.7 Sequence: AAATGTGAATCTTGCCAGAAAA
Position: -57
Score: 3.9 Sequence: TGATGCGATATAAATAAAACAA
Locus tag: Kvar_4647
|
||||
| Kvar_4647 | -178 | 4.1 | TTTTATGAGCGATAGCACAGTA | |
| -126 | 3.7 | AAATGTGAATCTTGCCAGAAAA | ||
| -57 | 3.9 | TGATGCGATATAAATAAAACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cysQ | ||||
| Ortholog function: PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4214 | -126 | 3.6 | AACAGTGAAGAATGCCACAATT |
| Salmonella typhimurium LT2 | STM4404 | -144 | 3.9 | TTTTTTGCGAGTGTTCACAGAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03615 | -178 | 4.1 | TTTTTAGATCTGAAACACAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04608 | -178 | 4.1 | TTTTATGAGCGATAGCACAGAA |
| -126 | 3.7 | AAATGTGAATCTTGCCAGAAAA | ||
| -57 | 3.9 | TGATGCGATATAAATAAAACAA | ||
| Enterobacter sp. 638 | Ent638_0393 | -167 | 3.9 | TTTTTCGATCCAAGCCACAAAA |
| Erwinia amylovora ATCC 49946 | EAM_0455 | -158 | 4.2 | AAATGTGACACAGCACGAATAA |
| Serratia proteamaculans 568 | Spro_0454 | -180 | 3.7 | AACTGTGAAGTGTGGCAGAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3601 | -258 | 3.7 | TAAAGTGATTATCGTCTCTAAA |
|
Position: -157
Score: 3.8 Sequence: TTGTTTTATTTATATCGCATCA
Position: -88
Score: 3.7 Sequence: TTTTCTGGCAAGATTCACATTT
Position: -36
Score: 4.2 Sequence: TACTGTGCTATCGCTCATAAAA
Locus tag: Kvar_4648
|
||||
| Kvar_4648 | -157 | 3.8 | TTGTTTTATTTATATCGCATCA | |
| -88 | 3.7 | TTTTCTGGCAAGATTCACATTT | ||
| -36 | 4.2 | TACTGTGCTATCGCTCATAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cpdB | ||||
| Ortholog function: 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4213 | -118 | 3.8 | AACTGTGATAGTGTCATCATTT |
| -85 | 3.8 | AATTGTGGCATTCTTCACTGTT | ||
| Salmonella typhimurium LT2 | STM4403 | -145 | 3.7 | TTCTGTGAACACTCGCAAAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03616 | -25 | 4.2 | TTTTGTGTTTCAGATCTAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04607 | -156 | 3.8 | TTGTTTTATTTATATCGCATCA |
| -87 | 3.7 | TTTTCTGGCAAGATTCACATTT | ||
| -35 | 4.2 | TTCTGTGCTATCGCTCATAAAA | ||
| Enterobacter sp. 638 | Ent638_0392 | -34 | 4 | TTTTGTGGCTTGGATCGAAAAA |
| Yersinia pestis KIM | y0653 | -148 | 3.6 | AACTGTGAGCGTCTACGCGTTA |
| -116 | 3.8 | TTTTCTGCCAAACTTCACACTT | ||
| -63 | 4.4 | TTTTGCGATACATATCGAATAT | ||
| Serratia proteamaculans 568 | Spro_0453 | -95 | 3.8 | TTTTCTGCCACACTTCACAGTT |
|
Position: -192
Score: 4.1 Sequence: TTTTGTGAGCTATTTCGCGGTG
Locus tag: Kvar_4654
|
||||
| Kvar_4654 | -192 | 4.1 | TTTTGTGAGCTATTTCGCGGTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cycA2 | ||||
| Ortholog function: D-alanine/D-serine/glycine permease | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4208 | -198 | 4.7 | TTTTGTGAGCTGTTTCGCGTTA |
| Salmonella typhimurium LT2 | STM4398 | -193 | 5.1 | TTTTGTGAGCTAATTCGCATTA |
| -170 | 3.9 | CAAAGTGATATAACACTCATTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03624 | -199 | 4.4 | TTTTGTGAGCTAATTCGCGTTG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04601 | -192 | 4.7 | TTTTGTGAGCTATTTCGCGTTA |
| -169 | 3.8 | ATGAGTGATATAACACTCACTT | ||
| Enterobacter sp. 638 | Ent638_0378 | -201 | 4.2 | TTTTGTGAGCTGTTTTGCATTG |
| Yersinia pestis KIM | y2447 | -199 | 4.5 | CACTGTGATGTACTTAACAAAA |
| -118 | 3.7 | TAATATTAAATTATTCGCAAAT | ||
| Proteus mirabilis HI4320 | PMI1614 | -102 | 4.4 | TTCTGAGATTTGTGTCACAATA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1965 | -102 | 4.6 | TATAGTAATCTGTGTCACAATA |
|
Position: -265
Score: 3.9 Sequence: TTTTGCGAGGCGTCGCGCATAA
Position: -127
Score: 4.1 Sequence: TATTGCGGCGTACGTCACATTT
Locus tag: Kvar_4668
|
||||
| Kvar_4668 | -265 | 3.9 | TTTTGCGAGGCGTCGCGCATAA | |
| -127 | 4.1 | TATTGCGGCGTACGTCACATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ulaA | ||||
| Ortholog function: Ascorbate-specific PTS system, EIIC component | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04586 | -125 | 4 | TATTGCGGCGCGCGTCACATTT |
| -88 | 3.3 | TGTTGTGATTATTTTTGATTAT | ||
|
Position: -156
Score: 3.7 Sequence: ATCTGTGAAATGGGTCACCGCT
Locus tag: Kvar_4721
|
||||
| Kvar_4721 | -156 | 3.7 | ATCTGTGAAATGGGTCACCGCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fxsA | ||||
| Ortholog function: suppressor of F plamsid exlusion of phage T7 | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4140 | -202 | 4.1 | TACCGTAATCTGGATCACTTTA |
| -152 | 4.3 | ATTTGTGAAATAGATCACCGCT | ||
| Salmonella typhimurium LT2 | STM4327 | -203 | 4.1 | TACCGTAATCTGGATCACTTAA |
| -153 | 4.1 | TTTTGTGAAATAGGTCACCGCT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03695 | -156 | 4.1 | TTTTGTGAAATAGGTCACCGCT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04530 | -140 | 3.7 | ATCTGTGAAATGGGTCACCGCT |
| Enterobacter sp. 638 | Ent638_0327 | -151 | 3.8 | ATCTGTGAAATGAATCACCGCT |
| Erwinia amylovora ATCC 49946 | EAM_0417 | -161 | 3.9 | ATATCTGTTCCAGGTCACATTG |
| Yersinia pestis KIM | y0607 | -245 | 4.8 | ATCTGTGATTGCTCTCACACTT |
| Serratia proteamaculans 568 | Spro_0407 | -117 | 4.9 | TTCTGTGATCTCATTCACGTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0623 | -245 | 3.7 | AACTGTGATTGTAGTCACGAGT |
| -185 | 3.6 | AAATGTGCAAAGGCGCACCCAT | ||
| Edwardsiella tarda EIB202 | ETAE_0312 | -189 | 4.6 | ATCTGTGATAATACTCACAGAT |
| Proteus mirabilis HI4320 | PMI2545 | -188 | 4.7 | TTTTGTGATCTATCTCATGGAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4136 | -188 | 5.6 | ATATGTGATATTTATCACAATT |
|
Position: -204
Score: 3.9 Sequence: AGCGGTGACCCATTTCACAGAT
Locus tag: Kvar_4722
|
||||
| Kvar_4722 | -204 | 3.9 | AGCGGTGACCCATTTCACAGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aspA | ||||
| Ortholog function: aspartate ammonia-lyase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4139 | -206 | 4.5 | AGCGGTGATCTATTTCACAAAT |
| -156 | 4.2 | TAAAGTGATCCAGATTACGGTA | ||
| Salmonella typhimurium LT2 | STM4326 | -209 | 4.2 | AGCGGTGACCTATTTCACAAAA |
| -159 | 4.2 | TTAAGTGATCCAGATTACGGTA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03696 | -54 | 4.2 | AGCGGTGACCTATTTCACAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04529 | -204 | 3.9 | AGCGGTGACCCATTTCACAGAT |
| -154 | 3.8 | ATAAGTGATCAAGCTTACTGAT | ||
| Enterobacter sp. 638 | Ent638_0326 | -205 | 4.1 | AGCGGTGATTCATTTCACAGAT |
| Erwinia amylovora ATCC 49946 | EAM_0416 | -228 | 4.2 | CAATGTGACCTGGAACAGATAT |
| Yersinia pestis KIM | y0606 | -224 | 4.6 | AAGTGTGAGAGCAATCACAGAT |
| Serratia proteamaculans 568 | Spro_0406 | -205 | 4.7 | AAACGTGAATGAGATCACAGAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0621 | -272 | 4 | ACTCGTGACTACAATCACAGTT |
| Edwardsiella tarda EIB202 | ETAE_0311 | -197 | 4.4 | ATCTGTGAGTATTATCACAGAT |
| Proteus mirabilis HI4320 | PMI2546 | -206 | 4.1 | ATCCATGAGATAGATCACAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4137 | -274 | 3.8 | AGATATAATTGGGGTCACAGTT |
| -211 | 5.6 | AATTGTGATAAATATCACATAT | ||
|
Position: -101
Score: 3.9 Sequence: TTGCGTGATCTGCCCCCCAATT
Locus tag: Kvar_4769
|
||||
| Kvar_4769 | -101 | 3.9 | TTGCGTGATCTGCCCCCCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acs | ||||
| Ortholog function: acetyl-coenzyme A synthetase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4069 | -100 | 4.1 | TTGCGTGATCTGTCGCCCAAAT |
| Salmonella typhimurium LT2 | STM4275 | -100 | 4.1 | TTGCGTGATCTGTCGCCCAAAT |
| Citrobacter koseri ATCC BAA-895 | CKO_03816 | -101 | 4.3 | TTGCGTGATCTGCCGCGCAAAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04478 | -101 | 3.9 | TTGCGTGATCTGCCCCCCAATT |
| Enterobacter sp. 638 | Ent638_0276 | -101 | 4.1 | TTGCGTGATCTGTCGCCCAAAT |
| Yersinia pestis KIM | y0510 | -97 | 4.2 | ATACGTGATCTGCCGCCCAAAA |
| Serratia proteamaculans 568 | Spro_0297 | -97 | 4 | TTGCGTGATCTGCCGCCCAAAA |
| Proteus mirabilis HI4320 | PMI3037 | -97 | 4.5 | TTTCGTGATCTTATGCGCAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0074 | -98 | 4.2 | TTGCGTGATCTTCCGCGCAAAA |
|
Position: -144
Score: 5.4 Sequence: AAGTGTGATATAGTTCACACAA
Locus tag: Kvar_4786
|
||||
| Kvar_4786 | -144 | 5.4 | AAGTGTGATATAGTTCACACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yjcB | ||||
| Ortholog function: hypothetical protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4060 | -149 | 5.7 | AATTGTGATATAGTTCACAAAA |
| Salmonella typhimurium LT2 | STM4263 | -149 | 5.7 | TTTTGTGATATAGTTCACAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03830 | -150 | 5.7 | TATTGTGATATAGTTCACAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04460 | -143 | 5.4 | AAGTGTGATATAGTTCACACAA |
| Enterobacter sp. 638 | Ent638_0263 | -82 | 5.3 | AAACGTGATATAGTTCACACAT |
| Serratia proteamaculans 568 | Spro_2355 | -81 | 5 | CAATGTGACGCAGATCACACTA |
|
Position: -254
Score: 4.5 Sequence: TTGTGTGATCTCCATTGCAAAA
Locus tag: Kvar_4824
|
||||
| Kvar_4824 | -254 | 4.5 | TTGTGTGATCTCCATTGCAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malK | ||||
| Ortholog function: maltose/maltodextrin transporter ATP-binding protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4035 | -254 | 4.4 | TTGTGTGATCTCTGTTACAGAA |
| -225 | 3.9 | TAATGTGGAGATGCGCACATAA | ||
| -191 | 3.7 | TTTTGCAAGCAACATCACGAAA | ||
| Salmonella typhimurium LT2 | STM4230 | -254 | 4.7 | TTATGTGATCTGTGTTGCATAA |
| -225 | 3.6 | TAATGCGTGCTGGCGCACACAA | ||
| -223 | 3.8 | ATGCGTGCTGGCGCACACAAAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03880 | -254 | 4.7 | TTATGTGATCTGTGTTGCATAA |
| -225 | 3.7 | TAATGCGTGTTGGCGCACATAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04424 | -254 | 4.5 | TTGTGTGATCTCCATTGCAAAA |
| -225 | 3.7 | TATTGCGTCCTGGAGCACAGAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0457 | -250 | 4 | GGGTGTGATCTCTATTACAAAA |
| -221 | 3.8 | AAGCGTGCCGTTGCCCACAAAA | ||
| -187 | 4.9 | TTTTGCGATAAATATCACAATT | ||
|
Position: -138
Score: 4.4 Sequence: TTTTGCAATGGAGATCACACAA
Locus tag: Kvar_4825
|
||||
| Kvar_4825 | -138 | 4.4 | TTTTGCAATGGAGATCACACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malE | ||||
| Ortholog function: maltose ABC transporter periplasmic protein | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04423 | -167 | 3.8 | TTCTGTGCTCCAGGACGCAATA |
| -138 | 4.4 | TTTTGCAATGGAGATCACACAA | ||
|
Position: -179
Score: 3.4 Sequence: AAACGTGATTTACCGCCTGAAT
Locus tag: Kvar_4860
|
||||
| Kvar_4860 | -179 | 3.4 | AAACGTGATTTACCGCCTGAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hupA | ||||
| Ortholog function: DNA-binding protein HU-alpha (HU-2) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4000 | -179 | 3.4 | AAACGTGATTTAACGCCTGATT |
| Citrobacter koseri ATCC BAA-895 | CKO_02986 | -179 | 3.4 | AAACGTGATTTAACGCCTGATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04382 | -179 | 3.4 | AAACGTGATTTACCGCCTGAAT |
| Enterobacter sp. 638 | Ent638_0213 | -179 | 3.5 | AAACGTGATTTAACGCCTGTTT |
| Yersinia pestis KIM | y0499 | -181 | 3.4 | AAACGTGATTTAACGCCTGATT |
| Serratia proteamaculans 568 | Spro_0290 | -181 | 3.4 | AAACGTGATTTAACGCCTCATT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0238 | -197 | 3.3 | AAACGTGATTTAAGGCCTGAAA |
| Edwardsiella tarda EIB202 | ETAE_0183 | -182 | 3.3 | AAACGTGATTTAACACCTGATT |
| Proteus mirabilis HI4320 | PMI2771 | -183 | 3.7 | AAACGTGATTTAGTGCTTGAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0492 | -179 | 3.4 | AAACGTGATTTAATGCTTTAAA |
|
Position: -216
Score: 3.3 Sequence: AAGTTCTACTCATATCAAAAAA
Position: 5
Score: 3.9 Sequence: ATTTGCGATACAACTCATTATT
Locus tag: Kvar_4875
|
||||
| Kvar_4875 | -216 | 3.3 | AAGTTCTACTCATATCAAAAAA | |
| 5 | 3.9 | ATTTGCGATACAACTCATTATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dcuB | ||||
| Ortholog function: C4-dicarboxylate transporter DcuB | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4123 | -53 | 3.5 | GACTGTGATCTATTCAGCAAAA |
| Salmonella typhimurium LT2 | STM4301 | -53 | 3.5 | GGCTGTGATCCATTTATCAAAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03748 | -52 | 3.9 | GACTGTGATCTATTTATCAAAA |
| Enterobacter sp. 638 | Ent638_2479 | -81 | 3.3 | AAATCTGATCTGGCTCCCAGCC |
| Serratia proteamaculans 568 | Spro_3863 | -77 | 3.6 | GTTTGTGATCGCTATCCCTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1533 | -296 | 3.5 | TATTGCGAGCGAGATCTTTTAT |
| -247 | 3.5 | TTAATAGATTTAGATCAAGAAA | ||
| Edwardsiella tarda EIB202 | ETAE_2844 | -194 | 3.6 | ATACTTTATTCAGATCAATTTT |
| Proteus mirabilis HI4320 | PMI0389 | -138 | 3.3 | AACTATAACAACGATCAAAAAA |
|
Position: -143
Score: 5 Sequence: TAATGTGATGTGTATCACTGTT
Locus tag: Kvar_4905
|
||||
| Kvar_4905 | -143 | 5 | TAATGTGATGTGTATCACTGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: udp | ||||
| Ortholog function: Uridine phosphorylase (EC 2.4.2.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3831 | -144 | 5.2 | TTATGTGATTTGCATCACTTTT |
| -92 | 4.2 | CATGGTGATGAGTATCACGAAA | ||
| Salmonella typhimurium LT2 | STM3968 | -144 | 5.1 | TATTGTGATGAACATCACTTTT |
| -92 | 4.1 | CATAGTGATGGCTGTCACGAAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00173 | -143 | 5.2 | TTATGTGATGTAAATCACTATT |
| -91 | 3.9 | CATGGTGATGAGCGTCACGAAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04327 | -143 | 5.2 | TAATGTGATGTGTATCACTATT |
| -91 | 4.1 | CTTGGTGACTATCATCACAAAA | ||
| Enterobacter sp. 638 | Ent638_3962 | -143 | 4.7 | TAGTGTGATGCATGTCACTATT |
| Erwinia amylovora ATCC 49946 | EAM_0200 | -143 | 4.6 | AATTGCGACTTGTATCACCTTT |
| -90 | 4 | ATTAAGGATGTTCATCACATAA | ||
| Yersinia pestis KIM | y0444 | -149 | 5.4 | ATGTGTGATTTAAATCACAATT |
| -97 | 4 | CAAGGTGACATAAATCACGAAA | ||
| Serratia proteamaculans 568 | Spro_0244 | -143 | 5.3 | TTTTGTGACTTTAATCACAAAA |
| -125 | 3.7 | AAAAGTTATGTAGATTGCATTC | ||
| -91 | 4.1 | CATAGTGATGGTTGTCACGAAA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0185 | -197 | 5.1 | AAAAGTGATTTAAGTCACATTT |
| Edwardsiella tarda EIB202 | ETAE_0143 | -148 | 4.7 | TATTGTGAAAATAATCACAGTT |
| Proteus mirabilis HI4320 | PMI3532 | -145 | 5.1 | ATTTGTGATAACTATCACGTTT |
| -93 | 3.6 | ACAGGTGACGTCAATCACTAAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4417 | -271 | 5.2 | TTTTGTGATTTATATCTCAAAA |
| -219 | 4 | TGAAGTGACATTTATCACTAAA | ||
|
Position: -56
Score: 4.4 Sequence: TTGTGTGATACAGGGCAAAAAA
Locus tag: Kvar_4911
|
||||
| Kvar_4911 | -56 | 4.4 | TTGTGTGATACAGGGCAAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pldB | ||||
| Ortholog function: Lysophospholipase L2 (EC 3.1.1.5) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00166 | -60 | 3.8 | TATTGTGTCAGGCATCATAAAG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04321 | -56 | 3.8 | TTGTGTGATACACGGTAAAAAA |
| Enterobacter sp. 638 | Ent638_3971 | -56 | 4.3 | TTTTGTGATGCGTCACGAAAAA |
| Yersinia pestis KIM | y0400 | -144 | 4.8 | AGTTGTGCTATGGCTCACAAAA |
| Serratia proteamaculans 568 | Spro_0196 | -88 | 3.8 | TTGTAAGAATTGAATCACAATA |
| -53 | 4.2 | TCTTGTGCCAGAGGTCACATTT | ||
| Edwardsiella tarda EIB202 | ETAE_3343 | -217 | 3.9 | CGGTGTGATAATCCTCAAACTT |
|
Position: -126
Score: 4 Sequence: AGGTGTTAAATTGATCACGTTT
Locus tag: Kvar_4927
|
||||
| Kvar_4927 | -126 | 4 | AGGTGTTAAATTGATCACGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyaA | ||||
| Ortholog function: Adenylate cyclase (EC 4.6.1.1) | ||||
| Salmonella typhimurium LT2 | STM3939 | -164 | 4 | AGGTGTTAAATTGATCACGTTT |
| Citrobacter koseri ATCC BAA-895 | CKO_00148 | -174 | 4 | AGGTGTTAAATTGATCACGTTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04305 | -147 | 4 | AGGTGTTAAATTGATCACGTTT |
|
Position: -217
Score: 4.2 Sequence: AAACGTGATCAATTTAACACCT
Locus tag: Kvar_4928
|
||||
| Kvar_4928 | -217 | 4.2 | AAACGTGATCAATTTAACACCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hemC | ||||
| Ortholog function: porphobilinogen deaminase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3805 | -236 | 4.2 | AAACGTGATCAATTTAACACCT |
| Salmonella typhimurium LT2 | STM3938 | -219 | 4.2 | AAACGTGATCAATTTAACACCT |
| Citrobacter koseri ATCC BAA-895 | CKO_00147 | -220 | 4.2 | AAACGTGATCAATTTAACACCT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04304 | -232 | 4.2 | AAACGTGATCAATTTAACACCT |
| Enterobacter sp. 638 | Ent638_3987 | -211 | 4.2 | AAACGTGATCAATCTAACACCT |
| Serratia proteamaculans 568 | Spro_0178 | -223 | 4.2 | AAACGTGATCAATCTAACACCT |
| Edwardsiella tarda EIB202 | ETAE_0118 | -205 | 4.2 | AAACGTGATCAATTTAACACCT |
|
Position: -226
Score: 3.9 Sequence: TTATATGAAGAAAATCAGAAAT
Locus tag: Kvar_4962
|
||||
| Kvar_4962 | -226 | 3.9 | TTATATGAAGAAAATCAGAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yifB | ||||
| Ortholog function: magnesium chelatase family protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3765 | -266 | 4.2 | TTTTATGATGCGTTTAATAATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04266 | -226 | 4.1 | TTATATGAAAAAAATCAAAAAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4230 | -144 | 3.9 | AATTGCGACCCATTACGCACAA |
| Edwardsiella tarda EIB202 | ETAE_0086 | -128 | 3.7 | TATTGTTAATGTGTTAATAATT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4686 | -268 | 3.7 | TAATTTAATTTAAATTTCAAAA |
|
Position: -69
Score: 4 Sequence: TATTGTGAATAAAAATACAATA
Locus tag: Kvar_4974
|
||||
| Kvar_4974 | -69 | 4 | TATTGTGAATAAAAATACAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argC | ||||
| Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) | ||||
| Salmonella typhimurium LT2 | STM4121 | -44 | 3.5 | AATTATGAATAAAAATACATTA |
| Citrobacter koseri ATCC BAA-895 | CKO_03036 | -110 | 4 | ATTTGTGAATAAAAATACATTA |
| Enterobacter sp. 638 | Ent638_4028 | -44 | 3.8 | AAATGTGAATAAAAATACACTA |
| Yersinia pestis KIM | y0310 | -43 | 3.7 | TTTATTGACATAAATAAAAATA |
| Serratia proteamaculans 568 | Spro_4781 | -167 | 4 | TATTGTGAATAAAAATACAATA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0192 | -159 | 3.5 | TATTTTGAATAAAAATACAATA |
| Edwardsiella tarda EIB202 | ETAE_3482 | -160 | 3.4 | AATTATGAATAAAAATACAATA |
| Proteus mirabilis HI4320 | PMI3237 | -57 | 3.6 | TTTTTTGAATAAAAATACATTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4744 | -59 | 3.6 | TTTTTTGAATAAAAATACATTA |
|
Position: -66
Score: 4.3 Sequence: TATTGTATTTTTATTCACAATA
Locus tag: Kvar_4975
|
||||
| Kvar_4975 | -66 | 4.3 | TATTGTATTTTTATTCACAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argE | ||||
| Ortholog function: acetylornithine deacetylase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3957 | -66 | 3.7 | TAGTGTATTTTTATTCATAAAT |
| Salmonella typhimurium LT2 | STM4120 | -66 | 3.9 | TAATGTATTTTTATTCATAATT |
| Citrobacter koseri ATCC BAA-895 | CKO_03037 | -27 | 4.3 | TAATGTATTTTTATTCACAAAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04246 | -27 | 4 | TATTGTATTTTTATTCAAAATA |
| Enterobacter sp. 638 | Ent638_4029 | -66 | 4.2 | TAGTGTATTTTTATTCACATTT |
| Erwinia amylovora ATCC 49946 | EAM_0137 | -66 | 3.8 | TATTGTATTTTTATTCACTATT |
| Yersinia pestis KIM | y0309 | -223 | 3.6 | TATTTTTATTTATGTCAATAAA |
| Serratia proteamaculans 568 | Spro_4782 | -71 | 4.3 | TATTGTATTTTTATTCACAATA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0191 | -65 | 4 | TATTGTATTTTTATTCAAAATA |
| Edwardsiella tarda EIB202 | ETAE_3483 | -65 | 3.9 | TATTGTATTTTTATTCATAATT |
| Proteus mirabilis HI4320 | PMI3236 | -65 | 3.9 | TAATGTATTTTTATTCAAAAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4745 | -65 | 3.9 | TAATGTATTTTTATTCAAAAAA |
|
Position: -221
Score: 4 Sequence: AACGGTGACGATCGTCACATTT
Locus tag: Kvar_4976
|
||||
| Kvar_4976 | -221 | 4 | AACGGTGACGATCGTCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fsaB | ||||
| Ortholog function: fructose 6-phosphate aldolase 2 | ||||
| Enterobacter sp. 638 | Ent638_4030 | -214 | 3.7 | ACGCATGATCCCCATCACATTC |
|
Position: -139
Score: 4.9 Sequence: AAATGTGATCTAAATCATCCTT
Locus tag: Kvar_4979
|
||||
| Kvar_4979 | -139 | 4.9 | AAATGTGATCTAAATCATCCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fsaB | ||||
| Ortholog function: fructose 6-phosphate aldolase 2 | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04242 | -139 | 4.9 | AAATGTGATCTAAATCATCCTT |
|
Position: -144
Score: 3.6 Sequence: TCTTGCGAGCCGGATCGAAAAA
Locus tag: Kvar_4989
|
||||
| Kvar_4989 | -144 | 3.6 | TCTTGCGAGCCGGATCGAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cytR | ||||
| Ortholog function: transcriptional repressor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3934 | -128 | 3.9 | AAATTCAATATTCATCACACTT |
| Citrobacter koseri ATCC BAA-895 | CKO_03060 | -129 | 3.8 | AAATTAAATATCCATCACACTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04229 | -162 | 3.6 | TCTTGCGAGCCGGATCGAAAAA |
| -143 | 3.9 | AAATTTAACAAGCATCACGTTT | ||
| Yersinia pestis KIM | y0297 | -177 | 3.7 | TTCTGCGAGCCAGTTCGAAAAA |
| -135 | 3.6 | TTATGCAAATTAGGTAACAAAT | ||
| Edwardsiella tarda EIB202 | ETAE_3434 | -258 | 4.2 | AAGTGCGATCGGGATCGAAAAA |
| -175 | 3.6 | ATATGTGATCATATACTCATCG | ||
| Proteus mirabilis HI4320 | PMI3218 | -207 | 4.3 | TTTTGCGAACTACCTCATAAAA |
| -189 | 3.9 | AAAAACGATTGGTATCACACTT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4760 | -213 | 4.2 | ATTTGCGAGCCATATCGAATAA |
| -195 | 4.6 | ATAAATGATTTATATCACACTT | ||
|
Position: -248
Score: 3.9 Sequence: CGATGTGATGAGTGTAAAAATT
Position: -162
Score: 4 Sequence: TTAGTTGTTCTACATCACAAAA
Locus tag: Kvar_5001
|
||||
| Kvar_5001 | -248 | 3.9 | CGATGTGATGAGTGTAAAAATT | |
| -162 | 4 | TTAGTTGTTCTACATCACAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sodA | ||||
| Ortholog function: Manganese superoxide dismutase (EC 1.15.1.1) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3908 | -161 | 3.8 | GTGGGTGATTTGCTTCACATCT |
| Citrobacter koseri ATCC BAA-895 | CKO_03093 | -150 | 4.4 | ACGGGTGATTTGGCTCACATAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04217 | -150 | 4 | TTAGTTGTTCTACATCACAAAA |
| Enterobacter sp. 638 | Ent638_4063 | -160 | 3.6 | CCGCGTGAGCAGACTCACAATT |
| Proteus mirabilis HI4320 | PMI3036 | -292 | 3.7 | TTTTGCGCATAAGATCACGAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0075 | -297 | 3.7 | TTTTGCGCGGAAGATCACGCAA |
|
Position: -149
Score: 4.7 Sequence: TTTTGTGATGTAGAACAACTAA
Position: -63
Score: 3.6 Sequence: AATTTTTACACTCATCACATCG
Locus tag: Kvar_5002
|
||||
| Kvar_5002 | -149 | 4.7 | TTTTGTGATGTAGAACAACTAA | |
| -63 | 3.6 | AATTTTTACACTCATCACATCG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rhaT | ||||
| Ortholog function: L-rhamnose-proton symport | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3907 | -145 | 4.1 | AGATGTGAAGCAAATCACCCAC |
| Salmonella typhimurium LT2 | STM4050 | -293 | 3.6 | TTATGTGACCTCACGCAGCGTT |
| -149 | 3.9 | AAACGTGAAGTTAATCACTTCA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03094 | -148 | 4.1 | ATATGTGAGCCAAATCACCCGT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04216 | -149 | 4.7 | TTTTGTGATGTAGAACAACTAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0450 | -193 | 3.6 | TTTTGTGATCCTGCCTATATCA |
|
Position: -204
Score: 4 Sequence: GACCGTGAGGGAAATCACAATT
Locus tag: Kvar_5004
|
||||
| Kvar_5004 | -204 | 4 | GACCGTGAGGGAAATCACAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rhaS | ||||
| Ortholog function: L-rhamnose operon regulatory protein RhaS | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3905 | -182 | 4.5 | GAACGTGATGATGTTCACAATT |
| -147 | 4.5 | TGATGTGATGCTCACCGCATTT | ||
| Salmonella typhimurium LT2 | STM4048 | -182 | 4.3 | GAACGTGATAGCGTTCACAGTT |
| -147 | 4 | CGGTGTGATGTCGTCCGCATTT | ||
| -62 | 3.8 | TAAGGTGAGGCCGATAACCCTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03099 | -194 | 4.5 | GAACGTGATAGCGTTCACAATT |
| -34 | 4.3 | ATTTCTGACATGTTTCTCATAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04214 | -204 | 3.8 | GACCGTGAGGGACATCACAGTT |
| Enterobacter sp. 638 | Ent638_4066 | -194 | 4.2 | GAACGTGAGGGAGTTCACAGTT |
| Yersinia pestis KIM | y0590 | -214 | 3.9 | GAAAGTGAAACAGCTCACAGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0441 | -144 | 3.9 | CGGTGTGATCCTTGCCACACTT |
|
Position: -128
Score: 4.6 Sequence: AATTGTGATTTCCCTCACGGTC
Locus tag: Kvar_5005
|
||||
| Kvar_5005 | -128 | 4.6 | AATTGTGATTTCCCTCACGGTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rhaB | ||||
| Ortholog function: rhamnulokinase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3904 | -162 | 3.8 | AAATGCGGTGAGCATCACATCA |
| -127 | 4.4 | AATTGTGAACATCATCACGTTC | ||
| Salmonella typhimurium LT2 | STM4047 | -247 | 3.9 | AAGGGTTATCGGCCTCACCTTA |
| -127 | 4.1 | AACTGTGAACGCTATCACGTTC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03100 | -182 | 4.5 | AATTGTGAACGCTATCACGTTC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04213 | -128 | 4.2 | AACTGTGATGTCCCTCACGGTC |
| Enterobacter sp. 638 | Ent638_4067 | -129 | 4.2 | AACTGTGAACTCCCTCACGTTC |
| Yersinia pestis KIM | y0587 | -234 | 4.2 | AACTGTGAGCTGTTTCACTTTC |
|
Position: -275
Score: 3.9 Sequence: CTTTGTGACCGCTTTCACGGAG
Locus tag: Kvar_5045
|
||||
| Kvar_5045 | -275 | 3.9 | CTTTGTGACCGCTTTCACGGAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnA | ||||
| Ortholog function: glutamine synthetase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3870 | -269 | 4.2 | CTTTGTGATCGCTTTCACGGAG |
| Salmonella typhimurium LT2 | STM4007 | -272 | 4.2 | CTTTGTGATCGCTTTCACGGAG |
| -114 | 3.8 | CAATGTGAAAGTTGGCACAGAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03140 | -250 | 4.2 | CTTTGTGATCGCTTTCACGGAG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04178 | -299 | 3.9 | CTTTGTGACCGCTTTCACGGAG |
| Serratia proteamaculans 568 | Spro_4881 | -267 | 4 | GTATGTGATCCCTTTCACGGTG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0029 | -265 | 4.2 | CTTTGTGATCCCTTTCACGGTG |
| Edwardsiella tarda EIB202 | ETAE_3493 | -267 | 4.2 | GTTTGTGATCCTATTCACGATG |
| Proteus mirabilis HI4320 | PMI2882 | -270 | 4.7 | AATTGTGATCCTTTTCACGCCT |
| -215 | 3.8 | AATTGTGCAACTATTCAGACTT | ||
| -181 | 3.9 | ATTTGTGCAATAATTAAAAAAT | ||
|
Position: -262
Score: 4.8 Sequence: TTATGTGATCTAATGCACGCTT
Position: -211
Score: 3.7 Sequence: TTTTGTATGACTGCTCACAGAA
Locus tag: Kvar_5075
|
||||
| Kvar_5075 | -262 | 4.8 | TTATGTGATCTAATGCACGCTT | |
| -211 | 3.7 | TTTTGTATGACTGCTCACAGAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpI | ||||
| Ortholog function: ATP synthase subunit I | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3739 | -263 | 4.8 | ATATGTGATCTGAAGCACGCTT |
| Salmonella typhimurium LT2 | STM3872 | -262 | 4.6 | ATGTGTGATCTGGTGCACGCTT |
| -211 | 4.1 | TTTTGTACGATCGTTCACACTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00079 | -262 | 4.7 | ATATGTGATCCGAAGCACGCTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04144 | -262 | 4.7 | TTATGTGATCTGATGCACGCTT |
| Enterobacter sp. 638 | Ent638_4125 | -261 | 4.8 | TTTTGTGATCTCGTGCACGCTT |
| Erwinia amylovora ATCC 49946 | EAM_3481 | -264 | 4.4 | ATTTGTGATCGTGGACACGCTT |
| Yersinia pestis KIM | y4142 | -263 | 5.4 | TTATGTGATGTATTTCACGTTT |
| Serratia proteamaculans 568 | Spro_0001 | -265 | 4.4 | TATTGTGAGCAACTACACGTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4519 | -254 | 5 | TTATGTGAGTCACATCACAGAT |
| Edwardsiella tarda EIB202 | ETAE_3526 | -297 | 3.7 | AATCGTGAAAATATTTAAATTA |
| Proteus mirabilis HI4320 | PMI3057 | -259 | 5 | TTGTGTGTTCTAGATCACATTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0047 | -265 | 5.7 | TTATGTGATTTAAATCACATTT |